SNP rs1426654

Basic Information
Name rs1426654
Chromosome 15
Position 48134287
Weight of evidence 63
Additional Information

Links to SNPedia

Title Summary
rs1426654 A/G Mixed european + (african or asian) ancestry possible
rs1426654 A/A Probably light-skinned, european ancestry
rs1426654 G/G Probably darker-skinned, asian or african ancestry
Note: For some SNPs, testing providers detect the genotype from the opposite strand of DNA, so that the genotypes listed on openSNP don't appear here. In those cases, please replace "A" by "T" or "G" by "C" (and vice-versa).

Publications on this SNP on the Public Library of Science:

First Author Title Year of Publication # of readers
Pongsakorn Wangkumhang Insight into the Peopling of Mainland Southeast Asia from Thai Population Genetic Structure 2013 4867
Molly Scannell Bryan Genome-Wide Association Studies and Heritability Estimates of Body Mass Index Related Phenotypes in Bangladeshi Adults 2014 1395
Tailce K. M. Leite Genomic Ancestry, Self-Reported “Color” and Quantitative Measures of Skin Pigmentation in Brazilian Admixed Siblings 2011 2825
Liping Hou Validation of a Cost-Efficient Multi-Purpose SNP Panel for Disease Based Research 2011 2001
Beatriz Marcheco-Teruel Cuba: Exploring the History of Admixture and the Genetic Basis of Pigmentation Using Autosomal and Uniparental Markers 2014 10920
Graham Coop The Role of Geography in Human Adaptation 2009 38569
Zhaoming Wang Genetic Admixture and Population Substructure in Guanacaste Costa Rica 2010 3475
Chandana Basu Mallick The Light Skin Allele of SLC24A5 in South Asians and Europeans Shares Identity by Descent 2013 23488
Saioa López The Interplay between Natural Selection and Susceptibility to Melanoma on Allele 374F of SLC45A2 Gene in a South European Population 2014 1764
Sophie I. Candille Genome-Wide Association Studies of Quantitatively Measured Skin, Hair, and Eye Pigmentation in Four European Populations 2012 12922
Danielle Fernandes Durso Association of Genetic Variants with Self-Assessed Color Categories in Brazilians 2014 3209
Khai C. Ang Skin Color Variation in Orang Asli Tribes of Peninsular Malaysia 2012 5470
Sandra Beleza Genetic Architecture of Skin and Eye Color in an African-European Admixed Population 2013 42644
Caio Cesar Silva de Cerqueira Implications of the Admixture Process in Skin Color Molecular Assessment 2014 4634
René L. Warren Targeted Assembly of Short Sequence Reads 2011 5829
Angela M Hancock Adaptations to Climate in Candidate Genes for Common Metabolic Disorders 2008 21387
Zurab R. Tsetskhladze Functional Assessment of Human Coding Mutations Affecting Skin Pigmentation Using Zebrafish 2012 5795
Peter Johansen Pigmentary Markers in Danes – Associations with Quantitative Skin Colour, Nevi Count, Familial Atypical Multiple-Mole, and Melanoma Syndrome 2016 352

Publications on this SNP on Mendeley

First Author Title Pub. Year # of Readers DOI
Chandana Basu Mallick The Light Skin Allele of SLC24A5 in South Asians and Europeans Shares Identity by Descent 2013 21 10.1371/journal.pgen.1003912Oa logo
Rinaldo W. Pereira Genomic Ancestry, Self-Reported “Color” and Quantitative Measures of Skin Pigmentation in Brazilian Admixed Siblings 2011 16 10.1371/journal.pone.0027162
Green M R SLC24A5/NCKX5 influences melanocyte cholesterol homeostasis and MC1R expression: A novel mechanism for natural human skin colour variation? 2010 2 -
Green M R SLC24A5/NCKX5 influences melanocyte cholesterol homeostasis and MC1R expression: A novel mechanism for natural human skin colour variation? 2010 2 Oa logo
Gerasimos Dimisianos A study of a single variant allele (rs1426654) of the pigmentation-related gene SLC24A5 in Greek subjects. 2009 7 10.1111/j.1600-0625.2008.00758.xOa logo
Emiliano Giardina Haplotypes in SLC24A5 Gene as Ancestry Informative Markers in Different Populations 2008 0 10.2174/138920208784139528Oa logo
Gerasimos Dimisianos A study of a single variant allele (rs1426654) of the pigmentation-related gene SLC24A5 in Greek subjects. 2009 6 -
Tailce K M Leite Genomic ancestry, self-reported "color" and quantitative measures of skin pigmentation in brazilian admixed siblings. 2011 9 10.1371/journal.pone.0027162Oa logo
Tailce K M Leite Genomic ancestry, self-reported "color" and quantitative measures of skin pigmentation in Brazilian admixed siblings 2011 22 10.1371/journal.pone.0027162Oa logo
Anastassiya Zidkova Application of multifactor dimensionality reduction analysis and Bayesian networks for eye color and ancestry prediction for forensic purposes in the Czech Republic 2013 2 10.1016/j.fsigss.2013.10.164
S Wilson NCKX5, a natural regulator of human skin colour variation, regulates the expression of key pigment genes MC1R and alpha-MSH and alters cholesterol homeostasis in normal human melanocytes 2013 1 10.1007/978-1-4614-4756-6_9
Stephen Wilson NCKX5, a natural regulator of human skin colour variation, regulates the expression of key pigment genes MC1R and alpha-MSH and alters cholesterol homeostasis in normal human melanocytes. 2013 2 10.1007/978-1-4614-4756-6_9Oa logo

Evidence compiled by the Personal Genome Project

There are no results from the Personal Genome Project yet. Please come back later.

Publications listed by Genome.gov

There are no results from genome.gov yet. Please come back later.

Users who share this SNP:

Genome Browser