##fileformat=VCFv4.2 ##FILTER= ##ALT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GVCFBlock0-1=minGQ=0(inclusive),maxGQ=1(exclusive) ##GVCFBlock1-2=minGQ=1(inclusive),maxGQ=2(exclusive) ##GVCFBlock10-11=minGQ=10(inclusive),maxGQ=11(exclusive) ##GVCFBlock11-12=minGQ=11(inclusive),maxGQ=12(exclusive) ##GVCFBlock12-13=minGQ=12(inclusive),maxGQ=13(exclusive) ##GVCFBlock13-14=minGQ=13(inclusive),maxGQ=14(exclusive) ##GVCFBlock14-15=minGQ=14(inclusive),maxGQ=15(exclusive) ##GVCFBlock15-16=minGQ=15(inclusive),maxGQ=16(exclusive) ##GVCFBlock16-17=minGQ=16(inclusive),maxGQ=17(exclusive) ##GVCFBlock17-18=minGQ=17(inclusive),maxGQ=18(exclusive) ##GVCFBlock18-19=minGQ=18(inclusive),maxGQ=19(exclusive) ##GVCFBlock19-20=minGQ=19(inclusive),maxGQ=20(exclusive) ##GVCFBlock2-3=minGQ=2(inclusive),maxGQ=3(exclusive) ##GVCFBlock20-21=minGQ=20(inclusive),maxGQ=21(exclusive) ##GVCFBlock21-22=minGQ=21(inclusive),maxGQ=22(exclusive) ##GVCFBlock22-23=minGQ=22(inclusive),maxGQ=23(exclusive) ##GVCFBlock23-24=minGQ=23(inclusive),maxGQ=24(exclusive) ##GVCFBlock24-25=minGQ=24(inclusive),maxGQ=25(exclusive) ##GVCFBlock25-26=minGQ=25(inclusive),maxGQ=26(exclusive) ##GVCFBlock26-27=minGQ=26(inclusive),maxGQ=27(exclusive) ##GVCFBlock27-28=minGQ=27(inclusive),maxGQ=28(exclusive) ##GVCFBlock28-29=minGQ=28(inclusive),maxGQ=29(exclusive) ##GVCFBlock29-30=minGQ=29(inclusive),maxGQ=30(exclusive) ##GVCFBlock3-4=minGQ=3(inclusive),maxGQ=4(exclusive) ##GVCFBlock30-31=minGQ=30(inclusive),maxGQ=31(exclusive) ##GVCFBlock31-32=minGQ=31(inclusive),maxGQ=32(exclusive) ##GVCFBlock32-33=minGQ=32(inclusive),maxGQ=33(exclusive) ##GVCFBlock33-34=minGQ=33(inclusive),maxGQ=34(exclusive) ##GVCFBlock34-35=minGQ=34(inclusive),maxGQ=35(exclusive) ##GVCFBlock35-36=minGQ=35(inclusive),maxGQ=36(exclusive) ##GVCFBlock36-37=minGQ=36(inclusive),maxGQ=37(exclusive) ##GVCFBlock37-38=minGQ=37(inclusive),maxGQ=38(exclusive) ##GVCFBlock38-39=minGQ=38(inclusive),maxGQ=39(exclusive) ##GVCFBlock39-40=minGQ=39(inclusive),maxGQ=40(exclusive) ##GVCFBlock4-5=minGQ=4(inclusive),maxGQ=5(exclusive) ##GVCFBlock40-41=minGQ=40(inclusive),maxGQ=41(exclusive) ##GVCFBlock41-42=minGQ=41(inclusive),maxGQ=42(exclusive) ##GVCFBlock42-43=minGQ=42(inclusive),maxGQ=43(exclusive) ##GVCFBlock43-44=minGQ=43(inclusive),maxGQ=44(exclusive) ##GVCFBlock44-45=minGQ=44(inclusive),maxGQ=45(exclusive) ##GVCFBlock45-46=minGQ=45(inclusive),maxGQ=46(exclusive) ##GVCFBlock46-47=minGQ=46(inclusive),maxGQ=47(exclusive) ##GVCFBlock47-48=minGQ=47(inclusive),maxGQ=48(exclusive) ##GVCFBlock48-49=minGQ=48(inclusive),maxGQ=49(exclusive) ##GVCFBlock49-50=minGQ=49(inclusive),maxGQ=50(exclusive) ##GVCFBlock5-6=minGQ=5(inclusive),maxGQ=6(exclusive) ##GVCFBlock50-51=minGQ=50(inclusive),maxGQ=51(exclusive) ##GVCFBlock51-52=minGQ=51(inclusive),maxGQ=52(exclusive) ##GVCFBlock52-53=minGQ=52(inclusive),maxGQ=53(exclusive) ##GVCFBlock53-54=minGQ=53(inclusive),maxGQ=54(exclusive) ##GVCFBlock54-55=minGQ=54(inclusive),maxGQ=55(exclusive) ##GVCFBlock55-56=minGQ=55(inclusive),maxGQ=56(exclusive) ##GVCFBlock56-57=minGQ=56(inclusive),maxGQ=57(exclusive) ##GVCFBlock57-58=minGQ=57(inclusive),maxGQ=58(exclusive) ##GVCFBlock58-59=minGQ=58(inclusive),maxGQ=59(exclusive) ##GVCFBlock59-60=minGQ=59(inclusive),maxGQ=60(exclusive) ##GVCFBlock6-7=minGQ=6(inclusive),maxGQ=7(exclusive) ##GVCFBlock60-70=minGQ=60(inclusive),maxGQ=70(exclusive) ##GVCFBlock7-8=minGQ=7(inclusive),maxGQ=8(exclusive) ##GVCFBlock70-80=minGQ=70(inclusive),maxGQ=80(exclusive) ##GVCFBlock8-9=minGQ=8(inclusive),maxGQ=9(exclusive) ##GVCFBlock80-90=minGQ=80(inclusive),maxGQ=90(exclusive) ##GVCFBlock9-10=minGQ=9(inclusive),maxGQ=10(exclusive) ##GVCFBlock90-99=minGQ=90(inclusive),maxGQ=99(exclusive) ##GVCFBlock99-2147483647=minGQ=99(inclusive),maxGQ=2147483647(exclusive) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:////resources_bundle/reference_genome/hs37d5.fa ##source=GenotypeGVCFs ##FILTER= ##bcftools_filterVersion=1.6+htslib-1.6 ##bcftools_filterCommand=filter -s SNP_QD_filter -e 'TYPE="snp" & QD < 2.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= 60.0"> ##bcftools_filterCommand=filter -m + -s SNP_FS_filter -e 'TYPE="snp" & FS > 60.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= ##bcftools_filterCommand=filter -m + -s SNP_MQ_filter -e 'TYPE="snp" & MQ < 40.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= ##bcftools_filterCommand=filter -m + -s SNP_MQRankSum_filter -e 'TYPE="snp" & MQRankSum < -12.5'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= ##bcftools_filterCommand=filter -m + -s SNP_ReadPosRankSum_filter -e 'TYPE="snp" & ReadPosRankSum < -8.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= 5.0"> ##bcftools_filterCommand=filter -m + -s SNP_SOR_filter -e 'TYPE="snp" & SOR > 5.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= ##bcftools_filterCommand=filter -m + -s INDEL_QD_filter -e 'TYPE~"indel" & QD < 2.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= 200.0"> ##bcftools_filterCommand=filter -m + -s INDEL_FS_filter -e 'TYPE~"indel" & FS > 200.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= ##bcftools_filterCommand=filter -m + -s INDEL_ReadPosRankSum_filter -e 'TYPE~"indel" & ReadPosRankSum < -20.0'; Date=Thu Oct 15 20:20:26 2020 ##FILTER= 10.0"> ##bcftools_filterCommand=filter -m + -s INDEL_SOR_filter -e 'TYPE~"indel" & SOR > 10.0'; Date=Thu Oct 15 20:20:26 2020 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 23027_109577_20A 1 877831 rs6672356 T C 3979.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4008,375,0 1 881627 rs2272757 G A 2994.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.91;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3023,273,0 1 883625 rs4970378 A G 2510.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.19;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2539,234,0 1 887801 rs3828047 A G 5197.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5226,527,0 1 888639 rs3748596 T C 2918.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=30.72;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2947,285,0 1 888659 rs3748597 T C 2288.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=30.12;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2317,228,0 1 889158 rs13303056 G C 4735.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.68;SOR=0.896 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,106:106:99:1|1:889158_G_C:4764,322,0 1 889159 rs13302945 A C 4735.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.1;SOR=0.876 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,105:105:99:1|1:889158_G_C:4764,322,0 1 897325 rs4970441 G C 6959.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6988,686,0 1 899928 rs6677386 G C 5204.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=43.74;SOR=0.973 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,119:119:99:1|1:899928_G_C:5233,357,0 1 909238 rs3829740 G C 6386.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.41 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6415,615,0 1 911595 rs7417106 A G 5904.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5933,570,0 1 914333 rs13302979 C G 7575.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7604,726,0 1 914852 rs13303368 G C 13819.8 PASS AC=2;AF=1;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.02;SOR=0.726 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,307:307:99:1|1:914852_G_C:13848,945,0 1 914876 rs13302983 T C 14453.8 PASS AC=2;AF=1;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.89;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,337:337:99:1|1:914852_G_C:14482,1017,0 1 914940 rs13303033 T C 9295.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,293:293:99:9324,879,0 1 915227 rs13303355 A G 8710.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.03;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,256:256:99:8739,768,0 1 916549 rs6660139 A G 5689.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=1.596 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5718,522,0 1 935222 rs2298214 C A 9281.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9310,888,0 1 949654 rs8997 A G 7328.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.77;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,217:217:99:7357,652,0 1 977330 rs2799066 T C 6065.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.88;QD=32.97;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6094,552,0 1 978603 rs35881187 CCT C 6506.73 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.87;QD=43.67;SOR=1.314 GT:AD:DP:GQ:PL 1/1:0,149:149:99:6544,449,0 1 981931 rs2465128 A G 8536.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8565,840,0 1 982844 rs76264143 G C 8018.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8047,765,0 1 982941 rs3128102 T C 6524.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6553,626,0 1 982994 rs10267 T C 7613.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.39;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7642,684,0 1 984302 rs9442391 T C 9420.77 PASS AC=2;AF=1;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,334:334:99:9449,1000,0 1 985266 rs2275813 C T 3218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.318;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=10.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.709;SOR=0.961 GT:AD:DP:GQ:PL 0/1:150,123:273:99:3247,0,3925 1 986443 rs2710887 C T 4725.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4754,444,0 1 987200 rs9803031 C T 5635.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5664,531,0 1 990280 rs4275402 C T 9152.77 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,320:320:99:9181,957,0 1 1007203 rs4633229 A G 4985.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.02;SOR=1.706 GT:AD:DP:GQ:PL 1/1:0,151:151:99:5014,450,0 1 1007432 rs4333796 G A 7316.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7345,730,0 1 1115994 rs13376597 G A 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.015;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.309;SOR=0.815 GT:AD:DP:GQ:PL 0/1:95,90:185:99:2192,0,2276 1 1133077 rs2274789 A G 5149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DB;DP=463;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.405;SOR=0.59 GT:AD:DP:GQ:PL 0/1:247,211:458:99:5178,0,6123 1 1153113 rs12036216 G A 3470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-1.083;SOR=0.65 GT:AD:DP:GQ:PL 0/1:170,157:327:99:3499,0,4028 1 1158631 rs6603781 A G 3213.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3242,344,0 1 1167796 rs190796582 C T 1981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.661;SOR=0.886 GT:AD:DP:GQ:PL 0/1:75,88:163:99:2010,0,1566 1 1225899 rs79943571 G A 2102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.697;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.316;SOR=0.678 GT:AD:DP:GQ:PL 0/1:111,89:200:99:2131,0,2673 1 1246004 rs2296474 A G 1964.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.1;SOR=3.702 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1993,147,0 1 1247494 rs12103 T C 4566.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4595,426,0 1 1248329 rs56104163 G A 3282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.765;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.572;SOR=0.658 GT:AD:DP:GQ:PL 0/1:123,133:256:99:3311,0,3496 1 1249187 rs12142199 G A 4753.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4782,477,0 1 1254841 rs10907179 C G 5993.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=1.045 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6022,566,0 1 1262966 rs307349 C T 10163.8 PASS AC=2;AF=1;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,342:342:99:10192,1027,0 1 1263144 rs307350 G A 5682.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5711,540,0 1 1269554 rs307377 T C 10221.8 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,320:320:99:10250,960,0 1 1277533 rs307362 T C 3971.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.66;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,118:118:99:4000,354,0 1 1310074 rs2765035 C G 5302.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5331,549,0 1 1323143 rs35654872 CCT C 5300.73 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=44.54;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,119:119:99:5338,358,0 1 1334475 rs17851391 G C 4005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.874;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=8.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.801;SOR=0.425 GT:AD:DP:GQ:PL 0/1:145,147:292:99:4034,0,3987 1 1361555 rs1695848 T C 3782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.095;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=0.773;SOR=0.624 GT:AD:DP:GQ:PL 0/1:160,141:301:99:3811,0,3769 1 1361641 rs12030806 C T 3266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.946;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.415;SOR=0.765 GT:AD:DP:GQ:PL 0/1:160,139:299:99:3295,0,3869 1 1417696 rs819970 C G 8516.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.54;QD=33.27;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,256:258:99:8545,768,0 1 1479333 rs7533 A G 1573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=-0.633;SOR=0.779 GT:AD:DP:GQ:PL 0/1:48,63:111:99:1602,0,1196 1 1551927 rs7418389 T C 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.858;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=1.708;SOR=0.555 GT:AD:DP:GQ:PL 0/1:65,88:153:99:2253,0,1468 1 1558792 rs12755088 T C 4629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.447;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-1.383;SOR=0.607 GT:AD:DP:GQ:PL 0/1:193,185:378:99:4658,0,4630 1 1563789 rs74892851 C A 3812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.823;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=1.586;SOR=0.75 GT:AD:DP:GQ:PL 0/1:175,143:318:99:3841,0,4407 1 1564952 rs112177324 TG T 3408.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.931;QD=11;ReadPosRankSum=-0.719;SOR=0.886 GT:AD:DP:GQ:PL 0/1:171,139:310:99:3446,0,4447 1 1588717 rs61774959 G A 563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.5;MQ=58.15;MQRankSum=-1.153;QD=4.47;ReadPosRankSum=2.068;SOR=0.487 GT:AD:DP:GQ:PL 0/1:93,33:126:99:592,0,2554 1 1599888 rs2072923 A G 135.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.222;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=10.557;MLEAC=1;MLEAF=0.5;MQ=46.97;MQRankSum=3.08;QD=0.51;ReadPosRankSum=-1.083;SOR=0.951 GT:AD:DP:GQ:PL 0/1:233,32:265:99:164,0,5609 1 1635004 rs874516 T C 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.674;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.5;MQ=57.29;MQRankSum=-3.034;QD=11.03;ReadPosRankSum=1.961;SOR=0.776 GT:AD:DP:GQ:PL 0/1:103,82:185:99:2069,0,2563 1 1635749 rs55880629 C A 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.02;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.5;MQ=55.26;MQRankSum=-3.709;QD=9.38;ReadPosRankSum=-0.083;SOR=0.576 GT:AD:DP:GQ:PL 0/1:98,69:167:99:1595,0,2440 1 1636044 rs1059822 G A 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.5;MQ=54.57;MQRankSum=-4.354;QD=11.96;ReadPosRankSum=-0.309;SOR=0.942 GT:AD:DP:GQ:PL 0/1:60,61:121:99:1475,0,1337 1 1647928 rs1883424 A G 1398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.331;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.109;QD=10.14;ReadPosRankSum=0.672;SOR=0.586 GT:AD:DP:GQ:PL 0/1:77,61:138:99:1427,0,1903 1 1650807 rs1137005 T C 3953.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.78;QD=27.84;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3982,424,0 1 1650845 rs1059831 G A 3576.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.77;QD=27.1;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3605,394,0 1 1653028 rs16825265 C T 4419.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.08;QD=28.7;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4448,462,0 1 1666251 rs77655487 G A 1032.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.373;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=13.636;MLEAC=1;MLEAF=0.5;MQ=39.72;MQRankSum=-0.791;QD=10.65;ReadPosRankSum=0.157;SOR=0.603 GT:AD:DP:GQ:PL 0/1:52,45:97:99:1061,0,1102 1 1669748 rs115554296 A G 3147.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.968;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.5;MQ=56.03;MQRankSum=-13.847;QD=11.4;ReadPosRankSum=0.418;SOR=0.762 GT:AD:DP:GQ:PL 0/1:143,133:276:99:3176,0,5278 1 1670958 rs146637450 C G 1379.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=16.721;MLEAC=2;MLEAF=1;MQ=27.23;MQRankSum=-4.742;QD=29.36;ReadPosRankSum=-0.687;SOR=7.7 GT:AD:DP:GQ:PL 1/1:1,46:47:97:1408,97,0 1 1684347 rs150880809 C CCCT 4550.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.101;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.984;QD=18.35;ReadPosRankSum=2.562;SOR=0.931 GT:AD:DP:GQ:PL 0/1:127,121:256:99:4588,0,4800 1 1684472 rs7407 C T 3337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.175;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.916;QD=13.14;ReadPosRankSum=1.698;SOR=0.745 GT:AD:DP:GQ:PL 0/1:117,137:254:99:3366,0,2804 1 1686040 rs4751 G T 2541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-0.93;QD=10.17;ReadPosRankSum=-0.654;SOR=0.583 GT:AD:DP:GQ:PL 0/1:133,117:250:99:2570,0,3137 1 1696659 rs5021859 A G 4224.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=1.228 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4253,423,0 1 1846765 rs2247560 G A 1574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.158;SOR=0.7 GT:AD:DP:GQ:PL 0/1:87,67:154:99:1603,0,2026 1 1849529 rs28640257 A G 3166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=2.224;SOR=0.723 GT:AD:DP:GQ:PL 0/1:132,132:264:99:3195,0,3174 1 1850627 . CAGCGGCAGG C 4225.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.907;ClippingRankSum=0;DP=314;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=3.015;QD=16.51;ReadPosRankSum=0.411;SOR=0.644 GT:AD:DP:GQ:PL 0/1:143,113:256:99:4263,0,8241 1 1861582 rs2803295 C T 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.975;SOR=0.902 GT:AD:DP:GQ:PL 0/1:108,94:202:99:2325,0,2746 1 1873453 rs2748981 G A 2323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=3.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-0.153;SOR=0.97 GT:AD:DP:GQ:PL 0/1:83,91:174:99:2352,0,2263 1 1873514 rs2803326 A G 2874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.578;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=1.133;SOR=0.686 GT:AD:DP:GQ:PL 0/1:136,129:265:99:2903,0,2990 1 1873525 rs2803327 T C 2789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=2.332;SOR=0.656 GT:AD:DP:GQ:PL 0/1:142,132:274:99:2818,0,3182 1 1875858 rs2803336 C G 3030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.232;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.22;ReadPosRankSum=-0.36;SOR=0.797 GT:AD:DP:GQ:PGT:PID:PL 0/1:96,80:176:99:0|1:1875858_C_G:3059,0,4940 1 1875859 rs2803337 A G 3030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.259;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.32;ReadPosRankSum=-0.514;SOR=0.771 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,80:175:99:0|1:1875858_C_G:3059,0,4940 1 1956362 rs2376805 G A 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.997;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.57;ReadPosRankSum=0.218;SOR=0.582 GT:AD:DP:GQ:PL 0/1:31,44:75:99:1196,0,701 1 1957037 rs2229110 T C 1844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.849;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-0.408;SOR=0.785 GT:AD:DP:GQ:PL 0/1:77,72:149:99:1873,0,1967 1 1987993 rs12184 T C 5150.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5179,540,0 1 1991014 rs1878745 A G 2128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.21;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.321;SOR=0.767 GT:AD:DP:GQ:PL 0/1:107,99:206:99:2157,0,2492 1 2126139 rs6662296 C G 3247.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3276,330,0 1 2332391 rs12037485 C T 2177.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.394 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2206,215,0 1 2340173 rs146452560 C T 2011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.036;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=1.028;SOR=0.928 GT:AD:DP:GQ:PL 0/1:93,79:172:99:2040,0,2398 1 2340200 rs2494598 T C 5199.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.32;SOR=1.367 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5228,498,0 1 2418625 rs7512269 C T 1294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.529;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=8.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.581;SOR=1.391 GT:AD:DP:GQ:PL 0/1:62,55:117:99:1323,0,1517 1 2422614 rs2477699 G A 1071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=1.975;SOR=0.699 GT:AD:DP:GQ:PL 0/1:65,49:114:99:1100,0,1561 1 2430086 rs142848828 G GGTGGGGGCC 929.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.628;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.5;ReadPosRankSum=-0.851;SOR=0.846 GT:AD:DP:GQ:PL 0/1:34,26:60:99:967,0,1604 1 2430617 rs2296442 C T 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.438;SOR=0.511 GT:AD:DP:GQ:PL 0/1:89,92:181:99:2048,0,2188 1 2452569 rs2985862 T C 1659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.203;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.69;ReadPosRankSum=-0.908;SOR=0.662 GT:AD:DP:GQ:PL 0/1:48,65:113:99:1688,0,1005 1 2488153 rs4870 A G 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.233;SOR=0.821 GT:AD:DP:GQ:PL 0/1:98,78:176:99:1783,0,2431 1 2491264 . A G 4752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.121;ClippingRankSum=0;DP=439;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.861;SOR=0.617 GT:AD:DP:GQ:PL 0/1:244,193:437:99:4781,0,6214 1 2526746 rs3748816 A G 2131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.379;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=1.322;SOR=0.756 GT:AD:DP:GQ:PL 0/1:78,85:163:99:2160,0,1790 1 2528133 rs2843401 T C 2537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.713;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.351;SOR=0.607 GT:AD:DP:GQ:PL 0/1:90,100:190:99:2566,0,2168 1 2535613 rs4648562 C A 960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.795;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.88;ReadPosRankSum=-0.626;SOR=0.808 GT:AD:DP:GQ:PL 0/1:70,52:122:99:989,0,2117 1 2541269 rs10797440 A G 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.922;SOR=0.557 GT:AD:DP:GQ:PL 0/1:72,66:138:99:1640,0,1803 1 2560882 rs4648658 G A 2939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=6.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=1.644;SOR=0.398 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,89:226:99:0|1:2560882_G_A:2968,0,6335 1 2560903 rs4648659 T G 2908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.207;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=8.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.31;ReadPosRankSum=-1.058;SOR=0.327 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,83:190:99:0|1:2560882_G_A:2937,0,5680 1 2573199 rs4648662 A G 4008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.792;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=1.776;SOR=0.792 GT:AD:DP:GQ:PL 0/1:139,144:283:99:4037,0,3387 1 2938989 rs3795263 G A 3539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.249;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=3.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.166;SOR=0.793 GT:AD:DP:GQ:PL 0/1:166,150:316:99:3568,0,4040 1 3328358 rs870124 T C 10444.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10473,1029,0 1 3342128 rs41301967 G A 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.812;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-1.399;SOR=0.582 GT:AD:DP:GQ:PL 0/1:57,53:110:99:1194,0,1591 1 3342804 rs870171 G T 2964.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.69;SOR=1.531 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2993,264,0 1 3383898 rs6424078 A G 7600.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7629,761,0 1 3389727 rs2185639 C T 6344.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6373,659,0 1 3394456 rs4638054 T C 8267.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8296,866,0 1 3395039 rs10797395 G A 5585.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5614,575,0 1 3416449 rs7553399 C A 3823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.378;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.931;SOR=0.834 GT:AD:DP:GQ:PL 0/1:142,155:297:99:3852,0,3347 1 3428160 rs2820999 T G 2695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.653;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-0.074;SOR=0.615 GT:AD:DP:GQ:PL 0/1:105,102:207:99:2724,0,2480 1 3428608 rs11585362 G A 3397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.7;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.009;SOR=0.623 GT:AD:DP:GQ:PL 0/1:127,144:271:99:3426,0,3035 1 3496479 rs2794340 T C 2988.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3017,302,0 1 3544235 rs5772111 TA T 4014.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.174;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.958;QD=15.62;ReadPosRankSum=1.403;SOR=0.667 GT:AD:DP:GQ:PL 0/1:122,135:257:99:4052,0,3441 1 3545175 rs147637374 GTTCTGGGAGCTCCTCCCCC G 4573.73 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=44.41;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,103:103:99:4611,318,0 1 3548136 rs2760321 T C 10757.8 PASS AC=2;AF=1;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,360:360:99:10786,1080,0 1 3599750 rs57492244 TG T 2747.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.926;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=2.807;SOR=0.696 GT:AD:DP:GQ:PL 0/1:113,111:224:99:2785,0,2857 1 3607520 rs3765730 G A 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.926;SOR=0.447 GT:AD:DP:GQ:PL 0/1:103,84:187:99:2094,0,2911 1 3638674 rs1801174 C T 9015.77 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.835 GT:AD:DP:GQ:PL 1/1:0,315:315:99:9044,942,0 1 3644349 rs2181486 A G 2956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.427;SOR=0.749 GT:AD:DP:GQ:PL 0/1:144,139:283:99:2985,0,3564 1 3669201 rs10797410 A G 4764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.202;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.85;ReadPosRankSum=1.338;SOR=0.896 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,125:267:99:0|1:3669201_A_G:4793,0,7572 1 3669205 rs10910021 C G 4860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.94;ReadPosRankSum=-0.884;SOR=0.816 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,128:271:99:0|1:3669201_A_G:4889,0,7582 1 3677933 rs1181883 T C 2276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-1.957;SOR=0.615 GT:AD:DP:GQ:PL 0/1:96,96:192:99:2305,0,2268 1 3679775 rs10910024 C T 2949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=13.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-0.78;SOR=0.857 GT:AD:DP:GQ:PL 0/1:122,126:248:99:2978,0,3071 1 3747603 rs6413779 T C 4765.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4794,492,0 1 3755675 rs1891941 T C 4041.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.09;SOR=2.1 GT:AD:DP:GQ:PL 1/1:0,112:112:99:4070,336,0 1 3806643 rs4520357 T A 585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.879;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=0.449;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,27:71:99:0|1:3806643_T_A:614,0,934 1 3807122 rs7513321 G A 2297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=2.401;SOR=0.577 GT:AD:DP:GQ:PL 0/1:104,99:203:99:2326,0,2602 1 3807388 rs4131373 G A 3088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.642;SOR=0.709 GT:AD:DP:GQ:PL 0/1:140,137:277:99:3117,0,3521 1 3807593 rs4274008 G C 6018.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6047,603,0 1 4772717 rs242056 G A 8421.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8450,829,0 1 5935162 rs1287637 A T 3684.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.67 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3713,354,0 1 5937168 rs3747992 G A 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.236;SOR=0.598 GT:AD:DP:GQ:PL 0/1:97,91:188:99:2104,0,2475 1 6142308 rs2227911 T C 2371.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2400,230,0 1 6184092 rs2843493 A G 5910.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5939,581,0 1 6184728 . T TG 59.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.523;ClippingRankSum=-0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=4.98;ReadPosRankSum=0.076;SOR=0.446 GT:AD:DP:GQ:PL 0/1:7,5:12:97:97,0,158 1 6190315 rs17029184 C T 1606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=-1.931;SOR=0.663 GT:AD:DP:GQ:PL 0/1:104,71:175:99:1635,0,2535 1 6196869 rs2250358 A G 5440.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5469,527,0 1 6196943 rs2746066 A G 4322.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.8;SOR=1.496 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,101:101:99:1|1:6196943_A_G:4351,304,0 1 6202245 rs2273032 G A 2170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.372;SOR=0.698 GT:AD:DP:GQ:PL 0/1:94,92:186:99:2199,0,2307 1 6209363 rs12565328 T C 9464.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,295:295:99:9493,885,0 1 6211183 rs9434711 G A 6331.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6360,673,0 1 6215736 rs12074369 C G 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.162;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.957;SOR=0.925 GT:AD:DP:GQ:PL 0/1:93,61:154:99:1490,0,2139 1 6305292 rs61760836 C A 5133.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.26;SOR=1.003 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,116:116:99:1|1:6305292_C_A:5162,352,0 1 6305303 rs61760837 C A 5284.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.04;SOR=0.91 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:6305292_C_A:5313,367,0 1 6313938 rs12735670 C T 8685.77 PASS AC=2;AF=1;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,301:301:99:8714,901,0 1 6314822 rs11590458 T C 5597.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5626,545,0 1 6501044 rs2311045 C G 2729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.621;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.493;SOR=0.616 GT:AD:DP:GQ:PL 0/1:119,114:233:99:2758,0,2852 1 6524501 rs11800462 T C 3073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.386;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=9.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-2.536;SOR=0.856 GT:AD:DP:GQ:PL 0/1:142,112:254:99:3102,0,3956 1 6526183 rs3007417 G A 3611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.476;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.402;SOR=0.594 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,105:285:99:0|1:6526183_G_A:3640,0,7178 1 6528589 rs3138150 C T 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=1.219;SOR=0.814 GT:AD:DP:GQ:PL 0/1:89,69:158:99:1595,0,2141 1 6529182 rs113541584 TTCC T 3202.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.243;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.95;ReadPosRankSum=0.676;SOR=0.864 GT:AD:DP:GQ:PL 0/1:85,84:175:99:3240,0,3344 1 6529443 rs730600 A G 1555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.773;SOR=0.488 GT:AD:DP:GQ:PL 0/1:68,68:136:99:1584,0,1845 1 6530435 rs2986753 A G 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.36;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.93;ReadPosRankSum=1.372;SOR=0.693 GT:AD:DP:GQ:PL 0/1:68,74:142:99:2148,0,1626 1 6531589 rs74809741 C T 2104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=-2.626;SOR=0.719 GT:AD:DP:GQ:PL 0/1:121,94:215:99:2133,0,3086 1 6533393 rs61741379 G C 1858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.942;SOR=0.77 GT:AD:DP:GQ:PL 0/1:94,79:173:99:1887,0,2432 1 6545390 rs75490131 A T 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.193;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.097;SOR=0.652 GT:AD:DP:GQ:PL 0/1:83,67:150:99:1605,0,1957 1 6557009 rs3007430 A C 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.111;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.25;SOR=0.812 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1502,0,1703 1 6586070 rs7548042 C T 2558.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2587,258,0 1 6614391 rs6693391 A C 8766.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.5;SOR=0.81 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,197:197:99:1|1:6614391_A_C:8795,623,0 1 6614415 rs6693400 A G 8934.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.56;SOR=0.74 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,215:215:99:1|1:6614391_A_C:8963,650,0 1 6614526 rs12742808 A G 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.035;SOR=0.549 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,105:229:99:0|1:6614526_A_G:2433,0,3004 1 6614535 rs4908923 G A 7990.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.17;SOR=0.974 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,215:215:99:1|1:6614526_A_G:8019,664,0 1 6635231 rs10864628 A G 9276.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,282:282:99:9305,846,0 1 6635306 rs34160967 G A 3032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=1.007;SOR=0.585 GT:AD:DP:GQ:PL 0/1:134,126:260:99:3061,0,3448 1 6636461 rs17492553 C T 1368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.724;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.56;ReadPosRankSum=-0.899;SOR=1.033 GT:AD:DP:GQ:PL 0/1:42,52:94:99:1397,0,949 1 6659505 rs2232460 G A 1821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.162;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=1.236;SOR=0.945 GT:AD:DP:GQ:PL 0/1:107,73:180:99:1850,0,2537 1 6662796 . G A 5840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.377;ClippingRankSum=0;DP=291;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.07;ReadPosRankSum=-1.442;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,155:291:99:0|1:6662796_G_A:5869,0,6866 1 6662797 . C T 5840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.04;ClippingRankSum=0;DP=291;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.07;ReadPosRankSum=-1.662;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,155:291:99:0|1:6662796_G_A:5869,0,6866 1 6693097 rs3174820 A G 3343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-3.573;QD=10.35;ReadPosRankSum=0.528;SOR=0.827 GT:AD:DP:GQ:PL 0/1:179,144:323:99:3372,0,4414 1 6704635 rs200458 A G 3186.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3215,327,0 1 6705874 rs200454 G C 2100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.332;SOR=0.687 GT:AD:DP:GQ:PL 0/1:105,91:196:99:2129,0,2742 1 7723534 rs3737907 G A 2552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.642;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=0.511;SOR=0.651 GT:AD:DP:GQ:PL 0/1:143,109:252:99:2581,0,3575 1 7723957 rs12128526 G A 2982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.685;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.035;SOR=0.659 GT:AD:DP:GQ:PL 0/1:115,115:230:99:3011,0,2899 1 7737651 rs41278946 G A 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-1.13;SOR=0.845 GT:AD:DP:GQ:PL 0/1:74,92:166:99:2093,0,1620 1 7737799 rs3011926 A G 2079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.564;SOR=0.652 GT:AD:DP:GQ:PL 0/1:83,90:173:99:2108,0,1895 1 7833485 rs11576572 G A 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=5.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=-2.522;SOR=0.277 GT:AD:DP:GQ:PL 0/1:33,48:81:99:1105,0,817 1 7861153 rs34433622 C CT 1555.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.168;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.37;ReadPosRankSum=-1.615;SOR=1.14 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1593,126,0 1 7870048 rs228669 T C 4755.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4784,480,0 1 7880683 rs10462020 T G 1059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.474;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=1.157;SOR=0.944 GT:AD:DP:GQ:PL 0/1:75,46:121:99:1088,0,1711 1 7887493 rs228696 T C 5902.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5931,593,0 1 7890064 rs12023156 A G 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.059;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=2.894;QD=9.61;ReadPosRankSum=-0.268;SOR=0.571 GT:AD:DP:GQ:PL 0/1:115,83:198:99:1931,0,4458 1 7890117 rs2640909 T C 3391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.088;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=7.551;MLEAC=1;MLEAF=0.5;MQ=59.2;MQRankSum=-2.74;QD=14.75;ReadPosRankSum=0.774;SOR=1.033 GT:AD:DP:GQ:PL 0/1:91,139:230:99:3420,0,2569 1 7897133 rs10462021 A G 1069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.216;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=0.582;SOR=0.579 GT:AD:DP:GQ:PL 0/1:64,48:112:99:1098,0,1469 1 7913430 rs228648 G A 2090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.592;SOR=0.554 GT:AD:DP:GQ:PL 0/1:91,94:185:99:2119,0,2036 1 8390495 rs1058619 A G 6684.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6713,691,0 1 8404093 rs1055236 C T 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.622;SOR=0.618 GT:AD:DP:GQ:PL 0/1:80,70:150:99:1600,0,1886 1 8418644 rs11121172 C A 3963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=0.444;SOR=0.801 GT:AD:DP:GQ:PGT:PID:PL 0/1:170,109:279:99:0|1:8418644_C_A:3992,0,9313 1 8418650 rs1058766 T C 4001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.248;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=0.657;SOR=0.646 GT:AD:DP:GQ:PGT:PID:PL 0/1:174,111:285:99:0|1:8418644_C_A:4030,0,9324 1 8421092 rs2784735 C T 3423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.48;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=1.008;SOR=0.738 GT:AD:DP:GQ:PL 0/1:168,159:327:99:3452,0,4263 1 8421203 rs13596 T C 3570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.167;SOR=0.752 GT:AD:DP:GQ:PL 0/1:145,141:286:99:3599,0,3607 1 8926329 rs2781066 C T 1054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.803;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=4.444;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-1.071;QD=14.06;ReadPosRankSum=2.641;SOR=1.412 GT:AD:DP:GQ:PL 0/1:34,41:75:99:1083,0,997 1 9009406 rs2274327 C T 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.056;SOR=0.504 GT:AD:DP:GQ:PL 0/1:74,70:144:99:1610,0,1842 1 9009444 rs2274328 A C 1831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.409;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-1.598;SOR=0.595 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1860,0,1817 1 9017204 rs2274333 A G 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.218;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-1.425;SOR=0.905 GT:AD:DP:GQ:PL 0/1:81,72:153:99:1738,0,1803 1 9030964 rs3737665 C T 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.661;SOR=0.588 GT:AD:DP:GQ:PL 0/1:51,50:101:99:1084,0,1187 1 9034421 rs3765964 G A 1084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.399;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-2.166;SOR=0.582 GT:AD:DP:GQ:PL 0/1:70,49:119:99:1113,0,1692 1 9074861 rs12402973 C T 3912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.235;SOR=0.693 GT:AD:DP:GQ:PL 0/1:148,170:318:99:3941,0,3431 1 9074932 rs1556757 G A 3268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.943;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=0.348;SOR=0.506 GT:AD:DP:GQ:PL 0/1:112,130:242:99:3297,0,2534 1 9304978 rs139855605 CCCCAGGCA C 766.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.046;SOR=0.31 GT:AD:DP:GQ:PL 0/1:54,23:77:99:804,0,2294 1 9307033 rs7524046 G A 571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.539;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.33;ReadPosRankSum=0.932;SOR=0.624 GT:AD:DP:GQ:PL 0/1:48,30:78:99:600,0,1099 1 9307138 rs11121350 T C 632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.121;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=-0.385;SOR=0.535 GT:AD:DP:GQ:PL 0/1:41,31:72:99:661,0,1038 1 9323885 rs148535734 G A 1616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.79;ReadPosRankSum=-2.08;SOR=0.743 GT:AD:DP:GQ:PL 0/1:158,80:238:99:1645,0,4222 1 9323910 rs6688832 G A 1836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.75;ReadPosRankSum=-2.485;SOR=0.762 GT:AD:DP:GQ:PL 0/1:154,83:237:99:1865,0,4027 1 9324571 rs9434742 T C 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.019;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.67;ReadPosRankSum=0.853;SOR=0.729 GT:AD:DP:GQ:PL 0/1:162,81:244:99:1893,0,4150 1 9324670 rs9434743 A G 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.686;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=3.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.24;ReadPosRankSum=-0.514;SOR=0.766 GT:AD:DP:GQ:PL 0/1:172,79:251:99:1845,0,4527 1 9416151 rs9435243 G A 9894.77 PASS AC=2;AF=1;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,329:329:99:9923,987,0 1 9599823 rs148840119 A G 1984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.906;SOR=0.715 GT:AD:DP:GQ:PL 0/1:72,89:161:99:2013,0,1532 1 9670834 rs4926472 C T 4066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.438;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=2.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=2.183;SOR=0.859 GT:AD:DP:GQ:PL 0/1:153,160:313:99:4095,0,3639 1 10041298 . AT A 286.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0;DP=148;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.35;ReadPosRankSum=-0.166;SOR=0.595 GT:AD:DP:GQ:PL 0/1:94,28:131:99:324,0,2137 1 10161264 rs41280790 G A 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.714;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-1.757;SOR=0.755 GT:AD:DP:GQ:PL 0/1:67,48:115:99:1095,0,1600 1 10190884 rs2295294 A T 624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.196;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=0.839;SOR=0.472 GT:AD:DP:GQ:PL 0/1:57,30:87:99:653,0,1364 1 10218439 rs2273299 T C 1263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.326;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.26;ReadPosRankSum=-0.901;SOR=0.817 GT:AD:DP:GQ:PL 0/1:92,61:153:99:1292,0,2131 1 10238770 rs7546642 A G 2622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.254;SOR=0.867 GT:AD:DP:GQ:PL 0/1:120,122:242:99:2651,0,2553 1 10421878 rs12125492 A G 1431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-1.397;SOR=0.677 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1460,0,1449 1 10459674 rs56014054 C T 736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.926;SOR=0.602 GT:AD:DP:GQ:PL 0/1:36,34:70:99:765,0,981 1 10502307 rs33919161 AT A 4093.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.66;ReadPosRankSum=0;SOR=1.54 GT:AD:DP:GQ:PL 1/1:2,164:169:99:4131,449,0 1 10511589 rs666103 T C 12962.8 PASS AC=2;AF=1;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,452:452:99:12991,1354,0 1 10678488 rs284238 A T 712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=0.589;SOR=0.665 GT:AD:DP:GQ:PL 0/1:42,34:76:99:741,0,994 1 10703203 rs146039805 G GC 3225.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=10.718;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.252;QD=16.21;ReadPosRankSum=1.242;SOR=0.307 GT:AD:DP:GQ:PL 0/1:99,100:199:99:3263,0,3200 1 10708142 rs778228 A G 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.684;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=0.169;SOR=0.984 GT:AD:DP:GQ:PL 0/1:82,88:170:99:2373,0,1979 1 10709267 rs12143134 C T 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.709;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=6.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.803;SOR=0.692 GT:AD:DP:GQ:PL 0/1:122,99:221:99:2469,0,2842 1 10709441 rs284299 C T 2251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.161;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-2.042;SOR=0.645 GT:AD:DP:GQ:PL 0/1:79,91:170:99:2280,0,1756 1 10713765 rs284294 T C 3642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.724;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.75;ReadPosRankSum=-0.522;SOR=0.534 GT:AD:DP:GQ:PL 0/1:112,135:247:99:3671,0,2675 1 10725498 rs284322 G A 3246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.581;SOR=0.695 GT:AD:DP:GQ:PL 0/1:142,132:274:99:3275,0,3514 1 11087524 rs1782455 G A 1326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.236;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=7.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=0.137;SOR=1.029 GT:AD:DP:GQ:PL 0/1:97,63:160:99:1355,0,2316 1 11090916 rs12711521 C A 1703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.009;SOR=0.905 GT:AD:DP:GQ:PL 0/1:82,77:159:99:1732,0,2177 1 11119899 rs7545802 T C 5636.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5665,590,0 1 11133984 rs145888478 C T 363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=-0.786;QD=8.27;ReadPosRankSum=1.254;SOR=0.61 GT:AD:DP:GQ:PL 0/1:26,18:44:99:392,0,678 1 11140620 . A AACAC 211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.003;ClippingRankSum=0;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.26;MQRankSum=-1.473;QD=4.92;ReadPosRankSum=1.413;SOR=0.741 GT:AD:DP:GQ:PL 0/1:30,13:63:99:240,0,1761 1 11181327 rs11121691 C T 7168.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7197,747,0 1 11190646 rs2275527 G A 13135.8 PASS AC=2;AF=1;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,465:465:99:13164,1394,0 1 11561593 rs2817580 G A 3550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-0.779;SOR=0.682 GT:AD:DP:GQ:PL 0/1:187,144:331:99:3579,0,4952 1 11579470 rs2072994 G A 2186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.219;SOR=0.698 GT:AD:DP:GQ:PL 0/1:108,94:202:99:2215,0,2664 1 11579504 rs2072993 G C 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.053;SOR=0.748 GT:AD:DP:GQ:PL 0/1:99,108:207:99:2751,0,2374 1 11589911 rs2076468 G A 3979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=5.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.139;SOR=0.771 GT:AD:DP:GQ:PL 0/1:147,161:308:99:4008,0,3595 1 11596762 rs2235666 C T 2573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.054;SOR=0.75 GT:AD:DP:GQ:PL 0/1:127,114:241:99:2602,0,3187 1 11708736 rs1055547 T C 7301.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7330,696,0 1 11710561 rs9614 T G 3297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.801;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=3.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.966;SOR=0.787 GT:AD:DP:GQ:PL 0/1:122,129:251:99:3326,0,2833 1 11714368 rs2272983 T G 4041.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4070,399,0 1 11771988 rs17037327 A G 2662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=0.254;SOR=0.575 GT:AD:DP:GQ:PL 0/1:80,112:192:99:2691,0,1709 1 11826630 rs6668699 C T 4825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.146;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-1.033;SOR=0.71 GT:AD:DP:GQ:PL 0/1:238,211:449:99:4854,0,5936 1 11827304 rs6540996 A G 5524.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5553,528,0 1 11828238 rs4845880 G A 3077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.541;SOR=0.597 GT:AD:DP:GQ:PL 0/1:132,133:265:99:3106,0,3217 1 11828319 rs4845881 G A 2593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.723;SOR=0.576 GT:AD:DP:GQ:PL 0/1:130,112:242:99:2622,0,3212 1 11831615 rs6667720 C T 2200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.961;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-1.298;SOR=0.708 GT:AD:DP:GQ:PL 0/1:93,101:194:99:2229,0,2454 1 11832289 rs61773952 C A 2701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.436;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=1.45;SOR=0.628 GT:AD:DP:GQ:PL 0/1:125,116:241:99:2730,0,3256 1 11832311 rs10779764 G C 2513.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.816;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-1.496;SOR=0.631 GT:AD:DP:GQ:PL 0/1:102,93:195:99:2542,0,2703 1 11836628 rs6699881 T C 3370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.78;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.816;SOR=0.71 GT:AD:DP:GQ:PL 0/1:191,150:341:99:3399,0,4417 1 11836682 rs7538516 C T 2770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.784;SOR=0.574 GT:AD:DP:GQ:PL 0/1:132,120:252:99:2799,0,3281 1 11838848 rs6697244 G T 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.063;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-1.316;SOR=0.488 GT:AD:DP:GQ:PL 0/1:133,116:249:99:2670,0,3509 1 11839850 rs140897322 CT C 2679.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=2.14;QD=15.58;ReadPosRankSum=-1.992;SOR=0.767 GT:AD:DP:GQ:PL 0/1:81,91:172:99:2717,0,2278 1 11839966 rs4846043 G A 3502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-2.205;QD=11.23;ReadPosRankSum=0.305;SOR=0.602 GT:AD:DP:GQ:PL 0/1:159,153:312:99:3531,0,6156 1 11839972 rs41275462 G A 3794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.631;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=2.232;QD=12.05;ReadPosRankSum=-0.606;SOR=0.729 GT:AD:DP:GQ:PL 0/1:156,159:315:99:3823,0,5943 1 11839998 rs4846044 T C 10145.8 PASS AC=2;AF=1;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=30.2;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,336:336:99:10174,1008,0 1 11844214 rs12135232 A T 1539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.305;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=1.674;SOR=1.198 GT:AD:DP:GQ:PL 0/1:77,58:135:99:1568,0,1984 1 11844330 rs10864543 C T 3639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.826;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=0.386;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.931;SOR=0.734 GT:AD:DP:GQ:PL 0/1:217,153:370:99:3668,0,5222 1 11849447 rs868014 A G 9084.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,315:315:99:9113,944,0 1 11854457 rs4846051 G A 4370.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.12;SOR=0.85 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:11854457_G_A:4399,364,0 1 11854476 rs1801131 T G 1616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.67;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.183;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.302;SOR=0.933 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,63:135:99:0|1:11854457_G_A:1645,0,1616 1 11856378 rs1801133 G A 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.826;SOR=0.651 GT:AD:DP:GQ:PL 0/1:62,70:132:99:1708,0,1554 1 11884555 rs198400 A G 3637.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.983 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3666,392,0 1 11983091 rs61776478 C T 2774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.99;MQRankSum=-1.779;QD=12.22;ReadPosRankSum=1.43;SOR=0.667 GT:AD:DP:GQ:PL 0/1:108,119:227:99:2803,0,2656 1 11983206 rs3795408 A G 6869.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.27;QD=31.23;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6898,660,0 1 12009955 rs7529452 C T 1402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.995;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.437;SOR=0.898 GT:AD:DP:GQ:PL 0/1:62,59:121:99:1431,0,1475 1 12024235 rs1130529 C T 3239.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3268,317,0 1 12082334 rs11553925 A T 3297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=1.723;SOR=0.732 GT:AD:DP:GQ:PL 0/1:164,150:314:99:3326,0,3974 1 12082461 rs11588712 C T 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=0.364;SOR=0.537 GT:AD:DP:GQ:PL 0/1:110,66:176:99:1562,0,2963 1 12082881 rs11588779 C T 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.266;SOR=0.846 GT:AD:DP:GQ:PL 0/1:41,51:92:99:1145,0,924 1 12082926 rs2295283 A G 3424.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3453,348,0 1 12175729 rs1763642 C T 6144.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6173,608,0 1 12339619 rs4845898 A T 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-0.692;SOR=0.571 GT:AD:DP:GQ:PL 0/1:76,83:159:99:1734,0,1683 1 12401868 rs28551666 A C 3853.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3882,381,0 1 12446236 . C T 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=2.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=-0.841;SOR=0.462 GT:AD:DP:GQ:PL 0/1:70,39:109:99:878,0,1809 1 12638964 rs2275875 T C 3551.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3580,342,0 1 12776344 rs3000859 A T 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=-0.795;SOR=0.582 GT:AD:DP:GQ:PL 0/1:49,70:119:99:1716,0,1122 1 12779560 rs3010876 T C 5952.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5981,597,0 1 12779618 rs3010877 T C 5590.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5619,584,0 1 12785494 rs7513079 G T 6159.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6188,606,0 1 12820870 rs1132185 T C 5672.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5701,531,0 1 12835868 rs1812242 T C 6621.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6650,657,0 1 12837463 rs112368379 C T 5366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.698;ClippingRankSum=0;DB;DP=495;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58;MQRankSum=-10.362;QD=10.84;ReadPosRankSum=0.097;SOR=0.694 GT:AD:DP:GQ:PL 0/1:269,226:495:99:5395,0,6567 1 12837634 rs848578 T A 10077.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.927;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.82;ReadPosRankSum=0.316;SOR=0.341 GT:AD:DP:GQ:PL 1/1:1,337:338:99:10106,1003,0 1 12853403 rs1737157 A C 4252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.564;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.5;MQ=54.56;MQRankSum=-12.075;QD=10.88;ReadPosRankSum=-3.226;SOR=0.783 GT:AD:DP:GQ:PL 0/1:230,161:391:99:4281,0,5508 1 12854052 rs78573959 C T 7948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.165;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.81;MQRankSum=-10.683;QD=17.59;ReadPosRankSum=4.88;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:234,218:452:99:0|1:12854021_G_T:7977,0,8724 1 12854090 rs79698223 T A 9600.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.308;ClippingRankSum=0;DB;DP=597;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=50.4;MQRankSum=-15.924;QD=16.08;ReadPosRankSum=2.02;SOR=0.582 GT:AD:DP:GQ:PGT:PID:PL 0/1:341,256:597:99:0|1:12854090_T_A:9629,0,13831 1 12854097 rs76193255 T C 9640.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0;DB;DP=618;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.5;MQ=50.71;MQRankSum=-16.409;QD=15.6;ReadPosRankSum=1.52;SOR=0.565 GT:AD:DP:GQ:PGT:PID:PL 0/1:362,256:618:99:0|1:12854090_T_A:9669,0,14515 1 12854105 rs76648802 A G 9452.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0;DB;DP=641;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.5;MQ=51.02;MQRankSum=-16.769;QD=14.75;ReadPosRankSum=-0.516;SOR=0.568 GT:AD:DP:GQ:PGT:PID:PL 0/1:388,253:641:99:0|1:12854090_T_A:9481,0,15159 1 12854162 rs199893374 C T 3045.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.895;ClippingRankSum=0;DB;DP=620;ExcessHet=3.0103;FS=16.931;MLEAC=1;MLEAF=0.5;MQ=51.24;MQRankSum=-18.593;QD=4.92;ReadPosRankSum=-2.777;SOR=1.412 GT:AD:DP:GQ:PL 0/1:471,148:619:99:3074,0,12319 1 12854188 rs76030350 T C 4395.77 SNP_MQRankSum_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.001;ClippingRankSum=0;DB;DP=675;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=48.38;MQRankSum=-20.144;QD=6.52;ReadPosRankSum=-8.237;SOR=0.616 GT:AD:DP:GQ:PL 0/1:465,209:674:99:4424,0,11942 1 12854272 rs61775050 T C 6206.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=820;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.5;MQ=43.28;MQRankSum=-17.547;QD=7.59;ReadPosRankSum=-1.081;SOR=0.649 GT:AD:DP:GQ:PL 0/1:502,316:818:99:6235,0,12119 1 12854356 rs61775051 T C 4623.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.332;ClippingRankSum=0;DB;DP=551;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.5;MQ=48.6;MQRankSum=-19.946;QD=8.39;ReadPosRankSum=0.367;SOR=0.931 GT:AD:DP:GQ:PL 0/1:347,204:551:99:4652,0,9006 1 12854414 rs1063769 G A 5577.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.502;ClippingRankSum=0;DB;DP=584;ExcessHet=3.0103;FS=4.967;MLEAC=1;MLEAF=0.5;MQ=52.9;MQRankSum=-15.877;QD=9.6;ReadPosRankSum=-3.447;SOR=1.041 GT:AD:DP:GQ:PL 0/1:310,271:581:99:5606,0,7823 1 12854428 rs1769774 C T 2954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0;DB;DP=571;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=53.79;MQRankSum=5.125;QD=5.18;ReadPosRankSum=-0.933;SOR=0.795 GT:AD:DP:GQ:PL 0/1:414,156:570:99:2983,0,10326 1 12854474 rs1063774 A C 7855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0;DB;DP=539;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.5;MQ=54.31;MQRankSum=-11.455;QD=14.57;ReadPosRankSum=5.673;SOR=0.989 GT:AD:DP:GQ:PGT:PID:PL 0/1:326,213:539:99:0|1:12854474_A_C:7884,0,12898 1 12854479 rs1063775 C G 7811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.011;ClippingRankSum=0;DB;DP=537;ExcessHet=3.0103;FS=4.196;MLEAC=1;MLEAF=0.5;MQ=54.47;MQRankSum=-11.44;QD=14.55;ReadPosRankSum=3.935;SOR=1.022 GT:AD:DP:GQ:PGT:PID:PL 0/1:327,210:537:99:0|1:12854474_A_C:7840,0,13079 1 12854530 rs1063776 C G 16270.8 PASS AC=2;AF=1;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.7;QD=38.93;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,418:418:99:16299,1291,0 1 12854544 rs1063778 T C 4475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.084;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=8.13;MLEAC=1;MLEAF=0.5;MQ=56.31;MQRankSum=-10.111;QD=13.24;ReadPosRankSum=-3.05;SOR=1.059 GT:AD:DP:GQ:PL 0/1:177,161:338:99:4504,0,4232 1 12855720 rs113708906 C T 4478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.386;ClippingRankSum=0;DB;DP=369;ExcessHet=3.0103;FS=14.773;MLEAC=1;MLEAF=0.5;MQ=48.78;MQRankSum=-0.188;QD=12.14;ReadPosRankSum=1.364;SOR=1.256 GT:AD:DP:GQ:PL 0/1:199,170:369:99:4507,0,5040 1 12855835 rs1063795 C G 19777.8 PASS AC=2;AF=1;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.37;QD=44.54;SOR=0.868 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,444:444:99:1|1:12855835_C_G:19806,1348,0 1 12855845 rs1063797 G C 19878.8 PASS AC=2;AF=1;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.09;QD=44.67;SOR=0.894 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,445:445:99:1|1:12855835_C_G:19907,1348,0 1 12855878 rs1052908 A C 3101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.337;ClippingRankSum=0;DB;DP=404;ExcessHet=3.0103;FS=33.734;MLEAC=1;MLEAF=0.5;MQ=46.07;MQRankSum=1.237;QD=7.7;ReadPosRankSum=-0.895;SOR=1.91 GT:AD:DP:GQ:PL 0/1:273,130:403:99:3130,0,7362 1 12855884 rs78124722 C T 633.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.664;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=64.188;MLEAC=1;MLEAF=0.5;MQ=45.65;MQRankSum=-7.379;QD=1.53;ReadPosRankSum=-3.947;SOR=7.378 GT:AD:DP:GQ:PL 0/1:375,39:414:99:662,0,15511 1 12855891 . A AGGGG 301.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DP=403;ExcessHet=3.0103;FS=75.746;MLEAC=1;MLEAF=0.5;MQ=44.07;MQRankSum=-7.555;QD=0.75;ReadPosRankSum=-4.536;SOR=7.658 GT:AD:DP:GQ:PGT:PID:PL 0/1:358,45:403:99:0|1:12855891_A_AGGGG:339,0,15137 1 12855892 . TTGAC T 295.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.989;ClippingRankSum=0;DP=417;ExcessHet=3.0103;FS=74.12;MLEAC=1;MLEAF=0.5;MQ=43.48;MQRankSum=-7.613;QD=0.72;ReadPosRankSum=-3.062;SOR=7.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:362,47:409:99:0|1:12855891_A_AGGGG:333,0,15178 1 12856010 rs61775053 C G 15670.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.678;ClippingRankSum=0;DB;DP=1314;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.21;MQRankSum=-15.021;QD=11.94;ReadPosRankSum=0.766;SOR=0.713 GT:AD:DP:GQ:PL 0/1:584,729:1313:99:15699,0,12877 1 12856111 rs61775054 C T 11619.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.217;ClippingRankSum=0;DB;DP=963;ExcessHet=3.0103;FS=6.235;MLEAC=1;MLEAF=0.5;MQ=44.51;MQRankSum=-12.774;QD=12.07;ReadPosRankSum=-0.769;SOR=1.139 GT:AD:DP:GQ:PL 0/1:468,495:963:99:11648,0,10721 1 12856146 rs1974302 G A 835.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=476;ExcessHet=3.0103;FS=6.05;MLEAC=1;MLEAF=0.5;MQ=42.92;MQRankSum=-3.148;QD=1.76;ReadPosRankSum=1.83;SOR=0.276 GT:AD:DP:GQ:PL 0/1:404,71:475:99:864,0,13638 1 12856153 rs61775055 G A 4473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=14.379;MLEAC=1;MLEAF=0.5;MQ=42.4;MQRankSum=-5.444;QD=11.05;ReadPosRankSum=-4.727;SOR=1.642 GT:AD:DP:GQ:PL 0/1:225,180:405:99:4502,0,6725 1 12887174 rs61777003 C T 1194.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.352;ClippingRankSum=0;DB;DP=465;ExcessHet=3.0103;FS=98.103;MLEAC=1;MLEAF=0.5;MQ=37.73;MQRankSum=-8.632;QD=2.57;ReadPosRankSum=1.95;SOR=8.789 GT:AD:DP:GQ:PL 0/1:385,80:465:99:1223,0,11295 1 12887549 rs2994114 T C 18741.8 PASS AC=2;AF=1;AN=2;DB;DP=603;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.53;QD=31.18;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,601:601:99:18770,1801,0 1 12888389 rs1830486 A C 5921.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.36;QD=38.45;SOR=1.564 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5950,462,0 1 12907829 rs74866336 T C 3862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.904;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.5;MQ=56.71;MQRankSum=-0.79;QD=12.26;ReadPosRankSum=0.668;SOR=0.71 GT:AD:DP:GQ:PL 0/1:151,164:315:99:3891,0,3387 1 12907885 rs848418 T C 7509.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.87;QD=29.57;SOR=1.21 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7538,761,0 1 12919081 rs45443899 C T 4879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0;DB;DP=444;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=11.07;ReadPosRankSum=-1.505;SOR=0.639 GT:AD:DP:GQ:PL 0/1:234,207:441:99:4908,0,5958 1 12919587 rs17400817 T C 5225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.479;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=56.63;MQRankSum=-5.931;QD=12.1;ReadPosRankSum=0.946;SOR=0.635 GT:AD:DP:GQ:PL 0/1:228,204:432:99:5254,0,5245 1 12919983 rs77138000 G A 2186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=0.219;SOR=0.609 GT:AD:DP:GQ:PL 0/1:135,90:225:99:2215,0,3669 1 12921127 rs12139549 A G 4324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.309;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.71;QD=11.91;ReadPosRankSum=1.206;SOR=0.674 GT:AD:DP:GQ:PL 0/1:179,184:363:99:4353,0,4179 1 12921332 rs17039307 T C 12464.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.118;ClippingRankSum=0;DB;DP=608;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=58.11;MQRankSum=-7.097;QD=20.54;ReadPosRankSum=2.19;SOR=0.781 GT:AD:DP:GQ:PL 0/1:257,350:607:99:12493,0,5836 1 12921333 rs56145411 G A 5914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0;DB;DP=612;ExcessHet=3.0103;FS=4.985;MLEAC=1;MLEAF=0.5;MQ=58.04;MQRankSum=0.06;QD=9.68;ReadPosRankSum=2.376;SOR=0.679 GT:AD:DP:GQ:PL 0/1:347,264:611:99:5943,0,14071 1 12921539 rs142594496 T G 948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=11.365;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=13.467;MLEAC=1;MLEAF=0.5;MQ=44.58;MQRankSum=-11.878;QD=3.16;ReadPosRankSum=-0.91;SOR=1.511 GT:AD:DP:GQ:PL 0/1:249,51:300:99:977,0,6150 1 12921600 rs199504163 C T 1724.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.973;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=64.909;MLEAC=1;MLEAF=0.5;MQ=42.17;MQRankSum=-8.382;QD=4.38;ReadPosRankSum=2.258;SOR=2.088 GT:AD:DP:GQ:PL 0/1:299,95:394:99:1753,0,8065 1 12921642 rs2994093 G A 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.3;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=22.918;MLEAC=1;MLEAF=0.5;MQ=40.56;MQRankSum=-6.805;QD=6.28;ReadPosRankSum=4.305;SOR=0.668 GT:AD:DP:GQ:PL 0/1:230,123:353:99:2246,0,6750 1 12939546 rs200652754 C CG 7210.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0;DB;DP=619;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.5;MQ=52.44;MQRankSum=-8.701;QD=12.06;ReadPosRankSum=1.169;SOR=0.715 GT:AD:DP:GQ:PL 0/1:309,289:600:99:7248,0,7739 1 12939568 rs147865267 C G 6887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.21;ClippingRankSum=0;DB;DP=629;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.5;MQ=53.4;MQRankSum=-9.836;QD=10.95;ReadPosRankSum=2.701;SOR=0.849 GT:AD:DP:GQ:PL 0/1:338,291:629:99:6916,0,8236 1 12939655 rs74842149 T G 7375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.801;ClippingRankSum=0;DB;DP=678;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.07;MQRankSum=-11.267;QD=10.91;ReadPosRankSum=-1.356;SOR=0.707 GT:AD:DP:GQ:PL 0/1:350,326:678:99:7404,0,8211 1 12939904 rs148317829 A C 146.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.472;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=15.888;MLEAC=1;MLEAF=0.5;MQ=41.83;MQRankSum=-7.736;QD=0.48;ReadPosRankSum=-1.489;SOR=1.437 GT:AD:DP:GQ:PL 0/1:278,27:305:99:175,0,6417 1 12941742 rs4514247 G A 4146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.5;MQ=49.67;MQRankSum=-3.215;QD=10.91;ReadPosRankSum=-1.523;SOR=0.558 GT:AD:DP:GQ:PL 0/1:201,179:380:99:4175,0,5123 1 12943038 rs3121081 A C 6105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.135;ClippingRankSum=0;DB;DP=570;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=50.97;MQRankSum=-8.783;QD=10.73;ReadPosRankSum=-1.831;SOR=0.611 GT:AD:DP:GQ:PL 0/1:334,235:569:99:6134,0,8624 1 12952796 rs199584852 T G 70.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.027;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=11.076;MLEAC=1;MLEAF=0.5;MQ=49.46;MQRankSum=-4.662;QD=1.12;ReadPosRankSum=-1.841;SOR=2.633 GT:AD:DP:GQ:PL 0/1:53,10:63:99:99,0,1257 1 12980150 rs141480481 A G 3138.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.852;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.43;MQRankSum=-3.316;QD=9.23;ReadPosRankSum=-1.133;SOR=0.715 GT:AD:DP:GQ:PL 0/1:185,155:340:99:3167,0,3963 1 13001252 rs201910180 T C 1270.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=6.097;MLEAC=1;MLEAF=0.5;MQ=40.9;MQRankSum=-12.833;QD=4;ReadPosRankSum=1.393;SOR=1.061 GT:AD:DP:GQ:PL 0/1:234,84:318:99:1299,0,5852 1 13001414 rs199777518 G A 620.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.445;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.59;MQRankSum=2.269;QD=6.03;ReadPosRankSum=-4.26;SOR=0.704 GT:AD:DP:GQ:PL 0/1:71,32:103:99:649,0,2739 1 13036247 rs201369259 T A 51.77 SNP_QD_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.348;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=46.336;MLEAC=1;MLEAF=0.5;MQ=35.1;MQRankSum=-5.437;QD=0.28;ReadPosRankSum=1.013;SOR=5.643 GT:AD:DP:GQ:PL 0/1:164,22:186:80:80,0,3673 1 13036330 rs200053605 G A 344.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.125;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=74.414;MLEAC=1;MLEAF=0.5;MQ=31.69;MQRankSum=-4.696;QD=2.45;ReadPosRankSum=-2.146;SOR=6.665 GT:AD:DP:GQ:PL 0/1:114,27:141:99:373,0,2437 1 13036447 rs199683676 C G 1705.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.484;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=14.919;MLEAC=1;MLEAF=0.5;MQ=24.79;MQRankSum=-2.689;QD=15.79;ReadPosRankSum=-0.434;SOR=1.997 GT:AD:DP:GQ:PL 0/1:38,70:108:99:1734,0,806 1 13036587 rs77788641 C T 5236.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.304;ClippingRankSum=0;DB;DP=394;ExcessHet=3.0103;FS=7.567;MLEAC=1;MLEAF=0.5;MQ=38.06;MQRankSum=-2.942;QD=13.29;ReadPosRankSum=-0.174;SOR=1.019 GT:AD:DP:GQ:PL 0/1:147,247:394:99:5265,0,2652 1 13036736 rs202011965 T A 194.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.484;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=12.903;MLEAC=1;MLEAF=0.5;MQ=30.72;MQRankSum=-2.907;QD=3.48;ReadPosRankSum=-2.34;SOR=3.293 GT:AD:DP:GQ:PL 0/1:43,13:56:99:223,0,1025 1 13038327 rs199598633 G T 178.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.598;ClippingRankSum=-0;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.02;MQRankSum=-0.94;QD=12.77;ReadPosRankSum=0.393;SOR=0.693 GT:AD:DP:GQ:PL 0/1:7,7:14:99:207,0,207 1 13183422 rs28564063 T C 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.444;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.5;MQ=49.28;MQRankSum=-2.514;QD=14.85;ReadPosRankSum=1.662;SOR=0.592 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,77:164:99:0|1:13183422_T_C:2464,0,2328 1 13183439 rs28713604 T C 7618.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.22;QD=37.53;SOR=1.295 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,203:203:99:1|1:13183422_T_C:7647,612,0 1 13365987 rs199741513 A G 479.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=28.6;MQRankSum=-2.297;QD=16.54;ReadPosRankSum=1.069;SOR=1.46 GT:AD:DP:GQ:PL 0/1:10,19:29:99:508,0,248 1 13366053 rs200188871 G A 53.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0;DB;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.5;MQ=23.83;MQRankSum=-2.148;QD=5.97;ReadPosRankSum=0.241;SOR=3.241 GT:AD:DP:GQ:PL 0/1:5,4:9:82:82,0,121 1 13368549 rs201258581 C T 119.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.21;MQRankSum=-0.842;QD=11.98;ReadPosRankSum=-1.383;SOR=1.085 GT:AD:DP:GQ:PL 0/1:4,6:10:90:148,0,90 1 13368628 rs199603036 G T 197.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.481;ClippingRankSum=-0;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.15;MQRankSum=-0.921;QD=14.13;ReadPosRankSum=0.19;SOR=1.329 GT:AD:DP:GQ:PL 0/1:5,9:14:99:226,0,109 1 13448180 rs199555791 A G 1794.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.491;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=18.707;MLEAC=1;MLEAF=0.5;MQ=34.82;MQRankSum=2.193;QD=39.02;ReadPosRankSum=-3.591;SOR=5.084 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,38:46:99:0|1:13448180_A_G:1823,0,203 1 13448184 . C T 1928.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.541;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=20.533;MLEAC=1;MLEAF=0.5;MQ=36.1;MQRankSum=2.443;QD=36.39;ReadPosRankSum=-3.773;SOR=5.421 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,45:53:99:0|1:13448180_A_G:1957,0,191 1 13448185 . G C 1928.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.558;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=21.244;MLEAC=1;MLEAF=0.5;MQ=36.4;MQRankSum=2.465;QD=34.44;ReadPosRankSum=-3.837;SOR=5.549 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,48:56:99:0|1:13448180_A_G:1957,0,191 1 13448199 rs143762964 C T 2524.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=4.178;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=15.008;MLEAC=2;MLEAF=1;MQ=38.59;MQRankSum=2.785;QD=28.37;ReadPosRankSum=-4.243;SOR=3.978 GT:AD:DP:GQ:PL 1/1:8,81:89:70:2553,70,0 1 13448283 rs80327699 A G 16218.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=600;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.73;QD=27.03;SOR=1.558 GT:AD:DP:GQ:PL 1/1:0,600:600:99:16247,1798,0 1 13448303 rs75752352 A C 10790.8 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.255;ClippingRankSum=0;DB;DP=644;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.98;MQRankSum=0.599;QD=16.76;ReadPosRankSum=0.683;SOR=0.699 GT:AD:DP:GQ:PL 0/1:157,487:644:99:10819,0,2154 1 13448351 rs71183793 T C 1971.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.429;ClippingRankSum=0;DB;DP=620;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=37.67;MQRankSum=-1.104;QD=3.18;ReadPosRankSum=1.846;SOR=0.779 GT:AD:DP:GQ:PL 0/1:476,144:620:99:2000,0,10783 1 13448547 rs200801174 T C 1771.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.9;QD=44.29;SOR=7.428 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,40:40:99:1|1:13448547_T_C:1800,120,0 1 13448548 rs201453721 G A 1771.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.9;QD=44.29;SOR=7.428 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,40:40:99:1|1:13448547_T_C:1800,120,0 1 13448551 rs199771678 T C 1771.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.9;QD=46.63;SOR=7.328 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,38:38:99:1|1:13448547_T_C:1800,120,0 1 13497584 rs201031594 C T 84.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.083;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=16.322;MLEAC=1;MLEAF=0.5;MQ=39.94;MQRankSum=-3.438;QD=1.44;ReadPosRankSum=-1.043;SOR=0.035 GT:AD:DP:GQ:PL 0/1:48,11:59:99:113,0,1416 1 13695685 rs201167498 G A 1525.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.49;QD=30.52;SOR=7.864 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1554,150,0 1 13695787 rs202245256 C G 6504.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.84;QD=29.84;SOR=1.372 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6533,654,0 1 13695816 rs148990958 G A 9904.77 PASS AC=2;AF=1;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.62;QD=27.51;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,360:360:99:9933,1077,0 1 13695974 rs142734546 T C 3680.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.411;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=3.359;MLEAC=2;MLEAF=1;MQ=41.45;MQRankSum=1.513;QD=31.46;ReadPosRankSum=-0.045;SOR=2.163 GT:AD:DP:GQ:PL 1/1:2,115:117:99:3709,301,0 1 13696022 rs201136502 A G 849.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.52;QD=42.49;SOR=6.091 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,20:20:60:1|1:13696022_A_G:878,60,0 1 13696029 rs200753201 A G 781.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.18;QD=43.43;SOR=5.892 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,18:18:54:1|1:13696022_A_G:810,54,0 1 13696047 rs199733857 A T 728.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.17;QD=38.36;SOR=5.994 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,19:19:57:1|1:13696047_A_T:757,57,0 1 13696054 rs200378484 G A 699.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.21;QD=46.65;SOR=5.549 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,15:15:54:1|1:13696047_A_T:728,54,0 1 13696090 rs201393220 T C 411.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.63;QD=27.45;SOR=5.549 GT:AD:DP:GQ:PL 1/1:0,15:15:45:440,45,0 1 13802325 rs3013105 T C 1815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-1.617;SOR=0.881 GT:AD:DP:GQ:PL 0/1:104,79:183:99:1844,0,2560 1 13802437 rs3013106 G A 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.167;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=0.801;SOR=0.557 GT:AD:DP:GQ:PL 0/1:121,96:217:99:2084,0,2783 1 13910417 rs355025 C T 2247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-1.368;SOR=0.793 GT:AD:DP:GQ:PL 0/1:124,103:227:99:2276,0,3023 1 13940864 rs2486188 C G 1963.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1992,195,0 1 14059395 rs33969518 T C 293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.53;ReadPosRankSum=-0.213;SOR=0.741 GT:AD:DP:GQ:PL 0/1:23,16:39:99:322,0,582 1 14105139 rs2076324 T A 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.559;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=10.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=3.619;SOR=1.301 GT:AD:DP:GQ:PL 0/1:117,80:197:99:1893,0,2890 1 14105298 rs1203678 G A 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.645;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.546;SOR=0.912 GT:AD:DP:GQ:PL 0/1:104,86:190:99:2056,0,2894 1 14106394 rs2308040 A ACTC 2811.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.149;QD=16.35;ReadPosRankSum=-0.419;SOR=0.631 GT:AD:DP:GQ:PL 0/1:97,75:172:99:2849,0,4422 1 14109114 rs1203651 A G 3130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=7.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-0.813;SOR=0.393 GT:AD:DP:GQ:PL 0/1:130,122:252:99:3159,0,3204 1 14143003 rs1046331 A G 5544.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5573,546,0 1 14220186 rs1358577 A G 2779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.337;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.682;SOR=0.708 GT:AD:DP:GQ:PL 0/1:123,115:238:99:2808,0,2764 1 15438990 rs10803354 G A 3329.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3358,345,0 1 15441029 rs34135602 T C 1320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=1.719;SOR=0.881 GT:AD:DP:GQ:PL 0/1:74,63:137:99:1349,0,1816 1 15546077 rs3753313 G A 5789.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5818,547,0 1 15616139 rs486557 G A 8845.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,307:307:99:8874,918,0 1 15651062 rs3765356 A G 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.779;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=-2.066;SOR=0.968 GT:AD:DP:GQ:PL 0/1:54,39:93:99:838,0,1203 1 15653563 rs3765357 C T 518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.21;ReadPosRankSum=1.698;SOR=0.654 GT:AD:DP:GQ:PL 0/1:45,27:72:99:547,0,1120 1 15668276 rs763821 G A 1647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=-0.596;SOR=0.61 GT:AD:DP:GQ:PL 0/1:48,66:114:99:1676,0,1229 1 15687059 rs4661330 A G 4091.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4120,405,0 1 15812432 rs6429745 A G 6137.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6166,620,0 1 15873386 rs7515244 A G 495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=0.139;SOR=0.592 GT:AD:DP:GQ:PL 0/1:27,27:54:99:524,0,546 1 16096893 rs12146078 C T 3426.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=1.885 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3455,327,0 1 16096934 rs10927851 C T 4600.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.261 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4629,467,0 1 16242620 rs12063905 C A 1555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.35;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=-0.891;SOR=0.613 GT:AD:DP:GQ:PL 0/1:51,64:115:99:1584,0,1267 1 16248728 . CT C 155.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.92;ReadPosRankSum=1.345;SOR=0.588 GT:AD:DP:GQ:PL 0/1:63,18:85:99:193,0,1524 1 16255644 rs848208 C T 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.945;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=4.219;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.9;ReadPosRankSum=-0.589;SOR=0.496 GT:AD:DP:GQ:PL 0/1:106,83:189:99:1711,0,2919 1 16256007 rs848209 T C 6389.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6418,633,0 1 16257316 . T A 2050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.895;ClippingRankSum=0;DP=165;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-1.399;SOR=0.548 GT:AD:DP:GQ:PL 0/1:86,79:165:99:2079,0,2145 1 16259813 rs848210 A G 6427.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6456,639,0 1 16260916 rs848211 C T 3407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=3.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.083;SOR=0.761 GT:AD:DP:GQ:PL 0/1:129,143:272:99:3436,0,3159 1 16262404 rs61749277 C T 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=1.028;SOR=0.753 GT:AD:DP:GQ:PL 0/1:82,72:154:99:1825,0,2307 1 16271180 rs848216 T C 5238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.773;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=0.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.429;SOR=0.666 GT:AD:DP:GQ:PL 0/1:189,209:398:99:5267,0,4441 1 16272250 rs848217 A G 8481.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8510,888,0 1 16274769 rs698891 C T 1515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.066;SOR=1.085 GT:AD:DP:GQ:PL 0/1:68,60:128:99:1544,0,1662 1 16371067 rs2015352 G T 1977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.12;SOR=0.999 GT:AD:DP:GQ:PL 0/1:81,87:168:99:2006,0,1957 1 16373124 rs5257 A G 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=1.142;SOR=0.815 GT:AD:DP:GQ:PL 0/1:135,109:244:99:2499,0,3318 1 16374533 rs2014562 G C 6500.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6529,594,0 1 16374994 rs1889788 C T 2097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=52.12;MQRankSum=1.371;QD=11.1;ReadPosRankSum=-0.377;SOR=0.746 GT:AD:DP:GQ:PL 0/1:107,82:189:99:2126,0,4041 1 16375063 rs1889789 C G 9739.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.37;QD=44.68;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,218:218:99:1|1:16375063_C_G:9768,656,0 1 16375064 rs1889790 A C 9739.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.5;QD=45.09;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,216:216:99:1|1:16375063_C_G:9768,656,0 1 16376191 rs7367494 C T 2252.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.57;QD=32.65;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2281,206,0 1 16376319 rs7368151 T C 3164.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.02;QD=31.65;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3193,300,0 1 16377108 rs35480349 G C 2358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.735;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-0.122;SOR=0.605 GT:AD:DP:GQ:PL 0/1:134,97:231:99:2387,0,3383 1 16377999 rs6650118 C T 4245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.687;QD=19.84;ReadPosRankSum=2.46;SOR=0.8 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,110:214:99:0|1:16377999_C_T:4274,0,4026 1 16378000 rs6650119 A G 4245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.14;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.687;QD=19.84;ReadPosRankSum=1.89;SOR=0.8 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,110:214:99:0|1:16377999_C_T:4274,0,4026 1 16378215 rs5252 C T 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.1;SOR=0.738 GT:AD:DP:GQ:PL 0/1:56,53:109:99:1253,0,1375 1 16378331 rs41269169 G C 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=58.35;MQRankSum=-1.262;QD=21.31;ReadPosRankSum=0.325;SOR=0.536 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,41:74:99:0|1:16378331_G_C:1605,0,1538 1 16378725 rs12140311 A T 3370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.808;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0.989;QD=12.08;ReadPosRankSum=0.046;SOR=0.815 GT:AD:DP:GQ:PL 0/1:142,137:279:99:3399,0,3472 1 16380196 rs5253 T C 8569.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.51;QD=30.28;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8598,849,0 1 16380243 rs2275166 A G 3991.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.345;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=6.439;MLEAC=1;MLEAF=0.5;MQ=56.53;MQRankSum=-12.204;QD=13.67;ReadPosRankSum=0.627;SOR=1.046 GT:AD:DP:GQ:PGT:PID:PL 0/1:181,111:292:99:0|1:16380243_A_G:4020,0,7102 1 16380252 rs2275167 C T 3932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=5.604;MLEAC=1;MLEAF=0.5;MQ=56.21;MQRankSum=-12.061;QD=13.29;ReadPosRankSum=1.42;SOR=1.016 GT:AD:DP:GQ:PGT:PID:PL 0/1:188,108:296:99:0|1:16380243_A_G:3961,0,7242 1 16383348 rs61769892 C T 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.102;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=15.759;MLEAC=1;MLEAF=0.5;MQ=54.1;MQRankSum=-6.512;QD=5.72;ReadPosRankSum=-2.341;SOR=0.784 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,22:94:99:0|1:16383329_T_TC:566,0,2789 1 16385131 rs1832151 C A 2542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.796;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=4.306;MLEAC=1;MLEAF=0.5;MQ=48.94;MQRankSum=1.222;QD=10.34;ReadPosRankSum=-2.263;SOR=0.481 GT:AD:DP:GQ:PL 0/1:130,116:246:99:2571,0,2887 1 16385175 rs17853748 G A 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.186;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=11.224;MLEAC=1;MLEAF=0.5;MQ=49.81;MQRankSum=-4.642;QD=4.06;ReadPosRankSum=0.927;SOR=1.541 GT:AD:DP:GQ:PL 0/1:149,43:192:99:807,0,3955 1 16385980 rs3884058 G A 789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=0.073;QD=9.18;ReadPosRankSum=1.122;SOR=0.717 GT:AD:DP:GQ:PL 0/1:47,39:86:99:818,0,1070 1 16386008 rs2863452 T C 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.238;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.93;MQRankSum=1.077;QD=9.35;ReadPosRankSum=0.143;SOR=0.702 GT:AD:DP:GQ:PL 0/1:51,41:92:99:888,0,1202 1 16386416 rs9442230 G A 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-0.793;QD=12.63;ReadPosRankSum=0.548;SOR=0.675 GT:AD:DP:GQ:PL 0/1:70,84:154:99:1973,0,1721 1 16386447 rs11576236 G C 3903.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.58;QD=29.35;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3932,399,0 1 16388580 rs3978467 C T 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=54.68;MQRankSum=-10.283;QD=12.12;ReadPosRankSum=-1.078;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,51:136:99:0|1:16388534_C_T:1677,0,3449 1 16388646 rs2863456 T C 4769.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.18;QD=32.45;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4798,441,0 1 16389026 rs2863458 T C 731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.174;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.5;MQ=58.31;MQRankSum=0.968;QD=10.76;ReadPosRankSum=2.243;SOR=0.452 GT:AD:DP:GQ:PL 0/1:39,29:68:99:760,0,1012 1 16451767 rs3754334 G A 2090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=0.21;SOR=0.851 GT:AD:DP:GQ:PL 0/1:76,86:162:99:2119,0,1886 1 16464673 rs2230597 G A 8648.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,270:270:99:8677,810,0 1 16475123 rs6678616 C T 6119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.358;ClippingRankSum=0;DB;DP=381;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.15;ReadPosRankSum=0.113;SOR=0.62 GT:AD:DP:GQ:PGT:PID:PL 0/1:217,162:379:99:0|1:16475123_C_T:6148,0,11101 1 16475126 rs6678618 C T 6074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=382;ExcessHet=3.0103;FS=2.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.99;ReadPosRankSum=-0.592;SOR=0.59 GT:AD:DP:GQ:PGT:PID:PL 0/1:218,162:380:99:0|1:16475123_C_T:6103,0,11148 1 16532803 rs221050 G A 2272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.23;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-0.656;SOR=0.935 GT:AD:DP:GQ:PL 0/1:99,100:199:99:2301,0,2717 1 16532848 rs221051 A G 2060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.113;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=-0.311;SOR=0.816 GT:AD:DP:GQ:PL 0/1:57,76:133:99:2089,0,1543 1 16534002 rs221056 C G 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-1.599;SOR=0.512 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1953,0,1755 1 16534255 rs221057 C G 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.17;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.839;SOR=0.96 GT:AD:DP:GQ:PL 0/1:70,63:133:99:1817,0,1921 1 16534646 rs221058 C G 3072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.58;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=1.301;SOR=0.641 GT:AD:DP:GQ:PL 0/1:101,119:220:99:3101,0,2645 1 16534730 rs221059 G A 1955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.436;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-0.542;SOR=0.815 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1984,0,1759 1 16577794 rs35196193 C T 2392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.854;SOR=0.89 GT:AD:DP:GQ:PL 0/1:105,95:200:99:2421,0,2852 1 16577908 rs12069239 G C 2231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.665;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.324;SOR=0.965 GT:AD:DP:GQ:PL 0/1:101,90:191:99:2260,0,2536 1 16731510 rs525409 C G 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=5.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=1.478;SOR=0.907 GT:AD:DP:GQ:PL 0/1:127,98:225:99:2195,0,3224 1 16736272 rs41269195 G A 4215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=4.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.953;SOR=0.505 GT:AD:DP:GQ:PL 0/1:170,182:352:99:4244,0,4075 1 16736546 rs10907226 C T 1448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-2.054;SOR=0.928 GT:AD:DP:GQ:PL 0/1:67,65:132:99:1477,0,1586 1 17248500 rs6683035 A G 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.469;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=-1.364;SOR=0.493 GT:AD:DP:GQ:PL 0/1:65,94:159:99:2439,0,1466 1 17248532 rs6586566 A G 6217.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6246,635,0 1 17250836 rs57174186 A G 2275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.07;ReadPosRankSum=0.497;SOR=0.615 GT:AD:DP:GQ:PL 0/1:170,112:282:99:2304,0,4189 1 17264920 rs4463721 C T 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.65;ReadPosRankSum=0.536;SOR=0.638 GT:AD:DP:GQ:PL 0/1:119,63:182:99:1238,0,3019 1 17264939 rs4558023 T C 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.505;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.9;ReadPosRankSum=1.204;SOR=0.664 GT:AD:DP:GQ:PL 0/1:132,70:202:99:1422,0,3167 1 17265560 rs9435793 C T 1758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.147;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=0.055;QD=5.01;ReadPosRankSum=2.21;SOR=0.838 GT:AD:DP:GQ:PL 0/1:260,91:351:99:1787,0,6681 1 17266536 rs9435714 G C 3504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-0.547;QD=8.65;ReadPosRankSum=1.227;SOR=0.55 GT:AD:DP:GQ:PL 0/1:255,150:405:99:3533,0,7058 1 17270751 rs12025984 G A 6220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-2.453;QD=16.59;ReadPosRankSum=0.632;SOR=0.68 GT:AD:DP:GQ:PL 0/1:125,250:375:99:6249,0,2683 1 17273396 rs7537468 A G 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.162;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.76;ReadPosRankSum=1.411;SOR=0.582 GT:AD:DP:GQ:PL 0/1:256,89:345:99:1672,0,6105 1 17273444 rs7545185 G A 1469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.95;ReadPosRankSum=-1.386;SOR=0.522 GT:AD:DP:GQ:PL 0/1:173,74:247:99:1498,0,4742 1 17273493 rs7537563 A C 1108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.085;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.34;ReadPosRankSum=-1.58;SOR=0.582 GT:AD:DP:GQ:PL 0/1:103,48:151:99:1137,0,2721 1 17280735 rs140178093 G A 2184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.312;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.5;MQ=47.23;MQRankSum=2.164;QD=10.07;ReadPosRankSum=-1.39;SOR=0.896 GT:AD:DP:GQ:PL 0/1:118,99:217:99:2213,0,2707 1 17295679 rs4920574 T C 6753.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6782,698,0 1 17301448 rs2235933 C T 728.77 PASS AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.1;QD=36.44;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,20:20:60:757,60,0 1 17313454 rs7531163 G A 4930.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.24;SOR=1.318 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4959,430,0 1 17314702 rs3738815 C T 4963.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4992,486,0 1 17355218 rs11541235 A G 1414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.49;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-3.96;SOR=0.591 GT:AD:DP:GQ:PL 0/1:66,62:128:99:1443,0,1628 1 17380497 rs2746462 G T 2070.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2099,222,0 1 17413121 rs2076615 A C 1504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.259;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.565;SOR=0.597 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1533,0,1287 1 17418883 rs2647184 A G 5118.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.92;SOR=1.089 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,135:135:99:1|1:17418883_A_G:5147,405,0 1 17418894 rs2273111 A G 1886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.308;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=0.829;SOR=0.95 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,77:134:99:0|1:17418883_A_G:1915,0,1330 1 17419024 rs11203297 G A 1060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=-2.467;SOR=0.655 GT:AD:DP:GQ:PL 0/1:70,48:118:99:1089,0,2003 1 17550121 rs2293912 G A 785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.728;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=1.002;SOR=0.951 GT:AD:DP:GQ:PL 0/1:47,35:82:99:814,0,1115 1 17555508 rs2977234 G T 2379.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2408,228,0 1 17557133 rs3003406 A C 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.332;SOR=0.628 GT:AD:DP:GQ:PL 0/1:57,57:114:99:1264,0,1219 1 17563967 rs2977306 T C 1402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.017;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.31;ReadPosRankSum=-0.158;SOR=1.069 GT:AD:DP:GQ:PL 0/1:50,48:98:99:1431,0,1291 1 17609448 rs2293920 G T 2140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.225;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.346;SOR=0.82 GT:AD:DP:GQ:PL 0/1:94,85:179:99:2169,0,2321 1 17698725 rs1204873 C T 750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=-0.081;SOR=0.436 GT:AD:DP:GQ:PL 0/1:51,37:88:99:779,0,1389 1 17699539 rs1204868 C T 1644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=9.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=0.227;SOR=0.263 GT:AD:DP:GQ:PL 0/1:62,65:127:99:1673,0,1697 1 17714864 rs6696295 T C 1291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.424;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=0.008;SOR=0.776 GT:AD:DP:GQ:PL 0/1:51,51:102:99:1320,0,1285 1 17718671 rs10709483 AG A 5105.73 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=35.21;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,145:145:99:5143,436,0 1 17720545 rs12073549 C T 1730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.035;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.088;QD=11.31;ReadPosRankSum=0.419;SOR=0.553 GT:AD:DP:GQ:PL 0/1:82,71:153:99:1759,0,1999 1 17725154 . CCCCCCCCA C 503.73 PASS AC=2;AF=1;AN=2;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.98;SOR=5.136 GT:AD:DP:GQ:PL 1/1:0,12:12:36:541,36,0 1 17725358 rs2244936 C G 5281.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5310,534,0 1 17991052 rs6695710 T C 6601.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6630,657,0 1 18023365 rs2270978 C T 6246.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.322 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6275,622,0 1 18023509 rs2270977 T C 9597.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9626,892,0 1 18023690 rs2270976 A G 11662.8 PASS AC=2;AF=1;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,397:397:99:11691,1189,0 1 18149510 rs694214 G T 3572.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.57 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3601,357,0 1 18149566 rs2296035 C A 5310.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.001 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5339,527,0 1 18807897 rs2992755 C G 2899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.248;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.936;SOR=0.7 GT:AD:DP:GQ:PL 0/1:99,111:210:99:2928,0,2393 1 18807953 rs11261022 C A 2669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.957;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=0.49;SOR=0.836 GT:AD:DP:GQ:PL 0/1:99,102:201:99:2698,0,2578 1 18808292 rs2992753 C A 2946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=0.225;SOR=0.853 GT:AD:DP:GQ:PL 0/1:111,116:227:99:2975,0,3020 1 18808465 rs3007718 T A 2803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.733;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.248;SOR=0.696 GT:AD:DP:GQ:PL 0/1:112,110:222:99:2832,0,2764 1 18808526 rs2992752 A C 2821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.201;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.585;SOR=0.916 GT:AD:DP:GQ:PL 0/1:110,107:217:99:2850,0,2758 1 19166294 rs12033832 G A 3860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.718;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=0.815;SOR=0.661 GT:AD:DP:GQ:PL 0/1:134,151:285:99:3889,0,3320 1 19186129 rs9701796 G C 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.281;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=-0.331;SOR=0.72 GT:AD:DP:GQ:PL 0/1:100,109:209:99:2902,0,2540 1 19201928 rs2230709 C T 1638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=3.062;SOR=1.027 GT:AD:DP:GQ:PL 0/1:65,67:132:99:1667,0,1669 1 19201956 rs2230708 A G 1849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.496;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=10.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-1.62;SOR=0.609 GT:AD:DP:GQ:PL 0/1:70,72:142:99:1878,0,1815 1 19202917 rs7550938 T C 4273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.67;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=4.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.31;ReadPosRankSum=0.187;SOR=0.479 GT:AD:DP:GQ:PGT:PID:PL 0/1:145,117:262:99:0|1:19202917_T_C:4302,0,7736 1 19202926 rs2230706 T C 4191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.066;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=4.327;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.18;ReadPosRankSum=-1.282;SOR=0.482 GT:AD:DP:GQ:PGT:PID:PL 0/1:131,113:244:99:0|1:19202917_T_C:4220,0,7426 1 19203997 rs2230705 C G 9462.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9491,921,0 1 19212007 rs139640415 G A 2250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.366;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=-0.126;SOR=0.683 GT:AD:DP:GQ:PL 0/1:68,84:152:99:2279,0,1719 1 19411129 rs1043905 A G 6470.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.126 GT:AD:DP:GQ:PL 1/1:0,211:213:99:6499,633,0 1 19413261 rs12584 T A 7543.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7572,776,0 1 19415304 rs1043899 C T 6720.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.939 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6749,701,0 1 19433449 rs6426677 A G 7100.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7129,746,0 1 19447843 rs1044010 C G 7909.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7938,779,0 1 19491857 rs3748757 T C 1653.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1682,171,0 1 19499560 rs16862578 T C 6299.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.98;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6328,590,0 1 19510394 rs3762396 A G 5001.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.06;ReadPosRankSum=-0.611;SOR=0.273 GT:AD:DP:GQ:PL 1/1:1,155:156:99:5030,429,0 1 19566881 rs12084825 C T 4352.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4381,450,0 1 19582563 rs1557133 G A 3119.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.61;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3148,334,0 1 19584004 rs1042380 G A 4762.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.91;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4791,528,0 1 19609254 rs1738025 T C 11548.8 PASS AC=2;AF=1;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.81;QD=30.23;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,382:382:99:11577,1144,0 1 19611241 rs1738023 T C 5557.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5586,555,0 1 19635011 rs1043657 C T 6391.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6420,651,0 1 19638309 rs2227295 A G 7645.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.26 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7674,732,0 1 19950062 rs1737428 T C 568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=0.009;SOR=0.719 GT:AD:DP:GQ:PL 0/1:38,30:68:99:597,0,895 1 19992708 rs56027618 C T 3208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.851;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.659;SOR=0.651 GT:AD:DP:GQ:PL 0/1:139,130:269:99:3237,0,3133 1 20020993 rs4370779 A G 6663.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.6;ReadPosRankSum=-0.662;SOR=0.89 GT:AD:DP:GQ:PL 1/1:2,231:233:99:6692,649,0 1 20020994 rs4515815 C T 10342.8 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.77;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,231:231:99:10371,701,0 1 20097941 rs10917536 G T 2806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=-1.072;SOR=0.646 GT:AD:DP:GQ:PL 0/1:90,111:201:99:2835,0,2184 1 20216860 rs10799593 G A 847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.388;SOR=0.495 GT:AD:DP:GQ:PL 0/1:41,35:76:99:876,0,1101 1 20411332 rs2020887 C T 673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=1.628;SOR=0.768 GT:AD:DP:GQ:PL 0/1:39,34:73:99:702,0,988 1 20442054 rs584367 T C 573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.686;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=-0.607;SOR=1.27 GT:AD:DP:GQ:PL 0/1:42,24:66:99:602,0,1096 1 20490518 rs6426616 T C 2323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.207;SOR=0.684 GT:AD:DP:GQ:PL 0/1:92,96:188:99:2352,0,2235 1 20656824 rs2072752 A G 3725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.358;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.739;SOR=0.645 GT:AD:DP:GQ:PL 0/1:156,146:302:99:3754,0,3754 1 20657352 rs2072753 T C 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=-0.084;SOR=0.437 GT:AD:DP:GQ:PL 0/1:40,60:100:99:1500,0,931 1 20662938 rs10916769 A G 4007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.899;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=0.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=1.959;SOR=0.676 GT:AD:DP:GQ:PL 0/1:133,160:293:99:4036,0,3088 1 20671961 rs11582960 G A 2382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.91;SOR=0.728 GT:AD:DP:GQ:PL 0/1:98,100:198:99:2411,0,2565 1 20672101 rs4655200 C T 3309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.019;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.117;SOR=0.778 GT:AD:DP:GQ:PL 0/1:165,150:315:99:3338,0,3808 1 20680718 rs2072751 G A 2580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=9.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.377;SOR=0.957 GT:AD:DP:GQ:PL 0/1:133,104:237:99:2609,0,3348 1 20680760 rs230180 A G 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.734;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=4.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.944;SOR=0.495 GT:AD:DP:GQ:PL 0/1:84,57:141:99:1483,0,1807 1 20915701 rs2072671 A C 2233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.361;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.608;QD=12.99;ReadPosRankSum=1.221;SOR=0.842 GT:AD:DP:GQ:PL 0/1:87,85:172:99:2262,0,2090 1 20964328 rs2298298 A G 5123.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=1.267 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5152,516,0 1 20972048 rs3131713 G A 4141.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=30.01;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4170,412,0 1 20980880 rs607254 G A 3078.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3107,285,0 1 20982631 rs4704 G A 2900.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2929,303,0 1 20987873 rs537816 G C 3419.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.57;SOR=1.222 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3448,315,0 1 20992819 rs631357 G C 2579.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2608,269,0 1 21024901 rs522496 C T 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.579;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-0.75;SOR=0.793 GT:AD:DP:GQ:PL 0/1:68,61:129:99:1201,0,1634 1 21031042 rs2296225 T C 2594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.047;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=1.372;SOR=0.46 GT:AD:DP:GQ:PL 0/1:91,105:196:99:2623,0,2186 1 21042094 rs12046928 G A 2417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.653;SOR=0.851 GT:AD:DP:GQ:PL 0/1:110,99:209:99:2446,0,2624 1 21044161 rs601329 A G 8859.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8888,872,0 1 21044219 rs601392 A C 7012.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,223:223:99:7041,669,0 1 21050958 rs592060 C T 8374.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8403,823,0 1 21167404 rs2230573 A G 4820.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4849,491,0 1 21180181 rs2305463 C T 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.93;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-1.669;SOR=0.708 GT:AD:DP:GQ:PL 0/1:42,49:91:99:1105,0,860 1 21188703 rs10916885 A T 639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.075;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.12;MQRankSum=2.791;QD=10.66;ReadPosRankSum=2.246;SOR=0.674 GT:AD:DP:GQ:PL 0/1:33,27:61:99:668,0,825 1 21571601 rs12562197 G A 3324.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3353,342,0 1 21573722 rs2229450 G A 6468.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6497,654,0 1 21795288 rs61740199 C T 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=4.13;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.301;SOR=0.468 GT:AD:DP:GQ:PL 0/1:69,65:134:99:1557,0,1777 1 21795388 rs1827293 A G 979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.611;SOR=0.423 GT:AD:DP:GQ:PL 0/1:47,43:90:99:1008,0,1216 1 21797204 rs72872292 G C 1287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.032;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-1.207;SOR=0.712 GT:AD:DP:GQ:PL 0/1:59,56:115:99:1316,0,1382 1 21798144 rs142355608 C T 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=59.51;MQRankSum=-1.744;QD=9.6;ReadPosRankSum=1.718;SOR=0.508 GT:AD:DP:GQ:PL 0/1:96,79:175:99:1709,0,2263 1 21798249 rs72872297 C G 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.441;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=-2.264;SOR=0.983 GT:AD:DP:GQ:PL 0/1:109,56:165:99:1395,0,2901 1 21799414 rs78430674 G A 706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.449;SOR=0.693 GT:AD:DP:GQ:PL 0/1:31,31:62:99:735,0,857 1 21804815 rs7535654 T G 2984.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3013,300,0 1 21806571 rs41265989 A G 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=2.273;QD=22.61;ReadPosRankSum=1.671;SOR=0.665 GT:AD:DP:GQ:PL 0/1:12,60:72:99:1656,0,176 1 21808159 rs71512991 G A 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.434;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=43.24;MQRankSum=-4.596;QD=3.14;ReadPosRankSum=0.598;SOR=0.749 GT:AD:DP:GQ:PL 0/1:158,50:208:99:682,0,3469 1 21808207 rs146564096 A C 567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.105;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.11;MQRankSum=-2.7;QD=4.14;ReadPosRankSum=0.923;SOR=0.679 GT:AD:DP:GQ:PL 0/1:102,35:137:99:596,0,2478 1 21808223 rs145079058 T C 1256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.642;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=8.276;MLEAC=1;MLEAF=0.5;MQ=41.34;MQRankSum=-2.58;QD=12.69;ReadPosRankSum=1.972;SOR=1.65 GT:AD:DP:GQ:PL 0/1:53,46:99:99:1285,0,1305 1 21809667 rs139757131 C G 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.5;MQ=52.2;MQRankSum=-1.138;QD=10.72;ReadPosRankSum=-0.621;SOR=0.503 GT:AD:DP:GQ:PL 0/1:73,69:142:99:1551,0,1597 1 21809750 rs202069483 T C 1321.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.7;QD=41.31;SOR=5.549 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1350,96,0 1 21889635 rs1780316 T C 3361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-0.241;SOR=0.714 GT:AD:DP:GQ:PL 0/1:160,136:296:99:3390,0,3940 1 21889760 rs149344982 G A 3178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.352;SOR=0.686 GT:AD:DP:GQ:PL 0/1:162,138:300:99:3207,0,4175 1 21932625 rs2275365 G A 3806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=12.847;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.345;SOR=0.968 GT:AD:DP:GQ:PL 0/1:146,159:305:99:3835,0,3434 1 21935433 rs861212 G T 1256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=-0.351;SOR=0.653 GT:AD:DP:GQ:PL 0/1:39,55:94:99:1285,0,892 1 21939741 rs1256282 G C 911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.069;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-2.631;SOR=1.059 GT:AD:DP:GQ:PL 0/1:38,38:76:99:940,0,928 1 21943820 rs2275360 G A 3167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=1.459;SOR=0.599 GT:AD:DP:GQ:PL 0/1:161,140:301:99:3196,0,3772 1 22030120 rs370210128 GA G 80.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.42;ReadPosRankSum=-0.555;SOR=0.771 GT:AD:DP:GQ:PL 0/1:45,12:60:99:118,0,1116 1 22033228 rs56167338 G A 1965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.156;SOR=0.598 GT:AD:DP:GQ:PL 0/1:105,83:188:99:1994,0,2722 1 22084145 rs17458515 T C 949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.474;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=1.308;SOR=0.887 GT:AD:DP:GQ:PL 0/1:70,41:111:99:978,0,1668 1 22141206 rs10917051 A C 8241.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8270,804,0 1 22149935 rs897467 T C 6302.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6331,627,0 1 22150120 rs3736360 C T 1370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-1.493;SOR=0.926 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1399,0,1760 1 22150160 rs3736358 G T 1747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=6.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.577;SOR=0.368 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1776,0,1695 1 22154845 rs2228347 A G 3111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.044;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-0.197;SOR=0.761 GT:AD:DP:GQ:PL 0/1:107,130:237:99:3140,0,2386 1 22157689 rs3736355 G A 3863.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3892,394,0 1 22159008 rs2229487 C A 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.996;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.583;SOR=0.803 GT:AD:DP:GQ:PL 0/1:59,58:117:99:1416,0,1369 1 22160111 rs17459139 C T 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.409;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=0.46;SOR=0.723 GT:AD:DP:GQ:PL 0/1:58,81:139:99:1953,0,1573 1 22161275 rs2229492 G A 2751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=2.319;SOR=0.558 GT:AD:DP:GQ:PL 0/1:122,121:243:99:2780,0,3023 1 22165901 rs2291826 A G 1811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.533;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-1.723;SOR=0.671 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1840,0,2093 1 22165987 rs2291827 G A 2247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.709;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.818;SOR=0.674 GT:AD:DP:GQ:PL 0/1:108,109:217:99:2276,0,2618 1 22174600 rs3767138 A G 4679.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=1.486 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4708,447,0 1 22191454 rs897471 G A 5244.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5273,548,0 1 22199245 rs2229482 C T 4752.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4781,488,0 1 22202109 rs2501265 C T 3250.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=1.413 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3279,309,0 1 22206649 rs989994 T C 5915.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5944,582,0 1 22206942 rs1874793 G A 4631.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4660,449,0 1 22207235 rs1874792 T C 8049.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8078,854,0 1 22207804 rs60267433 ACCCAGGGTGGCAG A 5124.73 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=44.56;SOR=1.219 GT:AD:DP:GQ:PL 1/1:0,115:115:99:5162,347,0 1 22211856 rs145101074 G A 1539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.249;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=4.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=-1.872;SOR=0.616 GT:AD:DP:GQ:PL 0/1:112,65:177:99:1568,0,2864 1 22216574 rs2254358 C A 4760.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.03;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.85;ReadPosRankSum=0.955;SOR=0.301 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4789,485,0 1 22216604 rs2254357 C G 4899.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4928,497,0 1 22217108 rs2501260 G A 4380.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4409,444,0 1 22222455 rs1869780 G T 1241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.352;SOR=0.646 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1270,0,1154 1 22307340 rs7528228 C T 394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.963;MLEAC=1;MLEAF=0.5;MQ=56.62;MQRankSum=-10;QD=2.42;ReadPosRankSum=-1.055;SOR=1.095 GT:AD:DP:GQ:PL 0/1:133,30:163:99:423,0,3757 1 22307358 rs7528300 C G 602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.693;MLEAC=1;MLEAF=0.5;MQ=56.87;MQRankSum=-9.224;QD=3.63;ReadPosRankSum=-2.376;SOR=1.108 GT:AD:DP:GQ:PL 0/1:131,35:166:99:631,0,3664 1 22307538 rs7528405 C T 3057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.06;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=4.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=1.673;SOR=0.482 GT:AD:DP:GQ:PL 0/1:132,126:258:99:3086,0,3408 1 22310262 rs10733033 G C 4173.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.664;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=54.85;MQRankSum=-17.319;QD=10.31;ReadPosRankSum=0.181;SOR=0.771 GT:AD:DP:GQ:PL 0/1:217,188:405:99:4202,0,4872 1 22310662 rs6426735 G T 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.024;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=3.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.401;SOR=0.933 GT:AD:DP:GQ:PL 0/1:146,104:250:99:2539,0,3499 1 22310674 rs7538207 C T 2617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.053;SOR=0.978 GT:AD:DP:GQ:PL 0/1:141,110:251:99:2646,0,3595 1 22310725 rs3820287 G C 3069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.03;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0;QD=11.76;ReadPosRankSum=2.783;SOR=0.629 GT:AD:DP:GQ:PL 0/1:133,128:261:99:3098,0,3431 1 22310824 rs1803531 T C 2667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.79;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=4.236;MLEAC=1;MLEAF=0.5;MQ=57.43;MQRankSum=-2.928;QD=10.18;ReadPosRankSum=0.135;SOR=0.961 GT:AD:DP:GQ:PL 0/1:146,116:262:99:2696,0,3411 1 22313161 rs1803530 T C 2880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.753;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=11.614;MLEAC=1;MLEAF=0.5;MQ=57.7;MQRankSum=1.539;QD=8.55;ReadPosRankSum=0.778;SOR=1.203 GT:AD:DP:GQ:PL 0/1:208,129:337:99:2909,0,4945 1 22315738 rs4655006 C T 771.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.364;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.5;MQ=38.64;MQRankSum=-2.284;QD=12.06;ReadPosRankSum=0.971;SOR=0.486 GT:AD:DP:GQ:PL 0/1:26,38:64:99:800,0,619 1 22332008 rs56968853 T C 1275.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.046;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=17.49;MLEAC=1;MLEAF=0.5;MQ=56.88;MQRankSum=-16.692;QD=3.85;ReadPosRankSum=-1.641;SOR=1.033 GT:AD:DP:GQ:PL 0/1:252,79:339:99:1304,0,5602 1 22336277 rs3820285 C G 4599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-0.333;SOR=0.868 GT:AD:DP:GQ:PL 0/1:146,196:342:99:4628,0,3201 1 22832743 rs209732 A T 4155.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4184,438,0 1 22835677 rs209729 A G 5852.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5881,599,0 1 22837849 rs209727 C T 1617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=0.814;SOR=0.706 GT:AD:DP:GQ:PL 0/1:97,71:168:99:1646,0,2499 1 22846709 rs209720 G A 5195.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5224,510,0 1 22852715 rs881646 G C 2649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-2.053;SOR=0.895 GT:AD:DP:GQ:PL 0/1:122,112:234:99:2678,0,2851 1 22965835 . C A 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.042;ClippingRankSum=0;DP=221;ExcessHet=3.0103;FS=2.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=1.226;SOR=0.786 GT:AD:DP:GQ:PL 0/1:113,107:220:99:2552,0,3200 1 23219493 rs309472 T C 10097.8 PASS AC=2;AF=1;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,352:352:99:10126,1054,0 1 23280424 rs12048993 G T 3387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=0.656;SOR=0.749 GT:AD:DP:GQ:PL 0/1:151,149:300:99:3416,0,3668 1 23418153 rs10799790 C T 6983.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7012,718,0 1 23418505 rs149677710 C T 2035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-1.537;SOR=0.803 GT:AD:DP:GQ:PL 0/1:106,87:193:99:2064,0,2752 1 23419261 rs477717 G A 8020.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8049,800,0 1 23419374 rs3765407 G T 11174.8 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,251:251:99:1|1:23419374_G_T:11203,785,0 1 23419383 rs477830 C T 10772.8 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.79;SOR=0.709 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,246:246:99:1|1:23419374_G_T:10801,746,0 1 23419855 rs1983965 T C 4912.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4941,478,0 1 23688933 rs2849028 A G 7308.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.22;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,220:220:99:7337,659,0 1 23758427 rs146962112 T C 1476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.603;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=10.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=1.066;SOR=1.723 GT:AD:DP:GQ:PL 0/1:48,52:100:99:1505,0,1103 1 23836364 rs2075993 A G 3057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.974;SOR=0.724 GT:AD:DP:GQ:PL 0/1:155,139:294:99:3086,0,3758 1 23847464 rs2075995 C A 2705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-0.072;SOR=0.729 GT:AD:DP:GQ:PL 0/1:89,107:196:99:2734,0,2237 1 23885498 rs11574 T C 3548.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3577,330,0 1 23885599 rs2067053 T C 1468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.196;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.461;SOR=0.642 GT:AD:DP:GQ:PL 0/1:77,56:133:99:1497,0,2047 1 24078962 rs114897920 A C 1617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.471;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=0.765;SOR=0.559 GT:AD:DP:GQ:PL 0/1:95,74:169:99:1646,0,2258 1 24083494 rs2076345 C T 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.07;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.965;SOR=0.542 GT:AD:DP:GQ:PL 0/1:108,98:206:99:2100,0,2817 1 24122986 rs760941 C T 622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=0.741;SOR=0.332 GT:AD:DP:GQ:PL 0/1:58,36:94:99:651,0,1253 1 24134721 rs719400 T C 3278.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3307,306,0 1 24180962 rs13551 T C 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.29;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.063;SOR=0.689 GT:AD:DP:GQ:PL 0/1:63,65:128:99:1372,0,1592 1 24201094 rs2229581 G C 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.462;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=5.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-1.077;SOR=1.108 GT:AD:DP:GQ:PL 0/1:103,75:178:99:1711,0,2519 1 24201109 rs2229580 C T 1765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=7.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.276;SOR=1.223 GT:AD:DP:GQ:PL 0/1:102,77:179:99:1794,0,2547 1 24201262 rs2502993 A G 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=-0.263;SOR=0.798 GT:AD:DP:GQ:PL 0/1:104,63:167:99:1654,0,2814 1 24201357 rs4649124 A G 1857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.268;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-2.133;SOR=0.877 GT:AD:DP:GQ:PL 0/1:85,71:156:99:1886,0,2150 1 24201448 rs3003336 C T 2158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.862;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=2.47;SOR=0.809 GT:AD:DP:GQ:PL 0/1:72,90:162:99:2187,0,1911 1 24201643 rs2501431 G A 2308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.209;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.23;SOR=0.732 GT:AD:DP:GQ:PL 0/1:93,97:190:99:2337,0,2578 1 24201919 rs2502992 T C 4889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.533;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.29;ReadPosRankSum=0.039;SOR=0.828 GT:AD:DP:GQ:PGT:PID:PL 0/1:116,125:241:99:0|1:24201919_T_C:4918,0,5664 1 24201920 rs2501432 T C 4889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.006;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=4.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.12;ReadPosRankSum=0.19;SOR=0.859 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,126:243:99:0|1:24201919_T_C:4918,0,5664 1 24294450 rs200961364 C CA 363.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.13;MQRankSum=-4.488;QD=10.39;ReadPosRankSum=0.516;SOR=0.76 GT:AD:DP:GQ:PL 0/1:15,20:46:99:401,0,276 1 24388417 rs11811060 A G 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.745;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.494;SOR=0.807 GT:AD:DP:GQ:PL 0/1:82,59:141:99:1495,0,2163 1 24393563 rs16829071 C T 1582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-1.566;SOR=0.633 GT:AD:DP:GQ:PL 0/1:65,71:136:99:1611,0,1469 1 24394811 rs12145360 A G 1569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.841;SOR=0.596 GT:AD:DP:GQ:PL 0/1:76,68:144:99:1598,0,1916 1 24400633 rs10903083 C G 2132.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2161,210,0 1 24406535 rs35446243 G A 1991.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.152;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.219;SOR=0.839 GT:AD:DP:GQ:PL 0/1:85,78:163:99:2020,0,2127 1 24409165 rs4320728 C T 2501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.147;SOR=0.608 GT:AD:DP:GQ:PL 0/1:103,109:212:99:2530,0,2323 1 24411138 rs41302013 T C 1314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=1.121;SOR=0.665 GT:AD:DP:GQ:PL 0/1:45,55:100:99:1343,0,1196 1 24416059 rs4393101 T C 6785.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6814,678,0 1 24416133 rs4276859 C T 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=0.288;SOR=0.716 GT:AD:DP:GQ:PL 0/1:83,92:175:99:2314,0,2089 1 24417415 rs6700245 T C 2660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.74;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=2.272;SOR=0.782 GT:AD:DP:GQ:PL 0/1:89,107:196:99:2689,0,2024 1 24421950 rs4319261 C G 1349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.398;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.51;ReadPosRankSum=1.113;SOR=0.662 GT:AD:DP:GQ:PL 0/1:40,53:93:99:1378,0,886 1 24447468 rs3795299 G C 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.197;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.873;SOR=0.66 GT:AD:DP:GQ:PL 0/1:115,115:230:99:2819,0,2687 1 24447867 rs140471465 C T 2793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.26;SOR=0.6 GT:AD:DP:GQ:PL 0/1:119,113:232:99:2822,0,3162 1 24447943 rs34967816 G A 2583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.519;SOR=0.693 GT:AD:DP:GQ:PL 0/1:126,107:233:99:2612,0,3287 1 24454688 rs16829204 C T 2190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=4.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.243;SOR=0.609 GT:AD:DP:GQ:PL 0/1:103,94:197:99:2219,0,2384 1 24460797 rs17852649 T G 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.572;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=5.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=-1.359;SOR=0.891 GT:AD:DP:GQ:PL 0/1:87,55:142:99:1277,0,1983 1 24465113 rs10903022 C T 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.028;SOR=0.695 GT:AD:DP:GQ:PL 0/1:92,96:188:99:2088,0,2260 1 24484108 rs72648587 G A 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.017;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-1.098;SOR=0.826 GT:AD:DP:GQ:PL 0/1:110,91:201:99:2204,0,2809 1 24718075 rs2294520 T C 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-1.653;SOR=0.829 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,39:75:99:0|1:24718075_T_C:861,0,1384 1 24718079 rs560219 C A 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.296;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=1.316;SOR=0.628 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,36:76:99:1|0:24718075_T_C:799,0,1530 1 24775967 rs4648989 G A 4988.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5017,516,0 1 24859617 rs196429 G A 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-0.624;SOR=0.681 GT:AD:DP:GQ:PL 0/1:114,98:212:99:2100,0,2659 1 24859665 rs196430 G A 2010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=0.905;SOR=0.59 GT:AD:DP:GQ:PL 0/1:122,95:217:99:2039,0,2858 1 24861704 rs196432 G A 2703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-1.717;SOR=0.638 GT:AD:DP:GQ:PL 0/1:140,122:262:99:2732,0,3400 1 25291010 rs6672420 A T 870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=0.995;SOR=0.835 GT:AD:DP:GQ:PL 0/1:69,45:114:99:899,0,1659 1 25570081 rs1043879 T C 3789.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3818,366,0 1 25780889 rs141203814 A ATG 1245.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.558;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.5;MQ=62.42;MQRankSum=1.351;QD=25.95;ReadPosRankSum=-0.655;SOR=1.402 GT:AD:DP:GQ:PL 0/1:6,42:48:72:1283,0,72 1 25780893 rs61775167 A G 2266.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.42;QD=39.77;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2295,171,0 1 25889632 rs6687605 T C 3809.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.808;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.23;ReadPosRankSum=1.167;SOR=0.945 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3838,391,0 1 25890189 rs28969504 A G 4297.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4326,441,0 1 26110143 rs3767877 G A 1203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=1.473;SOR=1.013 GT:AD:DP:GQ:PL 0/1:60,49:109:99:1232,0,1539 1 26131654 rs7349185 G A 1791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.645;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.07;ReadPosRankSum=0.393;SOR=0.806 GT:AD:DP:GQ:PL 0/1:137,85:222:99:1820,0,3215 1 26299050 rs35020920 G A 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=0.787;SOR=0.775 GT:AD:DP:GQ:PL 0/1:56,72:128:99:1637,0,1311 1 26357656 rs2736831 C A 3625.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3654,373,0 1 26392824 rs35123100 C A 1755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-2.422;SOR=0.748 GT:AD:DP:GQ:PL 0/1:93,79:172:99:1784,0,2333 1 26448447 rs17257107 A G 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.278;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=9.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.49;SOR=1.116 GT:AD:DP:GQ:PL 0/1:89,73:162:99:1949,0,2258 1 26448849 rs17356867 T C 2341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.689;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-1.265;SOR=0.739 GT:AD:DP:GQ:PL 0/1:98,94:192:99:2370,0,2432 1 26496632 rs76775439 C T 3838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=1.79;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.571;QD=11.06;ReadPosRankSum=-0.375;SOR=0.587 GT:AD:DP:GQ:PL 0/1:191,156:347:99:3867,0,4892 1 26496651 rs7087 T C 3911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.763;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.533;QD=11.96;ReadPosRankSum=-1.24;SOR=0.698 GT:AD:DP:GQ:PL 0/1:176,151:327:99:3940,0,4480 1 26511613 rs375307370 C A 2118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.655;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=0.776;SOR=0.864 GT:AD:DP:GQ:PL 0/1:144,106:250:99:2147,0,3579 1 26511631 rs368996857 G A 2150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=0.949;SOR=0.736 GT:AD:DP:GQ:PL 0/1:134,103:237:99:2179,0,3402 1 26515416 rs61762998 G A 2845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.454;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-1.008;QD=11.47;ReadPosRankSum=-2.103;SOR=0.589 GT:AD:DP:GQ:PL 0/1:122,126:248:99:2874,0,3049 1 26520292 rs12138368 G T 1138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-0.231;SOR=0.952 GT:AD:DP:GQ:PL 0/1:38,50:88:99:1167,0,868 1 26526554 rs6700024 G A 1610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=1.008;SOR=0.778 GT:AD:DP:GQ:PL 0/1:79,69:148:99:1639,0,1936 1 26527304 rs12121284 T C 1962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.513;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.3;ReadPosRankSum=0.164;SOR=0.751 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,49:88:99:0|1:26527304_T_C:1991,0,1528 1 26527310 rs12118976 C G 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.034;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.09;ReadPosRankSum=0.773;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,52:98:99:0|1:26527304_T_C:1997,0,1655 1 26527325 rs80228909 G A 1098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=0.199;SOR=0.698 GT:AD:DP:GQ:PL 0/1:60,53:113:99:1127,0,1457 1 26527884 rs41310785 G A 1559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.388;SOR=0.585 GT:AD:DP:GQ:PL 0/1:53,69:122:99:1588,0,1312 1 26527941 rs114575246 G A 1197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.006;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-0.929;SOR=0.663 GT:AD:DP:GQ:PL 0/1:63,56:119:99:1226,0,2370 1 26527951 rs6657616 G A 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.162;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=1.039;SOR=0.655 GT:AD:DP:GQ:PL 0/1:56,65:121:99:1607,0,2085 1 26582091 rs3795686 G A 1867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.205;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.284;SOR=0.628 GT:AD:DP:GQ:PL 0/1:72,81:153:99:1896,0,1973 1 26608782 rs34209692 C T 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.346;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=1.072;QD=7.16;ReadPosRankSum=0.188;SOR=0.842 GT:AD:DP:GQ:PL 0/1:192,109:301:99:2183,0,5090 1 26608811 . TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA T 6122.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.139;ClippingRankSum=0;DP=398;ExcessHet=3.0103;FS=11.085;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.012;QD=18.44;ReadPosRankSum=0.444;SOR=0.442 GT:AD:DP:GQ:PGT:PID:PL 0/1:169,163:332:99:0|1:26608811_TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA_T:6160,0,6481 1 26608814 rs6672357 A G 2615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.881;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0.683;QD=11.04;ReadPosRankSum=-1.615;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,74:237:99:1|0:26608811_TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA_T:2644,0,6421 1 26608825 . TGGGGCCG T 2949.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.754;ClippingRankSum=0;DP=313;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.731;QD=11.89;ReadPosRankSum=-4.999;SOR=0.837 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,85:248:99:1|0:26608811_TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA_T:2987,0,6385 1 26608835 . ACCGGGACCGGGACTGGG A 2949.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.187;ClippingRankSum=0;DP=310;ExcessHet=3.0103;FS=4.639;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.718;QD=12.04;ReadPosRankSum=-4.908;SOR=0.934 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,82:245:99:1|0:26608811_TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA_T:2987,0,6385 1 26609259 rs7522905 C T 10324.8 PASS AC=2;AF=1;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,338:338:99:10353,1012,0 1 26610891 rs4332350 A C 11261.8 PASS AC=2;AF=1;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,379:379:99:11290,1134,0 1 26612042 rs11247898 A G 3718.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.2;SOR=1.428 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3747,336,0 1 26627478 rs2276712 T C 8640.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8669,868,0 1 26646726 rs1071849 A G 9173.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.99 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,205:205:99:1|1:26646726_A_G:9202,629,0 1 26646730 rs17645 A G 9173.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.1;SOR=0.925 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,208:208:99:1|1:26646726_A_G:9202,629,0 1 26648551 rs11247913 G C 5607.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,173:175:99:5636,519,0 1 26670444 rs36024412 G T 2968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.479;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=5.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.364;SOR=0.843 GT:AD:DP:GQ:PL 0/1:144,122:266:99:2997,0,4049 1 26670609 rs34370465 C T 3294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=4.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-0.775;SOR=0.879 GT:AD:DP:GQ:PL 0/1:159,131:290:99:3323,0,4345 1 26670752 rs11247923 C T 3855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.402;SOR=0.705 GT:AD:DP:GQ:PL 0/1:194,162:356:99:3884,0,5007 1 26671084 rs12562454 G T 2381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.84;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=2.765;SOR=0.714 GT:AD:DP:GQ:PL 0/1:132,98:230:99:2410,0,3523 1 26671248 rs57268417 A G 4264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-2.06;QD=12.51;ReadPosRankSum=-0.468;SOR=0.683 GT:AD:DP:GQ:PL 0/1:175,166:341:99:4293,0,4579 1 26673076 rs11247924 G A 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.678;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.509;SOR=0.706 GT:AD:DP:GQ:PL 0/1:112,108:220:99:2500,0,2611 1 26673108 rs11247925 C T 2418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=1.602;SOR=0.635 GT:AD:DP:GQ:PL 0/1:113,107:220:99:2447,0,2677 1 26689659 rs11247932 G A 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.56;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=0.463;SOR=0.758 GT:AD:DP:GQ:PL 0/1:92,64:156:99:1551,0,2385 1 26691174 rs11247933 C A 3282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.082;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-0.948;QD=11.68;ReadPosRankSum=1.594;SOR=0.694 GT:AD:DP:GQ:PL 0/1:148,133:283:99:3311,0,3600 1 26691286 rs372936882 CCCACCGAGCGCTGGGGTGCCCCAG C 4510.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.324;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=3.347;QD=14.05;ReadPosRankSum=0.758;SOR=0.723 GT:AD:DP:GQ:PL 0/1:196,125:321:99:4548,0,8981 1 26694245 rs10794531 T C 3025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.413;SOR=0.65 GT:AD:DP:GQ:PL 0/1:109,127:236:99:3054,0,2611 1 26856462 rs11800553 T G 3455.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3484,345,0 1 26879920 rs4970490 T C 2990.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3019,309,0 1 26900708 rs2229714 G A 4881.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4910,477,0 1 27210721 rs3170660 T C 1883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.671;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=1.739;SOR=0.627 GT:AD:DP:GQ:PL 0/1:56,82:138:99:1912,0,1130 1 27248440 rs35108146 C T 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-1.169;SOR=0.608 GT:AD:DP:GQ:PL 0/1:69,70:139:99:1748,0,1703 1 27278521 rs3010110 G A 3755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.341;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=2.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=2.001;SOR=0.555 GT:AD:DP:GQ:PL 0/1:188,165:353:99:3784,0,5068 1 27278553 rs3010109 G A 3799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.449;SOR=0.669 GT:AD:DP:GQ:PL 0/1:169,160:329:99:3828,0,6374 1 27278573 rs17360994 T C 4616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=-0.631;SOR=0.781 GT:AD:DP:GQ:PL 0/1:152,174:326:99:4645,0,5628 1 27320356 rs6689941 T C 10336.8 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,333:333:99:10365,1000,0 1 27320814 rs4077651 C G 1156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.864;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=0.687;SOR=0.762 GT:AD:DP:GQ:PL 0/1:43,45:88:99:1185,0,1080 1 27332465 rs61737591 G A 5851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.64;ReadPosRankSum=-0.155;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:146,152:298:99:0|1:27332465_G_A:5880,0,7393 1 27332466 rs61737590 T C 5851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.231;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.7;ReadPosRankSum=-0.34;SOR=0.642 GT:AD:DP:GQ:PGT:PID:PL 0/1:145,152:297:99:0|1:27332465_G_A:5880,0,7393 1 27339105 rs35810604 C T 3632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.062;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=1.333;SOR=0.618 GT:AD:DP:GQ:PL 0/1:139,149:288:99:3661,0,3654 1 27426796 rs4266911 T C 3924.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.98;SOR=1.456 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3953,357,0 1 27427041 rs4418629 T C 5238.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.144 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5267,489,0 1 27428321 rs6598870 T C 1283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=-0.516;SOR=0.877 GT:AD:DP:GQ:PL 0/1:44,52:96:99:1312,0,999 1 27480757 rs34306208 A G 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.342;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=6.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.25;SOR=1.16 GT:AD:DP:GQ:PL 0/1:82,70:152:99:1765,0,1894 1 27676925 rs6702341 G A 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.17;ReadPosRankSum=0.206;SOR=0.788 GT:AD:DP:GQ:PL 0/1:84,56:140:99:1172,0,2019 1 27679797 rs3813795 A G 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.49;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-2.273;SOR=0.971 GT:AD:DP:GQ:PL 0/1:94,96:190:99:2389,0,2232 1 27679954 rs1128918 G A 2405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.567;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=5.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.403;SOR=1.059 GT:AD:DP:GQ:PL 0/1:107,96:203:99:2434,0,2545 1 27680292 rs8533 A G 2512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.112;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.87;ReadPosRankSum=0.366;SOR=0.7 GT:AD:DP:GQ:PL 0/1:72,97:169:99:2541,0,1531 1 27688633 rs1138294 G A 2920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=1.092;SOR=0.689 GT:AD:DP:GQ:PL 0/1:95,121:216:99:2949,0,2180 1 27736325 . CGGA C 4623.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.906;ClippingRankSum=0;DP=287;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=59.61;MQRankSum=-3.065;QD=19.11;ReadPosRankSum=-0.827;SOR=0.584 GT:AD:DP:GQ:PL 0/1:119,123:245:99:4661,0,4649 1 27875824 rs4908364 C T 11485.8 PASS AC=2;AF=1;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,380:380:99:11514,1138,0 1 27876482 rs2076457 C A 4977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.146;ClippingRankSum=0;DB;DP=411;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.619;SOR=0.527 GT:AD:DP:GQ:PL 0/1:206,203:409:99:5006,0,5020 1 28209305 rs3766398 A G 3354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.131;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=1.396;SOR=0.566 GT:AD:DP:GQ:PL 0/1:139,131:270:99:3383,0,3415 1 28209362 rs3766399 T C 5186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.58;ReadPosRankSum=1.05;SOR=0.649 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,133:252:99:0|1:28209362_T_C:5215,0,5613 1 28209366 rs3766400 A G 5122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.339;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.49;ReadPosRankSum=-0.347;SOR=0.647 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,133:250:99:0|1:28209362_T_C:5151,0,5619 1 28303893 rs181616029 T C 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.855;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=0.407;SOR=0.707 GT:AD:DP:GQ:PL 0/1:65,71:136:99:1783,0,1582 1 28555426 rs567086 G A 1293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.573;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=2.07;SOR=0.475 GT:AD:DP:GQ:PL 0/1:73,57:130:99:1322,0,1757 1 28562676 rs12154 A G 1763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=5.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=1.465;SOR=0.379 GT:AD:DP:GQ:PL 0/1:67,72:139:99:1792,0,1729 1 28564252 rs8559 A G 1832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.894;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=3.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=0.89;SOR=0.622 GT:AD:DP:GQ:PL 0/1:84,73:157:99:1861,0,2054 1 28564279 rs9508 A G 1841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=3.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.212;SOR=0.549 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1870,0,2102 1 28733993 rs12091029 G T 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.8;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=1.397;SOR=0.711 GT:AD:DP:GQ:PL 0/1:30,26:56:99:566,0,727 1 28800380 rs61785974 C A 2923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.38;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=1.552;SOR=0.8 GT:AD:DP:GQ:PL 0/1:88,116:204:99:2952,0,2289 1 28861636 rs2066726 G A 1238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=1.547;SOR=0.596 GT:AD:DP:GQ:PL 0/1:87,57:144:99:1267,0,2223 1 29138975 rs1042114 G T 8061.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.411;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=3.341;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.87;ReadPosRankSum=-0.686;SOR=0.475 GT:AD:DP:GQ:PL 1/1:1,299:300:99:8090,887,0 1 29139140 rs12133192 C G 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.996;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=5.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.902;SOR=1.077 GT:AD:DP:GQ:PL 0/1:98,77:175:99:1806,0,2202 1 29189597 rs2234918 C T 2530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=5.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-2.07;SOR=0.68 GT:AD:DP:GQ:PL 0/1:123,98:221:99:2559,0,3457 1 29475341 rs2230678 C T 609.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.87;SOR=1.739 GT:AD:DP:GQ:PL 1/1:0,17:17:51:638,51,0 1 29475394 rs2230677 C G 430.77 SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.9;SOR=5.136 GT:AD:DP:GQ:PL 1/1:0,12:12:36:459,36,0 1 29475648 rs2230679 T G 9174.77 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,315:315:99:9203,944,0 1 29529699 rs1062924 T C 4741.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4770,510,0 1 29542637 rs1128400 A G 5944.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5973,579,0 1 29557224 rs2640466 C T 4898.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.756 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4927,499,0 1 29631909 rs2235937 A G 4845.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4874,495,0 1 31351513 rs1891419 G A 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.875;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=1.716;SOR=0.687 GT:AD:DP:GQ:PL 0/1:64,55:119:99:1330,0,1551 1 31409473 rs201905426 T TGC 3088.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.06;ReadPosRankSum=-1.154;SOR=0.71 GT:AD:DP:GQ:PL 0/1:93,78:171:99:3126,0,3678 1 31426815 rs2275741 A G 4082.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4111,413,0 1 31883295 rs6701521 T C 1662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.289;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=-0.593;SOR=0.749 GT:AD:DP:GQ:PL 0/1:47,61:108:99:1691,0,1239 1 31898162 rs4949401 C T 502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.815;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=-1.416;SOR=1.275 GT:AD:DP:GQ:PL 0/1:35,24:59:99:531,0,805 1 31898234 rs4949402 T C 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.782;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.76;SOR=0.929 GT:AD:DP:GQ:PL 0/1:43,37:80:99:941,0,1003 1 31899684 rs10454445 A T 4199.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=1.574 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4228,392,0 1 31902279 rs34728687 G A 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.272;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.031;SOR=0.607 GT:AD:DP:GQ:PL 0/1:74,86:160:99:2088,0,1676 1 31905889 rs3050461 A ACAG 3543.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.559;QD=20.97;ReadPosRankSum=-0.856;SOR=0.506 GT:AD:DP:GQ:PL 0/1:77,92:174:99:3581,0,3047 1 32084904 rs1056526 C T 1895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=0.241;SOR=0.676 GT:AD:DP:GQ:PL 0/1:100,89:189:99:1924,0,2445 1 32092525 rs2271933 A G 2334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.076;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=0.719;SOR=0.695 GT:AD:DP:GQ:PL 0/1:113,101:214:99:2363,0,2713 1 32096265 rs1061770 A G 2758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.445;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.766;SOR=0.592 GT:AD:DP:GQ:PL 0/1:109,107:216:99:2787,0,2614 1 32127953 rs2271928 G A 3975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.797;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=59.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=0.185;SOR=0.065 GT:AD:DP:GQ:PL 0/1:117,158:275:99:4004,0,2010 1 32148571 rs10737358 A G 6428.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,217:219:99:6457,651,0 1 32155472 rs11589051 G A 1081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=6.231;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=-0.521;SOR=1.426 GT:AD:DP:GQ:PL 0/1:38,42:80:99:1110,0,995 1 32259791 rs34341430 C T 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-0.685;SOR=0.657 GT:AD:DP:GQ:PL 0/1:69,60:129:99:1441,0,1728 1 32266026 rs552124 A G 3659.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3688,369,0 1 32381592 . TA T 44.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.89;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.24;ReadPosRankSum=1.386;SOR=0.961 GT:AD:DP:GQ:PL 0/1:27,9:39:82:82,0,613 1 33065947 rs704886 G C 3631.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.43;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3660,336,0 1 33087567 . G GA 71.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.189;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.391;QD=2.05;ReadPosRankSum=-0.985;SOR=0.759 GT:AD:DP:GQ:PL 0/1:27,8:42:99:109,0,410 1 33133968 rs2762904 T C 3806.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=1.258 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3835,351,0 1 33138516 rs607202 A C 2527.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=1.639 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2556,239,0 1 33160878 rs360042 C T 7722.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7751,717,0 1 33161212 rs360041 T C 8171.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8200,789,0 1 33235626 rs3737995 G A 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=8.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=1.808;SOR=0.61 GT:AD:DP:GQ:PL 0/1:154,127:281:99:2866,0,3693 1 33430102 rs113840389 T G 667.77 SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.74;SOR=5.67 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,16:16:48:1|1:33430102_T_G:696,48,0 1 33430121 rs113914269 G T 608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.29;ReadPosRankSum=0.803;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,23:30:99:0|1:33430102_T_G:637,0,162 1 33646950 rs622407 A G 9018.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.23;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,256:256:99:9047,769,0 1 33760743 rs4641276 T C 6697.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.83;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6726,595,0 1 33836164 rs41265897 G A 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-2.911;SOR=0.704 GT:AD:DP:GQ:PL 0/1:69,53:122:99:1175,0,1753 1 33957152 rs4403594 T G 7150.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.61;ReadPosRankSum=-0.128;SOR=0.887 GT:AD:DP:GQ:PL 1/1:2,257:259:99:7179,707,0 1 33960062 rs9943259 A G 2522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.156;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=2.044;SOR=0.774 GT:AD:DP:GQ:PL 0/1:102,102:204:99:2551,0,2476 1 34071525 rs1874045 C T 1421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.268;SOR=0.754 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1450,0,1824 1 34189917 rs519370 C T 2308.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=31.2;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2337,222,0 1 34285342 rs17342512 G A 1906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.451;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=0.26;SOR=0.719 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1935,0,2184 1 34285381 rs11578857 C T 1519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=-0.99;SOR=0.728 GT:AD:DP:GQ:PL 0/1:87,68:155:99:1548,0,2172 1 34329897 rs911218 T C 1969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=5.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=1.109;SOR=0.358 GT:AD:DP:GQ:PL 0/1:61,80:141:99:1998,0,1473 1 34330067 rs10379 A C 2425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.5;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.858;SOR=0.569 GT:AD:DP:GQ:PL 0/1:115,91:206:99:2454,0,2967 1 35223345 rs3738345 G A 1955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=-0.2;SOR=0.676 GT:AD:DP:GQ:PL 0/1:58,78:136:99:1984,0,1519 1 35259961 rs1764390 A G 2226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.088;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.65;ReadPosRankSum=0.737;SOR=0.697 GT:AD:DP:GQ:PL 0/1:67,85:152:99:2255,0,1737 1 35260202 rs41266431 G A 2038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.69;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.54;SOR=0.732 GT:AD:DP:GQ:PL 0/1:95,86:181:99:2067,0,2633 1 35486072 rs11476047 TA T 609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=1.376;SOR=0.64 GT:AD:DP:GQ:PL 0/1:35,35:76:99:638,0,809 1 35561510 rs2101973 G A 707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=5.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.33;ReadPosRankSum=-0.375;SOR=0.283 GT:AD:DP:GQ:PL 0/1:50,35:85:99:736,0,1243 1 35562965 rs2971408 G A 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=0.626;SOR=0.53 GT:AD:DP:GQ:PL 0/1:93,72:165:99:1528,0,2210 1 36202585 rs35490896 G A 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.444;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-1.168;SOR=0.784 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1515,0,1835 1 36203659 rs200760879 TTTC T 1000.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.563;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.96;ReadPosRankSum=1.249;SOR=0.765 GT:AD:DP:GQ:PL 0/1:32,27:59:99:1038,0,1247 1 36203714 rs200967861 AATATATAT A 91.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.28;ReadPosRankSum=3.476;SOR=1.002 GT:AD:DP:GQ:PL 0/1:19,9:28:99:129,0,616 1 36203715 . ATAT A 139.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.59;ReadPosRankSum=-0.514;SOR=1.051 GT:AD:DP:GQ:PL 0/1:18,7:32:99:177,0,605 1 36216835 rs535638 C T 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.631;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=0.721;SOR=0.666 GT:AD:DP:GQ:PL 0/1:54,62:116:99:1558,0,1175 1 36225948 rs7537203 T C 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.781;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=3.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.91;ReadPosRankSum=1.158;SOR=1.186 GT:AD:DP:GQ:PL 0/1:42,57:99:99:1504,0,890 1 36316571 rs4652895 A C 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=1.11;SOR=0.816 GT:AD:DP:GQ:PL 0/1:89,119:208:99:2794,0,1973 1 36553673 rs399393 A G 2527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.984;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.078;SOR=0.708 GT:AD:DP:GQ:PL 0/1:99,103:202:99:2556,0,2179 1 36563158 rs3738360 C A 744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=-1.179;SOR=0.887 GT:AD:DP:GQ:PL 0/1:54,35:89:99:773,0,1396 1 36563524 rs35841184 G A 3408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.635;SOR=0.68 GT:AD:DP:GQ:PL 0/1:148,147:295:99:3437,0,3385 1 36602943 rs2231318 C T 853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=1.7;SOR=0.505 GT:AD:DP:GQ:PL 0/1:66,39:105:99:882,0,1657 1 36642420 rs475591 T C 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=8.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.912;SOR=1.092 GT:AD:DP:GQ:PL 0/1:150,140:290:99:3075,0,3600 1 36773819 rs11263871 C G 1839.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1868,189,0 1 36820927 rs11263875 G A 6175.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6204,635,0 1 36927733 rs7065 G A 3331.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3360,344,0 1 36937059 rs3917981 A G 7727.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.93;SOR=0.979 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,172:172:99:1|1:36937059_A_G:7756,521,0 1 36937065 rs3917980 A G 7984.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.87;SOR=0.909 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,182:182:99:1|1:36937059_A_G:8013,548,0 1 37949052 rs17849897 G A 3647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.195;SOR=0.704 GT:AD:DP:GQ:PL 0/1:167,147:314:99:3676,0,4458 1 38006359 rs2174769 A G 4733.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=1.514 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4762,435,0 1 38019747 rs2273013 C T 4193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=-0.075;SOR=0.673 GT:AD:DP:GQ:PL 0/1:123,171:294:99:4222,0,2934 1 38049552 rs6426024 C G 868.77 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,30:30:90:897,90,0 1 38173983 rs368589115 TTTC T 1533.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.808;QD=17.83;ReadPosRankSum=0.041;SOR=0.701 GT:AD:DP:GQ:PL 0/1:44,42:86:99:1571,0,1877 1 38227086 rs4653328 A T 3734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.247;SOR=0.812 GT:AD:DP:GQ:PL 0/1:163,160:323:99:3763,0,3862 1 38272660 rs2291297 G A 2591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=1.536;SOR=0.834 GT:AD:DP:GQ:PL 0/1:85,101:186:99:2620,0,2204 1 38289383 rs12751325 T C 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.552;SOR=0.99 GT:AD:DP:GQ:PL 0/1:27,24:51:99:567,0,628 1 38323142 rs41267341 G T 1583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.994;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=7.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-1.577;SOR=1.121 GT:AD:DP:GQ:PL 0/1:78,63:141:99:1612,0,1958 1 38327982 rs3843 G T 2088.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.85;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2117,224,0 1 38338795 rs11488569 A G 2599.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=1.264 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2628,243,0 1 38397341 rs34655914 G A 2998.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.63;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3027,340,0 1 38397369 rs35267671 C T 4185.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4214,421,0 1 38411445 rs871524 G A 4353.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4382,459,0 1 38423853 rs9293 G C 2085.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2114,210,0 1 38435227 rs140845717 T C 806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.643;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-0.219;SOR=0.722 GT:AD:DP:GQ:PL 0/1:56,32:88:99:835,0,1398 1 38442547 rs10890216 G A 1953.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1982,201,0 1 38450367 rs6680796 A G 1573.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1602,168,0 1 38464639 rs4570384 C G 4704.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.45;SOR=1.467 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4733,435,0 1 39311617 rs11549874 T G 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=-0.111;SOR=0.745 GT:AD:DP:GQ:PL 0/1:24,47:71:99:1162,0,571 1 39325063 rs1925678 T C 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.683;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1.088;QD=13.92;ReadPosRankSum=1.43;SOR=1.198 GT:AD:DP:GQ:PL 0/1:60,73:133:99:1879,0,1470 1 39330399 rs3828041 G A 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.578;SOR=0.602 GT:AD:DP:GQ:PL 0/1:36,34:70:99:803,0,932 1 39340504 rs41270783 T G 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.143;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=0.018;SOR=0.893 GT:AD:DP:GQ:PL 0/1:98,70:168:99:1682,0,2573 1 39340862 rs874243 A G 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.179;SOR=1.066 GT:AD:DP:GQ:PL 0/1:66,67:133:99:1708,0,1829 1 39717566 rs2490948 T C 5165.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5194,512,0 1 39748921 rs2275188 G A 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.434;SOR=0.678 GT:AD:DP:GQ:PL 0/1:62,66:128:99:1528,0,1504 1 39766041 rs41270803 A G 2374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.789;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=2.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.31;ReadPosRankSum=-0.296;SOR=0.492 GT:AD:DP:GQ:PL 0/1:66,100:166:99:2403,0,2401 1 39796844 rs201626891 CTTTTTTTTTTT C,CTTTTTTTTTT 1428.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=2.297;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=47.62;ReadPosRankSum=0.951;SOR=0.662 GT:AD:DP:GQ:PL 1/2:3,19,8:61:99:1466,114,573,1332,0,1351 1 39797055 rs16826069 A G 2326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.548;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.024;SOR=0.884 GT:AD:DP:GQ:PL 0/1:91,93:184:99:2355,0,2244 1 39801815 rs41270807 A C 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.605;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=5.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.227;SOR=1.085 GT:AD:DP:GQ:PL 0/1:69,73:142:99:2023,0,1712 1 39806610 rs3116396 C T 3068.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3097,302,0 1 39812822 rs2761764 C A 3469.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=1.159 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3498,336,0 1 39815143 rs16826093 T A 1123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-1.072;SOR=0.591 GT:AD:DP:GQ:PL 0/1:68,49:117:99:1152,0,1827 1 39823032 rs147223845 A AT 1235.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.045;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-1.278;SOR=0.763 GT:AD:DP:GQ:PL 0/1:61,57:122:99:1273,0,1180 1 39835817 rs2296172 A G 1519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.764;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.567;SOR=0.653 GT:AD:DP:GQ:PL 0/1:78,66:144:99:1548,0,1693 1 39908506 rs587404 G A 1929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.029;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.377;SOR=0.745 GT:AD:DP:GQ:PL 0/1:76,92:168:99:1958,0,1833 1 39913351 rs2296173 A G 1460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.09;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=5.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.38;ReadPosRankSum=-0.681;SOR=1.194 GT:AD:DP:GQ:PL 0/1:41,54:95:99:1489,0,912 1 39914363 rs668556 G C 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.243;SOR=0.641 GT:AD:DP:GQ:PL 0/1:66,53:119:99:1364,0,1691 1 39951304 rs138819868 T G 1979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.512;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=1.57;SOR=0.666 GT:AD:DP:GQ:PL 0/1:113,79:192:99:2008,0,2708 1 39957913 rs4660269 A G 13448.8 PASS AC=2;AF=1;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=31.72;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,424:424:99:13477,1272,0 1 39977575 rs200415763 C T 763.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=30.55;SOR=6.518 GT:AD:DP:GQ:PL 1/1:0,25:25:75:792,75,0 1 40035686 rs17513135 C T 1587.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.08;SOR=2.03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1616,144,0 1 40098328 rs784625 T C 4316.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4345,457,0 1 40149642 rs784634 G T 5799.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5828,591,0 1 40150156 rs9662128 G A 4734.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4763,474,0 1 40235448 rs150795467 C T 2387.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.89;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=50.6;MQRankSum=-16.867;QD=6.01;ReadPosRankSum=4.906;SOR=0.743 GT:AD:DP:GQ:PL 0/1:256,141:397:99:2416,0,6497 1 40235489 rs77857664 T C 1883.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=7.53;MLEAC=1;MLEAF=0.5;MQ=52.32;MQRankSum=-16.502;QD=5.06;ReadPosRankSum=-3.141;SOR=0.926 GT:AD:DP:GQ:PL 0/1:260,112:372:99:1912,0,6751 1 40236074 rs230321 A C 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=8.974;MLEAC=1;MLEAF=0.5;MQ=53.88;MQRankSum=-0.377;QD=5.02;ReadPosRankSum=-1.072;SOR=1.037 GT:AD:DP:GQ:PL 0/1:131,47:178:99:921,0,3572 1 40349131 rs3845570 G A 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.511;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-0.326;SOR=0.678 GT:AD:DP:GQ:PL 0/1:85,92:177:99:2286,0,2026 1 40363054 rs3134614 G C 3282.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.84;SOR=1.839 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3311,291,0 1 40533266 rs11207440 T G 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.2;SOR=2.247 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,84:84:99:1|1:40533266_T_G:3573,253,0 1 40533287 rs6665926 T G 3613.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.51;SOR=2.625 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,85:85:99:1|1:40533266_T_G:3642,259,0 1 40533315 rs6665933 T G 3970.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.12;SOR=2.409 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,90:90:99:1|1:40533315_T_G:3999,271,0 1 40533320 rs6665936 T G 4105.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.62;SOR=2.409 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,90:90:99:1|1:40533315_T_G:4134,280,0 1 40533326 rs6665937 T G 4129.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.38;SOR=2.033 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,91:91:99:1|1:40533315_T_G:4158,280,0 1 40533347 rs6665944 T G 4089.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.98;SOR=1.584 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,93:93:99:1|1:40533315_T_G:4118,283,0 1 40533358 rs34763876 G A 926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.391;SOR=0.631 GT:AD:DP:GQ:PL 0/1:47,42:89:99:955,0,1226 1 40539203 rs3841663 A ATGAT 5127.73 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=44.98;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,114:114:99:5165,346,0 1 40737589 rs2076697 T C 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.652;SOR=0.651 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1172,0,1223 1 40769588 rs112370406 C T 2814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.344;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-1.363;SOR=0.671 GT:AD:DP:GQ:PL 0/1:145,130:275:99:2843,0,3656 1 40773149 rs2228564 T C 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.97;ReadPosRankSum=-0.982;SOR=0.602 GT:AD:DP:GQ:PL 0/1:93,49:142:99:1018,0,2286 1 40776752 rs3737815 C A 2007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-0.11;SOR=0.586 GT:AD:DP:GQ:PL 0/1:79,76:155:99:2036,0,2145 1 40777800 rs1979785 T G 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.112;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-0.058;SOR=0.824 GT:AD:DP:GQ:PL 0/1:36,44:80:99:1166,0,745 1 40840353 rs1003710 A G 2608.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.99;QD=30.69;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2637,252,0 1 40881041 rs209606 C G 2473.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.49;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2502,270,0 1 40923019 rs2272994 G A 1070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=0.364;SOR=0.493 GT:AD:DP:GQ:PL 0/1:62,50:112:99:1099,0,1543 1 40980559 rs1134586 G A 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.2;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-1.311;SOR=0.77 GT:AD:DP:GQ:PL 0/1:67,76:143:99:1862,0,1545 1 40980731 rs11208299 G T 4641.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.935;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.19;ReadPosRankSum=-0.482;SOR=0.331 GT:AD:DP:GQ:PL 1/1:1,158:159:99:4670,465,0 1 41013015 rs2297755 C T 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-0.571;SOR=0.623 GT:AD:DP:GQ:PL 0/1:104,76:180:99:1838,0,2477 1 41101572 rs2253835 A G 7064.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.193 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7093,711,0 1 41107612 rs2076332 C G 1952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=-0.4;SOR=1.047 GT:AD:DP:GQ:PL 0/1:68,64:132:99:1981,0,1948 1 41204569 rs1057925 C T 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.177;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.627;SOR=0.851 GT:AD:DP:GQ:PL 0/1:63,81:144:99:1765,0,1287 1 41282919 rs13374844 C T 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.289;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.24;ReadPosRankSum=1.355;SOR=0.646 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,49:117:99:0|1:41282919_C_T:1811,0,3369 1 41282921 rs13374845 C T 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.129;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.37;ReadPosRankSum=1.57;SOR=0.614 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,48:116:99:0|1:41282919_C_T:1811,0,3369 1 41284366 rs2361660 G C 5562.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5591,552,0 1 41285087 rs4660468 T C 6394.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6423,633,0 1 41285553 rs55737429 T C 703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.334;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-1.184;SOR=1.044 GT:AD:DP:GQ:PL 0/1:31,25:56:99:732,0,732 1 41466681 rs140062309 CCT C 1391.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.763;QD=14.2;ReadPosRankSum=-0.321;SOR=1.014 GT:AD:DP:GQ:PL 0/1:59,39:98:99:1429,0,2635 1 41466803 rs12718433 G A 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.268;QD=12.69;ReadPosRankSum=0.791;SOR=0.889 GT:AD:DP:GQ:PL 0/1:46,59:105:99:1361,0,989 1 41482976 rs79974017 A G 3330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.678;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-2.442;SOR=0.634 GT:AD:DP:GQ:PL 0/1:121,138:259:99:3359,0,2752 1 41485902 rs3738368 C G 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=0.005;SOR=0.574 GT:AD:DP:GQ:PL 0/1:91,75:166:99:1910,0,2311 1 41618297 rs114233776 G A 1756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.204;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=1.051;SOR=0.63 GT:AD:DP:GQ:PL 0/1:118,81:199:99:1785,0,2798 1 41848060 rs12092825 C T 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.163;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.6;ReadPosRankSum=-0.081;SOR=0.787 GT:AD:DP:GQ:PL 0/1:34,58:92:99:1555,0,768 1 41848296 rs4359027 G A 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.669;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.644;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=0.737;QD=7.79;ReadPosRankSum=0.046;SOR=0.915 GT:AD:DP:GQ:PL 0/1:116,61:177:99:1407,0,2912 1 42619152 rs2297567 C A 944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.144;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.16;ReadPosRankSum=-0.338;SOR=0.758 GT:AD:DP:GQ:PL 0/1:83,49:132:99:973,0,1965 1 42630364 rs2071499 G A 948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.744;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=2.067;SOR=0.771 GT:AD:DP:GQ:PL 0/1:57,43:100:99:977,0,1346 1 42693597 rs343376 A G 875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=0.675;SOR=0.835 GT:AD:DP:GQ:PL 0/1:30,36:66:99:904,0,749 1 42846786 rs11210626 G C 2543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.118;SOR=0.688 GT:AD:DP:GQ:PL 0/1:101,107:208:99:2572,0,2239 1 42880516 rs1055055 T C 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=9.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=-0.962;SOR=1.102 GT:AD:DP:GQ:PL 0/1:70,90:160:99:2346,0,1642 1 42896441 rs41301052 C A 1878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=-1.166;SOR=0.813 GT:AD:DP:GQ:PL 0/1:103,92:195:99:1907,0,2299 1 42898843 rs1034268 A G 2331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.839;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.949;SOR=0.667 GT:AD:DP:GQ:PL 0/1:131,100:231:99:2360,0,2924 1 43119661 rs16829829 C A 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=1.304;SOR=0.846 GT:AD:DP:GQ:PL 0/1:57,46:103:99:1032,0,1405 1 43201534 rs4660658 G A 2374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-2.056;SOR=0.679 GT:AD:DP:GQ:PL 0/1:139,104:243:99:2403,0,3467 1 43201614 rs9660973 C T 1524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=0.86;SOR=0.469 GT:AD:DP:GQ:PL 0/1:103,70:173:99:1553,0,2723 1 43212431 rs4660662 A G 6200.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6229,567,0 1 43212926 rs67014447 G A 3697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0;DB;DP=352;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.372;SOR=0.682 GT:AD:DP:GQ:PL 0/1:186,166:352:99:3726,0,4477 1 43223489 rs6700677 C T 1681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-1.391;SOR=0.48 GT:AD:DP:GQ:PL 0/1:65,69:134:99:1710,0,1568 1 43232504 rs55716016 C A 3064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=2.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.006;SOR=0.541 GT:AD:DP:GQ:PL 0/1:168,125:293:99:3093,0,4453 1 43233072 rs375132855 C T 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.901;SOR=0.681 GT:AD:DP:GQ:PL 0/1:105,95:200:99:2344,0,2723 1 43296173 rs33950227 C T 1091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=0.215;SOR=0.491 GT:AD:DP:GQ:PL 0/1:69,54:123:99:1120,0,1693 1 43296195 rs33953680 C T 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=0.499;SOR=0.719 GT:AD:DP:GQ:PL 0/1:60,44:104:99:1012,0,1633 1 43610910 rs626842 T G 1241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=1.294;SOR=0.685 GT:AD:DP:GQ:PL 0/1:63,56:119:99:1270,0,1394 1 43618596 rs12074551 G A 2115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.399;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.904;SOR=0.555 GT:AD:DP:GQ:PL 0/1:71,90:161:99:2144,0,1874 1 43632536 rs7163 C T 2072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.935;SOR=0.609 GT:AD:DP:GQ:PL 0/1:108,96:204:99:2101,0,2550 1 43632815 rs1749438 T G 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.306;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.28;ReadPosRankSum=-0.031;SOR=1.069 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,34:79:99:0|1:43632815_T_G:1314,0,2327 1 43632816 rs1782374 T C 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.207;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.28;ReadPosRankSum=-0.249;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,35:79:99:0|1:43632815_T_G:1314,0,2327 1 43636484 rs1049276 C G 3566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=1.853;SOR=0.642 GT:AD:DP:GQ:PL 0/1:119,152:271:99:3595,0,2832 1 43637549 rs1691289 A G 2183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.479;SOR=0.614 GT:AD:DP:GQ:PL 0/1:102,89:191:99:2212,0,2655 1 43637932 rs9519 T C 3611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=0.615;SOR=0.651 GT:AD:DP:GQ:PL 0/1:130,142:272:99:3640,0,3290 1 43638410 rs1782386 G C 893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-0.574;SOR=0.582 GT:AD:DP:GQ:PL 0/1:56,38:94:99:922,0,1565 1 43638457 rs1782387 T A 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=4.945;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=1.274;SOR=1.085 GT:AD:DP:GQ:PL 0/1:85,63:148:99:1327,0,2009 1 43649508 rs663824 A G 2299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.12;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.658;SOR=0.637 GT:AD:DP:GQ:PL 0/1:117,99:216:99:2328,0,2860 1 43652369 rs6413971 T C 4250.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4279,405,0 1 43663376 rs513009 A G 4501.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4530,441,0 1 43664218 rs603123 C T 1629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.271;SOR=0.797 GT:AD:DP:GQ:PL 0/1:90,73:163:99:1658,0,2226 1 43664319 rs10711519 TA T 875.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.027;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.62;ReadPosRankSum=1.21;SOR=1.06 GT:AD:DP:GQ:PL 0/1:65,50:119:99:913,0,1507 1 43675467 rs2453412 G A 5847.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5876,561,0 1 43675499 rs41301054 C T 2754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.801;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=2.383;SOR=0.772 GT:AD:DP:GQ:PL 0/1:105,116:221:99:2783,0,2357 1 43699935 rs2477561 C T 5278.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=1.679 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5307,520,0 1 43771016 rs3831248 TA T 3168.73 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=35.21;SOR=1.508 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3206,271,0 1 43779564 rs3120276 T C 6603.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6632,705,0 1 43886494 rs2782643 C T 2220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.142;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.593;SOR=0.484 GT:AD:DP:GQ:PL 0/1:108,101:209:99:2249,0,2751 1 43892189 rs2782646 G A 2764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.358;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=1.172;SOR=0.733 GT:AD:DP:GQ:PL 0/1:103,112:215:99:2793,0,2405 1 43901011 rs2039531 A C 1797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.222;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-1.081;SOR=0.836 GT:AD:DP:GQ:PL 0/1:79,75:154:99:1826,0,1895 1 43903589 rs2782648 G T 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.56;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=0.308;SOR=0.739 GT:AD:DP:GQ:PL 0/1:63,79:142:99:1877,0,1448 1 43906896 rs2027130 A G 2753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.532;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=1.665;SOR=0.551 GT:AD:DP:GQ:PL 0/1:130,108:238:99:2782,0,3231 1 43909265 rs2255632 T C 2913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.534;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=-1.194;SOR=0.649 GT:AD:DP:GQ:PL 0/1:98,102:200:99:2942,0,2348 1 43917637 rs2251802 G A 1221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=1.179;SOR=0.645 GT:AD:DP:GQ:PL 0/1:103,57:160:99:1250,0,2599 1 43919413 rs6692611 A G 3399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.871;SOR=0.648 GT:AD:DP:GQ:PL 0/1:129,138:267:99:3428,0,2979 1 44058265 rs3828151 C A 2935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=6.675;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.882;QD=13.65;ReadPosRankSum=2.368;SOR=0.582 GT:AD:DP:GQ:PL 0/1:93,122:215:99:2964,0,2103 1 44070691 rs17371903 A G 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.115;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-2.149;SOR=0.811 GT:AD:DP:GQ:PL 0/1:52,47:99:99:1115,0,1170 1 44071221 rs631248 G A 5212.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5241,518,0 1 44072018 rs1065772 C T 2784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.698;SOR=0.51 GT:AD:DP:GQ:PL 0/1:135,125:260:99:2813,0,3140 1 44072066 rs10890266 C T 2420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.844;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=2.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.855;SOR=0.882 GT:AD:DP:GQ:PL 0/1:122,102:224:99:2449,0,2814 1 44083110 rs571862 C T 5220.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.166 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5249,529,0 1 44083507 rs641365 T C 8091.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8120,803,0 1 44083519 rs641351 G A 7275.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7304,760,0 1 44084739 rs1143701 C T 5228.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5257,540,0 1 44086831 rs1143702 C T 3607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-1.134;SOR=0.701 GT:AD:DP:GQ:PL 0/1:129,146:275:99:3636,0,3322 1 44125962 rs3215843 CA C 1007.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.8;SOR=0.706 GT:AD:DP:GQ:PL 0/1:52,45:97:99:1045,0,1334 1 44137257 rs586339 C A 4609.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4638,452,0 1 44290530 rs37458 A G 581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.899;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.72;ReadPosRankSum=1.053;SOR=1.242 GT:AD:DP:GQ:PL 0/1:17,20:37:99:610,0,420 1 44386615 rs3120803 A G 5888.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5917,589,0 1 44395786 rs2108202 C T 2764.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.44 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2793,279,0 1 44401384 rs2242637 A G 3503.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3532,368,0 1 44415415 rs2240447 C T 5622.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5651,558,0 1 44426948 rs2906596 G A 2479.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2508,246,0 1 44595113 rs2429051 G C 2485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.119;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=2.036;SOR=0.646 GT:AD:DP:GQ:PL 0/1:99,96:195:99:2514,0,2751 1 44595410 rs2485652 A G 2003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.745;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=0.639;SOR=0.794 GT:AD:DP:GQ:PL 0/1:120,83:203:99:2032,0,3018 1 44595426 rs2429050 G A 1805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=0.374;SOR=0.692 GT:AD:DP:GQ:PL 0/1:115,82:197:99:1834,0,2894 1 44596379 rs34057178 CCAA C 2432.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.232;QD=16.66;ReadPosRankSum=-1.107;SOR=0.665 GT:AD:DP:GQ:PL 0/1:80,66:146:99:2470,0,3528 1 44805012 rs372090718 TA T 92.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.11;ReadPosRankSum=1.204;SOR=0.544 GT:AD:DP:GQ:PL 0/1:31,13:57:99:130,0,623 1 45504720 rs7551698 G C 2369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=6.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-1.1;SOR=0.383 GT:AD:DP:GQ:PL 0/1:86,95:181:99:2398,0,2084 1 45671599 rs188223265 G A 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.041;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=0.481;SOR=0.808 GT:AD:DP:GQ:PL 0/1:58,55:113:99:1417,0,1332 1 45671966 rs4454584 A G 3309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.708;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.782;SOR=0.704 GT:AD:DP:GQ:PL 0/1:152,124:276:99:3338,0,4021 1 45797505 rs3219489 C G 3099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-1.053;SOR=0.546 GT:AD:DP:GQ:PL 0/1:117,120:237:99:3128,0,2984 1 45810923 rs3893383 G A 2409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.704;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=1.07;SOR=0.693 GT:AD:DP:GQ:PL 0/1:122,94:216:99:2438,0,3151 1 45973928 rs2275276 G A 1890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.062;SOR=0.656 GT:AD:DP:GQ:PL 0/1:90,84:174:99:1919,0,2372 1 46073489 rs2230657 G A 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=1.148;SOR=0.637 GT:AD:DP:GQ:PL 0/1:119,91:210:99:2314,0,3187 1 46078854 rs2230658 A G 625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-1.557;SOR=0.99 GT:AD:DP:GQ:PL 0/1:26,28:54:99:654,0,638 1 46078884 rs2230659 C T 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-1.282;SOR=0.629 GT:AD:DP:GQ:PL 0/1:30,41:71:99:952,0,671 1 46086077 rs3014246 C T 2142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=5.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.105;SOR=0.415 GT:AD:DP:GQ:PL 0/1:94,88:182:99:2171,0,2448 1 46087577 rs3014242 G A 1379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-1.995;SOR=0.539 GT:AD:DP:GQ:PL 0/1:82,64:146:99:1408,0,2157 1 46089225 rs3014240 C G 2334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=2.185;SOR=0.621 GT:AD:DP:GQ:PL 0/1:116,97:213:99:2363,0,3047 1 46094027 rs1250 A G 1479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.152;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.055;SOR=0.604 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1508,0,1350 1 46095272 rs1135812 T C 1013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.711;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.846;SOR=0.869 GT:AD:DP:GQ:PL 0/1:37,45:82:99:1042,0,775 1 46165875 rs5773892 G GA 1102.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.836;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.06;SOR=0.391 GT:AD:DP:GQ:PL 0/1:38,50:91:99:1140,0,669 1 46195375 rs28375469 T C 622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.432;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.058;SOR=0.797 GT:AD:DP:GQ:PL 0/1:36,24:60:99:651,0,893 1 46476587 rs11211247 T G 4038.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=1.224 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4067,384,0 1 46493460 rs1707336 T G 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.372;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=1.476;SOR=0.646 GT:AD:DP:GQ:PL 0/1:80,52:132:99:1234,0,1832 1 46496709 rs925524 A G 2612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=0.627;SOR=0.875 GT:AD:DP:GQ:PL 0/1:90,106:196:99:2641,0,2120 1 46498375 rs1622208 A G 2556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.289;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-1.385;SOR=0.597 GT:AD:DP:GQ:PL 0/1:129,108:237:99:2585,0,2937 1 46499526 rs1052607 A G 2715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.335;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-1.112;SOR=0.869 GT:AD:DP:GQ:PL 0/1:127,118:245:99:2744,0,2922 1 46500251 rs33931638 G A 1829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.195;SOR=0.526 GT:AD:DP:GQ:PL 0/1:96,79:175:99:1858,0,2423 1 46521517 rs785468 G A 1256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=0.551;SOR=0.66 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1285,0,1779 1 46521559 rs785467 A T 1342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-1.152;SOR=0.667 GT:AD:DP:GQ:PL 0/1:68,63:131:99:1371,0,1574 1 46655158 rs6659553 T C 5980.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6009,581,0 1 46660295 rs2292487 T C 1071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.082;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=3.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.185;SOR=1.135 GT:AD:DP:GQ:PL 0/1:60,45:105:99:1100,0,1470 1 46743900 rs1048771 C T 3201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.885;SOR=0.787 GT:AD:DP:GQ:PL 0/1:111,138:249:99:3230,0,2656 1 46746164 rs11542623 C T 1818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.323;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=-0.458;SOR=0.665 GT:AD:DP:GQ:PL 0/1:113,84:197:99:1847,0,2565 1 46774783 rs41292543 A G 1243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.907;SOR=0.655 GT:AD:DP:GQ:PL 0/1:49,56:105:99:1272,0,1102 1 46806480 rs17361749 C T 958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.931;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-2.809;SOR=1.153 GT:AD:DP:GQ:PL 0/1:46,36:82:99:987,0,1180 1 46806550 rs41293277 C T 1661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.757;SOR=0.813 GT:AD:DP:GQ:PL 0/1:73,73:146:99:1690,0,1814 1 46810670 rs17361763 T C 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.517;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-1.773;SOR=0.661 GT:AD:DP:GQ:PL 0/1:76,79:155:99:1923,0,1803 1 46827456 rs9865 A G 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.21;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.998;SOR=0.66 GT:AD:DP:GQ:PL 0/1:57,60:117:99:1468,0,1289 1 46827485 rs1053624 C T 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=2.885;SOR=0.593 GT:AD:DP:GQ:PL 0/1:54,51:105:99:1215,0,1369 1 46871986 rs324419 T C 2549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=0.117;SOR=0.634 GT:AD:DP:GQ:PL 0/1:99,102:201:99:2578,0,2482 1 46877810 rs78529632 C T 1987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.084;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=2.185;SOR=0.869 GT:AD:DP:GQ:PL 0/1:62,79:141:99:2016,0,1351 1 46976717 rs12045245 C T 3791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=1.098;SOR=0.696 GT:AD:DP:GQ:PL 0/1:170,161:331:99:3820,0,4129 1 46976837 rs1886116 C T 5235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.913;ClippingRankSum=0;DB;DP=389;ExcessHet=3.0103;FS=4.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=0.071;SOR=0.735 GT:AD:DP:GQ:PL 0/1:186,201:387:99:5264,0,4485 1 47024239 rs201329348 G A 2022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.51;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.779;SOR=0.788 GT:AD:DP:GQ:PL 0/1:107,87:194:99:2051,0,2926 1 47024308 rs34881418 C T 3183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.076;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.27;SOR=0.739 GT:AD:DP:GQ:PL 0/1:126,133:259:99:3212,0,2882 1 47078637 rs4660947 T C 3420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.897;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=3.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.684;SOR=0.523 GT:AD:DP:GQ:PL 0/1:146,142:288:99:3449,0,3463 1 47080679 rs6671527 G A 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=-1.681;SOR=0.656 GT:AD:DP:GQ:PL 0/1:51,78:129:99:1818,0,1108 1 47133811 rs11211337 T C 7624.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7653,754,0 1 47279175 rs4646487 C T 2113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.45;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=0.578;SOR=0.685 GT:AD:DP:GQ:PL 0/1:56,95:151:99:2142,0,1341 1 47279558 rs4646489 CCCT C 1901.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.137;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.16;QD=15.85;ReadPosRankSum=-1.126;SOR=0.992 GT:AD:DP:GQ:PL 0/1:68,52:120:99:1939,0,2903 1 47395973 rs1126743 G A 3529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=0.42;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.987;QD=11.54;ReadPosRankSum=0.449;SOR=0.662 GT:AD:DP:GQ:PL 0/1:152,154:306:99:3558,0,3772 1 47398496 rs1126742 A G 3185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.984;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=55.89;MQRankSum=-8.612;QD=12.02;ReadPosRankSum=1.563;SOR=0.799 GT:AD:DP:GQ:PL 0/1:148,117:265:99:3214,0,3883 1 47399967 rs28451040 G A 2054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=5.713;MLEAC=1;MLEAF=0.5;MQ=48.33;MQRankSum=-0.516;QD=9.09;ReadPosRankSum=-0.503;SOR=0.415 GT:AD:DP:GQ:PL 0/1:132,94:226:99:2083,0,3480 1 47495822 rs12141009 C T 3891.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.299 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3920,381,0 1 47571862 rs138601503 C G 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.5;MQ=57.83;MQRankSum=-1.892;QD=9.05;ReadPosRankSum=0.741;SOR=0.586 GT:AD:DP:GQ:PL 0/1:106,81:187:99:1720,0,2633 1 47571902 rs4926802 C T 8453.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.35;QD=44.26;SOR=0.768 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,191:191:99:1|1:47571902_C_T:8482,578,0 1 47571905 rs28463559 C T 8453.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.31;QD=44.73;SOR=0.792 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,189:189:99:1|1:47571902_C_T:8482,578,0 1 47571943 rs149137568 CTTT C 3999.73 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.57;QD=46.51;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,86:110:99:4037,323,0 1 47607281 rs12564525 C T 2322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.356;QD=11.5;ReadPosRankSum=-2.384;SOR=0.769 GT:AD:DP:GQ:PL 0/1:97,105:202:99:2351,0,2180 1 47607762 rs2056901 T C 2490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.137;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=3.946;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.537;QD=11.17;ReadPosRankSum=-2.279;SOR=0.995 GT:AD:DP:GQ:PL 0/1:121,102:223:99:2519,0,3069 1 47607785 rs2056900 G A 3063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.189;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=4.757;MLEAC=1;MLEAF=0.5;MQ=57.92;MQRankSum=-0.106;QD=10.71;ReadPosRankSum=-0.957;SOR=0.956 GT:AD:DP:GQ:PL 0/1:159,127:286:99:3092,0,3830 1 47607851 rs2056899 A T 9892.77 PASS AC=2;AF=1;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.76;QD=29.27;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,338:338:99:9921,1014,0 1 47608983 rs113777592 G T 3842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.5;MQ=44.19;MQRankSum=-1.707;QD=13.87;ReadPosRankSum=2.098;SOR=0.734 GT:AD:DP:GQ:PL 0/1:125,152:277:99:3871,0,3061 1 47609489 rs10789501 T C 6511.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=29.33;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6540,665,0 1 47610293 rs968322 C T 4560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0;DB;DP=436;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.76;MQRankSum=-2.381;QD=10.48;ReadPosRankSum=-0.116;SOR=0.7 GT:AD:DP:GQ:PL 0/1:233,202:435:99:4589,0,5707 1 47611598 rs2405599 T C 3154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.701;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.5;MQ=58.72;MQRankSum=-5.133;QD=12.82;ReadPosRankSum=0.091;SOR=0.853 GT:AD:DP:GQ:PL 0/1:116,130:246:99:3183,0,2690 1 47614485 rs72684327 A G 2858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.144;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=58.34;MQRankSum=-5.972;QD=11.67;ReadPosRankSum=0.081;SOR=0.658 GT:AD:DP:GQ:PL 0/1:128,117:245:99:2887,0,3034 1 47685455 rs927462 T C 10128.8 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.57;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,311:311:99:10157,931,0 1 47691568 rs145295250 GCAGA G 5787.73 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=44.52;SOR=2.376 GT:AD:DP:GQ:PL 1/1:0,130:130:99:5825,393,0 1 47717189 rs2758735 A G 4387.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4416,416,0 1 47842431 rs3125648 G A 2081.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2110,219,0 1 47904668 rs71053113 T TCCGCAC 13201.8 PASS AC=2;AF=1;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.12;QD=46.49;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,284:284:99:13230,905,0 1 47904909 rs2405913 G C 7074.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7103,709,0 1 48459907 rs3814006 C T 2850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.698;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.07;SOR=0.552 GT:AD:DP:GQ:PL 0/1:156,116:272:99:2879,0,3942 1 48697733 rs212991 T G 6726.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6755,648,0 1 48764419 rs1056042 C T 1879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.501;SOR=0.882 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1908,0,1897 1 48937691 rs2275309 A T 1812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.643;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=1.168;SOR=0.561 GT:AD:DP:GQ:PL 0/1:106,90:196:99:1841,0,2652 1 49224584 rs1128934 G T 4081.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.39;SOR=1.591 GT:AD:DP:GQ:PL 1/1:0,126:126:99:4110,378,0 1 49511424 rs3934240 A G 2550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.075;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=1.154;SOR=0.567 GT:AD:DP:GQ:PL 0/1:94,103:197:99:2579,0,2226 1 50661411 rs2480683 C T 7602.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7631,792,0 1 50666515 rs2494876 C T 4606.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4635,465,0 1 50884778 rs2746610 G A 8002.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.212;ClippingRankSum=0;DB;DP=382;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.5;ReadPosRankSum=-0.048;SOR=0.846 GT:AD:DP:GQ:PL 1/1:11,291:302:99:8031,406,0 1 52266242 rs8375 G A 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.65;ReadPosRankSum=2.167;SOR=0.931 GT:AD:DP:GQ:PL 0/1:75,48:123:99:969,0,2008 1 52290984 rs11205896 T G 949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-1.058;SOR=0.598 GT:AD:DP:GQ:PL 0/1:39,41:80:99:978,0,895 1 52306063 rs35723519 ATCT A 1499.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.5;MQ=61.03;MQRankSum=2.416;QD=20.83;ReadPosRankSum=0.387;SOR=0.538 GT:AD:DP:GQ:PL 0/1:31,41:72:99:1537,0,1233 1 52402956 rs10888742 G A 2548.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2577,270,0 1 52729425 . TCCC T 82.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.14;ReadPosRankSum=-1.335;SOR=0.465 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,4:20:99:0|1:52729425_TCCC_T:120,0,652 1 52729432 rs3833531 C G 426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.1;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.56;ReadPosRankSum=0.406;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,19:23:99:1|0:52729425_TCCC_T:455,0,111 1 52912122 rs55749039 T TA 891.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.455;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-1.889;SOR=0.76 GT:AD:DP:GQ:PL 0/1:48,45:98:99:929,0,890 1 52991638 rs12123698 C T 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.606;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.805;SOR=0.754 GT:AD:DP:GQ:PL 0/1:145,118:263:99:2668,0,3404 1 53072454 rs1970951 T C 6479.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6508,645,0 1 53250650 rs6588443 G A 4923.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4952,507,0 1 53267474 . G GT 97.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=5.19;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0;QD=1.4;ReadPosRankSum=-0.739;SOR=0.284 GT:AD:DP:GQ:PL 0/1:56,14:79:99:135,0,1142 1 53544578 rs11206088 T C 10060.8 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,320:320:99:10089,960,0 1 53544597 rs1288389 T C 8943.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8972,849,0 1 53553702 rs1288400 A G 4650.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.142 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4679,459,0 1 53554533 rs35707549 A AT 3846.73 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.99;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3884,313,0 1 53684525 rs436887 C G 519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.604;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.59;ReadPosRankSum=-0.134;SOR=0.975 GT:AD:DP:GQ:PL 0/1:65,28:93:99:548,0,1550 1 54065778 rs12723437 C T 3686.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3715,392,0 1 54065831 rs12723875 G T 5185.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.03;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5214,554,0 1 54065924 rs12723911 G A 3799.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3828,366,0 1 54605318 rs3841798 T TGG 1083.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.981;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=15.68;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-1.061;QD=6.26;ReadPosRankSum=-0.614;SOR=1.793 GT:AD:DP:GQ:PL 0/1:133,40:183:99:1121,0,5359 1 54605319 rs36013100 G GC 3353.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.517;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=16.007;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.165;QD=17.74;ReadPosRankSum=1.771;SOR=0.208 GT:AD:DP:GQ:PL 0/1:58,131:189:99:3391,0,1846 1 54606804 rs3766465 C T 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.581;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=0.053;SOR=0.623 GT:AD:DP:GQ:PL 0/1:110,103:213:99:2680,0,2899 1 54607051 rs671103 A G 6076.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.173 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6105,614,0 1 54681920 rs13571 G C 3198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=7.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-1.217;SOR=0.489 GT:AD:DP:GQ:PL 0/1:109,135:244:99:3227,0,2583 1 54683856 rs15921 C G 1347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.785;SOR=0.819 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1376,0,1763 1 54683925 rs6621 G A 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-3.106;SOR=0.519 GT:AD:DP:GQ:PL 0/1:108,101:209:99:2221,0,2532 1 54690954 rs3088379 T C 2614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.166;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.784;SOR=0.642 GT:AD:DP:GQ:PL 0/1:138,106:244:99:2643,0,3240 1 54717380 rs191260519 A C 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=2.593;SOR=0.728 GT:AD:DP:GQ:PL 0/1:108,83:191:99:1808,0,2611 1 55075452 rs1368883 G A 7075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.17;ClippingRankSum=0;DB;DP=550;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=1.265;SOR=0.669 GT:AD:DP:GQ:PL 0/1:249,300:549:99:7104,0,6159 1 55119144 rs11206407 A G 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=-0.728;SOR=0.657 GT:AD:DP:GQ:PL 0/1:82,101:183:99:2552,0,2099 1 55119289 rs9332417 G C 2255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.279;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=4.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=0.025;SOR=0.682 GT:AD:DP:GQ:PL 0/1:81,83:164:99:2284,0,2199 1 55119546 rs1655518 A G 6249.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6278,598,0 1 55130931 rs2078273 C T 2485.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2514,266,0 1 55136529 rs480963 T C 4019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.338;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=1.148;SOR=0.691 GT:AD:DP:GQ:PL 0/1:126,163:289:99:4048,0,2760 1 55139741 rs570218 A G 3883.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3912,404,0 1 55167773 rs646356 T A 1714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.275;SOR=0.631 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1743,0,1817 1 55182300 rs1147990 T A 1425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.04;SOR=0.426 GT:AD:DP:GQ:PL 0/1:56,60:116:99:1454,0,1396 1 55197149 rs3815226 T C 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.9;ReadPosRankSum=1.429;SOR=0.854 GT:AD:DP:GQ:PL 0/1:44,66:110:99:1777,0,1065 1 55247097 rs2286203 G A 3337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=7.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-1.862;SOR=0.916 GT:AD:DP:GQ:PL 0/1:120,138:258:99:3366,0,3049 1 55248074 rs12144325 A G 2343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.517;SOR=0.831 GT:AD:DP:GQ:PL 0/1:91,108:199:99:2372,0,1955 1 55251689 rs586462 T C 5344.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5373,516,0 1 55266797 rs671108 G C 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.722;SOR=0.663 GT:AD:DP:GQ:PL 0/1:85,73:158:99:1901,0,2299 1 55277599 rs600499 T C 10912.8 PASS AC=2;AF=1;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,350:350:99:10941,1050,0 1 55307501 rs41297871 A G 2032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=1.632;SOR=0.554 GT:AD:DP:GQ:PL 0/1:90,87:177:99:2061,0,2136 1 55319902 rs718265 A G 1026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=0.493;SOR=0.683 GT:AD:DP:GQ:PL 0/1:81,48:129:99:1055,0,1924 1 55330966 rs611057 T C 5559.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5588,537,0 1 55457710 rs2500326 G A 2723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.572;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-0.112;SOR=0.892 GT:AD:DP:GQ:PL 0/1:171,122:293:99:2752,0,4019 1 55505552 rs113330492 A ACTG 4388.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0;DB;DP=392;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.895;QD=12.58;ReadPosRankSum=-0.425;SOR=0.641 GT:AD:DP:GQ:PL 0/1:166,183:353:99:4426,0,6428 1 55505668 rs11583680 C T 3806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.14;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.009;QD=11.79;ReadPosRankSum=-1.026;SOR=0.706 GT:AD:DP:GQ:PL 0/1:162,161:323:99:3835,0,4142 1 55505732 rs2495482 A G 7765.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7794,772,0 1 55518316 rs2483205 C T 2774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=0.485;SOR=0.685 GT:AD:DP:GQ:PL 0/1:93,105:198:99:2803,0,2492 1 55518467 rs2495477 A G 2992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.7;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=0.951;SOR=0.839 GT:AD:DP:GQ:PL 0/1:117,109:226:99:3021,0,2806 1 55523033 rs509504 A G 7460.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=3.421;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.26;ReadPosRankSum=2.198;SOR=0.535 GT:AD:DP:GQ:PL 1/1:1,254:255:99:7489,727,0 1 55524197 rs540796 A G 9247.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.194 GT:AD:DP:GQ:PL 1/1:0,305:305:99:9276,915,0 1 55524237 rs562556 G A 10136.8 PASS AC=2;AF=1;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,355:355:99:10165,1063,0 1 55524339 . CGTGTGTGTGTGTGTGT C,CGT 8507.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0;DP=322;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=41.91;ReadPosRankSum=1.458;SOR=1.032 GT:AD:DP:GQ:PL 1/2:2,49,152:225:99:8545,4749,4418,1572,0,1046 1 55529187 rs505151 G A 10762.8 PASS AC=2;AF=1;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,352:352:99:10791,1056,0 1 55541174 rs487230 A G 2912.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.216 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2941,276,0 1 55555285 rs548852 G A 1843.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1872,195,0 1 55571953 rs41301092 T C 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-0.918;SOR=0.671 GT:AD:DP:GQ:PL 0/1:27,37:64:99:885,0,643 1 55638075 rs1165222 G A 4613.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4642,484,0 1 57111169 rs61772962 C G 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=10.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.15;SOR=0.733 GT:AD:DP:GQ:PL 0/1:72,88:160:99:2128,0,1748 1 57140070 rs55717918 A G 1041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=1.669;SOR=0.738 GT:AD:DP:GQ:PL 0/1:64,47:111:99:1070,0,1550 1 57221553 rs1774808 G T 1515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.19;ReadPosRankSum=-0.855;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,41:79:99:0|1:57221553_G_T:1544,0,1748 1 57221554 rs1738401 A G 1515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.19;ReadPosRankSum=-1.054;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,41:79:99:0|1:57221553_G_T:1544,0,1748 1 57258485 rs1935553 A G 1336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.935;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-2.851;SOR=0.952 GT:AD:DP:GQ:PL 0/1:59,51:110:99:1365,0,1367 1 57340727 rs652785 C A 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=-0.965;SOR=0.739 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1194,0,1835 1 57395251 rs605648 T C 2183.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2212,207,0 1 57422484 rs1013579 C T 3987.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4016,420,0 1 59127086 rs7523134 G A 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.584;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-1.89;SOR=0.99 GT:AD:DP:GQ:PL 0/1:17,20:37:99:522,0,403 1 59127193 rs7525365 C T 383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.526;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=4.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=1.718;SOR=1.585 GT:AD:DP:GQ:PL 0/1:19,17:36:99:412,0,415 1 59131311 rs232790 G T 1575.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1604,156,0 1 59142713 rs579110 T C 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-1.766;SOR=1.13 GT:AD:DP:GQ:PL 0/1:45,45:90:99:1069,0,1095 1 59147926 rs12139511 T C 2039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.007;SOR=0.649 GT:AD:DP:GQ:PL 0/1:81,83:164:99:2068,0,2073 1 59150941 rs2206764 G A 1945.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1974,195,0 1 59160885 rs2064374 A G 400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.947;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.383;SOR=0.793 GT:AD:DP:GQ:PL 0/1:24,18:42:99:429,0,576 1 59787350 rs835409 T G 5921.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5950,585,0 1 59844471 rs835435 G A 2851.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2880,300,0 1 60019853 rs62623594 C T 1629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.727;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=0.859;SOR=0.637 GT:AD:DP:GQ:PL 0/1:94,77:171:99:1658,0,2070 1 60503762 rs17560663 T C 557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.187;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=2.121;SOR=0.8 GT:AD:DP:GQ:PL 0/1:44,24:68:99:586,0,1011 1 60505578 rs680390 A G 4329.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.461 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4358,416,0 1 61869783 rs2236059 G A 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.171;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.456;SOR=1.114 GT:AD:DP:GQ:PL 0/1:86,74:160:99:1884,0,2109 1 61872215 rs58081092 GC G 249.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.94;ReadPosRankSum=-0.044;SOR=0.293 GT:AD:DP:GQ:PL 0/1:17,19:38:99:287,0,353 1 62149237 rs12134205 C G 125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.66;ReadPosRankSum=-0.38;SOR=0.818 GT:AD:DP:GQ:PL 0/1:19,8:27:99:154,0,476 1 62232031 rs1286835 C T 3500.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=26.72;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3529,392,0 1 62257036 rs1286823 A C 416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.892;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=-0.143;SOR=0.889 GT:AD:DP:GQ:PL 0/1:31,19:50:99:445,0,773 1 62330080 rs2799627 T G 3808.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3837,348,0 1 62380270 rs1134766 C T 913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=-0.244;SOR=0.815 GT:AD:DP:GQ:PL 0/1:28,38:66:99:942,0,593 1 62380298 rs1056513 G A 2281.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2310,230,0 1 62393394 rs2251182 A G 2477.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2506,264,0 1 62456014 rs1134767 G A 1668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.35;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-1.251;SOR=0.817 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1697,0,1876 1 62483599 rs34726576 G A 898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.113;SOR=1.075 GT:AD:DP:GQ:PL 0/1:38,41:79:99:927,0,960 1 62483623 rs41313250 A G 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.227;SOR=1.089 GT:AD:DP:GQ:PL 0/1:33,30:63:99:745,0,861 1 62516683 rs2498982 G C 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.06;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.5;ReadPosRankSum=-2.026;SOR=0.702 GT:AD:DP:GQ:PL 0/1:81,59:140:99:1218,0,1832 1 62579823 rs1475563 G A 5757.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5786,596,0 1 62579907 rs7418709 C T 4297.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.313 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4326,422,0 1 62672546 rs2457829 G A 1799.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.651 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1828,168,0 1 62675619 rs4625314 C T 5293.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=1.172 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5322,509,0 1 62675892 rs2481694 A G 4193.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4222,389,0 1 62713224 rs2941679 C G 5182.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5211,540,0 1 62728784 rs2666472 A G 3473.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=1.508 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3502,338,0 1 62728838 rs2258470 T C 7501.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.36;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,173:173:99:1|1:62728838_T_C:7530,527,0 1 62728861 rs2260581 T C 7496.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.33;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,173:173:99:1|1:62728838_T_C:7525,529,0 1 62728918 rs2262110 G A 4809.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4838,492,0 1 62939634 rs1168007 C T 2526.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2555,266,0 1 63044645 rs199915737 CA C 255.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.817;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.06;ReadPosRankSum=0.726;SOR=0.951 GT:AD:DP:GQ:PL 0/1:44,19:80:99:293,0,934 1 63270823 . CT C 74.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.308;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.49;ReadPosRankSum=0.379;SOR=0.914 GT:AD:DP:GQ:PL 0/1:40,10:58:99:112,0,901 1 63881552 rs4630153 C T 540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.32;ReadPosRankSum=1.074;SOR=0.435 GT:AD:DP:GQ:PL 0/1:38,27:65:99:569,0,971 1 63912546 rs12760364 G T 461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.291;QD=9.82;ReadPosRankSum=0.283;SOR=0.95 GT:AD:DP:GQ:PL 0/1:21,26:48:99:490,0,433 1 63997633 rs9804078 A T 882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.25;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-1.285;SOR=0.634 GT:AD:DP:GQ:PL 0/1:43,35:78:99:911,0,1092 1 63999826 rs6693255 C T 1870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=-1.388;SOR=0.735 GT:AD:DP:GQ:PL 0/1:61,81:142:99:1899,0,1475 1 63999868 rs6657480 T C 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=0.344;SOR=0.687 GT:AD:DP:GQ:PL 0/1:62,82:144:99:1893,0,1317 1 63999891 rs6657559 T C 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.975;SOR=0.878 GT:AD:DP:GQ:PL 0/1:51,71:122:99:1735,0,1145 1 64021096 rs2273367 G A 1688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.121;SOR=0.779 GT:AD:DP:GQ:PL 0/1:64,71:135:99:1717,0,1636 1 64038107 rs6588050 G T 356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.49;ReadPosRankSum=-0.121;SOR=0.35 GT:AD:DP:GQ:PL 0/1:26,16:42:99:385,0,693 1 64097432 rs1126728 C T 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.177;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=0.912;SOR=0.743 GT:AD:DP:GQ:PL 0/1:56,39:95:99:885,0,1291 1 64113956 rs10889435 A T 1857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.783;SOR=1.032 GT:AD:DP:GQ:PL 0/1:75,79:154:99:1886,0,1731 1 64114301 rs11208257 T C 1322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.356;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=10.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-0.674;SOR=0.369 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1351,0,1342 1 64117537 rs2269238 G T 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.888;SOR=1.073 GT:AD:DP:GQ:PL 0/1:54,55:109:99:1333,0,1312 1 64124751 rs11208262 C T 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=-0.646;SOR=0.543 GT:AD:DP:GQ:PL 0/1:83,59:142:99:1264,0,1860 1 64515379 rs1772626 C T 3599.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3628,351,0 1 64608329 rs2762833 G T 5302.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5331,513,0 1 64624842 rs6668545 A G 1696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-0.871;SOR=0.822 GT:AD:DP:GQ:PL 0/1:57,71:128:99:1725,0,1393 1 64726384 rs11208393 C T 656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-1.256;SOR=1.143 GT:AD:DP:GQ:PL 0/1:26,30:56:99:685,0,683 1 65016349 rs2164571 A T 1908.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1937,201,0 1 65113568 rs6588100 T C 5117.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5146,519,0 1 65141676 . TTAA T 527.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.78;ReadPosRankSum=-0.301;SOR=0.818 GT:AD:DP:GQ:PL 0/1:4,15:19:83:565,0,83 1 65614154 rs17853973 T A 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=12.583;MLEAC=1;MLEAF=0.5;MQ=51.63;MQRankSum=2.908;QD=10.1;ReadPosRankSum=0.807;SOR=1.244 GT:AD:DP:GQ:PL 0/1:105,82:187:99:1917,0,2611 1 65684425 rs11208611 C T 1348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.355;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.175;QD=9.63;ReadPosRankSum=-0.559;SOR=1.119 GT:AD:DP:GQ:PL 0/1:82,58:140:99:1377,0,2245 1 65830298 rs111346712 T TG 105.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.79;ReadPosRankSum=-0.509;SOR=0.43 GT:AD:DP:GQ:PL 0/1:114,20:134:99:143,0,2504 1 65830299 rs2296479 T G 1886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.089;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=0.783;SOR=0.645 GT:AD:DP:GQ:PL 0/1:39,100:139:99:1915,0,590 1 65858145 rs4325172 G A 4522.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.36 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4551,454,0 1 65860687 rs4582839 A C 5305.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5334,554,0 1 65886398 rs3790435 T C 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.433;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=11.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.148;SOR=0.215 GT:AD:DP:GQ:PL 0/1:64,51:115:99:1407,0,1643 1 66036441 rs1137100 A G 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.049;SOR=0.467 GT:AD:DP:GQ:PL 0/1:87,71:158:99:1762,0,2409 1 66036501 rs2186248 G T 3127.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=1.562 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3156,294,0 1 66058513 rs1137101 A G 2282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.27;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-3.021;SOR=0.857 GT:AD:DP:GQ:PL 0/1:110,96:206:99:2311,0,2761 1 66096093 . T TA 42.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.841;ClippingRankSum=-0;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.97;MQRankSum=-1.691;QD=3.56;ReadPosRankSum=-1.371;SOR=0.883 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,5:12:80:0|1:66096093_T_TA:80,0,107 1 66096106 rs10889571 G A 415.77 PASS AC=2;AF=1;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.3;QD=31.98;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,13:13:39:1|1:66096093_T_TA:444,39,0 1 66831370 rs783036 G A 1589.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1618,156,0 1 66834595 rs114211692 G A 1279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.17;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=1.562;SOR=0.696 GT:AD:DP:GQ:PL 0/1:55,55:110:99:1308,0,1432 1 67109277 rs17490057 G C 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.67;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=1.071;SOR=0.56 GT:AD:DP:GQ:PL 0/1:38,49:87:99:1097,0,973 1 67266756 rs549148 T A 3500.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3529,327,0 1 67279881 rs74609208 C A 295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.373;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.48;ReadPosRankSum=-1.528;SOR=1.185 GT:AD:DP:GQ:PL 0/1:37,17:54:99:324,0,884 1 67288045 rs482082 C T 1212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.979;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-1.53;SOR=0.633 GT:AD:DP:GQ:PL 0/1:55,51:106:99:1241,0,1296 1 67327894 rs34182923 A G 1368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.641;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.646;SOR=0.761 GT:AD:DP:GQ:PL 0/1:49,55:104:99:1397,0,1146 1 67390416 rs3008858 G C 6450.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6479,621,0 1 67390468 rs1886686 C G 6987.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,220:220:99:7016,660,0 1 67558739 rs6588237 C T 1948.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1977,183,0 1 67560956 rs11208997 C T 1848.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1877,189,0 1 67561056 rs61782288 C T 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.728;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=-1.051;SOR=0.829 GT:AD:DP:GQ:PL 0/1:43,33:76:99:711,0,884 1 67591611 . GAA G,GA 831.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.29;MQRankSum=0.572;QD=17.33;ReadPosRankSum=0.304;SOR=0.558 GT:AD:DP:GQ:PL 1/2:7,15,26:57:99:869,349,478,264,0,256 1 67633812 rs1884444 G T 2031.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2060,218,0 1 67685387 rs7530511 T C 3123.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3152,314,0 1 67721500 rs368210076 G A 191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.471;SOR=0.653 GT:AD:DP:GQ:PL 0/1:6,11:17:99:220,0,121 1 67795319 rs1495963 T C 1697.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1726,168,0 1 67852335 rs2228420 G A 647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.87;ReadPosRankSum=-0.696;SOR=0.59 GT:AD:DP:GQ:PL 0/1:40,33:73:99:676,0,836 1 67861520 rs2229546 C A 1120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.004;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=1.009;SOR=1.241 GT:AD:DP:GQ:PL 0/1:49,45:94:99:1149,0,1136 1 68173264 rs2295942 C T 479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=1.023;SOR=0.484 GT:AD:DP:GQ:PL 0/1:28,24:52:99:508,0,718 1 68603586 rs983034 C T 2073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.425;SOR=0.553 GT:AD:DP:GQ:PL 0/1:103,95:198:99:2102,0,2451 1 68620762 rs3762371 G A 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=12.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-1.504;SOR=1.721 GT:AD:DP:GQ:PL 0/1:66,50:116:99:1228,0,1837 1 68624878 rs3748705 C T 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.07;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=3.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.244;SOR=0.705 GT:AD:DP:GQ:PL 0/1:99,83:182:99:1849,0,2330 1 70505179 . G A 2948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DP=216;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.376;SOR=0.629 GT:AD:DP:GQ:PL 0/1:93,122:215:99:2977,0,2131 1 70742532 . CA C 35.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.051;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.52;ReadPosRankSum=1.035;SOR=0.658 GT:AD:DP:GQ:PL 0/1:58,11:80:73:73,0,1389 1 70820008 rs61782675 C T 3661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=9.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=1.673;SOR=1.142 GT:AD:DP:GQ:PL 0/1:135,142:277:99:3690,0,3546 1 70820880 rs55863806 G A 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=1.331;SOR=0.735 GT:AD:DP:GQ:PL 0/1:91,75:166:99:1799,0,2378 1 70904523 rs112004441 T TTGTG,TTGTGTG 6487.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.12;QD=43.54;SOR=0.733 GT:AD:DP:GQ:PL 1/2:0,29,120:151:99:6525,3741,3290,912,0,461 1 71536574 rs11583800 G C 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.87;ReadPosRankSum=-0.14;SOR=0.801 GT:AD:DP:GQ:PL 0/1:87,57:144:99:1306,0,2195 1 72058552 rs1413368 G A 3123.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3152,312,0 1 74575182 rs1340472 C T 967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=1.931;SOR=0.784 GT:AD:DP:GQ:PL 0/1:38,44:82:99:996,0,907 1 74665493 rs792310 G A 1949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.589;SOR=0.566 GT:AD:DP:GQ:PL 0/1:86,82:168:99:1978,0,2208 1 74671519 rs571848 A G 188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.522;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=5.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.85;ReadPosRankSum=0.394;SOR=0.223 GT:AD:DP:GQ:PL 0/1:37,12:49:99:217,0,970 1 75036783 rs9326115 T C 5479.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5508,543,0 1 75036812 rs9326116 C T 5865.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5894,575,0 1 75037845 rs12723334 A G 2647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.016;SOR=0.676 GT:AD:DP:GQ:PL 0/1:110,105:215:99:2676,0,2682 1 75038228 rs11580409 A C 2637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.367;SOR=0.83 GT:AD:DP:GQ:PL 0/1:102,107:209:99:2666,0,2687 1 75038964 rs41289214 C T 3288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=2.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.375;SOR=0.856 GT:AD:DP:GQ:PL 0/1:144,134:278:99:3317,0,3575 1 75042626 . TA T 36.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.48;ReadPosRankSum=0.291;SOR=1.022 GT:AD:DP:GQ:PL 0/1:64,13:88:74:74,0,1522 1 75065441 rs696698 C T 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.578;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.342;SOR=0.772 GT:AD:DP:GQ:PL 0/1:116,92:208:99:2097,0,2739 1 75086412 rs41289218 G C 1026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.937;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.243;SOR=0.706 GT:AD:DP:GQ:PL 0/1:58,45:103:99:1055,0,1354 1 75602384 rs71500673 G T 1211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.45;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=0.779;SOR=0.647 GT:AD:DP:GQ:PL 0/1:73,59:132:99:1240,0,1763 1 75614380 rs35220110 CT C 1002.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.185;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=0.719;QD=15.43;ReadPosRankSum=-0.252;SOR=0.405 GT:AD:DP:GQ:PL 0/1:14,51:73:99:1040,0,168 1 75622616 rs941032 C T 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.364;SOR=0.553 GT:AD:DP:GQ:PL 0/1:107,98:205:99:2258,0,2607 1 75672376 rs1948874 A G 946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.03;ReadPosRankSum=-1.29;SOR=0.724 GT:AD:DP:GQ:PL 0/1:25,38:63:99:975,0,571 1 75681511 rs595009 T C 1982.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2011,201,0 1 75708568 rs181173029 T G 1849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.706;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.377;SOR=0.548 GT:AD:DP:GQ:PL 0/1:75,77:152:99:1878,0,1596 1 75716925 rs588098 C T 3050.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3079,338,0 1 76194054 rs7524467 C G 521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.198;SOR=0.488 GT:AD:DP:GQ:PL 0/1:25,26:51:99:550,0,532 1 76198436 rs2275378 T C 730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=9.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=0.132;SOR=0.654 GT:AD:DP:GQ:PL 0/1:46,34:80:99:759,0,1085 1 76227022 rs1061337 A G 1178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.228;SOR=0.686 GT:AD:DP:GQ:PL 0/1:49,51:100:99:1207,0,1128 1 76257892 rs12703 A T 3171.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3200,327,0 1 76272654 rs5745328 A T 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.363;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.244;SOR=0.779 GT:AD:DP:GQ:PL 0/1:52,43:95:99:1108,0,1309 1 76313874 rs2047435 C T 619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=-0.144;SOR=0.892 GT:AD:DP:GQ:PL 0/1:18,26:44:99:648,0,399 1 76344011 rs1493367 C A 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.055;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.165;SOR=1.113 GT:AD:DP:GQ:PL 0/1:45,34:79:99:819,0,1065 1 76344711 rs5745449 A T 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.57;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=1.039;SOR=0.885 GT:AD:DP:GQ:PL 0/1:41,43:84:99:966,0,877 1 76346920 rs5745466 C CAT 2787.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.96;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2825,190,0 1 76378361 rs5020911 T A 678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.207;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.425;SOR=0.544 GT:AD:DP:GQ:PL 0/1:31,25:57:99:707,0,700 1 76378362 rs2881857 T A 547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=1.38;SOR=0.856 GT:AD:DP:GQ:PL 0/1:37,31:68:99:576,0,820 1 76378502 rs5745549 G A 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.71;ReadPosRankSum=0.284;SOR=0.718 GT:AD:DP:GQ:PL 0/1:57,36:93:99:745,0,1394 1 77627096 rs839825 G A 1467.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1496,156,0 1 77634948 rs1779199 G A 1951.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1980,204,0 1 77759578 rs2815311 A G 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.09;SOR=0.686 GT:AD:DP:GQ:PL 0/1:65,85:150:99:1897,0,1432 1 77763542 rs1167206 G A 2388.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2417,222,0 1 77883412 rs1532507 C T 251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=1.588;SOR=0.784 GT:AD:DP:GQ:PL 0/1:17,13:30:99:280,0,452 1 78024284 rs6675743 T C 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=1.186;SOR=0.409 GT:AD:DP:GQ:PL 0/1:24,24:48:99:566,0,592 1 78024345 rs79671213 C CTAT 970.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=3.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=-0.588;SOR=0.476 GT:AD:DP:GQ:PL 0/1:40,27:67:99:1008,0,1701 1 78034156 . CAAAA C 146.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.404;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=7.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=0.039;SOR=1.231 GT:AD:DP:GQ:PL 0/1:8,7:20:99:184,0,442 1 78178976 rs6603958 T A 673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=1.694;SOR=0.458 GT:AD:DP:GQ:PL 0/1:29,35:64:99:702,0,649 1 78184325 rs12142671 A G 944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.466;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=-0.272;SOR=0.768 GT:AD:DP:GQ:PL 0/1:25,39:64:99:973,0,469 1 78201745 rs2296227 G T 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.854;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.346;SOR=0.902 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1032,0,1257 1 78432717 rs201828387 A G 365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=4.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=0.353;SOR=0.442 GT:AD:DP:GQ:PL 0/1:25,19:44:99:394,0,633 1 79128570 . G GT 2505.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0;DP=159;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.76;ReadPosRankSum=-0.594;SOR=0.854 GT:AD:DP:GQ:PL 0/1:85,74:159:99:2543,0,2939 1 79356910 rs143948092 TA T 494.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.077;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.5;MQ=60.53;MQRankSum=1.206;QD=12.37;ReadPosRankSum=-1.948;SOR=1.189 GT:AD:DP:GQ:PL 0/1:16,24:40:99:532,0,358 1 79357360 rs2275902 G C 1407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.022;SOR=0.784 GT:AD:DP:GQ:PL 0/1:55,58:113:99:1436,0,1341 1 79358827 rs1968956 G T 928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.629;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.11;QD=9.88;ReadPosRankSum=-0.285;SOR=0.446 GT:AD:DP:GQ:PL 0/1:51,43:94:99:957,0,1126 1 79383300 rs5775467 CA C 330.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=2.123;SOR=0.33 GT:AD:DP:GQ:PL 0/1:13,12:25:99:368,0,404 1 79392756 rs12754818 C A 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.054;SOR=1.085 GT:AD:DP:GQ:PL 0/1:28,29:57:99:761,0,841 1 79411968 rs41313381 C A 1229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.236;SOR=0.957 GT:AD:DP:GQ:PL 0/1:69,57:126:99:1258,0,1545 1 82421596 rs11163397 C T 3208.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3237,315,0 1 84864256 rs3738573 G C 4805.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4834,470,0 1 84867610 rs3754274 G A 2917.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.384 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2946,295,0 1 84880380 rs3768250 T C 6366.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6395,635,0 1 84944989 rs2292191 A G 4520.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.29;SOR=1.785 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4549,420,0 1 85113203 rs2994949 T C 4338.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4367,461,0 1 85113229 rs1057746 A G 4516.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4545,473,0 1 85488030 rs2028304 G A 3064.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3093,311,0 1 85573705 rs11427716 A AC 1557.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=1.553;QD=18.33;ReadPosRankSum=-0.989;SOR=0.73 GT:AD:DP:GQ:PL 0/1:37,48:85:99:1595,0,1068 1 85575838 rs376334573 TA T 269.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=5.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.55;ReadPosRankSum=0.428;SOR=0.951 GT:AD:DP:GQ:PL 0/1:56,20:94:99:307,0,1232 1 85589939 rs11356964 GT G 5706.73 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=37.06;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5744,464,0 1 85598527 rs36118758 TC T 5340.73 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.42;QD=30.17;SOR=1.442 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5378,532,0 1 85648620 rs817443 C T 5600.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5629,567,0 1 85666156 rs12121540 T G 8666.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8695,840,0 1 85724328 rs4949926 C T 3949.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3978,416,0 1 85787118 rs3087894 G C 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.611;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.08;SOR=0.926 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,40:82:99:0|1:85787114_A_T:1002,0,900 1 86167957 rs1764298 C T 1172.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1201,120,0 1 86173298 rs1539444 C T 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.428;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.747;SOR=0.68 GT:AD:DP:GQ:PL 0/1:44,55:99:99:1361,0,1252 1 86252025 rs12746325 A G 2450.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.12;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2479,222,0 1 86375654 rs1502657 C G 2752.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2781,279,0 1 86487981 rs516213 G A 2623.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.68;QD=27.62;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2652,284,0 1 86487992 rs5775882 A AACAG 2883.73 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.79;QD=43.04;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2921,201,0 1 86488232 rs641712 G A 1057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.607;SOR=0.526 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1086,0,1019 1 86557967 rs11161732 G A 638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=5.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-1.445;SOR=0.328 GT:AD:DP:GQ:PL 0/1:22,29:51:99:667,0,525 1 86590509 . T TA 144.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.16;ReadPosRankSum=-0.798;SOR=0.913 GT:AD:DP:GQ:PL 0/1:53,14:78:99:182,0,1067 1 86590915 rs2174767 G A 5611.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5640,540,0 1 86591837 rs11161747 G A 3963.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3992,408,0 1 86818572 rs272496 T C 1629.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1658,161,0 1 86820267 rs1182098 C T 2328.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2357,250,0 1 86838158 rs421105 C T 1398.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.43;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1427,153,0 1 86847955 rs272516 G A 256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.282;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.94;ReadPosRankSum=-1.746;SOR=1.093 GT:AD:DP:GQ:PL 0/1:24,13:37:99:285,0,527 1 86852621 rs2390096 A G 867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.343;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.454;SOR=0.387 GT:AD:DP:GQ:PL 0/1:52,36:88:99:896,0,1170 1 86891005 rs1158506 C A 466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.348;SOR=0.434 GT:AD:DP:GQ:PL 0/1:26,21:47:99:495,0,751 1 86891179 rs2210641 T C 791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.992;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-0.217;SOR=0.525 GT:AD:DP:GQ:PL 0/1:49,35:84:99:820,0,1187 1 86896541 rs3737672 G A 984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=1.14;SOR=0.659 GT:AD:DP:GQ:PL 0/1:40,44:84:99:1013,0,931 1 86913265 rs2275001 C T 1480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=-0.608;SOR=0.849 GT:AD:DP:GQ:PL 0/1:86,66:152:99:1509,0,2128 1 86920904 rs2390057 A G 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.548;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.733;SOR=0.651 GT:AD:DP:GQ:PL 0/1:70,66:136:99:1726,0,1674 1 86939130 rs2145412 C T 2055.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2084,211,0 1 86947975 rs1321694 A T 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-0.564;SOR=0.606 GT:AD:DP:GQ:PL 0/1:60,65:125:99:1468,0,1298 1 86952324 rs2734705 A G 5593.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5622,558,0 1 86959173 rs2791494 T C 3316.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3345,347,0 1 86961291 rs41286590 C G 1753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.476;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.29;SOR=0.764 GT:AD:DP:GQ:PL 0/1:81,79:160:99:1782,0,1804 1 87036746 rs772599 C A 952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.087;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=-0.936;SOR=0.848 GT:AD:DP:GQ:PL 0/1:59,44:103:99:981,0,1423 1 87036946 rs2231595 C T 1428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.793;SOR=0.695 GT:AD:DP:GQ:PL 0/1:58,65:123:99:1457,0,1297 1 87045896 rs4001061 TCCTACA T 2234.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=2.822;QD=23.52;ReadPosRankSum=0.27;SOR=0.795 GT:AD:DP:GQ:PL 0/1:35,60:95:99:2272,0,2488 1 87549858 rs2798675 A G 1578.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1607,147,0 1 87570398 rs1621247 G A 1450.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1479,141,0 1 89225976 rs430600 T C 736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.292;SOR=0.763 GT:AD:DP:GQ:PL 0/1:24,33:57:99:765,0,486 1 89236029 rs7541301 T A 504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.294;SOR=0.569 GT:AD:DP:GQ:PL 0/1:25,23:48:99:533,0,568 1 89250481 rs201679232 ATCT A 2184.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.01;ReadPosRankSum=-0.056;SOR=0.761 GT:AD:DP:GQ:PL 0/1:29,55:84:99:2222,0,1313 1 89271574 rs786906 T C 502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.931;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.109;SOR=0.45 GT:AD:DP:GQ:PL 0/1:33,20:53:99:531,0,862 1 89322982 rs2794318 G A 3434.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3463,344,0 1 89474818 rs17433780 A G 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.933;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.11;ReadPosRankSum=-0.38;SOR=0.56 GT:AD:DP:GQ:PL 0/1:57,41:98:99:823,0,1479 1 89475135 rs10493821 C T 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.072;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-1.495;QD=9.19;ReadPosRankSum=0.509;SOR=0.659 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1278,0,1794 1 89478854 rs4656076 C G 3387.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.241 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3416,333,0 1 89479063 rs4656077 G A 1536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.841;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=0.089;SOR=0.616 GT:AD:DP:GQ:PL 0/1:65,62:127:99:1565,0,1588 1 89479074 rs4656078 C T 1495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.597;SOR=0.542 GT:AD:DP:GQ:PL 0/1:61,62:123:99:1524,0,1442 1 89479758 rs3795543 T C 3411.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3440,347,0 1 89520574 rs10922554 C A 2090.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=31.21;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2119,201,0 1 89521841 rs1048443 G C 2599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.81;MQRankSum=0.329;QD=11.45;ReadPosRankSum=-2.919;SOR=0.687 GT:AD:DP:GQ:PL 0/1:117,110:227:99:2628,0,2873 1 89522646 rs1048425 G C 7483.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.72;QD=30.8;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7512,728,0 1 89523927 rs60070945 C T 657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=-1.122;SOR=1.195 GT:AD:DP:GQ:PL 0/1:53,29:82:99:686,0,1466 1 89579941 rs2230338 T C 2490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=6.548;MLEAC=1;MLEAF=0.5;MQ=59.51;MQRankSum=1.158;QD=10.88;ReadPosRankSum=0.19;SOR=1.103 GT:AD:DP:GQ:PL 0/1:124,105:229:99:2519,0,3157 1 89582690 rs1803632 G C 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.594;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-1.219;SOR=0.698 GT:AD:DP:GQ:PL 0/1:55,46:101:99:1103,0,1358 1 89618472 rs10710842 GA G 630.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.162;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=1.328;QD=10.34;ReadPosRankSum=0.503;SOR=0.706 GT:AD:DP:GQ:PL 0/1:25,36:70:99:668,0,436 1 89637578 rs676913 G A 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.26;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.25;SOR=0.902 GT:AD:DP:GQ:PL 0/1:59,64:123:99:1493,0,1449 1 89652071 rs561042 T C 1953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.5;MQ=57.12;MQRankSum=-4.881;QD=19.34;ReadPosRankSum=-1.577;SOR=0.9 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,51:101:99:0|1:89652071_T_C:1982,0,12113 1 89652072 rs561037 C T 1995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.5;MQ=57.21;MQRankSum=-5.01;QD=19.19;ReadPosRankSum=-0.51;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,51:104:99:0|1:89652071_T_C:2024,0,12110 1 89652078 rs608339 A T 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.5;MQ=57.26;MQRankSum=-5.095;QD=18.38;ReadPosRankSum=0.546;SOR=0.95 GT:AD:DP:GQ:PGT:PID:PL 0/1:55,51:106:99:0|1:89652071_T_C:1976,0,12814 1 89652087 rs1142890 C T 2136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.5;MQ=57.34;MQRankSum=-5.516;QD=19.6;ReadPosRankSum=1.622;SOR=0.547 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,48:109:99:0|1:89652071_T_C:2165,0,13875 1 89652088 rs1142889 C G 2097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=57.36;MQRankSum=-5.455;QD=19.07;ReadPosRankSum=1.531;SOR=0.58 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,49:110:99:0|1:89652071_T_C:2126,0,13772 1 89652090 rs1142888 T G 1878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.663;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.31;MQRankSum=-5.475;QD=17.4;ReadPosRankSum=1.831;SOR=0.645 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,48:108:99:0|1:89652071_T_C:1907,0,14035 1 89652094 rs1142887 G A 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.279;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.31;MQRankSum=-5.475;QD=17.45;ReadPosRankSum=1.92;SOR=0.709 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,48:108:99:0|1:89652071_T_C:1913,0,13644 1 89652097 rs1142886 C T 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.589;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=57.23;MQRankSum=-5.25;QD=17.95;ReadPosRankSum=0.829;SOR=0.669 GT:AD:DP:GQ:PGT:PID:PL 0/1:56,49:105:99:0|1:89652071_T_C:1913,0,13141 1 89652102 rs655260 A T 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.668;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=57.29;MQRankSum=-5.333;QD=17.28;ReadPosRankSum=0.39;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,49:107:99:0|1:89652071_T_C:1877,0,12545 1 89845926 rs11361992 GT G 2212.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.797;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;MQRankSum=0.306;QD=24.32;ReadPosRankSum=0.095;SOR=1.408 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2250,216,0 1 89849201 rs928652 C G 2131.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2160,207,0 1 89849742 rs959460 A T 3902.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3931,389,0 1 90048248 rs12130207 C T 3364.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=1.544 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3393,318,0 1 90178743 rs474536 A G 4713.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4742,456,0 1 90486412 rs2816881 T G 2093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=0.24;SOR=0.621 GT:AD:DP:GQ:PL 0/1:67,83:150:99:2122,0,1559 1 90493026 rs10922744 G A 2815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.269;SOR=0.458 GT:AD:DP:GQ:PL 0/1:101,125:226:99:2844,0,2403 1 91728053 rs585898 G A 2153.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2182,207,0 1 91781413 rs281992 T G 2771.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2800,279,0 1 91841301 rs282036 T C 3116.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=1.54 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3145,299,0 1 91851253 rs282026 T C 2505.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.86;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2534,222,0 1 91859795 rs282009 T C 2855.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.45;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2884,264,0 1 92174260 rs284878 A G 6478.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6507,696,0 1 92177938 rs1805113 A G 2041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.965;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.101;SOR=0.718 GT:AD:DP:GQ:PL 0/1:77,82:159:99:2070,0,1904 1 92262874 rs2810904 T C 4565.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4594,468,0 1 92428495 rs10783071 C A 3044.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3073,311,0 1 92445257 rs3088232 C G 1431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=0.168;SOR=0.959 GT:AD:DP:GQ:PL 0/1:96,63:159:99:1460,0,2529 1 92457843 rs10747493 C T 1735.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=1.355 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1764,180,0 1 92568089 rs17131602 A G 724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.715;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.901;SOR=0.402 GT:AD:DP:GQ:PL 0/1:44,31:75:99:753,0,1127 1 92647532 rs565156 C A 3579.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3608,359,0 1 92944314 rs200902533 CAGAGAG C,CAGAGAGAGAGAG 3129.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=8.118;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=41.18;ReadPosRankSum=0.404;SOR=1.14 GT:AD:DP:GQ:PL 1/2:4,42,30:126:99:3167,1209,1492,1698,0,1855 1 92946479 rs11164605 G A 6391.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6420,647,0 1 92948938 rs34631763 C T 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-1.721;SOR=0.786 GT:AD:DP:GQ:PL 0/1:35,30:65:99:644,0,920 1 92979354 rs6603979 A G 4197.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4226,405,0 1 93073228 rs11808092 C A 395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.97;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.42;ReadPosRankSum=-0.133;SOR=1.23 GT:AD:DP:GQ:PL 0/1:52,21:73:99:424,0,1270 1 93089823 rs7514716 T C 3960.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3989,419,0 1 93160902 rs2391199 T C 3328.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3357,320,0 1 93580581 rs2815427 G C 2621.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2650,266,0 1 93581024 rs2295423 T C 2628.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2657,265,0 1 93620393 rs1060622 G A 2842.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2871,289,0 1 93671073 . G A 610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.561;SOR=0.676 GT:AD:DP:GQ:PL 0/1:27,28:55:99:639,0,742 1 93672723 rs2815413 A C 2364.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2393,234,0 1 93998640 rs34814765 AT A 3179.73 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.97;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3217,259,0 1 94343233 rs3789457 T C 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.246;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=-0.214;SOR=0.625 GT:AD:DP:GQ:PL 0/1:85,87:172:99:2415,0,2189 1 94374576 rs2273406 G A 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.9;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-2.484;SOR=0.964 GT:AD:DP:GQ:PL 0/1:64,72:136:99:1791,0,1493 1 94471075 rs1762114 A G 4076.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4105,391,0 1 94471154 rs4147863 C T 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.753;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=4.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=-0.345;SOR=1.148 GT:AD:DP:GQ:PL 0/1:69,48:117:99:1123,0,1738 1 94473845 rs2275029 T C 2985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.06;ReadPosRankSum=-0.955;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,80:175:99:0|1:94473845_T_C:3014,0,4916 1 94473846 rs56142141 G A 2982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.04;ReadPosRankSum=-0.592;SOR=0.679 GT:AD:DP:GQ:PGT:PID:PL 0/1:96,79:175:99:0|1:94473845_T_C:3011,0,4938 1 94473864 rs1800739 C T 2628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.814;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.38;ReadPosRankSum=1.127;SOR=0.836 GT:AD:DP:GQ:PL 0/1:79,64:143:99:2657,0,1862 1 94474328 rs4147857 T C 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.55;ReadPosRankSum=-0.012;SOR=0.9 GT:AD:DP:GQ:PL 0/1:66,82:148:99:2181,0,1694 1 94476388 rs1801574 C G 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.039;SOR=0.761 GT:AD:DP:GQ:PL 0/1:118,105:223:99:2487,0,3029 1 94487285 rs55860151 AAC A 1321.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.461;QD=17.17;ReadPosRankSum=1.185;SOR=0.476 GT:AD:DP:GQ:PL 0/1:39,38:77:99:1359,0,1514 1 94544135 rs4147887 A AC 284.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.509;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.389;SOR=0.616 GT:AD:DP:GQ:PL 0/1:14,13:27:99:322,0,349 1 94544233 rs4147831 G A 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.83;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=2.34;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.917;QD=14.38;ReadPosRankSum=1.24;SOR=0.416 GT:AD:DP:GQ:PL 0/1:24,31:55:99:819,0,530 1 94544276 rs4147830 G A 541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=4.701;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.873;QD=12.9;ReadPosRankSum=0.231;SOR=0.221 GT:AD:DP:GQ:PL 0/1:17,25:42:99:570,0,385 1 94578548 rs4847281 T C 3581.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3610,360,0 1 94639447 rs1999272 C T 5919.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5948,612,0 1 94667430 rs5776210 G GA 1256.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.18;ReadPosRankSum=-0.181;SOR=0.941 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1294,118,0 1 95001600 rs698946 A C 4365.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4394,438,0 1 95330372 rs859098 G A 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-1.156;SOR=0.602 GT:AD:DP:GQ:PL 0/1:61,56:117:99:1350,0,1528 1 95615748 rs71876426 C CT 79.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.939;QD=0.63;ReadPosRankSum=0.883;SOR=0.58 GT:AD:DP:GQ:PL 0/1:107,19:136:99:117,0,2212 1 95709821 rs259358 T C 6469.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6498,642,0 1 95709939 rs2296308 T G 6096.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6125,581,0 1 97981395 rs1801159 T C 2249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=4.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.766;SOR=0.468 GT:AD:DP:GQ:PL 0/1:80,93:173:99:2278,0,1752 1 98348885 rs1801265 G A 974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=1.038;SOR=0.641 GT:AD:DP:GQ:PL 0/1:73,48:121:99:1003,0,1756 1 99127392 rs9728148 T C 7273.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7302,761,0 1 99150635 rs9433747 G A 1582.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.958 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1611,150,0 1 99164246 . CT C 224.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.029;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=2.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.96;ReadPosRankSum=0.703;SOR=0.479 GT:AD:DP:GQ:PL 0/1:53,23:85:99:262,0,1274 1 99225627 rs2019213 G A 2056.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.42;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2085,224,0 1 99387628 rs34854879 T TA 1633.73 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.961 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1671,177,0 1 99418647 rs309087 G C 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-1.25;SOR=0.846 GT:AD:DP:GQ:PL 0/1:82,60:142:99:1473,0,2122 1 99771308 rs138327459 G C 1673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.167;SOR=0.867 GT:AD:DP:GQ:PL 0/1:78,74:152:99:1702,0,1856 1 100195237 rs142004734 G A 786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=4.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.47;SOR=0.541 GT:AD:DP:GQ:PL 0/1:37,36:73:99:815,0,856 1 100203648 rs7537296 C T 1697.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1726,156,0 1 100203693 rs7514021 G A 2404.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2433,234,0 1 100598866 rs472498 G A 8248.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=0.998 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,185:185:99:1|1:100598866_G_A:8277,557,0 1 100598867 rs687513 C T 8248.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=0.998 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,185:185:99:1|1:100598866_G_A:8277,557,0 1 100661987 . GAAAAAA G,GA 1114.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.439;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=3.128;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=33.78;ReadPosRankSum=1.062;SOR=0.105 GT:AD:DP:GQ:PL 1/2:2,15,16:34:99:1152,250,281,204,0,167 1 100671867 rs183058253 A T 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=0.488;SOR=0.659 GT:AD:DP:GQ:PL 0/1:19,64:83:99:1235,0,197 1 100672060 rs12021720 T C 2611.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2640,261,0 1 101005090 rs2809819 G A 6478.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6507,694,0 1 101203664 rs3917020 T G 1647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.547;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=10.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=-0.757;SOR=1.593 GT:AD:DP:GQ:PL 0/1:55,62:117:99:1676,0,1123 1 101203827 rs3176879 G A 4089.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4118,434,0 1 101704532 rs3737577 G T 1986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=4.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.3;SOR=1.038 GT:AD:DP:GQ:PL 0/1:81,82:163:99:2015,0,2083 1 102296279 rs10493973 T C 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.776;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=2.874;SOR=0.733 GT:AD:DP:GQ:PL 0/1:62,59:121:99:1447,0,1467 1 103352451 rs2229783 A G 4763.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4792,473,0 1 103354138 rs1676486 A G 4269.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.334 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4298,433,0 1 103354428 rs1763347 A G 2674.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.43;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2703,240,0 1 103379918 rs3753841 G A 3176.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3205,333,0 1 103380379 rs34228277 T TA 587.25 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.5;MQ=60.6;MQRankSum=0.845;QD=16.78;ReadPosRankSum=1.405;SOR=0.399 GT:AD:DP:GQ:PL 0/1:7,28:41:90:624,0,90 1 103444679 rs11164649 T G 3090.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3119,309,0 1 103471456 rs71752747 CCAT C 3514.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.085;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.5;MQRankSum=0.405;QD=40.87;ReadPosRankSum=-1.339;SOR=0.855 GT:AD:DP:GQ:PL 1/1:2,84:93:99:3542,175,0 1 103496805 rs36076089 GA G 2764.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.15;MLEAC=2;MLEAF=1;MQ=60.8;MQRankSum=1.161;QD=19.07;ReadPosRankSum=-0.392;SOR=0.491 GT:AD:DP:GQ:PL 1/1:13,132:151:97:2802,97,0 1 104076462 rs6697444 C T 815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.5;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=0.336;SOR=0.808 GT:AD:DP:GQ:PL 0/1:63,41:104:99:844,0,1465 1 104076495 rs6702220 A G 698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.265;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.32;ReadPosRankSum=0.068;SOR=1.085 GT:AD:DP:GQ:PL 0/1:50,34:84:99:727,0,1075 1 104116565 rs79005152 A T 2555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.956;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.5;MQ=57.4;MQRankSum=-0.958;QD=12.41;ReadPosRankSum=-0.173;SOR=0.536 GT:AD:DP:GQ:PL 0/1:106,100:206:99:2584,0,2644 1 104166496 rs1140401 T C 1265.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.795;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.5;MQ=36.85;MQRankSum=-0.961;QD=4.31;ReadPosRankSum=-1.638;SOR=0.858 GT:AD:DP:GQ:PL 0/1:218,76:294:99:1294,0,5312 1 107961196 rs17530804 G A 215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=5.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.99;ReadPosRankSum=-1.298;SOR=1.68 GT:AD:DP:GQ:PL 0/1:25,11:36:99:244,0,592 1 107979396 rs480392 A C 4352.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4381,423,0 1 108185301 rs12403266 C G 7802.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.33;SOR=0.716 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,176:176:99:1|1:108185301_C_G:7831,545,0 1 108185309 rs12410676 G A 7874.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.75;SOR=0.785 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,180:180:99:1|1:108185301_C_G:7903,551,0 1 108769307 rs367656931 G A 233.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.77;QD=29.22;SOR=4.407 GT:AD:DP:GQ:PL 1/1:0,8:8:24:262,24,0 1 108771524 rs200205508 C T 1200.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.63;QD=37.52;SOR=5.549 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1229,96,0 1 108994925 rs115514944 A G 1998.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.13;QD=24.98;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2027,240,0 1 109268573 rs4494160 T C 4427.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4456,455,0 1 109273456 rs4970809 A G 5843.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5872,569,0 1 109276106 rs139664209 G A 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.865;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-0.523;SOR=0.564 GT:AD:DP:GQ:PL 0/1:73,62:135:99:1361,0,2026 1 109289353 rs1124427 C G 5148.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.106 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5177,510,0 1 109302598 rs201501170 T C 470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-1.177;SOR=0.641 GT:AD:DP:GQ:PL 0/1:13,23:36:99:499,0,309 1 109338861 rs1127635 G C 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.393;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=9.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.48;ReadPosRankSum=-0.9;SOR=1.524 GT:AD:DP:GQ:PL 0/1:50,59:109:99:1607,0,1183 1 109340877 rs140899387 G GT 497.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.958;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.233;QD=8.16;ReadPosRankSum=-1.336;SOR=0.642 GT:AD:DP:GQ:PL 0/1:36,25:61:99:535,0,781 1 109369915 rs7551421 G T 2374.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.207 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2403,237,0 1 109377157 rs5776950 TA T 1933.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=29.75;ReadPosRankSum=1.203;SOR=0.824 GT:AD:DP:GQ:PL 1/1:7,58:75:59:1963,59,0 1 109377159 rs200066791 A G 336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.32;ReadPosRankSum=1.251;SOR=0.35 GT:AD:DP:GQ:PL 0/1:54,24:78:99:365,0,1529 1 109394978 rs17563390 G A 1910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.842;SOR=0.749 GT:AD:DP:GQ:PL 0/1:69,76:145:99:1939,0,1797 1 109395105 rs1277207 C T 4264.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4293,428,0 1 109486196 rs338466 A G 3420.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=29.24;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3449,350,0 1 109486240 rs3215062 TA T 3017.73 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.44;QD=31.43;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3055,289,0 1 109529322 rs61696019 T TAA 3215.73 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=44.66;SOR=1.675 GT:AD:DP:GQ:PL 1/1:0,72:72:99:3253,220,0 1 109656946 rs667524 T C 2338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.209;SOR=0.857 GT:AD:DP:GQ:PL 0/1:115,100:215:99:2367,0,2794 1 109704618 rs678238 A G 6261.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6290,603,0 1 109735298 rs658779 T C 5678.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5707,565,0 1 109735416 rs659543 A C 6804.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6833,695,0 1 109735504 rs659659 T C 6185.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.73;SOR=1.317 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6214,566,0 1 109737063 rs2359246 C T 4806.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4835,473,0 1 109737090 rs2359245 G A 5245.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5274,538,0 1 109737132 rs2359244 T C 5588.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5617,587,0 1 109737172 rs2359243 C T 5154.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5183,513,0 1 109742485 rs913179 G A 5224.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5253,519,0 1 109745618 rs1052878 T C 2867.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2896,285,0 1 109771063 rs683182 T C 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.507;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=1.925;SOR=0.68 GT:AD:DP:GQ:PL 0/1:39,28:67:99:646,0,856 1 109792735 rs59201433 A ACGC 5206.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.206;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.84;ReadPosRankSum=-0.234;SOR=0.679 GT:AD:DP:GQ:PL 1/1:8,179:187:99:5244,279,0 1 109794252 rs454107 T C 8073.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.92;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,238:238:99:8102,714,0 1 109795026 rs413380 T C 8358.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8387,795,0 1 109795608 rs437444 T C 6910.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6939,671,0 1 109806834 rs6698843 C T 3889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=2.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.809;SOR=0.842 GT:AD:DP:GQ:PL 0/1:148,153:301:99:3918,0,3748 1 109807099 rs6689614 G A 3025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.257;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=1.995;SOR=0.822 GT:AD:DP:GQ:PL 0/1:111,117:228:99:3054,0,2667 1 109813236 rs79668084 TTCCCAGTCTTGGGG T 1755.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.743;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.986;SOR=1.101 GT:AD:DP:GQ:PL 0/1:80,49:129:99:1793,0,12056 1 109814880 rs4970834 C T 1922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.9;ReadPosRankSum=-0.107;SOR=0.648 GT:AD:DP:GQ:PL 0/1:131,85:216:99:1951,0,3259 1 109815252 rs611917 A G 1474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.372;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-1.197;SOR=0.874 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1503,0,1394 1 109816176 rs441853 A C 7022.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7051,731,0 1 109836842 rs646335 C G 559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.629;SOR=0.606 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,26:56:99:1|0:109836835_A_G:588,0,1161 1 109838918 rs629001 C T 5412.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5441,558,0 1 109839392 rs604349 A G 1220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=-0.822;SOR=0.646 GT:AD:DP:GQ:PL 0/1:88,58:146:99:1249,0,2296 1 109839433 rs1278285 A G 5899.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=1.018 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5928,566,0 1 109884775 rs2228604 T G 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.682;SOR=0.728 GT:AD:DP:GQ:PL 0/1:42,37:79:99:918,0,1130 1 109897103 rs11142 A G 1511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.597;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=0.613;SOR=0.822 GT:AD:DP:GQ:PL 0/1:51,61:112:99:1540,0,1096 1 109910013 rs11581665 C T 497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=2.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=0.932;SOR=0.321 GT:AD:DP:GQ:PL 0/1:20,25:45:99:526,0,477 1 109940503 rs72646553 G C 2511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.318;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.261;SOR=0.627 GT:AD:DP:GQ:PL 0/1:93,103:196:99:2540,0,2428 1 110129512 . G A 495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-1.131;SOR=1.022 GT:AD:DP:GQ:PL 0/1:25,22:47:99:524,0,661 1 110169957 rs524998 A G 3672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.371;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.915;SOR=0.703 GT:AD:DP:GQ:PL 0/1:167,154:321:99:3701,0,4037 1 110170896 rs863978 T C 2692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-1.259;SOR=0.777 GT:AD:DP:GQ:PL 0/1:124,107:231:99:2721,0,3388 1 110201699 rs506008 T C 3935.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.12;QD=29.82;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3964,395,0 1 110210780 rs530021 C G 4640.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=1.373 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4669,481,0 1 110233138 rs74837985 G C 1299.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.62;QD=30.23;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1328,129,0 1 110300441 rs3818562 G A 1175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=-0.777;SOR=0.586 GT:AD:DP:GQ:PL 0/1:84,54:138:99:1204,0,2252 1 110300504 rs10776700 A G 4876.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4905,458,0 1 110456866 rs2297706 C A 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.103;SOR=0.859 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1441,0,2061 1 110466338 rs333970 C A 3190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.77;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.036;SOR=0.757 GT:AD:DP:GQ:PL 0/1:150,128:278:99:3219,0,3891 1 110466466 rs1058885 T C 3953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=4.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.92;ReadPosRankSum=-1.564;SOR=0.698 GT:AD:DP:GQ:PL 0/1:110,155:265:99:3982,0,2730 1 110466709 rs333971 T C 7609.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.32;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7638,729,0 1 110466810 rs2229166 C A 1805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.043;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-1.965;SOR=0.678 GT:AD:DP:GQ:PL 0/1:88,77:165:99:1834,0,2163 1 110581780 rs1834 T G 1986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.629;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-2.984;SOR=0.716 GT:AD:DP:GQ:PL 0/1:66,78:144:99:2015,0,1585 1 110709719 rs7527375 T C 3830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.217;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.78;ReadPosRankSum=1.024;SOR=0.522 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,100:204:99:0|1:110709719_T_C:3859,0,5720 1 110709720 rs12737742 G A 3830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.87;ReadPosRankSum=0.905;SOR=0.536 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,100:203:99:0|1:110709719_T_C:3859,0,5720 1 110738296 rs2784140 G A 2377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=-1.264;SOR=0.699 GT:AD:DP:GQ:PL 0/1:171,115:286:99:2406,0,4099 1 110740688 rs2761445 C T 2563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.22;SOR=0.603 GT:AD:DP:GQ:PL 0/1:152,117:269:99:2592,0,3768 1 110950277 rs6698159 G A 2354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-1.534;SOR=0.935 GT:AD:DP:GQ:PL 0/1:101,91:192:99:2383,0,2580 1 110950439 rs6674775 C T 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.571;SOR=0.614 GT:AD:DP:GQ:PL 0/1:81,90:171:99:2221,0,2096 1 111060669 rs1281175 T C 6612.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.91;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6641,585,0 1 111061011 rs3748731 C A 2650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.233;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=0.424;SOR=0.543 GT:AD:DP:GQ:PL 0/1:87,111:198:99:2679,0,2143 1 111061062 rs1281174 T C 5966.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.268;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.97;ReadPosRankSum=2.301;SOR=0.727 GT:AD:DP:GQ:PL 1/1:2,179:181:99:5995,494,0 1 111441829 rs1803259 C T 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=1.019;SOR=0.804 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1077,0,1130 1 111494194 rs2232041 C T 1988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.458;SOR=0.625 GT:AD:DP:GQ:PL 0/1:88,80:168:99:2017,0,2340 1 111661413 rs325916 T C 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=1.284;SOR=0.458 GT:AD:DP:GQ:PL 0/1:32,56:88:99:1383,0,696 1 111726213 rs694180 A G 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.258;SOR=0.88 GT:AD:DP:GQ:PL 0/1:54,64:118:99:1519,0,1352 1 111730901 rs608881 C T 1861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.709;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=-0.886;SOR=0.669 GT:AD:DP:GQ:PL 0/1:105,95:200:99:1890,0,2671 1 111737183 rs660173 C T 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.517;SOR=0.956 GT:AD:DP:GQ:PL 0/1:98,81:179:99:1976,0,2575 1 111773568 rs2255089 G C 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.131;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.904;SOR=0.814 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1364,0,1379 1 111778241 rs2764544 C T 1964.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1993,201,0 1 111778325 rs11556868 C T 2127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.7;SOR=0.641 GT:AD:DP:GQ:PL 0/1:81,90:171:99:2156,0,1931 1 111783982 rs13721 C A 1170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=2.12;SOR=0.781 GT:AD:DP:GQ:PL 0/1:35,49:84:99:1199,0,865 1 111783996 rs2494007 A G 2890.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2919,282,0 1 111854889 rs41282492 A G 3500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.48;ReadPosRankSum=0.273;SOR=0.783 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,91:163:99:0|1:111854889_A_G:3529,0,3044 1 111854895 rs41282494 G A 3461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.5;ReadPosRankSum=1.485;SOR=0.859 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,89:161:99:0|1:111854889_A_G:3490,0,3104 1 111854938 rs41282496 G T 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.52;SOR=0.796 GT:AD:DP:GQ:PL 0/1:58,80:138:99:1903,0,1349 1 111857154 rs2786152 T C 712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.252;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=1.121;SOR=0.77 GT:AD:DP:GQ:PL 0/1:43,32:75:99:741,0,957 1 111861822 rs17027410 G A 1871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=8.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=0.803;SOR=1.197 GT:AD:DP:GQ:PL 0/1:135,86:221:99:1900,0,3447 1 111861841 rs2275253 A G 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.69;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=8.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=-0.113;SOR=0.983 GT:AD:DP:GQ:PL 0/1:148,99:247:99:2204,0,3435 1 111861974 rs2275254 T C 2450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.342;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-1.014;SOR=0.899 GT:AD:DP:GQ:PL 0/1:105,91:196:99:2479,0,2600 1 111862078 rs12094378 C T 1398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=1.708;SOR=0.743 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1427,0,1644 1 111862952 rs2256721 T G 2319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.666;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.765;SOR=0.678 GT:AD:DP:GQ:PL 0/1:131,100:231:99:2348,0,3074 1 111891192 rs2184884 C A 1317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-1.143;SOR=0.58 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1346,0,1160 1 111893958 rs1668 A G 1681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.205;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.87;ReadPosRankSum=-1.244;SOR=0.949 GT:AD:DP:GQ:PL 0/1:38,68:106:99:1710,0,733 1 111957097 rs7825 C G 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=2.291;SOR=0.778 GT:AD:DP:GQ:PL 0/1:81,63:144:99:1409,0,1888 1 111957311 rs10067 G C 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.527;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=3.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.678;SOR=0.975 GT:AD:DP:GQ:PL 0/1:87,76:163:99:1953,0,2206 1 111957693 rs2485319 A G 1857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.511;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=0.451;SOR=0.659 GT:AD:DP:GQ:PL 0/1:62,71:133:99:1886,0,1597 1 111969719 rs1264894 A G 2375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-0.188;SOR=0.69 GT:AD:DP:GQ:PL 0/1:81,97:178:99:2404,0,2093 1 112029193 rs2252739 A G 2007.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.48;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2036,240,0 1 112042632 rs2229155 A G 4846.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,154:156:99:4875,461,0 1 112042787 rs35511654 T G 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.036;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-1.009;SOR=0.935 GT:AD:DP:GQ:PL 0/1:95,67:162:99:1949,0,2388 1 112269872 rs197434 G A 8376.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,270:270:99:8405,808,0 1 112298551 rs368179651 C G 1752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=4.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-1.494;SOR=1.154 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1781,0,1910 1 112298582 rs197392 A G 2388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.091;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-2.53;SOR=0.816 GT:AD:DP:GQ:PL 0/1:86,95:181:99:2417,0,2091 1 112298829 rs197393 T C 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.391;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.149;SOR=0.485 GT:AD:DP:GQ:PL 0/1:102,89:191:99:2204,0,2754 1 112305406 . TA T 260.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.95;ReadPosRankSum=0.792;SOR=0.734 GT:AD:DP:GQ:PL 0/1:48,18:86:99:298,0,981 1 112308953 rs197412 T C 2222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.793;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=0.162;SOR=0.925 GT:AD:DP:GQ:PL 0/1:78,83:161:99:2251,0,1827 1 112308972 rs197413 G A 1997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.264;SOR=1.031 GT:AD:DP:GQ:PL 0/1:82,80:162:99:2026,0,2176 1 112998539 rs201085546 C CT 767.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=1.262;SOR=0.701 GT:AD:DP:GQ:PL 0/1:33,34:77:99:805,0,625 1 112999227 rs1175641 G A 4852.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4881,444,0 1 113051909 rs36006679 G A 3127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.001;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.585;SOR=0.815 GT:AD:DP:GQ:PL 0/1:153,125:278:99:3156,0,4505 1 113202417 rs2932536 G A 1726.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.238 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1755,171,0 1 113239478 rs2999158 T C 2879.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2908,285,0 1 113255389 rs10857971 C T 5363.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5392,557,0 1 113255456 rs34611728 C A 2090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=5.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.154;SOR=1.101 GT:AD:DP:GQ:PL 0/1:96,85:181:99:2119,0,2447 1 113264930 rs35995150 C G 1606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.805;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=-0.372;SOR=0.971 GT:AD:DP:GQ:PL 0/1:98,68:166:99:1635,0,2371 1 113456546 rs1049434 A T 2066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.549;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.639;SOR=0.77 GT:AD:DP:GQ:PL 0/1:91,82:173:99:2095,0,2380 1 113460676 rs199817200 CAATAAATA C,CAATA 2553.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=44.8;SOR=1.812 GT:AD:DP:GQ:PL 1/2:0,24,33:60:99:2591,1596,1554,1004,0,1199 1 113657092 rs1216793 A C 3695.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.629 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3724,357,0 1 113659065 rs10541977 ACT A 3999.73 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=44.44;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,90:90:99:4037,271,0 1 114240319 rs3835263 T TA 1829.73 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.59;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1867,150,0 1 114280717 rs2273758 A C 331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.961;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.91;ReadPosRankSum=-0.94;SOR=1.244 GT:AD:DP:GQ:PL 0/1:34,14:48:99:360,0,819 1 114354654 rs3195954 T C 4108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.999;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.351;SOR=0.655 GT:AD:DP:GQ:PL 0/1:143,152:295:99:4137,0,3472 1 114354942 rs3789604 T G 2828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=0.818;SOR=0.812 GT:AD:DP:GQ:PL 0/1:104,112:216:99:2857,0,2563 1 114372332 rs57877024 TA T 400.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=0.575;SOR=0.602 GT:AD:DP:GQ:PL 0/1:23,24:47:99:438,0,472 1 114377568 rs2476601 A G 2563.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2592,261,0 1 114424601 rs1217381 C T 3341.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.322 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3370,321,0 1 114438951 rs1217401 A G 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.889;SOR=0.623 GT:AD:DP:GQ:PL 0/1:100,69:169:99:1606,0,2582 1 114443035 rs3789613 C G 1588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.069;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.203;SOR=0.737 GT:AD:DP:GQ:PL 0/1:70,64:134:99:1617,0,1710 1 114443899 rs17464525 G A 1259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.73;ReadPosRankSum=-1.758;SOR=0.779 GT:AD:DP:GQ:PL 0/1:102,61:163:99:1288,0,2630 1 114444444 rs34751342 T G 1637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=0.03;SOR=0.818 GT:AD:DP:GQ:PL 0/1:55,70:125:99:1666,0,1277 1 114515717 rs2358996 G A 5585.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5614,583,0 1 114680540 rs17032441 C T 3323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=6.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-1.473;SOR=0.441 GT:AD:DP:GQ:PL 0/1:148,142:290:99:3352,0,3682 1 114940632 rs5777192 CA C 1352.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=2.068;MLEAC=2;MLEAF=1;MQ=60.84;MQRankSum=0.663;QD=20.5;ReadPosRankSum=-0.756;SOR=1.402 GT:AD:DP:GQ:PL 1/1:4,62:68:95:1390,95,0 1 114948281 rs6537825 A G 5616.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5645,540,0 1 114973429 rs12083584 T C 522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.356;SOR=0.707 GT:AD:DP:GQ:PL 0/1:31,25:56:99:551,0,700 1 115053498 rs6691166 A G 2395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.956;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=1.622;SOR=0.744 GT:AD:DP:GQ:PL 0/1:131,91:222:99:2424,0,3154 1 115119392 rs41274118 T C 460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.55;ReadPosRankSum=-1.591;SOR=0.602 GT:AD:DP:GQ:PL 0/1:36,25:61:99:489,0,889 1 115124203 rs62621917 T C 2207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.99;SOR=0.814 GT:AD:DP:GQ:PL 0/1:76,92:168:99:2236,0,1761 1 115164659 rs116241531 G C 2016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.445;SOR=0.648 GT:AD:DP:GQ:PL 0/1:103,94:197:99:2045,0,2336 1 115168440 rs61752477 T G 3006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.062;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.88;ReadPosRankSum=-0.025;SOR=0.693 GT:AD:DP:GQ:PL 0/1:91,111:202:99:3035,0,2216 1 115222237 rs34526199 T A 1931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=11.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=0.762;SOR=0.83 GT:AD:DP:GQ:PL 0/1:96,86:182:99:1960,0,2262 1 115231254 rs61752479 G A 1826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.789;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.041;SOR=0.741 GT:AD:DP:GQ:PL 0/1:71,79:150:99:1855,0,1594 1 115236057 rs17602729 G A 477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.603;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.92;ReadPosRankSum=0.459;SOR=1.022 GT:AD:DP:GQ:PL 0/1:44,25:69:99:506,0,1023 1 115280193 . CA C 60.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=4.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.59;ReadPosRankSum=0;SOR=0.317 GT:AD:DP:GQ:PL 0/1:85,18:105:98:98,0,1968 1 115280605 rs61752481 A C 945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-0.906;SOR=1.003 GT:AD:DP:GQ:PL 0/1:47,43:90:99:974,0,1073 1 115537367 rs61730058 A C 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.536;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.18;ReadPosRankSum=0.101;SOR=0.92 GT:AD:DP:GQ:PL 0/1:70,40:110:99:928,0,1675 1 115576023 rs10776792 A G 3239.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3268,327,0 1 115601615 rs7523818 A G 2241.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.194 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2270,227,0 1 115604798 rs10776795 C T 1465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-0.559;SOR=0.842 GT:AD:DP:GQ:PL 0/1:75,76:151:99:1494,0,1808 1 116268178 rs35967913 GA G 164.92 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.38;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0;QD=6.87;ReadPosRankSum=-0.153;SOR=1.071 GT:AD:DP:GQ:PL 0/1:11,13:43:99:201,0,238 1 116283343 rs9428083 A G 1672.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1701,178,0 1 116534852 rs4046190 C T 3195.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3224,321,0 1 116569530 rs2488429 G C 4035.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4064,402,0 1 116609126 rs3833541 TC T 3788.73 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=33.83;SOR=1.807 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3826,337,0 1 117122285 . G GTCC 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.593;ClippingRankSum=0;DP=214;ExcessHet=3.0103;FS=19.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=2.668;SOR=2.302 GT:AD:DP:GQ:PL 0/1:101,77:179:99:1817,0,5530 1 117122288 rs647711 G C 3240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.483;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=7.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.52;ReadPosRankSum=1.131;SOR=1.477 GT:AD:DP:GQ:PL 0/1:81,85:166:99:3269,0,2456 1 117487710 rs10159095 A G 9444.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.98;SOR=1.436 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,210:210:99:1|1:117487710_A_G:9473,638,0 1 117487711 rs4546904 T A 9444.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.98;SOR=1.436 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,210:210:99:1|1:117487710_A_G:9473,638,0 1 117554421 rs3754112 A G 2196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.204;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.769;SOR=0.68 GT:AD:DP:GQ:PL 0/1:90,83:173:99:2225,0,2287 1 117559726 rs2249265 A G 3292.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.565 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3321,312,0 1 117602960 rs2244501 C A 4485.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.742 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4514,440,0 1 117603188 rs2244406 G T 4088.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.846;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=3.915;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.74;ReadPosRankSum=-0.516;SOR=0.894 GT:AD:DP:GQ:PL 1/1:1,132:133:99:4117,388,0 1 117617705 rs998532 A G 6842.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6871,689,0 1 117618067 rs1289673 C T 7870.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7899,806,0 1 117622286 rs2801939 A G 2851.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2880,291,0 1 117658229 rs149166047 C T 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.744;SOR=1.022 GT:AD:DP:GQ:PL 0/1:48,61:109:99:1449,0,1105 1 117690272 rs10754339 G A 4952.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.2 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4981,485,0 1 118165691 rs1630312 C T 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.789;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-1.146;SOR=0.851 GT:AD:DP:GQ:PL 0/1:154,107:261:99:2405,0,3674 1 118165973 rs1627787 C T 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.442;SOR=0.612 GT:AD:DP:GQ:PL 0/1:107,99:206:99:2246,0,2647 1 118166096 rs2884587 C T 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.539;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.744;SOR=0.664 GT:AD:DP:GQ:PL 0/1:98,92:190:99:2113,0,2720 1 119469188 rs10494217 G T 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-1.802;SOR=0.653 GT:AD:DP:GQ:PL 0/1:90,73:163:99:1623,0,2156 1 119923724 rs2275607 T C 673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=0.659;SOR=0.857 GT:AD:DP:GQ:PL 0/1:47,32:79:99:702,0,1158 1 119927680 rs6667679 A G 1463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.98;SOR=0.828 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1492,0,1291 1 120057246 rs1047303 C A 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=3.27;MLEAC=1;MLEAF=0.5;MQ=56.9;MQRankSum=-0.277;QD=12.9;ReadPosRankSum=-0.326;SOR=0.956 GT:AD:DP:GQ:PL 0/1:89,113:202:99:2635,0,2128 1 120165826 rs12076924 C T 3150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.465;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.382;SOR=0.749 GT:AD:DP:GQ:PL 0/1:148,131:279:99:3179,0,3708 1 120166681 rs12067843 G A 1688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=8.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=-0.427;SOR=0.359 GT:AD:DP:GQ:PL 0/1:126,79:205:99:1717,0,3251 1 120285546 rs543703 G A 3774.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3803,374,0 1 120548095 rs143195893 C A 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.508;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=5.274;MLEAC=1;MLEAF=0.5;MQ=51.57;MQRankSum=0.071;QD=11.57;ReadPosRankSum=-0.173;SOR=1.009 GT:AD:DP:GQ:PL 0/1:120,114:234:99:2736,0,2810 1 120611960 rs139076095 C T 1347.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0;DB;DP=607;ExcessHet=3.0103;FS=5.645;MLEAC=1;MLEAF=0.5;MQ=53.69;MQRankSum=-17.631;QD=2.22;ReadPosRankSum=1.8;SOR=1.162 GT:AD:DP:GQ:PL 0/1:490,116:606:99:1376,0,13341 1 120612002 rs372504208 CGG C 4968.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.845;ClippingRankSum=0;DB;DP=660;ExcessHet=3.0103;FS=3.942;MLEAC=1;MLEAF=0.5;MQ=54.79;MQRankSum=-21.116;QD=7.66;ReadPosRankSum=0.181;SOR=1.034 GT:AD:DP:GQ:PL 0/1:493,156:649:99:5006,0,20186 1 120612006 rs4021006 G A 5412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=654;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.5;MQ=54.88;MQRankSum=9.231;QD=8.3;ReadPosRankSum=1.12;SOR=0.532 GT:AD:DP:GQ:PL 0/1:407,245:652:99:5441,0,12810 1 120612034 rs201668322 T G 2193.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.27;ClippingRankSum=0;DB;DP=621;ExcessHet=3.0103;FS=4.988;MLEAC=1;MLEAF=0.5;MQ=55.88;MQRankSum=-21.019;QD=3.54;ReadPosRankSum=1.462;SOR=0.822 GT:AD:DP:GQ:PL 0/1:473,146:619:99:2222,0,13380 1 120612040 . T TCCGCCGCCGCCGCCGCCG 2572.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0;DP=652;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=55.6;MQRankSum=-17.237;QD=5.33;ReadPosRankSum=3.952;SOR=0.575 GT:AD:DP:GQ:PL 0/1:400,83:500:99:2610,0,16289 1 143767466 rs77641628 G A 2804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.144;ClippingRankSum=0;DB;DP=1208;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=52.46;MQRankSum=1.322;QD=2.33;ReadPosRankSum=-1.117;SOR=0.574 GT:AD:DP:GQ:PL 0/1:991,214:1205:99:2833,0,26886 1 143767513 rs6604511 A T 11542.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.139;ClippingRankSum=0;DB;DP=1380;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=52.17;MQRankSum=-1.741;QD=8.38;ReadPosRankSum=0.938;SOR=0.763 GT:AD:DP:GQ:PGT:PID:PL 0/1:1018,360:1378:99:0|1:143767513_A_T:11571,0,40344 1 143767522 rs6604512 A G 11101.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.903;ClippingRankSum=0;DB;DP=1293;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.43;MQRankSum=-1.744;QD=8.59;ReadPosRankSum=0.881;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:966,327:1293:99:0|1:143767513_A_T:11130,0,39418 1 143767547 rs2490183 G A 4831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.55;ClippingRankSum=0;DB;DP=1246;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=49.73;MQRankSum=-2.385;QD=3.88;ReadPosRankSum=-0.847;SOR=0.78 GT:AD:DP:GQ:PL 0/1:943,303:1246:99:4860,0,25279 1 143767628 rs6604514 C T 2371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.113;ClippingRankSum=0;DB;DP=732;ExcessHet=3.0103;FS=3.438;MLEAC=1;MLEAF=0.5;MQ=41.92;MQRankSum=-11.668;QD=3.24;ReadPosRankSum=-0.563;SOR=1.077 GT:AD:DP:GQ:PL 0/1:595,137:732:99:2400,0,17376 1 143767643 rs61824238 T C 5648.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=12.945;ClippingRankSum=0;DB;DP=652;ExcessHet=3.0103;FS=11.446;MLEAC=1;MLEAF=0.5;MQ=42.32;MQRankSum=-21.431;QD=8.66;ReadPosRankSum=0.746;SOR=1.424 GT:AD:DP:GQ:PL 0/1:423,229:652:99:5677,0,13773 1 143767646 rs148974023 G A 3792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-10.08;ClippingRankSum=0;DB;DP=640;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=42.12;MQRankSum=5.172;QD=5.93;ReadPosRankSum=-0.551;SOR=0.508 GT:AD:DP:GQ:PL 0/1:456,184:640:99:3821,0,15789 1 143767778 rs6604516 T A 6662.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.168;ClippingRankSum=0;DB;DP=1048;ExcessHet=3.0103;FS=6.378;MLEAC=1;MLEAF=0.5;MQ=50.87;MQRankSum=-28.604;QD=6.37;ReadPosRankSum=6.873;SOR=1.125 GT:AD:DP:GQ:PL 0/1:691,355:1046:99:6691,0,16568 1 143767833 rs7521153 T C 3371.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.924;ClippingRankSum=0;DB;DP=788;ExcessHet=3.0103;FS=40.998;MLEAC=1;MLEAF=0.5;MQ=54.43;MQRankSum=-27.333;QD=4.28;ReadPosRankSum=-4.745;SOR=3.35 GT:AD:DP:GQ:PL 0/1:600,187:787:99:3400,0,15359 1 144852390 rs61804988 C T 1951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=4.317;MLEAC=1;MLEAF=0.5;MQ=57.11;MQRankSum=-6.657;QD=10.84;ReadPosRankSum=0.389;SOR=0.715 GT:AD:DP:GQ:PL 0/1:96,84:180:99:1980,0,2388 1 144852476 rs1616066 T C 2122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.136;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=5.793;MLEAC=1;MLEAF=0.5;MQ=55.03;MQRankSum=-0.363;QD=10.16;ReadPosRankSum=-0.003;SOR=0.931 GT:AD:DP:GQ:PL 0/1:119,90:209:99:2151,0,2679 1 144854180 rs4997148 T C 1148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.5;MQ=59.33;MQRankSum=-5.676;QD=4.67;ReadPosRankSum=2.028;SOR=0.811 GT:AD:DP:GQ:PL 0/1:183,63:246:99:1177,0,4889 1 144854501 rs142453097 CCT C 3543.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.5;MQ=55.67;MQRankSum=6.895;QD=17.72;ReadPosRankSum=1.648;SOR=0.583 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,92:200:99:0|1:144854491_T_G:3581,0,4364 1 144854528 rs78461771 A G 3926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.47;MQRankSum=-11.835;QD=14.71;ReadPosRankSum=-0.419;SOR=0.7 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,104:267:99:0|1:144854528_A_G:3955,0,6577 1 144854537 rs3851872 T C 3854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.633;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.5;MQ=56.87;MQRankSum=-11.775;QD=13.34;ReadPosRankSum=1.845;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 0/1:181,108:289:99:0|1:144854528_A_G:3883,0,6864 1 144854581 rs78371650 T C 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.5;MQ=57.75;MQRankSum=-12.398;QD=8.72;ReadPosRankSum=0.565;SOR=0.856 GT:AD:DP:GQ:PGT:PID:PL 0/1:220,79:299:99:0|1:144854581_T_C:2636,0,8856 1 144854594 rs79028512 G T 2769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.5;MQ=58.12;MQRankSum=-11.758;QD=9.29;ReadPosRankSum=0.248;SOR=0.856 GT:AD:DP:GQ:PGT:PID:PL 0/1:219,79:298:99:0|1:144854581_T_C:2798,0,9082 1 144854597 rs3851873 T C 7836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.67;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.19;MQRankSum=-4.894;QD=26.04;ReadPosRankSum=0.484;SOR=0.687 GT:AD:DP:GQ:PL 0/1:105,196:301:99:7865,0,3746 1 144854598 rs3863691 C T 4183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.158;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=1.97;MLEAC=1;MLEAF=0.5;MQ=58.2;MQRankSum=5.789;QD=13.81;ReadPosRankSum=0.789;SOR=0.575 GT:AD:DP:GQ:PL 0/1:188,115:303:99:4212,0,7385 1 144854675 rs79179886 C T 623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.5;MQ=59.51;MQRankSum=1.497;QD=2.8;ReadPosRankSum=-0.662;SOR=0.752 GT:AD:DP:GQ:PL 0/1:180,43:223:99:652,0,4959 1 144855812 rs1699754 T C 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.156;MLEAC=1;MLEAF=0.5;MQ=55.98;MQRankSum=-9.779;QD=8;ReadPosRankSum=-1.399;SOR=0.699 GT:AD:DP:GQ:PL 0/1:138,80:218:99:1772,0,3300 1 144855866 rs1698582 A G 1532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.238;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=3.609;MLEAC=1;MLEAF=0.5;MQ=55.94;MQRankSum=-10.582;QD=7.9;ReadPosRankSum=-0.846;SOR=0.97 GT:AD:DP:GQ:PL 0/1:132,62:194:99:1561,0,3416 1 144863401 rs71225704 T C 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.078;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=3.033;QD=9.09;ReadPosRankSum=-0.667;SOR=0.734 GT:AD:DP:GQ:PL 0/1:113,81:194:99:1791,0,2649 1 144864277 rs139257887 G A 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.752;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=3.107;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=0.909;QD=4.55;ReadPosRankSum=0.69;SOR=0.465 GT:AD:DP:GQ:PL 0/1:135,48:183:99:861,0,3937 1 144865850 rs1613780 G T 2334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.023;QD=10.56;ReadPosRankSum=-2.092;SOR=0.83 GT:AD:DP:GQ:PL 0/1:114,107:221:99:2363,0,2646 1 144866643 rs1620560 G A 3492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.531;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.383;SOR=0.863 GT:AD:DP:GQ:PL 0/1:167,155:322:99:3521,0,3789 1 144866662 rs1064044 T C 3335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.789;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=2.012;SOR=0.714 GT:AD:DP:GQ:PL 0/1:162,147:309:99:3364,0,3522 1 144868170 rs1628310 C T 2010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.54;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.319;SOR=0.961 GT:AD:DP:GQ:PL 0/1:121,88:209:99:2039,0,3112 1 144871738 rs1698605 C A 3781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.453;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.316;SOR=0.703 GT:AD:DP:GQ:PGT:PID:PL 0/1:175,106:281:99:0|1:144871738_C_A:3810,0,7961 1 144871755 rs1778159 A T 3768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.697;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-2.181;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 0/1:173,106:279:99:0|1:144871738_C_A:3797,0,7987 1 144871782 rs1778158 A G 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.458;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.29;ReadPosRankSum=-0.866;SOR=0.672 GT:AD:DP:GQ:PL 0/1:179,100:279:99:2062,0,4190 1 144871889 rs1698606 A C 1271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.194;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.248;SOR=0.844 GT:AD:DP:GQ:PL 0/1:64,50:114:99:1300,0,1674 1 144873887 rs1699787 C T 2851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.95;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=3.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.95;SOR=0.942 GT:AD:DP:GQ:PL 0/1:131,114:245:99:2880,0,3153 1 144874038 rs1419160 T C 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.395;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=0.438;SOR=0.796 GT:AD:DP:GQ:PL 0/1:80,97:177:99:2677,0,1942 1 144874760 rs1610774 T C 2878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.448;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.424;SOR=0.551 GT:AD:DP:GQ:PL 0/1:114,111:225:99:2907,0,2515 1 144874815 rs1778155 T C 2598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-1.424;QD=11.71;ReadPosRankSum=-2.157;SOR=0.66 GT:AD:DP:GQ:PL 0/1:112,110:222:99:2627,0,2687 1 144877176 rs2762875 C T 1713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.18;MQRankSum=-7.604;QD=10.32;ReadPosRankSum=0.999;SOR=0.724 GT:AD:DP:GQ:PL 0/1:92,74:166:99:1742,0,2346 1 144879090 rs1778120 T C 2947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.672;SOR=0.679 GT:AD:DP:GQ:PL 0/1:129,115:244:99:2976,0,3204 1 144879264 rs2798901 A G 8780.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=29.27;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,300:300:99:8809,899,0 1 144879375 rs1747958 T C 3085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.454;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-1.411;QD=12.44;ReadPosRankSum=-2.138;SOR=0.602 GT:AD:DP:GQ:PL 0/1:124,124:248:99:3114,0,2938 1 144880832 rs12568796 T C 2415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.826;SOR=0.595 GT:AD:DP:GQ:PL 0/1:121,108:229:99:2444,0,2889 1 144882581 rs1699836 A G 3356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.954;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=-0.96;QD=11.66;ReadPosRankSum=0.332;SOR=0.891 GT:AD:DP:GQ:PL 0/1:153,135:288:99:3385,0,3808 1 144882823 rs1698647 C T 3396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.067;SOR=0.678 GT:AD:DP:GQ:PL 0/1:128,143:271:99:3425,0,3059 1 144886092 rs1343472 C T 1367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.425;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.144;SOR=0.749 GT:AD:DP:GQ:PL 0/1:51,58:109:99:1396,0,1365 1 144886197 rs1698624 A T 2331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=3.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.04;ReadPosRankSum=1.096;SOR=1.014 GT:AD:DP:GQ:PL 0/1:64,91:155:99:2360,0,1542 1 144912153 rs1628172 A G 3610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=6.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.96;ReadPosRankSum=1.304;SOR=0.975 GT:AD:DP:GQ:PL 0/1:57,144:201:99:3639,0,1175 1 144912233 rs1629011 C T 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=0.852;SOR=0.782 GT:AD:DP:GQ:PL 0/1:119,78:197:99:1806,0,2931 1 144915561 rs1778111 G A 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=58.99;MQRankSum=-4.928;QD=8.63;ReadPosRankSum=1.457;SOR=0.762 GT:AD:DP:GQ:PL 0/1:129,82:211:99:1849,0,3361 1 144915624 rs1778112 G A 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.5;MQ=58.65;MQRankSum=-4.992;QD=9.43;ReadPosRankSum=-0.289;SOR=0.774 GT:AD:DP:GQ:PL 0/1:109,82:191:99:1830,0,2733 1 144916748 rs1747930 C G 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=5.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.411;SOR=1.276 GT:AD:DP:GQ:PL 0/1:54,42:96:99:1031,0,1417 1 144917546 rs1698682 A G 2374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.491;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.441;SOR=0.961 GT:AD:DP:GQ:PL 0/1:106,100:206:99:2403,0,2406 1 144917841 rs1698681 T C 2089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.664;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.5;MQ=54.06;MQRankSum=-2.019;QD=13.75;ReadPosRankSum=0.148;SOR=0.683 GT:AD:DP:GQ:PL 0/1:65,87:152:99:2118,0,1412 1 144918957 rs1061308 T A 1907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.351;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-2.482;QD=10.66;ReadPosRankSum=-0.232;SOR=1.074 GT:AD:DP:GQ:PL 0/1:98,81:179:99:1936,0,2351 1 144922171 rs1343470 C T 1147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.647;SOR=0.834 GT:AD:DP:GQ:PL 0/1:68,51:119:99:1176,0,1666 1 144922583 rs1359300 G A 1990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.324;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-1.628;SOR=0.716 GT:AD:DP:GQ:PL 0/1:85,86:171:99:2019,0,1969 1 144923823 rs11268079 TAGGAAGAAACGGCA T 3325.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.882;QD=29.17;ReadPosRankSum=1.449;SOR=0.892 GT:AD:DP:GQ:PL 0/1:31,83:114:99:3363,0,1142 1 144930571 rs2762866 C A 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.839;SOR=1.085 GT:AD:DP:GQ:PL 0/1:83,91:174:99:2373,0,2091 1 144930596 rs2762867 C A 2689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=0.025;SOR=0.902 GT:AD:DP:GQ:PL 0/1:91,107:198:99:2718,0,2210 1 144930802 rs146001390 T G 930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.62;ReadPosRankSum=-0.216;SOR=0.74 GT:AD:DP:GQ:PL 0/1:203,54:257:99:959,0,5411 1 144930940 rs2147326 T C 3372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.556;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=0.878;SOR=0.572 GT:AD:DP:GQ:PL 0/1:136,133:269:99:3401,0,3586 1 144931087 rs41315684 T C 3687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=15.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-3.645;SOR=0.504 GT:AD:DP:GQ:PL 0/1:145,152:297:99:3716,0,3570 1 144931330 rs2762745 C T 3159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=5.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.025;SOR=0.886 GT:AD:DP:GQ:PL 0/1:147,126:273:99:3188,0,3942 1 144931392 rs2798893 G A 3818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.183;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.989;SOR=0.719 GT:AD:DP:GQ:PL 0/1:148,158:306:99:3847,0,3982 1 144931461 rs41315685 A T 4438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.283;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=1.287;SOR=0.607 GT:AD:DP:GQ:PL 0/1:156,180:336:99:4467,0,3719 1 144952220 rs139438772 C T 1957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.87;MQRankSum=-6.141;QD=6.06;ReadPosRankSum=-0.211;SOR=0.675 GT:AD:DP:GQ:PL 0/1:216,107:323:99:1986,0,5151 1 145015877 rs77741369 G T 1724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.77;ReadPosRankSum=-0.034;SOR=0.869 GT:AD:DP:GQ:PL 0/1:213,86:299:99:1753,0,5719 1 145016020 rs657162 T G 6613.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.95;ReadPosRankSum=-1.147;SOR=0.511 GT:AD:DP:GQ:PL 1/1:1,206:207:99:6642,582,0 1 145075683 rs2762779 C T 2549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=425;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6;ReadPosRankSum=0.782;SOR=0.522 GT:AD:DP:GQ:PL 0/1:298,127:425:99:2578,0,7880 1 145075854 rs1663853 G C 1758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.651;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=4.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.86;ReadPosRankSum=0.168;SOR=0.473 GT:AD:DP:GQ:PL 0/1:214,86:300:99:1787,0,6256 1 145103928 rs2596251 G A 203.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.127;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.75;ReadPosRankSum=0.156;SOR=0.78 GT:AD:DP:GQ:PL 0/1:236,34:270:99:232,0,6294 1 145103947 rs2794062 T C 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.872;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.27;ReadPosRankSum=0.504;SOR=0.86 GT:AD:DP:GQ:PL 0/1:216,74:290:99:1557,0,5225 1 145109549 rs2596331 G T 1034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0;DB;DP=455;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.28;ReadPosRankSum=0.094;SOR=0.815 GT:AD:DP:GQ:PL 0/1:369,85:454:99:1063,0,10054 1 145109583 rs2794053 C A 4819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0;DB;DP=500;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=1.315;SOR=0.885 GT:AD:DP:GQ:PL 0/1:283,216:499:99:4848,0,6845 1 145109661 rs2655551 G A 2336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DB;DP=496;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.72;ReadPosRankSum=-0.276;SOR=0.748 GT:AD:DP:GQ:PL 0/1:364,131:495:99:2365,0,9492 1 145112414 rs2590131 T C 5443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=0;DB;DP=517;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1.168;SOR=0.725 GT:AD:DP:GQ:PL 0/1:337,178:515:99:5472,0,10468 1 145112420 rs2794041 C T 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0;DB;DP=532;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.39;ReadPosRankSum=0.981;SOR=0.738 GT:AD:DP:GQ:PL 0/1:389,141:530:99:2357,0,12813 1 145112428 rs2794040 C T 1865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.209;ClippingRankSum=0;DB;DP=519;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.61;ReadPosRankSum=-0.952;SOR=0.74 GT:AD:DP:GQ:PL 0/1:395,122:517:99:1894,0,15793 1 145112485 rs2794039 C T 1633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.25;ReadPosRankSum=2.126;SOR=0.76 GT:AD:DP:GQ:PL 0/1:393,109:502:99:1662,0,10701 1 145115810 rs2655557 A G 8330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0;DB;DP=556;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.04;ReadPosRankSum=-0.182;SOR=0.793 GT:AD:DP:GQ:PL 0/1:287,267:554:99:8359,0,6602 1 145115820 rs2655558 T C 2587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.554;ClippingRankSum=0;DB;DP=554;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.69;ReadPosRankSum=-0.33;SOR=0.875 GT:AD:DP:GQ:PL 0/1:406,146:552:99:2616,0,16988 1 145281543 rs8002 C T 4986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.305;ClippingRankSum=0;DB;DP=777;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=56.83;MQRankSum=-2.883;QD=6.42;ReadPosRankSum=1.392;SOR=0.649 GT:AD:DP:GQ:PL 0/1:531,246:777:99:5015,0,14508 1 145456732 . G GA 41.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.349;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.79;ReadPosRankSum=-0.158;SOR=0.726 GT:AD:DP:GQ:PL 0/1:44,9:55:79:79,0,844 1 145532549 rs1328584 T C 4374.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4403,417,0 1 145533175 rs11590105 T C 5410.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5439,513,0 1 145535921 rs2274617 T C 6141.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.75;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,182:182:99:6170,546,0 1 145558824 rs17352281 A C 3732.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=1.217 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3761,360,0 1 145561116 rs11578772 G A 6062.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6091,584,0 1 145562293 rs11579366 G C 9636.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.986;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.39;ReadPosRankSum=-0.643;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,306:307:99:9665,911,0 1 145601861 rs9286837 G A 2096.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.59;SOR=1.194 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2125,228,0 1 146643555 rs1348316 A G 6417.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.087 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6446,620,0 1 146643580 rs34838459 G A 2628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.861;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.861;SOR=0.563 GT:AD:DP:GQ:PL 0/1:121,114:235:99:2657,0,3142 1 146672906 rs894469 C T 1836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=1.056;SOR=0.771 GT:AD:DP:GQ:PL 0/1:66,73:139:99:1865,0,1711 1 146680394 rs6684454 C T 866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=2.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=1.497;SOR=0.446 GT:AD:DP:GQ:PL 0/1:35,39:74:99:895,0,895 1 146714392 rs1890042 G T 2796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=0.985;SOR=0.663 GT:AD:DP:GQ:PL 0/1:80,117:197:99:2825,0,1847 1 146714427 rs11588753 G C 1713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=1.658;SOR=0.703 GT:AD:DP:GQ:PL 0/1:135,79:214:99:1742,0,3461 1 146724408 rs3737845 G A 524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.237;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.5;ReadPosRankSum=1.033;SOR=0.662 GT:AD:DP:GQ:PL 0/1:44,26:70:99:553,0,1058 1 146736092 rs4950315 C T 1093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=1.506;SOR=0.652 GT:AD:DP:GQ:PL 0/1:57,51:108:99:1122,0,1339 1 146736137 rs36008075 A G 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.061;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.764;SOR=0.496 GT:AD:DP:GQ:PL 0/1:69,57:126:99:1339,0,1723 1 146740502 rs17356233 C G 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.874;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.833;SOR=0.633 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1474,0,1290 1 146751782 rs7547279 A C 5598.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5627,566,0 1 146759306 rs6703892 T C 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.254;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.56;ReadPosRankSum=-1.055;SOR=0.646 GT:AD:DP:GQ:PL 0/1:28,66:94:99:1679,0,483 1 146759320 rs2275249 C G 721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.56;ReadPosRankSum=-1.789;SOR=0.795 GT:AD:DP:GQ:PL 0/1:71,39:110:99:750,0,1689 1 146767149 rs4950394 G T 3175.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,111:113:99:3204,333,0 1 147087721 rs3737843 T A 2867.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2896,303,0 1 147121977 rs6593795 C T 4239.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4268,454,0 1 147124310 rs2153463 T G 6946.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.49;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.34;ReadPosRankSum=2.351;SOR=0.245 GT:AD:DP:GQ:PL 1/1:1,228:229:99:6975,651,0 1 147381397 rs34123490 G GA 331.19 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.762;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=0.747;QD=17.43;ReadPosRankSum=0.977;SOR=1.609 GT:AD:DP:GQ:PL 0/1:4,15:23:28:363,0,28 1 147597237 rs200802363 G A 675.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=5.206;MLEAC=1;MLEAF=0.5;MQ=38.64;MQRankSum=2.141;QD=6.56;ReadPosRankSum=-1.287;SOR=1.226 GT:AD:DP:GQ:PL 0/1:68,35:103:99:704,0,1652 1 147955246 rs202020039 C T 62.74 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24;QD=31.37;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:147955246_C_T:90,6,0 1 147955256 rs199950315 A G 62.74 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24;QD=31.37;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:147955246_C_T:90,6,0 1 148004567 rs79517418 C A 198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.21;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.5;MQ=45.93;MQRankSum=-3.471;QD=3.37;ReadPosRankSum=-3.529;SOR=0.832 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,9:59:99:0|1:148004567_C_A:227,0,2062 1 148004568 rs78765201 C A 198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.286;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.5;MQ=45.93;MQRankSum=-3.471;QD=3.37;ReadPosRankSum=-3.423;SOR=0.832 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,9:59:99:0|1:148004567_C_A:227,0,2062 1 148004584 rs78822109 G A 157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.46;MQRankSum=-3.391;QD=2.54;ReadPosRankSum=-2.388;SOR=0.709 GT:AD:DP:GQ:PL 0/1:49,13:62:99:186,0,1056 1 148004625 rs144324257 C A 217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.5;MQ=45.14;MQRankSum=-3.032;QD=4.84;ReadPosRankSum=4.957;SOR=0.272 GT:AD:DP:GQ:PL 0/1:31,14:45:99:246,0,771 1 148004644 rs199511253 A G 216.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.527;ClippingRankSum=0;DB;DP=20;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.5;MQ=33.22;MQRankSum=1.288;QD=10.84;ReadPosRankSum=-3.761;SOR=1.863 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,7:20:99:0|1:148004644_A_G:245,0,547 1 148004649 rs201407717 C G 184.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.427;ClippingRankSum=0;DB;DP=19;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=32.09;MQRankSum=0.849;QD=9.72;ReadPosRankSum=-3.621;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,6:19:99:0|1:148004644_A_G:213,0,528 1 148010911 rs201061774 G A 15962.8 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.123;ClippingRankSum=0;DB;DP=770;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.95;MQRankSum=-0.059;QD=20.73;ReadPosRankSum=-1.045;SOR=0.648 GT:AD:DP:GQ:PL 0/1:107,663:770:99:15991,0,782 1 148017629 rs79250984 C T 705.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.033;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.5;MQ=37.68;MQRankSum=1.388;QD=8.5;ReadPosRankSum=-1.236;SOR=0.356 GT:AD:DP:GQ:PL 0/1:46,37:83:99:734,0,1021 1 148022966 rs79004754 A G 325.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.521;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=5.493;MLEAC=1;MLEAF=0.5;MQ=25.64;MQRankSum=0.885;QD=6.79;ReadPosRankSum=0.183;SOR=2.428 GT:AD:DP:GQ:PL 0/1:31,17:48:99:354,0,723 1 148023129 rs202128472 C G 452.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.5;MQ=30.67;MQRankSum=0.112;QD=2.66;ReadPosRankSum=-1.383;SOR=0.9 GT:AD:DP:GQ:PL 0/1:131,39:170:99:481,0,3053 1 148024842 rs199813623 C A 379.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.522;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.69;MQRankSum=-0.462;QD=5.75;ReadPosRankSum=1.107;SOR=0.752 GT:AD:DP:GQ:PL 0/1:44,22:66:99:408,0,1006 1 148024903 rs75510304 C T 193.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.5;MQ=31.94;MQRankSum=-0.352;QD=5.1;ReadPosRankSum=1.5;SOR=1.39 GT:AD:DP:GQ:PL 0/1:26,12:38:99:222,0,618 1 148025763 rs200725260 G A 270.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.5;MQ=38.26;MQRankSum=-4.048;QD=2.17;ReadPosRankSum=3.114;SOR=0.693 GT:AD:DP:GQ:PL 0/1:98,27:125:99:299,0,2061 1 148025797 rs201925335 T A 277.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=38.33;MQRankSum=-4.179;QD=2.39;ReadPosRankSum=-1.563;SOR=0.543 GT:AD:DP:GQ:PL 0/1:91,25:116:99:306,0,1961 1 148644408 rs200516190 A G 13461.8 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DB;DP=515;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.78;MQRankSum=2.024;QD=26.24;ReadPosRankSum=-1.111;SOR=0.839 GT:AD:DP:GQ:PL 1/1:2,511:513:99:13490,1480,0 1 149905279 rs72692821 G A 2480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.532;SOR=0.73 GT:AD:DP:GQ:PL 0/1:109,109:218:99:2509,0,2616 1 149906413 rs11205303 T C 1286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=2.727;SOR=0.744 GT:AD:DP:GQ:PL 0/1:76,57:133:99:1315,0,1781 1 149908108 rs1868992 A G 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.114;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-1.622;SOR=0.495 GT:AD:DP:GQ:PL 0/1:105,101:206:99:2503,0,2498 1 149916596 . C G 1925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0;DP=168;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.648;SOR=0.495 GT:AD:DP:GQ:PL 0/1:88,80:168:99:1954,0,2382 1 150122493 rs4553237 T C 2125.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.97;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2154,227,0 1 150199039 rs56692627 CTCCTCT C 784.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.078;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=4.955;MLEAC=1;MLEAF=0.5;MQ=61.25;MQRankSum=4.659;QD=11.37;ReadPosRankSum=-0.314;SOR=1.247 GT:AD:DP:GQ:PL 0/1:45,24:69:99:822,0,2147 1 150199123 rs7522034 G T 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.124;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=3.011;QD=8.79;ReadPosRankSum=-0.051;SOR=0.818 GT:AD:DP:GQ:PL 0/1:60,42:102:99:925,0,1444 1 150256879 rs137955605 G A 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=0.535;SOR=0.849 GT:AD:DP:GQ:PL 0/1:85,61:146:99:1411,0,2043 1 150258838 rs1122967 C G 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.527;SOR=0.799 GT:AD:DP:GQ:PL 0/1:71,64:135:99:1576,0,1881 1 150280550 rs4845 G A 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.133;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=1.146;SOR=0.744 GT:AD:DP:GQ:PL 0/1:94,104:198:99:2489,0,2167 1 150437215 rs66513313 A G 1352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.081;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=7.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-1.946;SOR=1.436 GT:AD:DP:GQ:PL 0/1:56,53:109:99:1381,0,1324 1 150471156 rs34542152 C T 2016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.668;SOR=0.849 GT:AD:DP:GQ:PL 0/1:93,81:174:99:2045,0,2508 1 150484004 rs11801190 G A 3331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=-2.166;SOR=0.751 GT:AD:DP:GQ:PL 0/1:100,136:236:99:3360,0,2399 1 150526044 rs41317515 G C 2918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=5.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.397;SOR=0.726 GT:AD:DP:GQ:PL 0/1:130,125:255:99:2947,0,3095 1 150531008 rs10888382 T C 9774.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9803,941,0 1 150531050 rs10749657 G A 8971.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,303:303:99:9000,905,0 1 150531170 rs10749658 C T 6100.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6129,607,0 1 150679033 rs1336900 G A 1176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.288;SOR=0.735 GT:AD:DP:GQ:PL 0/1:42,46:88:99:1205,0,1074 1 150727539 rs2230061 G A 1539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.505;SOR=0.783 GT:AD:DP:GQ:PL 0/1:90,72:162:99:1568,0,2151 1 150771703 rs10788796 T C 2151.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2180,222,0 1 150808889 rs2228099 C G 2007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.143;SOR=0.563 GT:AD:DP:GQ:PL 0/1:83,81:164:99:2036,0,2037 1 150938616 rs267739 G A 3432.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.238 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3461,345,0 1 150940357 rs6656535 G T 680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.037;SOR=0.963 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,21:59:99:0|1:150940357_G_T:709,0,2236 1 150940358 rs59988025 C T 680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.442;SOR=0.874 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,20:58:99:0|1:150940357_G_T:709,0,2236 1 150941381 rs752376 C T 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.007;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.7;SOR=0.668 GT:AD:DP:GQ:PL 0/1:83,66:149:99:1550,0,2082 1 150970577 rs2925741 G T 5760.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5789,568,0 1 150975108 rs771205 T C 7277.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.862;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.71;ReadPosRankSum=2.42;SOR=0.752 GT:AD:DP:GQ:PL 1/1:2,243:245:99:7306,698,0 1 151006539 rs3738476 C A 7443.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7472,737,0 1 151019180 rs6587553 A G 2515.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2544,257,0 1 151026815 rs2902810 C T 1724.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1753,177,0 1 151104950 rs10788800 G A 9156.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9185,891,0 1 151105824 rs4971006 C G 7175.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7204,704,0 1 151108137 rs4971007 T G 5798.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5827,588,0 1 151209063 rs12407426 C T 2547.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=31.07;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2576,245,0 1 151239051 rs7489 T C 5627.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5656,570,0 1 151288172 rs1056847 G A 3957.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3986,401,0 1 151288391 rs1752379 A G 4079.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4108,414,0 1 151315287 rs2233854 G C 3940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.541;SOR=0.685 GT:AD:DP:GQ:PL 0/1:175,161:336:99:3969,0,4513 1 151316161 rs1752386 G A 4439.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=1.435 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4468,428,0 1 151341570 rs41284998 C T 2769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=1.216;SOR=0.634 GT:AD:DP:GQ:PL 0/1:125,123:248:99:2798,0,3029 1 151372138 rs7172 G A 6652.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6681,680,0 1 151381320 rs3831142 GA G 2391.73 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=26.87;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2429,267,0 1 151396037 rs2274534 A C 2324.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.58 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2353,233,0 1 151508061 rs11204842 A C 2180.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.519 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2209,226,0 1 151551320 rs3748608 G A 3340.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3369,345,0 1 151739679 rs201902593 C A 1390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.541;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.131;SOR=0.759 GT:AD:DP:GQ:PL 0/1:55,59:114:99:1419,0,1192 1 151811226 rs6673556 G A 8529.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8558,854,0 1 151820298 rs6587624 G C 8227.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,256:256:99:8256,768,0 1 151820324 rs6587625 T C 3037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-1.104;SOR=0.64 GT:AD:DP:GQ:PL 0/1:144,126:270:99:3066,0,3621 1 151867560 rs3762427 G A 1887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=58.88;MQRankSum=0.764;QD=12.26;ReadPosRankSum=-0.286;SOR=0.791 GT:AD:DP:GQ:PL 0/1:70,84:154:99:1916,0,1574 1 151881885 rs3748805 A C 2272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.68;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=0.169;SOR=0.696 GT:AD:DP:GQ:PL 0/1:131,107:238:99:2301,0,3054 1 152079989 rs1131471 T G 8214.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,261:261:99:8243,782,0 1 152081921 rs2496253 G C 8264.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8293,789,0 1 152084175 . T TTGCTGCTCGCGCCTCTCC 6266.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0;DP=636;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.023;QD=13.03;ReadPosRankSum=-0.022;SOR=0.759 GT:AD:DP:GQ:PL 0/1:247,234:481:99:6304,0,9420 1 152084984 rs3134814 C G 4269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=1.735;SOR=0.662 GT:AD:DP:GQ:PL 0/1:148,162:310:99:4298,0,3866 1 152085505 rs2515663 A C 4829.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.193 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4858,475,0 1 152127455 rs75957773 T C 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.642;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-1.399;SOR=0.659 GT:AD:DP:GQ:PL 0/1:112,94:206:99:2325,0,2733 1 152129065 . GTGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA G 2888.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DP=209;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-1.733;QD=14.59;ReadPosRankSum=1.754;SOR=0.807 GT:AD:DP:GQ:PL 0/1:119,79:198:99:2926,0,20375 1 152185762 rs41266112 C G 6665.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.96;QD=44.14;SOR=0.706 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,151:151:99:1|1:152185762_C_G:6694,455,0 1 152185768 rs41266114 T G 6518.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.88;QD=46.56;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,140:140:99:1|1:152185762_C_G:6547,442,0 1 152185774 rs61814932 A G 5911.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.76;QD=46.55;SOR=0.741 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,127:127:99:1|1:152185762_C_G:5940,397,0 1 152185780 rs41266116 G A 5416.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.63;QD=47.1;SOR=0.859 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,115:115:99:1|1:152185762_C_G:5445,364,0 1 152185790 rs76102381 T C 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.52;QD=47.03;SOR=1.044 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,97:97:99:1|1:152185762_C_G:4590,307,0 1 152185792 rs74493243 G A 4336.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.37;QD=49.28;SOR=1.312 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,88:88:99:1|1:152185762_C_G:4365,292,0 1 152185796 rs41266118 A G 3661.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.13;QD=47.56;SOR=1.463 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,77:77:99:1|1:152185762_C_G:3690,247,0 1 152185812 . C CAG 1582.73 PASS AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.99;QD=45.22;SOR=2.115 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,35:35:99:1|1:152185762_C_G:1620,108,0 1 152185817 . CCA C 862.73 PASS AC=2;AF=1;AN=2;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.41;QD=45.41;SOR=5.994 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,19:19:60:1|1:152185762_C_G:900,60,0 1 152185823 rs41266120 C T 736.77 SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.63;QD=56.67;SOR=5.283 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,13:13:51:1|1:152185762_C_G:765,51,0 1 152186042 rs12751022 A G 173.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.53;QD=34.78;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,5:5:15:202,15,0 1 152186699 . T A 671.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DP=447;ExcessHet=3.0103;FS=45.929;MLEAC=1;MLEAF=0.5;MQ=31.35;MQRankSum=7.108;QD=1.5;ReadPosRankSum=-6.12;SOR=2.426 GT:AD:DP:GQ:PL 0/1:380,67:447:99:700,0,8600 1 152186766 rs4845747 G A 4149.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-8.269;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=43.883;MLEAC=1;MLEAF=0.5;MQ=33.99;MQRankSum=6.092;QD=13.22;ReadPosRankSum=8.695;SOR=0.11 GT:AD:DP:GQ:PL 0/1:120,194:314:99:4178,0,2604 1 152187562 rs61814936 A C 15668.8 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0;DB;DP=547;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.12;MQRankSum=-1.807;QD=28.7;ReadPosRankSum=-0.723;SOR=0.886 GT:AD:DP:GQ:PL 1/1:1,545:546:99:15697,1600,0 1 152187619 rs80264994 A G 1346.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0;DB;DP=1115;ExcessHet=3.0103;FS=9.267;MLEAC=1;MLEAF=0.5;MQ=36.65;MQRankSum=-0.854;QD=1.21;ReadPosRankSum=-2.904;SOR=1.359 GT:AD:DP:GQ:PL 0/1:937,176:1113:99:1375,0,21539 1 152187657 rs61814937 C T 6428.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.71;ClippingRankSum=0;DB;DP=1209;ExcessHet=3.0103;FS=6.611;MLEAC=1;MLEAF=0.5;MQ=36.86;MQRankSum=-4.262;QD=5.32;ReadPosRankSum=-2.106;SOR=1.132 GT:AD:DP:GQ:PL 0/1:827,382:1209:99:6457,0,17593 1 152187810 rs145371085 G A 1579.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.23;QD=28.72;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1608,165,0 1 152187935 rs61814938 C T 618.77 SNP_MQ_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=13.064;MLEAC=1;MLEAF=0.5;MQ=35.58;MQRankSum=3.144;QD=2.74;ReadPosRankSum=-8.423;SOR=1.39 GT:AD:DP:GQ:PGT:PID:PL 0/1:197,29:226:99:0|1:152187935_C_T:647,0,9412 1 152187945 rs61814939 C T 937.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=18.301;MLEAC=1;MLEAF=0.5;MQ=36.27;MQRankSum=4.594;QD=4.17;ReadPosRankSum=-4.323;SOR=1.406 GT:AD:DP:GQ:PGT:PID:PL 0/1:184,41:225:99:0|1:152187935_C_T:966,0,9158 1 152188109 rs61814940 T A 826.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.946;ClippingRankSum=0;DB;DP=474;ExcessHet=3.0103;FS=50.066;MLEAC=1;MLEAF=0.5;MQ=41.33;MQRankSum=-3.921;QD=1.74;ReadPosRankSum=4.373;SOR=0.966 GT:AD:DP:GQ:PL 0/1:398,76:474:99:855,0,11681 1 152188176 rs147618491 G A 6991.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.557;ClippingRankSum=0;DB;DP=1089;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.5;MQ=43.94;MQRankSum=-7.192;QD=6.43;ReadPosRankSum=-0.479;SOR=0.894 GT:AD:DP:GQ:PL 0/1:742,346:1088:99:7020,0,17204 1 152188961 rs76879172 C T 4940.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0;DB;DP=591;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=32.56;MQRankSum=0.252;QD=8.36;ReadPosRankSum=1.174;SOR=0.756 GT:AD:DP:GQ:PL 0/1:341,250:591:99:4969,0,7671 1 152188998 rs80018286 C T 3093.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.751;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=2.896;MLEAC=1;MLEAF=0.5;MQ=31.29;MQRankSum=0.601;QD=8.94;ReadPosRankSum=-0.504;SOR=0.91 GT:AD:DP:GQ:PL 0/1:204,142:346:99:3122,0,4890 1 152189029 rs76438416 A G 2090.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.702;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=3.301;MLEAC=1;MLEAF=0.5;MQ=30.7;MQRankSum=0.752;QD=9.13;ReadPosRankSum=-1.308;SOR=1.024 GT:AD:DP:GQ:PL 0/1:134,95:229:99:2119,0,3236 1 152189055 rs4845749 G C 3766.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.87;QD=28.98;SOR=6.091 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3795,390,0 1 152189272 . G A 42.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24;MQRankSum=-0;QD=8.55;ReadPosRankSum=0.674;SOR=1.022 GT:AD:DP:GQ:PL 0/1:2,3:5:42:71,0,42 1 152190720 rs7514457 C T 3434.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.54;QD=30.67;SOR=9.455 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3463,337,0 1 152191709 rs6662450 C G 10053.8 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,320:320:99:10082,960,0 1 152191879 rs10788828 G A 10294.8 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,326:326:99:10323,974,0 1 152192114 rs7520249 C T 14718.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-3.514;ClippingRankSum=0;DB;DP=531;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.25;MQRankSum=17.363;QD=27.77;ReadPosRankSum=7.916;SOR=0.8 GT:AD:DP:GQ:PL 1/1:22,508:530:99:14747,837,0 1 152192293 rs7520375 C T 14671.8 PASS AC=2;AF=1;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.51;QD=30.89;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,475:475:99:14700,1424,0 1 152192549 rs12145941 T G 6013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=476;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.708;SOR=0.709 GT:AD:DP:GQ:PL 0/1:233,243:476:99:6042,0,5786 1 152192631 rs6587647 C T 20607.8 PASS AC=2;AF=1;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=39.4;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,523:523:99:1|1:152192631_C_T:20636,1590,0 1 152192687 rs6587648 T C 18630.8 PASS AC=2;AF=1;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=41.77;SOR=0.767 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,446:446:99:1|1:152192631_C_T:18659,1362,0 1 152192978 rs6587649 T C 8558.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.7;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,254:254:99:8587,763,0 1 152193052 rs6587650 A G 7219.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,221:221:99:7248,663,0 1 152193121 rs6587651 G T 9763.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9792,921,0 1 152193291 rs6587652 G T 14334.8 PASS AC=2;AF=1;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=30.76;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,466:466:99:14363,1397,0 1 152193544 rs7535536 A G 8939.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.61;SOR=1.173 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,205:205:99:1|1:152193544_A_G:8968,626,0 1 152193547 rs6587653 G A 8872.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=47.45;SOR=1.197 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,187:187:99:1|1:152193544_A_G:8901,620,0 1 152193851 rs11204937 C T 3775.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3804,372,0 1 152195728 rs34061715 AT A 1964.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.526;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.673;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.85;ReadPosRankSum=1.448;SOR=0.3 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2002,205,0 1 152278049 rs2065958 A C 196.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.737;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=55.659;MLEAC=1;MLEAF=0.5;MQ=41.56;MQRankSum=-2.784;QD=0.76;ReadPosRankSum=-0.613;SOR=5.998 GT:AD:DP:GQ:PL 0/1:234,24:258:99:225,0,5611 1 152278434 rs61816760 T G 1215.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.144;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.93;MQRankSum=0.881;QD=16.65;ReadPosRankSum=0.245;SOR=0.569 GT:AD:DP:GQ:PL 0/1:39,34:73:99:1244,0,1232 1 152281621 rs34806697 T C 7822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DB;DP=530;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-0.92;QD=14.84;ReadPosRankSum=0.569;SOR=0.844 GT:AD:DP:GQ:PL 0/1:214,313:527:99:7851,0,5000 1 152281724 rs149817134 G T 3680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.27;ClippingRankSum=0;DB;DP=437;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.757;QD=8.42;ReadPosRankSum=0.768;SOR=0.749 GT:AD:DP:GQ:PL 0/1:279,158:437:99:3709,0,7868 1 152323132 rs12568784 G T 1949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.198;SOR=0.719 GT:AD:DP:GQ:PL 0/1:83,82:165:99:1978,0,2192 1 152325732 rs12022217 G A 4166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.79;ClippingRankSum=0;DB;DP=389;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0.558;QD=10.74;ReadPosRankSum=0.702;SOR=0.739 GT:AD:DP:GQ:PL 0/1:196,192:388:99:4195,0,4633 1 152327469 rs76514540 C T 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=7.458;MLEAC=1;MLEAF=0.5;MQ=59.08;MQRankSum=-5.746;QD=8.55;ReadPosRankSum=-0.818;SOR=0.992 GT:AD:DP:GQ:PL 0/1:191,78:269:99:2327,0,5700 1 152327502 rs138997916 A G 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.346;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.5;MQ=58.81;MQRankSum=-7.396;QD=3.38;ReadPosRankSum=-4.861;SOR=0.592 GT:AD:DP:GQ:PGT:PID:PL 0/1:191,39:230:99:0|1:152327502_A_G:805,0,10408 1 152328411 rs6679449 A G 4349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=8.247;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.34;MQRankSum=-7.078;QD=10.66;ReadPosRankSum=-0.409;SOR=0.688 GT:AD:DP:GQ:PL 0/1:254,154:408:99:4378,0,6414 1 152329369 rs2282302 C G 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.845;SOR=0.816 GT:AD:DP:GQ:PL 0/1:85,79:164:99:2183,0,2421 1 152329435 rs2282303 C T 1887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=0.955;SOR=0.633 GT:AD:DP:GQ:PL 0/1:62,72:134:99:1916,0,1682 1 152331240 rs3818831 G A 1592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=6.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=1.662;SOR=0.315 GT:AD:DP:GQ:PL 0/1:62,65:127:99:1621,0,1639 1 152382062 rs10888486 C T 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.505;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.103;SOR=0.559 GT:AD:DP:GQ:PL 0/1:84,88:172:99:2128,0,1877 1 152382120 rs3829868 C T 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.324;SOR=0.635 GT:AD:DP:GQ:PL 0/1:77,81:158:99:2065,0,2021 1 152484129 rs2105117 G A 9338.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.381 GT:AD:DP:GQ:PL 1/1:0,306:306:99:9367,918,0 1 152487979 rs2282296 C T 5506.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5535,534,0 1 152488063 rs1053588 C T 6235.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6264,591,0 1 152552285 rs512208 C A 4862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.854;ClippingRankSum=0;DB;DP=409;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.5;MQ=56.91;MQRankSum=-1.912;QD=11.92;ReadPosRankSum=-0.047;SOR=0.865 GT:AD:DP:GQ:PL 0/1:208,200:408:99:4891,0,5784 1 152636843 rs9793541 A T 6177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.926;ClippingRankSum=0;DB;DP=543;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-0.333;QD=11.44;ReadPosRankSum=1.545;SOR=0.733 GT:AD:DP:GQ:PL 0/1:255,285:540:99:6206,0,6076 1 152681543 rs1332496 T C 2845.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.09;SOR=1.995 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2874,257,0 1 152681680 rs6143428 C CAGCTCTGGGGGCTGCTGT 8958.73 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=47.4;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,189:189:99:8996,606,0 1 152692074 rs1332500 G C 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.42;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=1.695;SOR=0.642 GT:AD:DP:GQ:PL 0/1:76,66:142:99:1637,0,2045 1 152692472 rs873775 A C 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.952;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=6.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=2.366;SOR=0.389 GT:AD:DP:GQ:PL 0/1:96,94:190:99:2552,0,2490 1 152692588 rs944682 A G 2685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.789;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=5.163;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.636;SOR=0.478 GT:AD:DP:GQ:PL 0/1:130,115:245:99:2714,0,3073 1 152732436 rs4845480 G C 4741.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.63;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4770,423,0 1 152733301 rs4329520 T A 5862.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5891,537,0 1 152759950 rs11205106 A G 6492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0;DB;DP=544;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-3.344;QD=11.98;ReadPosRankSum=-1.114;SOR=0.552 GT:AD:DP:GQ:PL 0/1:284,258:542:99:6521,0,7133 1 152777868 rs36107483 A G 2558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.753;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=5.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-1.264;QD=8.36;ReadPosRankSum=0.125;SOR=0.999 GT:AD:DP:GQ:PL 0/1:189,117:306:99:2587,0,4901 1 152777964 rs17624493 G A 2077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.78;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.361;QD=7.61;ReadPosRankSum=-1.109;SOR=0.674 GT:AD:DP:GQ:PL 0/1:178,95:273:99:2106,0,4573 1 152882610 rs2229496 A G 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.319;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=1.187;SOR=0.763 GT:AD:DP:GQ:PL 0/1:104,92:196:99:2736,0,2750 1 152882982 . C CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG 2067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0;DP=653;ExcessHet=3.0103;FS=7.267;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=-4.052;QD=5.89;ReadPosRankSum=6.305;SOR=1.636 GT:AD:DP:GQ:PL 0/1:336,15:351:99:2096,0,5389 1 152883608 rs7545413 G A 3548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.316;SOR=0.691 GT:AD:DP:GQ:PL 0/1:152,143:295:99:3577,0,4159 1 152883680 rs7535306 A G 3549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.354;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-0.466;SOR=0.623 GT:AD:DP:GQ:PL 0/1:135,134:269:99:3578,0,3056 1 152883711 rs7545520 G C 3182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.873;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=3.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-0.764;SOR=0.495 GT:AD:DP:GQ:PL 0/1:123,117:240:99:3211,0,3132 1 152944594 rs3170863 C T 7186.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7215,734,0 1 152957832 rs1611762 C A 14645.8 PASS AC=2;AF=1;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=30.2;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,485:485:99:14674,1450,0 1 152957887 rs1611764 G A 14536.8 PASS AC=2;AF=1;AN=2;DB;DP=488;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=29.97;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,485:485:99:14565,1452,0 1 152975495 rs2075739 G A 4209.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.95;SOR=2.049 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4238,373,0 1 152975658 rs67156933 AGAGCCAGGCTGTACCAAGGTCCCT A 5513.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.703;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.86;MQRankSum=3.342;QD=29.97;ReadPosRankSum=0.076;SOR=0.738 GT:AD:DP:GQ:PL 1/1:4,180:184:99:5551,327,0 1 152975763 rs1977734 C A 16724.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.017;ClippingRankSum=0;DB;DP=604;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.74;MQRankSum=0.438;QD=35.66;ReadPosRankSum=-1.503;SOR=0.723 GT:AD:DP:GQ:PGT:PID:PL 1/1:2,467:469:99:1|1:152975763_C_A:16753,1266,0 1 152975829 rs1970328 A G 16646.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.32;ClippingRankSum=0;DB;DP=455;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;MQRankSum=5.996;QD=36.67;ReadPosRankSum=0.813;SOR=0.28 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,453:454:99:1|1:152975763_C_A:16675,1325,0 1 152975941 rs1055935 C G 9613.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9642,893,0 1 153004809 rs3181787 T C 6606.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.23;SOR=1.573 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6635,580,0 1 153004848 rs3795381 T C 12637.8 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.46;SOR=1.374 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,278:278:99:1|1:153004848_T_C:12666,861,0 1 153004853 rs3795382 C T 12791.8 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.96;SOR=1.263 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,291:291:99:1|1:153004848_T_C:12820,878,0 1 153004983 rs12195 C T 14119.8 PASS AC=2;AF=1;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.18;QD=31.31;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,451:451:99:14148,1353,0 1 153029137 rs3737864 C T 9898.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.43;QD=33.44;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,296:296:99:9927,886,0 1 153043332 rs11589984 G A 1079.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.77;QD=34.83;SOR=6.932 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1108,93,0 1 153233510 rs6661601 A G 3792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.198;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.332;SOR=0.484 GT:AD:DP:GQ:PL 0/1:129,159:288:99:3821,0,2912 1 153233991 rs11272549 A ACTCTGGCGGCGG 3768.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.73;MQRankSum=4.69;QD=13.46;ReadPosRankSum=2.088;SOR=0.721 GT:AD:DP:GQ:PL 0/1:138,142:280:99:3806,0,6895 1 153314153 rs3006448 C A 4498.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4527,477,0 1 153315579 rs3014863 A G 2291.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=29.38;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2320,234,0 1 153320372 rs3006458 T G 2374.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2403,244,0 1 153390542 rs3006412 G C 5526.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.8;QD=31.22;SOR=1.231 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5555,530,0 1 153391729 rs3006414 G A 3290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.99;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-3.385;QD=12.66;ReadPosRankSum=0.686;SOR=0.533 GT:AD:DP:GQ:PL 0/1:112,148:260:99:3319,0,2442 1 153391786 rs3014813 T C 3006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.335;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-3.419;QD=12.42;ReadPosRankSum=-0.651;SOR=0.673 GT:AD:DP:GQ:PL 0/1:117,125:242:99:3035,0,2604 1 153410822 rs10888561 C A 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.431;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=10.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-0.885;SOR=2.03 GT:AD:DP:GQ:PL 0/1:47,29:76:99:745,0,1129 1 153412392 rs3006428 T G 861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.534;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.18;SOR=0.646 GT:AD:DP:GQ:PL 0/1:36,33:69:99:890,0,833 1 153431406 rs3014837 C G 6696.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.83;QD=31.15;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6725,645,0 1 153509890 rs3795393 T C 2016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.048;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.148;SOR=0.666 GT:AD:DP:GQ:PL 0/1:84,85:169:99:2045,0,2060 1 153588340 rs11548103 C T 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.254;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=5.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-2.213;SOR=1.263 GT:AD:DP:GQ:PL 0/1:61,47:108:99:1260,0,1520 1 153636860 rs4351684 A G 749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-1.813;SOR=0.725 GT:AD:DP:GQ:PL 0/1:56,38:94:99:778,0,1367 1 153660514 rs11295572 AC A 1878.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.569;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=8.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=-0.144;SOR=1.423 GT:AD:DP:GQ:PL 0/1:48,74:122:99:1916,0,1129 1 153790501 rs4363451 C T 2608.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=1.116 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2637,264,0 1 153907278 rs3835302 CCTGCTGCTG C 9969.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.192;ClippingRankSum=0;DB;DP=417;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.36;MQRankSum=0.957;QD=28.73;ReadPosRankSum=-0.194;SOR=0.807 GT:AD:DP:GQ:PL 1/1:8,339:359:99:10007,634,0 1 153909069 rs1043608 G C 8622.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8651,867,0 1 153913699 rs1110165 T G 5858.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.48;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5887,525,0 1 153913770 rs2252508 A G 7073.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,221:221:99:7102,662,0 1 153926078 rs11264680 T C 2312.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2341,221,0 1 153941514 rs11264743 C T 4126.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.5;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4155,393,0 1 153994647 rs11264875 C T 3604.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=1.215 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3633,372,0 1 154108387 rs3001361 G A 2213.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2242,216,0 1 154110733 rs11318139 GA G 1925.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.991;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.66;ReadPosRankSum=-0.893;SOR=0.156 GT:AD:DP:GQ:PL 1/1:2,83:87:99:1963,184,0 1 154186918 rs12408458 G C 2113.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2142,216,0 1 154227292 rs11412846 G GT 1081.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.91;ReadPosRankSum=0.091;SOR=0.839 GT:AD:DP:GQ:PL 0/1:20,48:95:99:1119,0,237 1 154293675 rs6668968 G A 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-0.584;QD=11.12;ReadPosRankSum=-1.681;SOR=0.652 GT:AD:DP:GQ:PL 0/1:73,67:140:99:1585,0,1863 1 154295592 rs6685323 C T 3027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.979;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=4.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=1.185;SOR=0.544 GT:AD:DP:GQ:PL 0/1:114,130:244:99:3056,0,3036 1 154303976 rs6702754 T C 2299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.75;ReadPosRankSum=-1.335;SOR=0.501 GT:AD:DP:GQ:PL 0/1:52,94:146:99:2328,0,1171 1 154305190 rs12077870 G C 834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.751;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.88;ReadPosRankSum=0.833;SOR=0.626 GT:AD:DP:GQ:PL 0/1:65,41:106:99:863,0,1491 1 154310048 rs1760795 C G 3075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-0.102;SOR=0.716 GT:AD:DP:GQ:PL 0/1:105,119:224:99:3104,0,2783 1 154316434 rs2274988 C T 2712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-1.685;SOR=0.762 GT:AD:DP:GQ:PL 0/1:111,113:224:99:2741,0,2773 1 154317153 rs1194587 C T 1925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.085;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.47;SOR=0.562 GT:AD:DP:GQ:PL 0/1:82,78:160:99:1954,0,2108 1 154401679 rs2228144 G A 1347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.246;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=0.401;SOR=0.749 GT:AD:DP:GQ:PL 0/1:87,56:143:99:1376,0,2150 1 154426947 rs4845374 T A 313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.831;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.253;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.61;ReadPosRankSum=-0.945;SOR=1.112 GT:AD:DP:GQ:PL 0/1:46,22:68:99:342,0,1072 1 154426970 rs2228145 A C 1201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=1.23;SOR=0.409 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1230,0,950 1 154474131 rs4845635 C G 3548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.172;SOR=0.854 GT:AD:DP:GQ:PL 0/1:162,151:313:99:3577,0,4035 1 154516477 rs12750774 G A 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.175;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=2.513;SOR=0.933 GT:AD:DP:GQ:PL 0/1:92,99:191:99:2439,0,2195 1 154516571 rs6678164 T C 6915.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6944,680,0 1 154557685 rs9427094 C T 1659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.329;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=1.77;SOR=0.613 GT:AD:DP:GQ:PL 0/1:108,75:183:99:1688,0,2958 1 154561925 rs1127309 C T 1059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=3.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=-0.367;SOR=0.4 GT:AD:DP:GQ:PL 0/1:32,46:78:99:1088,0,834 1 154573967 rs2229857 T C 2567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.69;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=4.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.619;SOR=0.835 GT:AD:DP:GQ:PL 0/1:101,100:201:99:2596,0,2447 1 154574820 rs1466731 T C 8327.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8356,793,0 1 154575040 rs1802645 C T 5448.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5477,534,0 1 154744807 rs1051614 C G 5734.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5763,558,0 1 154744852 rs1131820 A G 4573.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4602,435,0 1 154842199 rs3831942 G GGCT,GGCTGCTGCT 9888.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.063;ClippingRankSum=0;DB;DP=477;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.16;MQRankSum=0;QD=29.97;ReadPosRankSum=1.849;SOR=0.774 GT:AD:DP:GQ:PL 1/2:26,182,122:370:99:9926,4500,4811,4545,0,7572 1 154904840 rs1891805 T C 726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.425;SOR=0.653 GT:AD:DP:GQ:PL 0/1:34,33:67:99:755,0,846 1 154919080 rs2061690 C T 2491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=6.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.102;SOR=0.393 GT:AD:DP:GQ:PL 0/1:103,100:203:99:2520,0,2606 1 154938235 rs1131397 G C 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=1.548;SOR=0.831 GT:AD:DP:GQ:PL 0/1:82,81:163:99:2048,0,2103 1 154938662 rs8191979 T C 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.908;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=1.491;SOR=0.527 GT:AD:DP:GQ:PL 0/1:73,63:136:99:1557,0,1850 1 154965113 rs7535144 G T 1958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.482;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=5.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-0.717;SOR=0.411 GT:AD:DP:GQ:PL 0/1:83,87:170:99:1987,0,2088 1 155026942 rs6427128 A C 6524.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6553,598,0 1 155030557 rs11264303 A C 10212.8 PASS AC=2;AF=1;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,345:345:99:10241,1033,0 1 155032670 . TC T 4299.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.182;ClippingRankSum=0;DP=278;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.58;ReadPosRankSum=-0.147;SOR=0.665 GT:AD:DP:GQ:PL 0/1:138,138:276:99:4337,0,4298 1 155033308 rs11589479 G A 2054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.503;SOR=0.559 GT:AD:DP:GQ:PL 0/1:74,90:164:99:2083,0,2786 1 155033317 rs11264304 T C 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.26;SOR=0.815 GT:AD:DP:GQ:PL 0/1:84,69:153:99:1551,0,3333 1 155106054 rs4390169 A G 1898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.324;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=6.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=-1.468;SOR=0.802 GT:AD:DP:GQ:PL 0/1:54,77:131:99:1927,0,1196 1 155106227 rs4745 A T 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.018;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.14;ReadPosRankSum=-0.135;SOR=0.673 GT:AD:DP:GQ:PL 0/1:54,76:130:99:1996,0,1233 1 155106550 rs9297 A G 1941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.002;SOR=0.494 GT:AD:DP:GQ:PL 0/1:83,91:174:99:1970,0,1901 1 155149718 rs3814316 G A 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.205;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.289;SOR=0.494 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1683,0,2063 1 155162067 rs4072037 C T 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.683;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.299;SOR=0.91 GT:AD:DP:GQ:PL 0/1:86,67:153:99:1640,0,2095 1 155178782 rs760077 A T 4289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.751;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=9.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.351;SOR=0.911 GT:AD:DP:GQ:PL 0/1:217,169:386:99:4318,0,5323 1 155182164 rs2075570 C T 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.5;MQ=57.05;MQRankSum=-0.428;QD=12.96;ReadPosRankSum=-0.382;SOR=0.582 GT:AD:DP:GQ:PL 0/1:58,61:119:99:1570,0,1705 1 155230131 rs1142287 C T 1641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-0.212;SOR=0.561 GT:AD:DP:GQ:PL 0/1:97,66:163:99:1670,0,2554 1 155231545 rs2242576 T G 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.319;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.861;SOR=0.682 GT:AD:DP:GQ:PL 0/1:39,41:80:99:1024,0,899 1 155257818 rs35001694 C T 2446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.407;SOR=0.683 GT:AD:DP:GQ:PL 0/1:144,102:246:99:2475,0,3769 1 155260350 rs1052177 A G 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.237;SOR=0.588 GT:AD:DP:GQ:PL 0/1:32,39:71:99:920,0,738 1 155260383 rs1052176 G T 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.402;SOR=0.52 GT:AD:DP:GQ:PL 0/1:40,42:82:99:1021,0,938 1 155290261 rs61740152 T A 1427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.196;SOR=0.718 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1456,0,1572 1 155294274 rs914616 A G 7624.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.35;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,222:222:99:7653,666,0 1 155408600 rs145984528 T C 3281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.392;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=-0.122;SOR=0.58 GT:AD:DP:GQ:PL 0/1:112,129:241:99:3310,0,2468 1 155408635 rs4971053 T C 7004.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7033,686,0 1 155581757 rs145150302 A G 413.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.82;QD=31.83;SOR=5.283 GT:AD:DP:GQ:PL 1/1:0,13:13:39:442,39,0 1 155583937 rs147713038 A G 346.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.213;ClippingRankSum=0;DB;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.84;MQRankSum=0.153;QD=18.25;ReadPosRankSum=-0.047;SOR=0.223 GT:AD:DP:GQ:PL 0/1:9,10:19:99:375,0,245 1 155658085 rs2666826 T C 4057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.544;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=-1.072;SOR=0.613 GT:AD:DP:GQ:PL 0/1:122,145:267:99:4086,0,2849 1 155735012 rs2297775 T C 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.005;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.803;SOR=0.82 GT:AD:DP:GQ:PL 0/1:84,64:148:99:1694,0,2190 1 155785578 rs375366111 CAACT C 2172.73 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=43.45;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,50:50:99:2210,151,0 1 155837865 rs822522 G C 5322.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5351,534,0 1 155838267 rs822521 T C 7248.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.111 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7277,693,0 1 155870416 rs1749409 G A 2864.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=1.533 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2893,273,0 1 155880573 rs493446 C G 5895.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5924,588,0 1 155903408 rs4661151 C T 962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.063;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=7.434;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-0.905;QD=15.53;ReadPosRankSum=-1.943;SOR=1.678 GT:AD:DP:GQ:PL 0/1:29,33:62:99:991,0,746 1 155904177 rs2275079 T C 3261.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3290,312,0 1 155912486 rs2152051 T C 6187.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6216,582,0 1 156011444 rs2297792 T C 2366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.839;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=58.44;MQRankSum=-4.821;QD=10.71;ReadPosRankSum=-1.19;SOR=0.861 GT:AD:DP:GQ:PL 0/1:122,99:221:99:2395,0,3024 1 156107534 rs4641 C T 1916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.723;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-1.255;SOR=0.79 GT:AD:DP:GQ:PL 0/1:93,84:177:99:1945,0,2057 1 156146218 rs12401573 C T 1131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.39;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.054;SOR=0.798 GT:AD:DP:GQ:PL 0/1:54,48:102:99:1160,0,1467 1 156206155 rs140410413 C T 3844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.701;SOR=0.569 GT:AD:DP:GQ:PL 0/1:192,179:371:99:3873,0,4301 1 156206181 rs11540816 C T 3872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.925;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-1.576;SOR=0.708 GT:AD:DP:GQ:PL 0/1:165,160:325:99:3901,0,3824 1 156215562 rs2075166 G A 6442.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6471,643,0 1 156215899 rs2075165 G A 10519.8 PASS AC=2;AF=1;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.065 GT:AD:DP:GQ:PL 1/1:0,362:362:99:10548,1082,0 1 156230429 rs12139321 A G 4015.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.86;SOR=2.1 GT:AD:DP:GQ:PL 1/1:0,112:112:99:4044,336,0 1 156233189 rs2273833 C T 5661.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5690,579,0 1 156255456 rs6684514 G A 10102.8 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,317:317:99:10131,950,0 1 156263097 rs10908494 A G 7264.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.43;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7293,671,0 1 156263940 rs10908495 T C 6297.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6326,630,0 1 156264000 rs10908496 G A 5092.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5121,488,0 1 156347131 rs2245623 G A 2279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=6.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.343;SOR=1.1 GT:AD:DP:GQ:PL 0/1:131,96:227:99:2308,0,3328 1 156347834 rs11586833 T A 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.92;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0;QD=12.29;ReadPosRankSum=1;SOR=0.566 GT:AD:DP:GQ:PL 0/1:101,108:209:99:2597,0,2467 1 156351699 rs3748569 G A 1958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.271;SOR=0.674 GT:AD:DP:GQ:PL 0/1:109,83:192:99:1987,0,2768 1 156354367 rs6668857 A G 2276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.331;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-1.395;SOR=0.582 GT:AD:DP:GQ:PL 0/1:85,97:182:99:2305,0,1862 1 156446903 rs2274317 T C 2623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.263;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=4.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.896;SOR=0.983 GT:AD:DP:GQ:PL 0/1:110,108:218:99:2652,0,2618 1 156450740 rs1925950 G A 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=0.625;SOR=0.504 GT:AD:DP:GQ:PL 0/1:128,90:218:99:1976,0,3504 1 156499969 rs1171566 T C 2805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.433;SOR=0.581 GT:AD:DP:GQ:PL 0/1:97,124:221:99:2834,0,2194 1 156503947 rs6661934 G A 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.33;ReadPosRankSum=0.574;SOR=0.602 GT:AD:DP:GQ:PL 0/1:103,64:167:99:1420,0,2659 1 156518379 rs744224 G A 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.207;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.402;SOR=0.548 GT:AD:DP:GQ:PL 0/1:102,81:183:99:1926,0,2571 1 156526387 rs11264498 C G 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.434;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-2.65;SOR=0.716 GT:AD:DP:GQ:PL 0/1:84,85:169:99:1828,0,2194 1 156526444 rs2488269 T C 5380.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5409,543,0 1 156532908 rs16837492 C A 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=4.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.506;SOR=1.135 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1379,0,1469 1 156532977 rs1171547 T C 5789.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5818,587,0 1 156536221 rs2066377 G C 4920.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4949,495,0 1 156536251 rs947662 T C 5017.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5046,495,0 1 156536353 rs947663 A G 3055.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3084,300,0 1 156539154 rs6427319 T C 2556.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.79;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2585,276,0 1 156551848 rs6682716 A G 5993.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.226 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6022,591,0 1 156556321 rs10796961 G A 4563.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4592,450,0 1 156561651 rs7516274 G C 4522.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=30.98;SOR=1.626 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4551,438,0 1 156562008 rs1925949 G A 4830.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4859,473,0 1 156562143 rs942959 G A 3974.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4003,387,0 1 156563726 rs6427322 A C 6543.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=1.195 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6572,621,0 1 156563813 rs6668178 G A 6149.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=30.9;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6178,597,0 1 156563852 rs942963 C T 5041.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=30.01;SOR=1.595 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5070,499,0 1 156565049 rs72559129 A AAC 6820.73 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=44.58;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,153:153:99:6858,463,0 1 156639753 rs11582300 G A 5754.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.483 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5783,547,0 1 156640156 rs3748570 G A 7561.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7590,702,0 1 156640678 rs2886443 G A 3098.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.635;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=14.506;MLEAC=2;MLEAF=1;MQ=60.09;MQRankSum=-7.616;QD=25.82;ReadPosRankSum=2.292;SOR=2.993 GT:AD:DP:GQ:PL 1/1:2,118:120:99:3127,259,0 1 156646668 rs4278369 A G 5450.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5479,519,0 1 156705593 rs4311877 G C 5302.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5331,548,0 1 156706559 rs8658 A G 3171.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3200,315,0 1 156713512 rs4437869 C T 3876.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3905,395,0 1 156713558 rs4399146 G A 3281.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3310,315,0 1 156784982 rs926103 T C 2820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.69;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.25;ReadPosRankSum=1.187;SOR=0.758 GT:AD:DP:GQ:PL 0/1:79,106:185:99:2849,0,1727 1 156785617 rs1800601 G A 1507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.871;QD=13.23;ReadPosRankSum=-1.145;SOR=0.667 GT:AD:DP:GQ:PL 0/1:48,66:114:99:1536,0,1192 1 156785779 rs1800600 G A 2231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.526;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.34;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.181;QD=15.5;ReadPosRankSum=0.251;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,61:144:99:0|1:156785762_AG_A:2260,0,3556 1 156810772 . G A 2450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.016;ClippingRankSum=0;DP=201;ExcessHet=3.0103;FS=5.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.821;SOR=0.966 GT:AD:DP:GQ:PL 0/1:101,100:201:99:2479,0,2177 1 156815921 rs12064115 C T 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.472;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-2.612;SOR=0.945 GT:AD:DP:GQ:PL 0/1:86,76:162:99:1669,0,2241 1 156848995 rs6337 C T 6869.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6898,684,0 1 156875097 rs4661075 G A 5476.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.41;SOR=1.131 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:156875097_G_A:5505,373,0 1 156875107 rs2644590 C A 5781.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.15;SOR=1.196 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,134:134:99:1|1:156875097_G_A:5810,406,0 1 156877457 rs1952294 T C 7559.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.63;ReadPosRankSum=-0.658;SOR=0.336 GT:AD:DP:GQ:PL 1/1:1,238:239:99:7588,678,0 1 157062696 rs1176537 G T 2739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=1.702;SOR=0.835 GT:AD:DP:GQ:PL 0/1:136,115:251:99:2768,0,3654 1 157508882 rs6427384 C T 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=1.37;SOR=0.621 GT:AD:DP:GQ:PL 0/1:101,113:214:99:2574,0,2381 1 157509025 rs2012199 C T 1751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=10.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.065;SOR=1.341 GT:AD:DP:GQ:PL 0/1:96,71:167:99:1780,0,2563 1 157514091 rs12036228 C T 2883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.247;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.69;ReadPosRankSum=0.201;SOR=0.703 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,76:163:99:0|1:157514091_C_T:2912,0,3950 1 157514097 rs6679793 A G 2838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.076;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17;ReadPosRankSum=0.871;SOR=0.622 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,75:167:99:0|1:157514091_C_T:2867,0,4080 1 157557701 rs2777962 G A 629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.945;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.56;ReadPosRankSum=0.112;SOR=1.006 GT:AD:DP:GQ:PL 0/1:65,31:96:99:658,0,1602 1 157567751 rs1361889 A G 2281.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2310,243,0 1 157648543 rs2282284 T C 3303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.36;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=0.097;SOR=0.558 GT:AD:DP:GQ:PL 0/1:143,136:279:99:3332,0,3239 1 157668390 rs7522061 T C 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.232;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.401;SOR=0.504 GT:AD:DP:GQ:PL 0/1:61,69:130:99:1575,0,1318 1 157670290 rs945635 C G 2973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.043;SOR=0.7 GT:AD:DP:GQ:PL 0/1:90,127:217:99:3002,0,2028 1 157771880 rs4971154 C T 6102.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6131,617,0 1 157802979 rs2261295 C T 2836.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=2.174 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2865,267,0 1 158054379 rs927662 A G 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-0.658;SOR=0.953 GT:AD:DP:GQ:PL 0/1:85,67:152:99:1521,0,2249 1 158057633 rs36008419 C G 4531.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4560,472,0 1 158436299 rs4657080 T C 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.521;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=1.228;SOR=0.551 GT:AD:DP:GQ:PL 0/1:33,35:68:99:941,0,790 1 158450314 rs6679056 A G 1362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.633;SOR=0.56 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1391,0,1377 1 158450382 rs1418843 C T 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.433;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.345;SOR=0.77 GT:AD:DP:GQ:PL 0/1:46,52:98:99:1227,0,1304 1 158517142 rs41273491 C T 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.268;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=1.184;SOR=0.996 GT:AD:DP:GQ:PL 0/1:85,58:143:99:1358,0,2059 1 158517353 rs16840314 G A 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.608;SOR=0.839 GT:AD:DP:GQ:PL 0/1:59,48:107:99:1175,0,1540 1 158532614 rs41273499 G A 1407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.78;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.167;SOR=0.816 GT:AD:DP:GQ:PL 0/1:81,62:143:99:1436,0,2150 1 158533140 rs12080815 A G 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.521;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-1.279;SOR=0.949 GT:AD:DP:GQ:PL 0/1:81,65:146:99:1570,0,2075 1 158533224 rs12081915 A G 1318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.522;SOR=0.494 GT:AD:DP:GQ:PL 0/1:70,57:127:99:1347,0,1759 1 158549264 rs863360 G A 1604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-1.803;SOR=0.91 GT:AD:DP:GQ:PL 0/1:68,69:137:99:1633,0,1681 1 158549420 rs863361 C T 1563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=6.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-1.057;SOR=0.376 GT:AD:DP:GQ:PL 0/1:88,64:152:99:1592,0,2352 1 158549492 rs863362 C T 1601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.39;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=1.313;SOR=0.512 GT:AD:DP:GQ:PL 0/1:98,76:174:99:1630,0,2284 1 158549511 rs863363 A G 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.39;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.519;SOR=0.603 GT:AD:DP:GQ:PL 0/1:91,78:169:99:1637,0,2154 1 158577109 rs857685 A C 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.313;SOR=0.785 GT:AD:DP:GQ:PL 0/1:74,61:135:99:1486,0,1816 1 158582646 rs2251969 T C 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.069;SOR=0.799 GT:AD:DP:GQ:PL 0/1:58,65:123:99:1491,0,1307 1 158584091 rs952094 A G 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=1.387;QD=13.19;ReadPosRankSum=-0.904;SOR=0.569 GT:AD:DP:GQ:PL 0/1:28,46:74:99:1004,0,1079 1 158584103 rs57778257 G GAA 1419.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.39;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=1.309;QD=28.39;ReadPosRankSum=0.628;SOR=0.954 GT:AD:DP:GQ:PL 0/1:22,28:63:99:1457,0,526 1 158587390 rs857716 C T 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.05;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.267;SOR=0.81 GT:AD:DP:GQ:PL 0/1:39,39:78:99:916,0,893 1 158607935 rs857725 T G 1995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.916;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.25;SOR=0.718 GT:AD:DP:GQ:PL 0/1:94,84:178:99:2024,0,2243 1 158612236 rs863931 A G 2699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-1.727;SOR=0.535 GT:AD:DP:GQ:PL 0/1:93,113:206:99:2728,0,2209 1 158618455 rs2246434 G A 1171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.359;SOR=0.837 GT:AD:DP:GQ:PL 0/1:55,46:101:99:1200,0,1613 1 158619728 rs2482965 A C 2284.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.6;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2313,204,0 1 158626378 rs857691 C T 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=5.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.904;SOR=0.794 GT:AD:DP:GQ:PL 0/1:54,61:115:99:1379,0,1200 1 158631171 rs2518493 A C 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.794;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.138;SOR=0.866 GT:AD:DP:GQ:PL 0/1:86,82:168:99:2059,0,1945 1 158637865 rs140998442 GAAA G 1357.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.154;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=7.283;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.679;QD=25.14;ReadPosRankSum=-1.097;SOR=1.483 GT:AD:DP:GQ:PL 0/1:21,33:71:99:1395,0,759 1 158644105 rs703116 T A 984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.483;SOR=0.659 GT:AD:DP:GQ:PL 0/1:45,44:89:99:1013,0,1013 1 158647495 rs325996 A T 5257.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5286,531,0 1 158647522 rs703121 A G 2047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.507;SOR=0.633 GT:AD:DP:GQ:PL 0/1:89,85:174:99:2076,0,2118 1 158647631 rs325995 T A 4129.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4158,428,0 1 158655036 rs435080 G A 6028.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6057,615,0 1 158656281 rs2564858 T C 1648.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1677,171,0 1 158687163 rs28568406 G A 1270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.01;SOR=0.559 GT:AD:DP:GQ:PL 0/1:53,51:104:99:1299,0,1231 1 158687224 rs857703 G A 1243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.308;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=1.275;SOR=0.852 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1272,0,1296 1 158735595 rs857824 C T 4560.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4589,440,0 1 158735691 rs857825 T C 4902.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4931,489,0 1 158735740 rs857826 A G 4746.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.67;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4775,424,0 1 158735892 rs857827 A G 5137.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5166,486,0 1 158736215 rs6666753 G A 3817.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3846,387,0 1 158986477 rs866484 G C 4655.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4684,444,0 1 159002301 rs2518553 T C 2325.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.82;ReadPosRankSum=-0.588;SOR=0.604 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2354,194,0 1 159002377 rs1057027 C A 3547.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3576,369,0 1 159002389 rs1057028 T A 3411.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3440,354,0 1 159175354 rs12075 G A 6331.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6360,635,0 1 159409533 rs10908721 G A 2118.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=1.681 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2147,198,0 1 159409734 rs10908722 G T 5125.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5154,486,0 1 159409857 rs12048482 A G 2321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.66;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=-1.924;SOR=0.806 GT:AD:DP:GQ:PL 0/1:77,85:162:99:2350,0,1869 1 159410340 rs12409540 T A 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=2.75;SOR=0.781 GT:AD:DP:GQ:PL 0/1:89,72:161:99:1654,0,2182 1 159505101 rs35393723 G A 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.823;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.612;SOR=0.696 GT:AD:DP:GQ:PL 0/1:79,58:137:99:1510,0,2009 1 159505297 rs4656837 C T 2053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-0.342;SOR=0.75 GT:AD:DP:GQ:PL 0/1:80,82:162:99:2082,0,2045 1 159558258 rs2808661 A G 2199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.621;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.571;SOR=0.874 GT:AD:DP:GQ:PL 0/1:110,94:204:99:2228,0,2674 1 159799910 rs34687326 G A 3460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=1.018;SOR=0.639 GT:AD:DP:GQ:PL 0/1:145,148:293:99:3489,0,3488 1 159824967 rs2501340 G C 10063.8 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,296:296:99:10092,888,0 1 159860259 rs2501320 G A 962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.98;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=0.444;SOR=0.351 GT:AD:DP:GQ:PL 0/1:59,41:100:99:991,0,1521 1 159897126 rs13052 C T 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.628;SOR=0.658 GT:AD:DP:GQ:PL 0/1:90,81:171:99:1735,0,2299 1 159897681 rs142211405 TAA T 2030.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.945;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=4.921;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=0.856;QD=24.47;ReadPosRankSum=1.898;SOR=0.772 GT:AD:DP:GQ:PL 0/1:19,64:128:99:2068,0,654 1 159898100 rs3747615 A G 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.042;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.201;SOR=0.626 GT:AD:DP:GQ:PL 0/1:115,117:232:99:3034,0,2860 1 159923111 rs2789417 T G 3642.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.04;SOR=1.699 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3671,321,0 1 160000435 rs12409352 A T 2017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.714;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.745;SOR=0.612 GT:AD:DP:GQ:PL 0/1:112,86:198:99:2046,0,2754 1 160011512 rs1130183 G A 1829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=0.589;SOR=0.776 GT:AD:DP:GQ:PL 0/1:58,73:131:99:1858,0,1473 1 160057522 rs3001040 C T 591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.725;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=8.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=1.034;SOR=2.883 GT:AD:DP:GQ:PL 0/1:31,22:53:99:620,0,1109 1 160062340 rs41265757 G A 2885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=1.051;SOR=0.83 GT:AD:DP:GQ:PL 0/1:109,121:230:99:2914,0,2802 1 160062472 rs2295622 C T 1831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=1.29;SOR=0.752 GT:AD:DP:GQ:PL 0/1:82,80:162:99:1860,0,2127 1 160062727 rs2295621 A G 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.164;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-2.354;SOR=0.738 GT:AD:DP:GQ:PL 0/1:92,90:182:99:2294,0,2074 1 160090681 rs67915591 CCCTT C 7054.73 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.61;QD=44.09;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,160:160:99:7092,482,0 1 160093222 rs2820581 C T 5043.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.538 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5072,492,0 1 160105367 rs17846715 C T 4002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0;DB;DP=412;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-0.002;QD=9.74;ReadPosRankSum=0.205;SOR=0.725 GT:AD:DP:GQ:PL 0/1:234,177:411:99:4031,0,6021 1 160109788 rs41288127 C T 1962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.294;SOR=0.873 GT:AD:DP:GQ:PL 0/1:82,92:174:99:1991,0,1804 1 160121899 rs77332724 A G 1688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-0.622;SOR=0.969 GT:AD:DP:GQ:PL 0/1:95,76:171:99:1717,0,2397 1 160124875 rs6427504 G A 4192.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4221,431,0 1 160134205 rs11265338 C T 3873.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3902,381,0 1 160141196 rs625549 C T 5405.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5434,566,0 1 160151624 rs36097870 G GC 7755.73 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=33.43;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7793,704,0 1 160265515 rs3789042 T C 893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.574;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-2.192;SOR=1.129 GT:AD:DP:GQ:PL 0/1:53,38:91:99:922,0,1389 1 160265668 rs2887489 G C 1273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.236;SOR=0.6 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1302,0,1448 1 160303416 rs1802778 G A 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=0.145;SOR=0.38 GT:AD:DP:GQ:PL 0/1:40,62:102:99:1429,0,893 1 160393905 rs12086448 A G 2850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.666;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=0.307;SOR=0.585 GT:AD:DP:GQ:PL 0/1:100,105:205:99:2879,0,2657 1 160394937 rs17380127 A C 2982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.069;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=5.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.182;SOR=1.016 GT:AD:DP:GQ:PL 0/1:122,121:243:99:3011,0,2760 1 160395003 rs17380141 G A 3087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.029;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=4.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.171;SOR=0.786 GT:AD:DP:GQ:PL 0/1:143,127:270:99:3116,0,3254 1 160650913 rs4656926 A G 4173.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4202,389,0 1 160654758 rs2295615 C G 1297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.156;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=0.709;SOR=0.89 GT:AD:DP:GQ:PL 0/1:69,50:119:99:1326,0,1947 1 160654786 rs1980606 G A 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.003;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.436;SOR=0.735 GT:AD:DP:GQ:PL 0/1:69,53:122:99:1416,0,1873 1 160793442 rs474131 A G 4883.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4912,450,0 1 160793560 rs509749 A G 3497.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3526,336,0 1 160793962 rs506081 G C 3566.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=1.209 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3595,336,0 1 160849082 rs3820094 A G 3495.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.12;SOR=1.048 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,83:83:99:1|1:160849060_G_A:3524,253,0 1 160850936 rs2236515 T C 4087.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.97;SOR=1.553 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4116,372,0 1 160851826 rs2274907 A T 9151.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.71;QD=31.56;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,290:290:99:9180,870,0 1 160851894 rs2274908 G A 8271.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.74;QD=30.52;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8300,808,0 1 160920813 rs790059 A G 14641.8 PASS AC=2;AF=1;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.79;QD=44.23;SOR=1.049 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,331:331:99:1|1:160920809_A_G:14670,996,0 1 160920966 rs6680969 C T 9189.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=30.53;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,301:301:99:9218,901,0 1 160969930 rs869985 A C 3711.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.37;SOR=1.343 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3740,324,0 1 160971146 rs790055 A G 4640.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.97;SOR=1.127 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,108:108:99:1|1:160971146_A_G:4669,325,0 1 160971155 rs2297219 G C 4336.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.71;SOR=1.274 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,97:97:99:1|1:160971146_A_G:4365,292,0 1 161019040 rs3813609 G C 8194.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,259:259:99:8223,777,0 1 161192845 rs57498167 CCA C 327.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=2.663;QD=2.6;ReadPosRankSum=0.629;SOR=0.522 GT:AD:DP:GQ:PL 0/1:101,25:130:99:365,0,2403 1 161476204 rs9427397 C T 7289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.473;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.5;MQ=58.77;MQRankSum=-6.382;QD=20.71;ReadPosRankSum=-1.793;SOR=0.785 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,188:352:99:0|1:161476204_C_T:7318,0,7236 1 161476205 rs9427398 A G 7289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.636;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.5;MQ=58.78;MQRankSum=-6.611;QD=20.42;ReadPosRankSum=-1.422;SOR=0.75 GT:AD:DP:GQ:PGT:PID:PL 0/1:168,189:357:99:0|1:161476204_C_T:7318,0,7236 1 161479599 rs7529425 G A 2021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.544;SOR=0.693 GT:AD:DP:GQ:PL 0/1:84,84:168:99:2050,0,2286 1 161480649 rs11810143 A G 2843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.77;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-0.766;SOR=0.544 GT:AD:DP:GQ:PL 0/1:150,124:274:99:2872,0,3619 1 161495477 rs72633678 A T 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=58.55;MQRankSum=-0.551;QD=10.06;ReadPosRankSum=1.816;SOR=0.734 GT:AD:DP:GQ:PL 0/1:126,103:229:99:2331,0,3232 1 161495885 rs404508 T C 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.097;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-2.394;QD=12.4;ReadPosRankSum=-0.544;SOR=0.676 GT:AD:DP:GQ:PL 0/1:98,87:185:99:2322,0,2483 1 161514542 rs396991 A C 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.912;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.16;MQRankSum=-11.754;QD=9.81;ReadPosRankSum=0.019;SOR=0.722 GT:AD:DP:GQ:PL 0/1:122,97:219:99:2177,0,2597 1 161518214 rs148181339 T C 3200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.772;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.5;MQ=43.45;MQRankSum=-8.672;QD=10.29;ReadPosRankSum=1.425;SOR=0.845 GT:AD:DP:GQ:PL 0/1:170,141:311:99:3229,0,3968 1 161518333 rs10127939 A T 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.259;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=5.476;MLEAC=1;MLEAF=0.5;MQ=52.08;MQRankSum=8.703;QD=6.06;ReadPosRankSum=-2.518;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 0/1:237,99:336:99:0|1:161518333_A_T:2065,0,8324 1 161518336 rs77144485 C T 3127.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.5;MQ=52.37;MQRankSum=-15.691;QD=9.36;ReadPosRankSum=0.412;SOR=0.65 GT:AD:DP:GQ:PGT:PID:PL 0/1:193,141:334:99:1|0:161518333_A_T:3156,0,6607 1 161559571 rs138747765 C T 5265.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.34;QD=29.25;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5294,539,0 1 161565324 rs61801822 C T 2890.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.23;QD=32.48;SOR=2.076 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2919,267,0 1 161565381 rs76277413 A G 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=53.09;MQRankSum=-6.378;QD=6.44;ReadPosRankSum=-1.325;SOR=0.642 GT:AD:DP:GQ:PL 0/1:113,62:175:99:1155,0,2657 1 161600995 rs34085961 C T 4880.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=30.5;SOR=1.439 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4909,479,0 1 161680258 rs6427618 G A 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.351;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=-0.144;SOR=0.633 GT:AD:DP:GQ:PL 0/1:38,51:89:99:1314,0,886 1 161681780 rs2275603 A G 2482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.894;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.112;SOR=0.493 GT:AD:DP:GQ:PL 0/1:97,102:199:99:2511,0,2198 1 161695639 rs7520519 G T 2488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.963;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=5.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.378;SOR=1.092 GT:AD:DP:GQ:PL 0/1:98,87:185:99:2517,0,2488 1 161722204 rs1063179 C T 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.828;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.581;SOR=0.627 GT:AD:DP:GQ:PL 0/1:40,44:84:99:1057,0,962 1 161722272 rs10917852 C A 683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.72;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=6.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.551;SOR=0.359 GT:AD:DP:GQ:PL 0/1:29,31:60:99:712,0,696 1 161823011 rs2257107 T A 703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-1.556;SOR=0.849 GT:AD:DP:GQ:PL 0/1:40,34:74:99:732,0,948 1 161928327 rs9482 A G 4164.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4193,437,0 1 161967681 rs2499836 A G 7101.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7130,699,0 1 161976234 rs12022536 A G 3500.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=29.42;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3529,356,0 1 161976272 rs34863451 G GA 2086.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;MQRankSum=0.265;QD=25.45;ReadPosRankSum=1.137;SOR=0.427 GT:AD:DP:GQ:PL 1/1:4,78:93:99:2124,157,0 1 162313735 rs3751284 C T 4980.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5009,496,0 1 162335256 rs348624 C T 3009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.434;SOR=0.786 GT:AD:DP:GQ:PL 0/1:119,124:243:99:3038,0,3019 1 162344102 rs2282397 C T 4320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=6.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=2.733;SOR=0.993 GT:AD:DP:GQ:PL 0/1:173,166:339:99:4349,0,4576 1 162344390 rs164159 A G 5832.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5861,552,0 1 162345091 rs164181 G A 3857.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3886,387,0 1 162367071 rs17852003 C T 987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=2.319;SOR=0.822 GT:AD:DP:GQ:PL 0/1:54,46:100:99:1016,0,1310 1 162766476 rs1780019 C T 1606.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.58;QD=30.9;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1635,156,0 1 162775267 rs12563263 C T 726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.9;MLEAC=1;MLEAF=0.5;MQ=52.97;MQRankSum=-0.247;QD=10.09;ReadPosRankSum=-0.506;SOR=0.523 GT:AD:DP:GQ:PL 0/1:39,33:72:99:755,0,949 1 163297322 rs16852612 A C 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.355;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=1.14;SOR=0.852 GT:AD:DP:GQ:PL 0/1:39,49:88:99:1133,0,815 1 163313539 rs11802875 C T 497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.96;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=1.744;SOR=0.96 GT:AD:DP:GQ:PL 0/1:34,23:57:99:526,0,920 1 165173216 rs1354509 A G 4806.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4835,503,0 1 165218679 rs9970062 C T 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.411;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.656;SOR=0.536 GT:AD:DP:GQ:PL 0/1:60,76:136:99:1846,0,1594 1 165218792 rs10753668 G A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=1.175;SOR=0.542 GT:AD:DP:GQ:PL 0/1:75,83:158:99:2038,0,1788 1 165376043 rs283696 T C 2415.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2444,254,0 1 165377552 rs2134095 G A 1549.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=1.487 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1578,165,0 1 165389129 rs1128977 G A 3415.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3444,360,0 1 165532746 rs17407838 T A 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.925;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-1.245;SOR=0.789 GT:AD:DP:GQ:PL 0/1:65,47:112:99:1202,0,1755 1 165533005 rs453717 C A 2680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.372;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=3.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.597;SOR=0.978 GT:AD:DP:GQ:PL 0/1:115,110:225:99:2709,0,2821 1 165533075 rs6676948 C T 1879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.263;SOR=0.647 GT:AD:DP:GQ:PL 0/1:71,77:148:99:1908,0,1835 1 165652273 rs1143659 A G 5720.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5749,590,0 1 165712555 rs71826578 GA G 279.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.155;QD=3.83;ReadPosRankSum=-0.228;SOR=0.593 GT:AD:DP:GQ:PL 0/1:50,23:89:99:317,0,1106 1 166818566 rs2075946 A G 2817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.408;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=1.215;SOR=0.596 GT:AD:DP:GQ:PL 0/1:146,118:264:99:2846,0,3534 1 166829517 rs151215751 G A 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.39;SOR=0.62 GT:AD:DP:GQ:PL 0/1:77,80:157:99:1910,0,1803 1 166958601 rs2296837 T C 2823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.625;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=-1.609;SOR=0.871 GT:AD:DP:GQ:PL 0/1:100,105:205:99:2852,0,2242 1 166958710 rs11578336 T G 2904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.115;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=4.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.331;SOR=1.017 GT:AD:DP:GQ:PL 0/1:102,110:212:99:2933,0,2431 1 167042762 rs2274531 C T 785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.29;SOR=0.598 GT:AD:DP:GQ:PL 0/1:34,32:66:99:814,0,829 1 167059462 rs2281963 G C 1487.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1516,156,0 1 167095163 rs267745 G C 2923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.47;ReadPosRankSum=-1.122;SOR=0.646 GT:AD:DP:GQ:PL 0/1:85,104:189:99:2952,0,2322 1 167096931 rs267746 A C 3162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.444;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.284;SOR=0.639 GT:AD:DP:GQ:PL 0/1:121,114:235:99:3191,0,2924 1 167407858 rs33937946 G A 652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.53;ReadPosRankSum=1.188;SOR=0.549 GT:AD:DP:GQ:PL 0/1:64,36:100:99:681,0,1565 1 167802226 rs41270739 C T 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.732;SOR=0.908 GT:AD:DP:GQ:PL 0/1:47,55:102:99:1307,0,1083 1 167815514 rs35398078 G A 1472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.275;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-0.771;SOR=0.641 GT:AD:DP:GQ:PL 0/1:51,64:115:99:1501,0,1107 1 167817639 rs203795 A G 1326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.843;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.826;SOR=0.768 GT:AD:DP:GQ:PL 0/1:54,54:108:99:1355,0,1208 1 167849414 rs203849 A G 1011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.011;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=-3.26;SOR=0.859 GT:AD:DP:GQ:PL 0/1:75,46:121:99:1040,0,1818 1 167865871 rs16859886 G A 452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.19;ReadPosRankSum=-0.021;SOR=0.818 GT:AD:DP:GQ:PL 0/1:40,23:63:99:481,0,1009 1 167871297 rs71735758 GA G 465.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=0;SOR=0.438 GT:AD:DP:GQ:PL 0/1:24,28:58:99:503,0,497 1 167893759 rs9618 G A 579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=0.331;SOR=0.562 GT:AD:DP:GQ:PL 0/1:42,28:70:99:608,0,1008 1 167906239 rs203788 A C 4295.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4324,411,0 1 167973976 rs1060041 C T 1984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.729;SOR=0.555 GT:AD:DP:GQ:PL 0/1:66,85:151:99:2013,0,1550 1 168013850 rs11558511 T C 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.355;SOR=0.811 GT:AD:DP:GQ:PL 0/1:44,34:78:99:803,0,1065 1 168059866 rs275149 A G 1131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.754;SOR=0.602 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1160,0,1292 1 168074145 rs6427119 G A 1120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.355;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.48;ReadPosRankSum=0.093;SOR=1.095 GT:AD:DP:GQ:PL 0/1:27,41:68:99:1149,0,658 1 168165767 rs35234155 CT C 390.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=1.678;SOR=1.044 GT:AD:DP:GQ:PL 0/1:23,22:51:99:428,0,439 1 168200733 rs11588504 T C 1686.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.619;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.19;ReadPosRankSum=1.056;SOR=0.992 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1715,170,0 1 168262522 rs57039241 A AGT 589.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.212;QD=13.11;ReadPosRankSum=-0.72;SOR=0.622 GT:AD:DP:GQ:PL 0/1:25,20:61:99:627,0,587 1 168511284 rs4282797 T C 2034.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.88;QD=29.49;SOR=1.478 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2063,207,0 1 168511321 rs4501820 C T 1103.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.01;QD=40.88;SOR=2.753 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,27:27:81:1|1:168511321_C_T:1132,81,0 1 168511325 rs4301615 G C 1095.77 PASS AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.16;QD=45.66;SOR=2.925 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,24:24:81:1|1:168511321_C_T:1124,81,0 1 168511349 rs4478789 A G 114.9 PASS AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44;QD=22.98;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,5:5:15:143,15,0 1 168513129 rs3820405 C T 7928.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.03;QD=28.62;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,277:277:99:7957,828,0 1 168545864 rs116453184 A G 140.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.524;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=13.031;MLEAC=1;MLEAF=0.5;MQ=57.57;MQRankSum=-10.684;QD=1.1;ReadPosRankSum=-3.579;SOR=2.454 GT:AD:DP:GQ:PL 0/1:112,16:128:99:169,0,2860 1 168545949 rs34933908 G A 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.5;MQ=57.61;MQRankSum=-5.944;QD=6.35;ReadPosRankSum=2.797;SOR=0.752 GT:AD:DP:GQ:PL 0/1:117,59:176:99:1146,0,3036 1 168698173 rs1052591 C T 7824.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,273:273:99:7853,816,0 1 169272451 rs10800427 A T 503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=-2.332;SOR=0.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,15:34:99:0|1:169272451_A_T:532,0,1090 1 169272453 rs10800428 G A 503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.74;ReadPosRankSum=-2.016;SOR=0.446 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,13:32:99:0|1:169272451_A_T:532,0,1090 1 169279196 rs34054662 T TA 315.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=0.367;SOR=0.511 GT:AD:DP:GQ:PL 0/1:20,15:35:99:353,0,429 1 169293721 rs1140523 G A 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=1.594;SOR=0.732 GT:AD:DP:GQ:PL 0/1:36,49:85:99:1129,0,776 1 169390957 rs35107735 A T 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=0.37;SOR=0.786 GT:AD:DP:GQ:PL 0/1:79,54:133:99:1220,0,1997 1 169391154 rs3820059 A G 1832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-1.347;SOR=0.573 GT:AD:DP:GQ:PL 0/1:66,72:138:99:1861,0,1684 1 169484767 rs9332701 A G 2051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.251;SOR=0.783 GT:AD:DP:GQ:PL 0/1:63,88:151:99:2080,0,1463 1 169498834 rs6009 T C 556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=-0.978;SOR=0.559 GT:AD:DP:GQ:PL 0/1:39,28:67:99:585,0,1044 1 169510233 rs9332607 G A 4694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0;DB;DP=472;ExcessHet=3.0103;FS=1.76;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-1.063;QD=9.97;ReadPosRankSum=-0.234;SOR=0.545 GT:AD:DP:GQ:PL 0/1:259,212:471:99:4723,0,6283 1 169519049 rs6025 T C 870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.017;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-1.385;SOR=1.198 GT:AD:DP:GQ:PL 0/1:36,32:68:99:899,0,826 1 169551682 rs6028 T C 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.829;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.668;SOR=0.99 GT:AD:DP:GQ:PL 0/1:28,25:53:99:646,0,634 1 169563951 rs6136 T G 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.093;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.855;SOR=0.879 GT:AD:DP:GQ:PL 0/1:66,56:122:99:1468,0,1539 1 169566313 rs6127 C T 5556.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5585,570,0 1 169580717 rs3917731 T C 1327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.919;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.748;SOR=1.015 GT:AD:DP:GQ:PL 0/1:72,50:122:99:1356,0,1887 1 169673838 rs2229569 G A 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=2.026;SOR=0.53 GT:AD:DP:GQ:PL 0/1:76,73:149:99:1601,0,1752 1 169677709 rs1051091 A G 3473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.211;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=-0.652;SOR=0.576 GT:AD:DP:GQ:PL 0/1:120,137:257:99:3502,0,2645 1 169694918 rs5356 A G 1171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.351;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.464;SOR=0.674 GT:AD:DP:GQ:PL 0/1:63,48:111:99:1200,0,1544 1 169696946 rs5368 G A 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.079;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=0.649;SOR=0.734 GT:AD:DP:GQ:PL 0/1:58,73:131:99:1920,0,1418 1 169698825 rs1534904 T G 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.936;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=1.655;SOR=0.767 GT:AD:DP:GQ:PL 0/1:65,50:115:99:1380,0,1614 1 169702705 rs932307 G A 921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-1.984;SOR=0.858 GT:AD:DP:GQ:PL 0/1:51,40:91:99:950,0,1228 1 169768080 rs6668114 C A 198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.68;ReadPosRankSum=0.257;SOR=0.836 GT:AD:DP:GQ:PL 0/1:22,13:35:99:227,0,588 1 169773317 rs11590604 G A 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=0.608;SOR=0.828 GT:AD:DP:GQ:PL 0/1:57,48:105:99:1034,0,1378 1 169823718 rs4656197 T C 2619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=1.475;SOR=0.696 GT:AD:DP:GQ:PL 0/1:107,113:220:99:2648,0,2439 1 169890933 rs518928 A G 2433.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.281 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2462,237,0 1 169951997 rs33943686 C T 807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=0.137;SOR=0.399 GT:AD:DP:GQ:PL 0/1:21,35:56:99:836,0,499 1 170501385 rs7531125 A C 4769.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.59;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4798,426,0 1 170521376 rs913257 G A 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.66;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-1.75;SOR=0.708 GT:AD:DP:GQ:PL 0/1:81,77:158:99:1811,0,2095 1 170967395 rs151291051 G A 747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.116;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=-1.032;SOR=0.682 GT:AD:DP:GQ:PL 0/1:60,32:92:99:776,0,1566 1 171076966 rs2266782 G A 1212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.311;SOR=0.726 GT:AD:DP:GQ:PL 0/1:56,52:108:99:1241,0,1394 1 171077372 rs2066534 C G 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.235;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-2.519;SOR=0.968 GT:AD:DP:GQ:PL 0/1:60,52:112:99:1260,0,1314 1 171168584 rs2020862 C T 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=10.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.52;ReadPosRankSum=0.292;SOR=0.709 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,57:116:99:0|1:171168584_C_T:2177,0,3289 1 171168585 rs2020861 A G 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=12.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.68;ReadPosRankSum=-0.141;SOR=0.692 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,57:115:99:0|1:171168584_C_T:2177,0,3289 1 171174531 rs2020863 A G 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.784;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.708;SOR=0.638 GT:AD:DP:GQ:PL 0/1:70,61:131:99:1469,0,1702 1 171227216 rs10912675 T C 4232.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.147 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4261,423,0 1 171509327 rs760644 G A 1998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.837;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.424;SOR=0.684 GT:AD:DP:GQ:PL 0/1:75,82:157:99:2027,0,1755 1 171511039 rs1687064 C G 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.419;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=4.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.747;SOR=0.696 GT:AD:DP:GQ:PL 0/1:88,88:176:99:2250,0,2023 1 171514731 rs235468 C G 1364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=1.175;SOR=0.657 GT:AD:DP:GQ:PL 0/1:105,68:173:99:1393,0,2391 1 171526570 rs1687057 G A 350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=1.273;SOR=0.653 GT:AD:DP:GQ:PL 0/1:19,15:34:99:379,0,503 1 171526910 rs12025905 G A 69.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.96;ClippingRankSum=-0;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=11.63;ReadPosRankSum=-0;SOR=0.693 GT:AD:DP:GQ:PL 0/1:3,3:6:98:98,0,117 1 171548617 rs3817772 G A 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=-1.087;SOR=0.929 GT:AD:DP:GQ:PL 0/1:29,37:66:99:966,0,758 1 171556165 rs235501 G C 1322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-2.031;SOR=0.91 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1351,0,1452 1 171679958 rs10913530 G A 2031.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2060,209,0 1 171751236 rs2294720 T C 3978.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=1.133 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4007,368,0 1 171753039 rs2232816 A G 7326.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7355,687,0 1 171755170 rs2232818 G A 6679.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6708,651,0 1 171763522 rs909958 C A 3602.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3631,369,0 1 171810960 rs12239702 A G 9653.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,302:302:99:9682,906,0 1 171956803 rs3736790 C T 4281.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.219 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4310,429,0 1 172277925 rs34870740 C T 919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.67;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.966;SOR=0.532 GT:AD:DP:GQ:PL 0/1:46,41:87:99:948,0,1052 1 172356437 rs6688654 A G 6206.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6235,650,0 1 172411496 rs2230471 A G 5903.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5932,563,0 1 172411768 rs13932 T C 2575.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=1.7 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2604,237,0 1 172422209 rs2285175 C T 5894.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5923,580,0 1 172437592 rs1129942 G A 3108.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.39 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3137,306,0 1 173457017 rs78495657 C T 2155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=4.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=-0.561;SOR=0.922 GT:AD:DP:GQ:PL 0/1:63,83:146:99:2184,0,1707 1 173474429 rs12026637 T C 1011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.193;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.8;ReadPosRankSum=0.416;SOR=0.789 GT:AD:DP:GQ:PL 0/1:71,44:115:99:1040,0,1668 1 173516871 rs16846206 G C 1120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=1.336;SOR=0.481 GT:AD:DP:GQ:PL 0/1:39,47:86:99:1149,0,985 1 173516903 rs10494490 A G 1063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.424;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.62;ReadPosRankSum=-1.765;SOR=0.306 GT:AD:DP:GQ:PL 0/1:24,40:64:99:1092,0,589 1 173606179 rs12065988 A T 629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.405;SOR=0.646 GT:AD:DP:GQ:PL 0/1:29,25:54:99:658,0,794 1 174417231 rs7516240 G A 2810.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.77;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2839,314,0 1 175046789 rs2072032 A G 1966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-1.882;SOR=0.664 GT:AD:DP:GQ:PL 0/1:109,89:198:99:1995,0,2760 1 175054548 rs1573758 C T 818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=1.663;SOR=0.749 GT:AD:DP:GQ:PL 0/1:47,40:87:99:847,0,1082 1 175087884 rs2269654 C T 7024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-1.416;QD=19.25;ReadPosRankSum=-0.998;SOR=0.662 GT:AD:DP:GQ:PGT:PID:PL 0/1:183,182:365:99:0|1:175087884_C_T:7053,0,9224 1 175087885 rs6694078 A G 7024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.048;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-1.416;QD=19.25;ReadPosRankSum=-1.075;SOR=0.662 GT:AD:DP:GQ:PGT:PID:PL 0/1:183,182:365:99:0|1:175087884_C_T:7053,0,9224 1 175092674 rs2285215 C T 10214.8 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,322:322:99:10243,966,0 1 175092707 rs10798333 C T 3944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=4.085;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=0.177;SOR=0.518 GT:AD:DP:GQ:PL 0/1:184,164:348:99:3973,0,4680 1 175105942 rs4650703 G A 3555.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3584,372,0 1 175113578 rs10912897 T C 4183.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4212,437,0 1 175129924 . C CCTT 5156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.008;ClippingRankSum=0;DP=167;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.513;QD=35.32;ReadPosRankSum=0.452;SOR=0.544 GT:AD:DP:GQ:PL 0/1:16,130:146:99:5185,0,272 1 175299301 rs2027867 T C 2652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.965;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.084;SOR=0.883 GT:AD:DP:GQ:PL 0/1:118,114:232:99:2681,0,2698 1 175324651 rs2228359 A G 2313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-1.815;SOR=0.669 GT:AD:DP:GQ:PL 0/1:98,103:201:99:2342,0,2145 1 175335234 rs1385541 C T 1997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.611;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.108;SOR=0.734 GT:AD:DP:GQ:PL 0/1:101,87:188:99:2026,0,2353 1 175348723 rs859427 C T 2116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.86;SOR=0.88 GT:AD:DP:GQ:PL 0/1:95,93:188:99:2145,0,2232 1 175355152 rs72723450 C T 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=4.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=-0.315;SOR=0.429 GT:AD:DP:GQ:PL 0/1:109,67:176:99:1416,0,2823 1 175355391 rs859437 A G 4994.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.158 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5023,491,0 1 175365732 rs138698493 G A 1951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.917;SOR=0.749 GT:AD:DP:GQ:PL 0/1:110,86:196:99:1980,0,2810 1 175375683 rs859399 T C 2658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=-0.137;SOR=0.736 GT:AD:DP:GQ:PL 0/1:98,113:211:99:2687,0,2263 1 175375802 rs859398 T C 1937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.07;SOR=0.652 GT:AD:DP:GQ:PL 0/1:90,86:176:99:1966,0,2128 1 176050430 rs56720201 GA G 242.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.5;MQRankSum=2.104;QD=4.95;ReadPosRankSum=1.246;SOR=0.584 GT:AD:DP:GQ:PL 0/1:32,17:55:99:280,0,621 1 176175764 rs151228500 G A 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.193;SOR=0.871 GT:AD:DP:GQ:PL 0/1:89,74:163:99:1791,0,2218 1 176659541 rs182831354 G A 2508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.198;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=-0.456;SOR=0.786 GT:AD:DP:GQ:PL 0/1:162,111:273:99:2537,0,4121 1 176857347 rs2072935 A G 2508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.84;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.858;SOR=0.958 GT:AD:DP:GQ:PL 0/1:104,98:202:99:2537,0,2366 1 176863836 rs2281180 G C 4803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.015;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=0.299;SOR=0.74 GT:AD:DP:GQ:PL 0/1:169,186:355:99:4832,0,4174 1 176863867 rs2228956 T C 4317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.759;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=0.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.352;SOR=0.738 GT:AD:DP:GQ:PL 0/1:157,176:333:99:4346,0,3654 1 176918504 rs2076073 A G 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.564;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=5.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.429;SOR=1.208 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1791,0,1861 1 176934389 rs12565733 T A 584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=-0.238;SOR=0.512 GT:AD:DP:GQ:PL 0/1:54,28:82:99:613,0,1446 1 176992553 rs172917 A G 3384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-1.124;SOR=0.66 GT:AD:DP:GQ:PL 0/1:143,147:290:99:3413,0,3370 1 177001896 rs2076069 C G 4143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DB;DP=375;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=0.518;SOR=0.713 GT:AD:DP:GQ:PL 0/1:186,188:374:99:4172,0,4284 1 177198998 rs3176441 T C 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.294;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-0.489;SOR=1.024 GT:AD:DP:GQ:PL 0/1:83,91:174:99:2369,0,1817 1 177247854 rs3176443 C G 2392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-1.248;SOR=0.674 GT:AD:DP:GQ:PL 0/1:103,100:203:99:2421,0,2573 1 177250670 rs1045736 G A 2455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.623;SOR=0.719 GT:AD:DP:GQ:PL 0/1:101,107:208:99:2484,0,2428 1 177908852 rs943762 C T 2534.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2563,257,0 1 177929554 rs10913472 C T 1377.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1406,141,0 1 177929987 rs12040910 T C 4822.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4851,489,0 1 177930096 rs867275 T C 3383.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=1.631 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3412,330,0 1 178483231 rs10913563 G A 3048.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3077,329,0 1 178489978 rs3813636 T G 5903.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5932,602,0 1 178858759 rs3753534 G A 345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.065;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.4;ReadPosRankSum=0.269;SOR=0.784 GT:AD:DP:GQ:PL 0/1:36,18:54:99:374,0,916 1 179051300 rs2296377 T C 8013.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8042,788,0 1 179084080 rs2274230 T G 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.773;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-2.335;SOR=0.693 GT:AD:DP:GQ:PL 0/1:85,64:149:99:1558,0,2031 1 179319580 rs3753527 T C 3017.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3046,299,0 1 179347832 rs10798674 T C 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.471;SOR=0.692 GT:AD:DP:GQ:PL 0/1:71,75:146:99:1771,0,1692 1 179504025 rs141228272 AAAG A 2493.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.363;QD=20.78;ReadPosRankSum=-0.067;SOR=0.684 GT:AD:DP:GQ:PL 0/1:57,63:120:99:2531,0,3059 1 179504043 rs6658180 C G 2596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.61;ReadPosRankSum=0.182;SOR=0.727 GT:AD:DP:GQ:PL 0/1:58,68:128:99:2625,0,3143 1 179520506 rs1410592 G A 2626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.128;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=3.281;SOR=0.484 GT:AD:DP:GQ:PL 0/1:110,113:223:99:2655,0,2576 1 179544898 rs1079292 T C 7975.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8004,818,0 1 179604864 rs4628468 C T 2392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.503;SOR=0.589 GT:AD:DP:GQ:PL 0/1:107,100:207:99:2421,0,2780 1 179609589 rs16854429 G T 797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.12;ReadPosRankSum=0.004;SOR=0.914 GT:AD:DP:GQ:PL 0/1:70,42:112:99:826,0,1696 1 179631242 rs35448215 G A 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.072;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-0.286;SOR=0.872 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1286,0,1979 1 179852074 rs1281378 T C 5710.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.173 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5739,570,0 1 179858444 rs2245425 G A 1835.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1864,188,0 1 179876988 rs609521 C G 1536.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=26.5;SOR=1.733 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1565,173,0 1 179887125 rs627897 G A 6250.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6279,600,0 1 179989584 rs6692219 G C 1564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.847;SOR=0.903 GT:AD:DP:GQ:PL 0/1:69,65:134:99:1593,0,1891 1 179989742 rs2477120 G C 2401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=0.067;SOR=0.674 GT:AD:DP:GQ:PL 0/1:98,93:191:99:2430,0,2679 1 180010911 rs16855164 A G 1523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.306;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=1.321;SOR=0.886 GT:AD:DP:GQ:PL 0/1:72,66:138:99:1552,0,1605 1 180080115 rs3767202 T G 874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.618;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.35;ReadPosRankSum=-0.961;SOR=0.908 GT:AD:DP:GQ:PL 0/1:28,29:57:99:903,0,651 1 180124288 rs77647137 G C 3372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=3.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.807;SOR=0.951 GT:AD:DP:GQ:PL 0/1:117,124:241:99:3401,0,3386 1 180145088 rs2298206 A G 3492.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=1.115 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3521,366,0 1 180241155 rs3806302 G T 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.581;SOR=0.512 GT:AD:DP:GQ:PL 0/1:76,79:155:99:1823,0,1890 1 180885430 rs10732273 T C 6178.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6207,623,0 1 180897569 rs3747958 C T 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.985;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=5.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=1.356;SOR=1.041 GT:AD:DP:GQ:PL 0/1:135,99:234:99:2513,0,3462 1 180905263 rs17302207 C T 2586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.328;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.375;SOR=0.693 GT:AD:DP:GQ:PL 0/1:100,100:200:99:2615,0,2419 1 180905694 rs3795503 C T 3305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.516;SOR=0.749 GT:AD:DP:GQ:PL 0/1:124,146:270:99:3334,0,2994 1 180913597 rs2331995 A G 5368.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5397,554,0 1 180953853 rs3747957 A G 1371.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1400,141,0 1 181018236 rs2236410 A G 7393.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.22;QD=29;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7422,765,0 1 181024404 rs3747956 G A 2997.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3026,321,0 1 181058643 rs1361365 A G 7915.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.85;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7944,724,0 1 181548341 rs17443123 A G 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.543;SOR=0.787 GT:AD:DP:GQ:PL 0/1:60,63:123:99:1449,0,1368 1 181686216 rs7540850 T C 1245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=1.039;SOR=0.677 GT:AD:DP:GQ:PL 0/1:34,54:88:99:1274,0,716 1 181752923 rs36163765 AAGCTT A 905.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=1.917;SOR=0.607 GT:AD:DP:GQ:PL 0/1:41,26:67:99:943,0,2147 1 182356399 rs1058111 A G 1993.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2022,195,0 1 182369078 rs6698722 G A 4796.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4825,453,0 1 182369233 rs6674281 A G 6646.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6675,605,0 1 182496829 rs7535533 A G 4422.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4451,461,0 1 182501933 rs266534 C A 3487.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3516,350,0 1 182551337 rs627928 A C 2136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=0.248;SOR=0.88 GT:AD:DP:GQ:PL 0/1:69,82:151:99:2165,0,1615 1 182554557 rs486907 C T 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=1.864;SOR=0.789 GT:AD:DP:GQ:PL 0/1:92,60:152:99:1383,0,2571 1 182569626 rs1144566 T C 4660.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.375 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4689,457,0 1 182571277 rs569790 C T 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.693;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=-0.573;SOR=0.651 GT:AD:DP:GQ:PL 0/1:86,56:142:99:1277,0,2178 1 182812410 rs376728056 CT C 268.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.768;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.58;ReadPosRankSum=0.747;SOR=0.836 GT:AD:DP:GQ:PL 0/1:53,22:84:99:306,0,1237 1 182850727 rs6677840 T C 3411.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3440,342,0 1 182993025 rs10911194 C T 6020.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6049,593,0 1 183072590 rs2296288 T C 6299.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6328,630,0 1 183085696 rs6424888 A G 1206.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1235,123,0 1 183085755 rs20563 A G 2719.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2748,255,0 1 183086757 rs2296292 A C 3340.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3369,327,0 1 183093875 rs20557 T C 6140.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6169,620,0 1 183094547 rs20558 T C 3411.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=28.91;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3440,354,0 1 183099701 rs2296300 G A 3098.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3127,323,0 1 183101686 rs12095664 G A 2235.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2264,222,0 1 183105534 rs20560 T C 3453.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=1.841 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3482,321,0 1 183105705 rs20561 G A 4564.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4593,481,0 1 183155482 rs684527 C A 5590.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5619,581,0 1 183177218 rs647347 A G 3168.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3197,311,0 1 183192386 rs144572936 C T 1096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.821;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=1.747;SOR=0.895 GT:AD:DP:GQ:PL 0/1:62,50:112:99:1125,0,1755 1 183206648 rs113467864 T C 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.242;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=0.347;SOR=0.479 GT:AD:DP:GQ:PL 0/1:52,40:92:99:1065,0,1293 1 183486859 rs789169 G A 1593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.626;SOR=1.085 GT:AD:DP:GQ:PL 0/1:57,69:126:99:1622,0,1318 1 183542387 rs2274064 T C 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.622;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=0.632;SOR=0.709 GT:AD:DP:GQ:PL 0/1:74,84:158:99:1996,0,1678 1 183616926 rs1174657 T C 6599.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6628,654,0 1 183617105 rs1174658 A G 6205.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6234,576,0 1 183775638 rs11579867 A T 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-1.133;SOR=0.65 GT:AD:DP:GQ:PL 0/1:37,45:82:99:1000,0,740 1 183849739 rs41263652 G C 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.942;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-1.131;SOR=1.044 GT:AD:DP:GQ:PL 0/1:45,43:88:99:1181,0,1174 1 183852914 rs10797919 G C 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-0.207;SOR=0.685 GT:AD:DP:GQ:PL 0/1:71,79:150:99:1839,0,1755 1 183876182 rs11591089 C T 767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.474;SOR=0.914 GT:AD:DP:GQ:PL 0/1:38,38:76:99:796,0,870 1 184020945 rs2274432 G A 3266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.09;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-0.558;SOR=0.722 GT:AD:DP:GQ:PL 0/1:154,152:306:99:3295,0,3556 1 184023529 rs1046934 A C 883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.647;SOR=0.696 GT:AD:DP:GQ:PL 0/1:37,39:76:99:912,0,926 1 184663537 rs9425343 A C 1032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.407;QD=7.17;ReadPosRankSum=0.956;SOR=0.833 GT:AD:DP:GQ:PL 0/1:95,49:144:99:1061,0,2445 1 184663581 rs9425634 T C 863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.475;QD=6.91;ReadPosRankSum=-1.605;SOR=0.731 GT:AD:DP:GQ:PL 0/1:85,40:125:99:892,0,2266 1 184675814 rs1062994 G A 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.098;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.366;SOR=0.765 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2058,0,2188 1 184677464 rs3736757 G A 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.637;SOR=0.772 GT:AD:DP:GQ:PL 0/1:87,86:173:99:1973,0,2091 1 184692999 rs71101940 T TA 199.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.324;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.24;ReadPosRankSum=0.212;SOR=0.941 GT:AD:DP:GQ:PL 0/1:15,17:52:99:212,0,349 1 184706212 rs10711907 GT G 547.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=1.252;SOR=0.582 GT:AD:DP:GQ:PL 0/1:23,19:42:99:585,0,720 1 185116333 . G C 324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.41;ReadPosRankSum=1.256;SOR=0.712 GT:AD:DP:GQ:PL 0/1:42,18:60:99:353,0,1121 1 185135745 rs950327 A G 540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.131;SOR=0.941 GT:AD:DP:GQ:PL 0/1:30,25:55:99:569,0,741 1 185137454 rs58809696 T TAAATGATAGAC 148.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.4;ClippingRankSum=-0;DB;DP=12;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=12.39;ReadPosRankSum=0.493;SOR=2.494 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,4:12:99:0|1:185137454_T_TAAATGATAGAC:186,0,1287 1 185137461 rs56166198 A T 157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.186;ClippingRankSum=-0;DB;DP=13;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=12.14;ReadPosRankSum=0.426;SOR=2.833 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,5:13:99:0|1:185137454_T_TAAATGATAGAC:186,0,1287 1 185137464 . T TAA 190.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=-0;DP=13;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=14.67;ReadPosRankSum=0.079;SOR=2.833 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,5:13:99:0|1:185137454_T_TAAATGATAGAC:228,0,1284 1 185143721 rs10489579 A G 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.345;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=0.581;SOR=0.532 GT:AD:DP:GQ:PL 0/1:63,75:138:99:2158,0,1462 1 185171869 rs6698109 A G 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=1.046;SOR=0.475 GT:AD:DP:GQ:PL 0/1:31,42:73:99:1024,0,651 1 185240474 rs12041704 A G 197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=-0.843;SOR=0.412 GT:AD:DP:GQ:PL 0/1:10,10:20:99:226,0,241 1 185958737 rs7539719 A G 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=6.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=1.662;SOR=0.373 GT:AD:DP:GQ:PL 0/1:81,85:166:99:2000,0,1892 1 185976244 rs1884662 G A 609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.009;SOR=0.444 GT:AD:DP:GQ:PL 0/1:31,28:59:99:638,0,866 1 186024643 rs12067376 G A 1357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=0.658;SOR=0.482 GT:AD:DP:GQ:PL 0/1:82,60:142:99:1386,0,2219 1 186026474 rs12129650 T C 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.853;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.154;SOR=0.836 GT:AD:DP:GQ:PL 0/1:38,41:79:99:1058,0,931 1 186031041 rs7522627 C T 2320.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.63;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2349,250,0 1 186055371 rs6425017 A G 618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.373;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.224;SOR=0.756 GT:AD:DP:GQ:PL 0/1:37,25:62:99:647,0,981 1 186064616 rs72720910 T C 1465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.319;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=-1.468;SOR=0.411 GT:AD:DP:GQ:PL 0/1:45,61:106:99:1494,0,1172 1 186086578 rs10157742 G A 865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.441;SOR=1.022 GT:AD:DP:GQ:PL 0/1:46,41:87:99:894,0,1206 1 186092076 rs2057388 A C 1128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.018;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.604;SOR=1.151 GT:AD:DP:GQ:PL 0/1:51,41:92:99:1157,0,1101 1 186092103 rs41317489 C T 1560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.509;SOR=0.759 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1589,0,1735 1 186099180 rs41317491 C T 1701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.16;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.618;SOR=0.665 GT:AD:DP:GQ:PL 0/1:79,77:156:99:1730,0,1810 1 186101539 rs10911825 A G 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.693;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.424;QD=11.78;ReadPosRankSum=-0.182;SOR=0.634 GT:AD:DP:GQ:PL 0/1:36,37:73:99:888,0,851 1 186113727 rs6693069 G A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.073;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.135;SOR=0.768 GT:AD:DP:GQ:PL 0/1:104,89:193:99:2038,0,2487 1 186134246 rs41317507 A T 685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-1.032;SOR=0.688 GT:AD:DP:GQ:PL 0/1:47,34:81:99:714,0,1192 1 186273994 rs2273779 C T 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.591;SOR=0.734 GT:AD:DP:GQ:PL 0/1:75,89:164:99:1977,0,1615 1 186276653 rs150580694 C T 4523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.618;ClippingRankSum=0;DB;DP=523;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.5;MQ=59.67;MQRankSum=0.871;QD=8.73;ReadPosRankSum=1.316;SOR=0.934 GT:AD:DP:GQ:PL 0/1:282,236:518:99:4552,0,10481 1 186276661 rs61831150 A G 5821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0;DB;DP=513;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=-0.501;QD=11.42;ReadPosRankSum=-0.166;SOR=0.542 GT:AD:DP:GQ:PL 0/1:236,274:510:99:5850,0,8373 1 186277088 rs68069719 G C 17276.8 PASS AC=2;AF=1;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.55;QD=32.85;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,526:526:99:17305,1577,0 1 186277989 rs3737940 A G 2501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.771;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-1.682;SOR=0.737 GT:AD:DP:GQ:PL 0/1:105,102:207:99:2530,0,2544 1 186326757 rs3841803 TA T 699.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.058;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.43;ReadPosRankSum=1.708;SOR=0.839 GT:AD:DP:GQ:PL 0/1:50,33:83:99:737,0,1328 1 186360814 rs77026585 G A 554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.462;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=9.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=0.926;SOR=0.174 GT:AD:DP:GQ:PL 0/1:36,27:63:99:583,0,1111 1 186363119 rs12084264 C G 623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.783;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=1.698;SOR=0.781 GT:AD:DP:GQ:PL 0/1:33,29:62:99:652,0,717 1 186418600 rs12407957 C T 569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.942;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=0.787;SOR=0.407 GT:AD:DP:GQ:PL 0/1:39,32:71:99:598,0,1042 1 186648197 rs5277 C G 1460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.911;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.156;SOR=0.809 GT:AD:DP:GQ:PL 0/1:79,54:133:99:1489,0,2238 1 186946912 rs2307198 G A 1713.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1742,168,0 1 192335271 rs59139714 C CTAAT 328.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.948;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=7.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-1.009;SOR=2.494 GT:AD:DP:GQ:PL 0/1:18,10:28:99:366,0,1016 1 193051685 rs2275444 G A 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=-0.25;SOR=1.025 GT:AD:DP:GQ:PL 0/1:79,62:141:99:1301,0,1815 1 193074651 rs10921310 T A 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.263;SOR=0.552 GT:AD:DP:GQ:PL 0/1:37,36:73:99:964,0,925 1 196227526 rs977157 A G 6304.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6333,603,0 1 196642233 rs800292 G A 1326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.582;SOR=0.597 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1355,0,1364 1 196642969 rs35507625 C CTT 777.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=2.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=-1.932;SOR=1.23 GT:AD:DP:GQ:PL 0/1:26,26:54:99:815,0,755 1 196642980 rs35814900 G A 807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.027;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-1.388;SOR=0.996 GT:AD:DP:GQ:PL 0/1:30,29:59:99:836,0,729 1 196654324 rs1061147 A C 3587.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3616,368,0 1 196659237 rs1061170 C T 1917.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=1.392 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1946,183,0 1 196682947 rs2274700 G A 2012.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2041,216,0 1 196712577 rs513699 T C 895.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.439;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.5;MQ=57.45;MQRankSum=-13.097;QD=5;ReadPosRankSum=-1.602;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 0/1:146,33:179:99:0|1:196712577_T_C:924,0,6432 1 196712586 rs61822181 C T 973.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=2.51;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=-13.023;QD=4.97;ReadPosRankSum=-1.186;SOR=0.94 GT:AD:DP:GQ:PGT:PID:PL 0/1:159,37:196:99:0|1:196712577_T_C:1002,0,6757 1 196757392 rs400344 C T 1249.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.21;QD=30.48;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1278,123,0 1 196797238 rs425757 C T 446.77 PASS AC=2;AF=1;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.35;QD=40.62;SOR=1.27 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,11:11:33:1|1:196797238_C_T:475,33,0 1 196797244 rs113811987 C G 446.77 PASS AC=2;AF=1;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.76;QD=44.68;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,10:10:33:1|1:196797238_C_T:475,33,0 1 196797292 rs388862 G C 125.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.88;QD=31.26;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,4:4:12:153,12,0 1 196797357 rs3201739 A G 190.84 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.63;QD=31.81;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,6:6:18:219,18,0 1 196801042 rs4230 G T 2370.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.48;QD=29.27;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2399,243,0 1 196801078 rs414628 A T 2573.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.97;QD=27.98;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2602,276,0 1 196874356 rs10801578 G T 4867.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=31;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4896,471,0 1 196876458 rs7417769 A G 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.22;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=0.947;SOR=0.597 GT:AD:DP:GQ:PL 0/1:86,55:141:99:1153,0,2000 1 196920148 rs4085749 C T 1936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.119;SOR=0.703 GT:AD:DP:GQ:PL 0/1:99,88:187:99:1965,0,2472 1 196920178 rs3828032 C T 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-1.617;SOR=0.446 GT:AD:DP:GQ:PL 0/1:70,74:144:99:1687,0,1692 1 196928188 rs41310132 A G 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=1.239;SOR=0.598 GT:AD:DP:GQ:PL 0/1:45,40:85:99:1021,0,1154 1 197009798 rs5998 A G 2898.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2927,301,0 1 197030201 rs5997 T C 1553.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=34.53;SOR=2.252 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1582,135,0 1 197031021 rs6003 C T 3185.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.7;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3214,344,0 1 197053561 rs369160994 TA T 99.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.117;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.43;ReadPosRankSum=-0.906;SOR=0.765 GT:AD:DP:GQ:PL 0/1:31,10:52:99:137,0,683 1 197055925 rs10754213 T C 1843.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1872,174,0 1 197070521 rs12138336 C G 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.25;ReadPosRankSum=-0.751;SOR=0.639 GT:AD:DP:GQ:PL 0/1:70,71:141:99:2038,0,2016 1 197070776 rs10922162 C T 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=2.326;SOR=0.59 GT:AD:DP:GQ:PL 0/1:94,78:172:99:1909,0,2374 1 197070815 rs1412640 T C 5743.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5772,548,0 1 197070901 rs964201 A G 5294.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.51;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5323,473,0 1 197091537 rs4915337 A T 4394.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4423,408,0 1 197094030 rs6676084 C T 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.738;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=-0.826;SOR=0.667 GT:AD:DP:GQ:PL 0/1:50,37:87:99:805,0,1400 1 197102745 rs4915344 A G 720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.14;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=0.295;SOR=0.399 GT:AD:DP:GQ:PL 0/1:46,34:80:99:749,0,1199 1 197112533 rs6677082 G A 4157.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4186,393,0 1 197113073 rs1571964 G A 2235.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2264,204,0 1 197128726 rs12128631 G A 2432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.24;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.432;SOR=0.689 GT:AD:DP:GQ:PL 0/1:128,103:231:99:2461,0,3147 1 197297540 rs12042179 A T 941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.406;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.294;SOR=0.612 GT:AD:DP:GQ:PL 0/1:34,40:74:99:970,0,759 1 197390368 rs3902057 A G 5978.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6007,552,0 1 197576307 rs11411505 A AT 2259.73 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=35.87;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2297,189,0 1 197890422 rs12122995 C G 3718.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.91;SOR=1.761 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3747,339,0 1 197896728 rs12046958 T C 1182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.05;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=1.271;SOR=0.474 GT:AD:DP:GQ:PL 0/1:68,52:120:99:1211,0,1737 1 198711170 . C CA 64.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=3.252;QD=0.51;ReadPosRankSum=0.602;SOR=0.603 GT:AD:DP:GQ:PL 0/1:107,19:138:93:93,0,2259 1 198717218 rs71286550 G GT 233.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.41;ReadPosRankSum=0.24;SOR=0.609 GT:AD:DP:GQ:PL 0/1:35,18:60:99:271,0,672 1 200017586 rs2821368 C G 2834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.248;SOR=0.569 GT:AD:DP:GQ:PL 0/1:127,118:245:99:2863,0,3312 1 200080462 rs111949351 A AT 130.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.413;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.6;MLEAC=1;MLEAF=0.5;MQ=62.2;MQRankSum=9.976;QD=1.23;ReadPosRankSum=0.763;SOR=0.321 GT:AD:DP:GQ:PL 0/1:82,24:106:99:168,0,2938 1 200080463 rs3828110 C T 275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=5.824;MLEAC=1;MLEAF=0.5;MQ=62.2;MQRankSum=-3.07;QD=2.6;ReadPosRankSum=1.609;SOR=1.316 GT:AD:DP:GQ:PL 0/1:80,26:106:99:304,0,1834 1 200080464 rs202167972 C A 314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.818;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=6.785;MLEAC=1;MLEAF=0.5;MQ=62.18;MQRankSum=4.876;QD=4.63;ReadPosRankSum=-0.704;SOR=0.273 GT:AD:DP:GQ:PL 0/1:44,24:99:99:343,0,2146 1 200522566 rs12120084 G C 2012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=0.674;SOR=0.769 GT:AD:DP:GQ:PL 0/1:69,86:155:99:2041,0,1559 1 200534248 rs7543730 C T 1236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.242;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.642;SOR=0.705 GT:AD:DP:GQ:PL 0/1:56,54:110:99:1265,0,1305 1 200558363 rs6665951 T C 2760.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2789,268,0 1 200618238 rs6665604 T C 4303.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4332,460,0 1 200776641 rs7552353 C T 799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=-0.043;SOR=0.659 GT:AD:DP:GQ:PL 0/1:46,39:85:99:828,0,1100 1 200867492 rs2271018 C G 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=-0.143;SOR=0.755 GT:AD:DP:GQ:PL 0/1:87,71:158:99:1606,0,2173 1 200880978 rs296520 C T 7774.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.36;QD=32.39;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7803,723,0 1 200881172 rs296521 C A 7981.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.29;QD=30.12;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8010,795,0 1 200944057 rs296565 G A 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.169;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.345;SOR=0.442 GT:AD:DP:GQ:PL 0/1:59,73:132:99:1671,0,1525 1 201016296 rs3850625 G A 2013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.704;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=-0.613;SOR=0.776 GT:AD:DP:GQ:PL 0/1:110,91:201:99:2042,0,2432 1 201020105 rs6702590 A G 2791.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2820,273,0 1 201028299 rs56021911 G A 501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.412;SOR=0.99 GT:AD:DP:GQ:PL 0/1:27,24:51:99:530,0,645 1 201044748 rs1998721 A G 1883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.385;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-0.235;SOR=0.954 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1912,0,1824 1 201060865 rs2296383 G A 1500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.192;SOR=0.593 GT:AD:DP:GQ:PL 0/1:75,69:144:99:1529,0,1720 1 201112981 rs8158 A G 5628.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5657,545,0 1 201162411 rs12089471 G A 817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=0.143;SOR=1.011 GT:AD:DP:GQ:PL 0/1:45,38:83:99:846,0,1025 1 201166383 rs4915221 G A 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.056;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.804;SOR=0.852 GT:AD:DP:GQ:PL 0/1:69,55:124:99:1196,0,1511 1 201166435 rs11589317 T C 2913.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2942,305,0 1 201174204 rs12725611 C T 1560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.078;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=3.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.65;SOR=1.035 GT:AD:DP:GQ:PL 0/1:71,66:139:99:1589,0,1735 1 201175227 rs832156 C A 880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.444;SOR=0.631 GT:AD:DP:GQ:PL 0/1:44,37:81:99:909,0,1087 1 201175274 rs9651057 A G 3690.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3719,375,0 1 201175715 rs1341631 G T 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.834;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.77;ReadPosRankSum=0.069;SOR=0.615 GT:AD:DP:GQ:PL 0/1:165,78:243:99:1674,0,4297 1 201176018 rs10753895 A G 1714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.319;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-2.263;SOR=0.76 GT:AD:DP:GQ:PL 0/1:85,69:154:99:1743,0,2151 1 201178926 . G GGCAGGTTATAGGAAGGATTTGGGGGCTCCTAAGGGAATGGGTTCAGGGAGTAAGGCAAGTTTTAGGGATGGTTTAGGGGGTTCTGGAGAAATGGGGTCAGTGAATGAA 13953.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.629;ClippingRankSum=0;DP=250;ExcessHet=3.0103;FS=3.777;MLEAC=2;MLEAF=1;MQ=55.68;MQRankSum=0.357;QD=102.6;ReadPosRankSum=-1.15;SOR=0.797 GT:AD:DP:GQ:PL 1/1:1,135:136:99:13991,954,0 1 201179128 rs71635535 G A 3861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=0.82;MLEAC=1;MLEAF=0.5;MQ=52.44;MQRankSum=-0.921;QD=11.32;ReadPosRankSum=0.286;SOR=0.752 GT:AD:DP:GQ:PL 0/1:170,171:341:99:3890,0,3915 1 201179599 rs12021954 G C 1032.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.482;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.235;MLEAC=1;MLEAF=0.5;MQ=35.44;MQRankSum=1.323;QD=14.15;ReadPosRankSum=-0.789;SOR=1.204 GT:AD:DP:GQ:PL 0/1:39,34:73:99:1061,0,1238 1 201181223 rs12070919 A G 7008.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.22;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,211:211:99:7037,632,0 1 201187764 rs10920144 T C 4875.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4904,509,0 1 201190732 rs3738269 G A 2194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.98;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.406;SOR=0.804 GT:AD:DP:GQ:PL 0/1:101,94:195:99:2223,0,2632 1 201195119 rs3738270 C T 3278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.385;SOR=0.59 GT:AD:DP:GQ:PL 0/1:147,134:281:99:3307,0,3690 1 201285759 rs1779297 A G 4844.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4873,487,0 1 201351421 rs2275866 T A 3366.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3395,345,0 1 201355522 rs4128458 T C 5723.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.34;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5752,531,0 1 201355943 rs2799677 C T 6193.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6222,615,0 1 201356001 rs78190062 CCCA C 9850.73 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=44.78;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,220:220:99:9888,663,0 1 201358304 rs3738281 C A 6211.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6240,615,0 1 201383643 rs2026594 A C 6210.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6239,622,0 1 201618264 rs1267119 C T 2969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.111;SOR=0.791 GT:AD:DP:GQ:PL 0/1:138,126:264:99:2998,0,3499 1 201754444 rs16849342 G C 1275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.883;SOR=1.104 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1304,0,1134 1 201826340 rs2172935 C T 804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.37;ReadPosRankSum=-0.043;SOR=0.772 GT:AD:DP:GQ:PGT:PID:PL 0/1:21,35:56:99:0|1:201826340_C_T:833,0,450 1 201837934 rs34353605 CGT C 4628.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.628;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=0;QD=22.91;ReadPosRankSum=-0.098;SOR=0.846 GT:AD:DP:GQ:PL 1/1:11,191:224:99:4635,129,0 1 201840464 rs2644124 T C 1241.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.56;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1270,111,0 1 201860626 rs2250377 A G 2572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.954;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.105;SOR=0.797 GT:AD:DP:GQ:PL 0/1:132,107:239:99:2601,0,3079 1 201869257 rs2820312 G A 2434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.789;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.382;SOR=0.941 GT:AD:DP:GQ:PL 0/1:110,103:213:99:2463,0,2595 1 201969082 rs1130790 G A 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.587;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=1.369;SOR=0.534 GT:AD:DP:GQ:PL 0/1:66,64:130:99:1339,0,1641 1 201970562 rs4332408 T C 3851.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3880,396,0 1 201974712 rs12712 G C 2636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.393;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=0.29;SOR=0.527 GT:AD:DP:GQ:PL 0/1:93,99:192:99:2665,0,2432 1 201981218 rs11543979 C G 3059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-3.015;SOR=0.601 GT:AD:DP:GQ:PL 0/1:134,123:257:99:3088,0,3411 1 201981862 rs2819362 T C 5063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.529;ClippingRankSum=0;DB;DP=440;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-2.803;SOR=0.778 GT:AD:DP:GQ:PL 0/1:216,219:435:99:5092,0,4885 1 202092360 rs3795595 G A 6626.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6655,659,0 1 202092415 rs3795596 A G 6349.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6378,611,0 1 202092580 rs7516762 T C 5822.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5851,571,0 1 202129826 rs4309039 T C 3657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.388;SOR=0.671 GT:AD:DP:GQ:PL 0/1:174,154:328:99:3686,0,4140 1 202172943 rs72746693 A G 1070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-1.085;SOR=0.773 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1099,0,1108 1 202183308 rs10920362 C T 6061.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=28.73;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6090,632,0 1 202183357 rs74355478 TG T 2806.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=4.526;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=2;QD=16.91;ReadPosRankSum=0.09;SOR=0.443 GT:AD:DP:GQ:PL 0/1:82,84:166:99:2844,0,2802 1 202276494 rs896551 C T 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=-0.184;SOR=0.814 GT:AD:DP:GQ:PL 0/1:70,57:127:99:1190,0,1608 1 202287206 rs788795 T C 3543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.296;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.733;SOR=0.786 GT:AD:DP:GQ:PL 0/1:133,144:277:99:3572,0,2937 1 202287537 rs788794 G A 3239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.836;SOR=0.595 GT:AD:DP:GQ:PL 0/1:147,139:286:99:3268,0,3754 1 202287813 rs788793 T C 2614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.465;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-1.958;SOR=0.799 GT:AD:DP:GQ:PL 0/1:133,102:235:99:2643,0,3288 1 202302232 rs17490864 A G 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.312;SOR=0.823 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1193,0,1298 1 202304868 rs14451 T C 1032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.71;ReadPosRankSum=-0.621;SOR=0.525 GT:AD:DP:GQ:PL 0/1:83,51:134:99:1061,0,2101 1 202565948 rs504261 G A 6779.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6808,719,0 1 202705455 rs1141109 G C 4456.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4485,468,0 1 202715284 rs1141108 G A 2556.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=30.8;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2585,247,0 1 202718202 rs1892164 G A 4133.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4162,422,0 1 202733238 rs3196669 C T 2054.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2083,222,0 1 202887295 rs2275734 G A 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.03;ReadPosRankSum=-0.997;SOR=0.785 GT:AD:DP:GQ:PL 0/1:59,40:99:99:823,0,1444 1 202888947 rs3182429 T C 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=-1.402;SOR=0.809 GT:AD:DP:GQ:PL 0/1:52,37:89:99:803,0,1329 1 203008174 rs61821060 G C 4037.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=1.485 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4066,387,0 1 203008286 rs10920553 C G 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.997;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-1.661;SOR=0.733 GT:AD:DP:GQ:PL 0/1:122,110:232:99:2636,0,2872 1 203018043 rs61756414 C G 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-1.694;SOR=0.82 GT:AD:DP:GQ:PL 0/1:68,46:116:99:1153,0,1821 1 203028371 rs61732315 G T 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.161;SOR=0.915 GT:AD:DP:GQ:PL 0/1:74,82:159:99:1859,0,1687 1 203040816 rs2270540 G C 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.452;SOR=0.683 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1301,0,1337 1 203053768 rs903356 T C 4086.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4115,423,0 1 203055101 rs4950877 A G 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=3.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=1.691;SOR=0.387 GT:AD:DP:GQ:PL 0/1:44,34:78:99:819,0,1115 1 203098275 rs2228079 T G 9172.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,312:312:99:9201,935,0 1 203137784 rs35823777 A ACT 6119.73 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.67;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,137:137:99:6157,412,0 1 203143725 rs2642531 G C 2295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.181;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=7.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.464;SOR=1.161 GT:AD:DP:GQ:PL 0/1:109,90:199:99:2324,0,2708 1 203148633 rs4950927 A G 4357.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4386,426,0 1 203152801 rs880633 T C 2159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.938;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=0.27;SOR=0.871 GT:AD:DP:GQ:PL 0/1:58,85:143:99:2188,0,1308 1 203154532 rs1538372 A G 3368.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3397,324,0 1 203317162 rs7543148 C T 2796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.066;SOR=0.74 GT:AD:DP:GQ:PL 0/1:99,124:223:99:2825,0,2311 1 203652444 rs1419114 A G 7148.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7177,723,0 1 203667409 rs2228445 T C 6054.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6083,618,0 1 203677250 rs3753036 G A 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=2.571;SOR=0.763 GT:AD:DP:GQ:PL 0/1:83,77:160:99:1941,0,2179 1 203740615 rs3737976 T C 555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.394;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.82;ReadPosRankSum=1.015;SOR=0.836 GT:AD:DP:GQ:PL 0/1:35,28:63:99:584,0,758 1 203743122 rs3820194 G A 2056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.692;SOR=0.696 GT:AD:DP:GQ:PL 0/1:91,89:180:99:2085,0,2113 1 203743653 rs3766748 C T 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=1.001;SOR=0.771 GT:AD:DP:GQ:PL 0/1:95,63:158:99:1444,0,2402 1 203743798 rs41264261 C T 1549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=1.474;SOR=0.436 GT:AD:DP:GQ:PL 0/1:54,66:120:99:1578,0,1389 1 203766827 rs872032 T C 1913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=4.364;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-2.696;SOR=0.547 GT:AD:DP:GQ:PL 0/1:100,78:178:99:1942,0,2642 1 203767822 rs6697388 T G 2488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.783;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-0.079;SOR=0.736 GT:AD:DP:GQ:PL 0/1:96,94:190:99:2517,0,2457 1 203787700 rs4951260 T C 6053.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6082,620,0 1 203799343 rs12239438 C T 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.005;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=1.136;SOR=0.525 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,28:64:99:0|1:203799343_C_T:692,0,780 1 203817549 rs12086293 T C 609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=5.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.256;SOR=0.638 GT:AD:DP:GQ:PL 0/1:26,29:55:99:638,0,647 1 204129671 rs5707 A C 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=4.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=-1.201;SOR=0.328 GT:AD:DP:GQ:PL 0/1:30,51:81:99:1155,0,685 1 204159611 rs71745629 CT C 1231.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.5;MQ=60.96;MQRankSum=2.48;QD=17.6;ReadPosRankSum=0.16;SOR=0.944 GT:AD:DP:GQ:PL 0/1:31,39:70:99:1269,0,1039 1 204159787 rs4889 G C 3636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.36;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.313;SOR=0.651 GT:AD:DP:GQ:PL 0/1:124,152:276:99:3665,0,2824 1 204198209 rs3795571 A G 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.478;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=3.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.277;SOR=0.987 GT:AD:DP:GQ:PL 0/1:101,74:175:99:1762,0,2430 1 204199614 rs10900562 C T 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.356;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=6.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=0.302;SOR=0.888 GT:AD:DP:GQ:PL 0/1:103,69:172:99:1539,0,2483 1 204216601 rs4288652 G A 789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=-1.657;SOR=0.371 GT:AD:DP:GQ:PL 0/1:24,32:56:99:818,0,590 1 204230581 rs3795569 G A 1561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-1.233;SOR=0.527 GT:AD:DP:GQ:PL 0/1:88,70:158:99:1590,0,2237 1 204237416 rs10900571 C T 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.816;SOR=1.044 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1260,0,1209 1 204379617 rs3014626 T C 6447.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.101;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.24;ReadPosRankSum=1.002;SOR=0.776 GT:AD:DP:GQ:PL 1/1:2,198:200:99:6476,548,0 1 204413297 rs2292459 C T 3754.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.17;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,85:85:99:1|1:204413297_C_T:3783,256,0 1 204413299 rs2292460 G A 3754.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.7;SOR=0.741 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,84:84:99:1|1:204413297_C_T:3783,256,0 1 204434438 rs45492196 G A 631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.821;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=1.278;SOR=0.575 GT:AD:DP:GQ:PL 0/1:40,29:69:99:660,0,840 1 204438334 rs1124777 C T 4409.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4438,432,0 1 204438643 rs1553921 G T 4437.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4466,453,0 1 204516025 rs2290854 A G 1615.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1644,158,0 1 204587240 rs3747632 G A 6602.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6631,642,0 1 204921258 rs12141283 A G 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.361;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.08;ReadPosRankSum=0.231;SOR=0.62 GT:AD:DP:GQ:PL 0/1:32,52:84:99:1463,0,675 1 204943947 rs2246662 C A 1325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.51;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.405;SOR=0.577 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1354,0,1725 1 204945934 rs6657372 A G 2550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.108;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=3.199;SOR=0.865 GT:AD:DP:GQ:PL 0/1:110,111:221:99:2579,0,2422 1 204948659 rs6667532 A G 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.563;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=1.029;SOR=0.902 GT:AD:DP:GQ:PL 0/1:87,76:163:99:1825,0,2137 1 204978704 rs55678495 G A 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.482;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=-1.241;SOR=0.628 GT:AD:DP:GQ:PL 0/1:79,53:132:99:1148,0,1856 1 205031116 rs2229866 C T 3008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.391;SOR=0.684 GT:AD:DP:GQ:PL 0/1:114,118:232:99:3037,0,3018 1 205041158 rs2229868 C T 2567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.281;SOR=0.67 GT:AD:DP:GQ:PL 0/1:96,113:209:99:2596,0,2185 1 205052939 rs4950979 G A 5410.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5439,534,0 1 205053219 rs4951168 C T 5078.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5107,482,0 1 205069404 rs11240356 G A 1410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.069;SOR=0.711 GT:AD:DP:GQ:PL 0/1:63,61:124:99:1439,0,1547 1 205129319 rs1062715 G A 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-1.953;SOR=0.596 GT:AD:DP:GQ:PL 0/1:91,80:171:99:1738,0,2229 1 205130413 rs3851294 A G 4791.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4820,485,0 1 205138321 rs35845538 G C 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.208;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=1.225;SOR=0.792 GT:AD:DP:GQ:PL 0/1:55,40:95:99:1144,0,1604 1 205272926 rs1106201 C T 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=5.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.515;SOR=0.443 GT:AD:DP:GQ:PL 0/1:136,126:262:99:3034,0,3405 1 205272983 rs1106202 C G 3100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.1;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=8.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=0.025;SOR=0.354 GT:AD:DP:GQ:PL 0/1:112,108:220:99:3129,0,3197 1 205275421 rs4951197 A G 4836.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4865,452,0 1 205308335 rs1105385 G A 804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.52;ReadPosRankSum=-2.71;SOR=0.617 GT:AD:DP:GQ:PL 0/1:68,39:107:99:833,0,1733 1 205308368 rs1105387 C T 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=3.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=-0.341;SOR=1.037 GT:AD:DP:GQ:PL 0/1:92,63:155:99:1463,0,2427 1 205353492 rs2274702 A C 523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.98;ReadPosRankSum=-0.636;SOR=0.515 GT:AD:DP:GQ:PL 0/1:48,27:75:99:552,0,1177 1 205492756 rs7529442 A G 2579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.293;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=-1.731;SOR=0.643 GT:AD:DP:GQ:PL 0/1:82,100:182:99:2608,0,1894 1 205495976 rs1544154 A G 2649.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2678,261,0 1 205554085 rs7526132 G C 2326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.94;ReadPosRankSum=-0.561;SOR=0.981 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,63:146:99:0|1:205554085_G_C:2355,0,3895 1 205554095 rs7515820 A C 2326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.324;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.16;ReadPosRankSum=-0.921;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,62:144:99:0|1:205554085_G_C:2355,0,3895 1 205555145 rs7531623 G A 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-0.603;SOR=0.729 GT:AD:DP:GQ:PL 0/1:67,46:113:99:1059,0,1807 1 205568390 rs2282450 T A 2150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.714;SOR=0.643 GT:AD:DP:GQ:PL 0/1:57,91:148:99:2179,0,1299 1 205739993 rs11423873 G GA 1095.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=1.358;SOR=0.647 GT:AD:DP:GQ:PL 0/1:70,50:120:99:1133,0,1565 1 205801872 rs1361754 A G 2261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.456;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.998;SOR=0.943 GT:AD:DP:GQ:PL 0/1:139,99:238:99:2290,0,3172 1 205810947 rs11240573 C T 1377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.185;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=0.678;SOR=0.72 GT:AD:DP:GQ:PL 0/1:122,70:192:99:1406,0,2769 1 205812912 rs7518979 A G 1723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.297;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.048;SOR=0.679 GT:AD:DP:GQ:PL 0/1:90,73:163:99:1752,0,2070 1 205814497 rs1891460 T C 6069.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6098,618,0 1 205884062 rs9438438 T C 3287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.15;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.349;SOR=0.768 GT:AD:DP:GQ:PL 0/1:150,140:290:99:3316,0,3637 1 205884274 rs6669481 T C 3798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=5.772;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.196;QD=9.52;ReadPosRankSum=-0.545;SOR=0.948 GT:AD:DP:GQ:PL 0/1:234,165:399:99:3827,0,5796 1 205887981 rs16856462 T C 2259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.8;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.165;SOR=0.673 GT:AD:DP:GQ:PL 0/1:133,94:227:99:2288,0,3307 1 205889329 rs16856470 C T 1067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.621;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-0.999;SOR=0.865 GT:AD:DP:GQ:PL 0/1:68,49:117:99:1096,0,1612 1 205890679 rs12759719 T C 7810.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7839,738,0 1 205896647 rs34803033 A G 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.318;SOR=0.593 GT:AD:DP:GQ:PL 0/1:57,60:117:99:1535,0,1441 1 205901000 rs33943971 G A 2323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.853;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.422;SOR=0.717 GT:AD:DP:GQ:PL 0/1:141,105:246:99:2352,0,3357 1 206230958 rs28632197 G A 4161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.39;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.118;SOR=0.847 GT:AD:DP:GQ:PL 0/1:185,179:364:99:4190,0,4624 1 206230986 rs28676508 G A 3941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=7.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.464;SOR=0.605 GT:AD:DP:GQ:PL 0/1:191,163:354:99:3970,0,4924 1 206231152 rs28529127 G A 2262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.456;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=4.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.192;SOR=1.014 GT:AD:DP:GQ:PL 0/1:95,91:186:99:2291,0,2343 1 206327510 rs61742539 T C 1806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=3.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.936;SOR=0.473 GT:AD:DP:GQ:PL 0/1:99,82:181:99:1835,0,2334 1 206328803 rs41302235 T C 2838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.721;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=0.789;SOR=0.476 GT:AD:DP:GQ:PL 0/1:104,109:213:99:2867,0,2621 1 206647742 rs1539242 A G 4380.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4409,444,0 1 206651143 rs2297544 G A 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.72;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=2.247;SOR=0.85 GT:AD:DP:GQ:PL 0/1:54,39:93:99:848,0,1230 1 206652475 rs140703169 C T 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=1.682;SOR=0.768 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1679,0,1707 1 206680983 rs2095124 A C 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.662;SOR=0.777 GT:AD:DP:GQ:PL 0/1:109,112:221:99:2866,0,2454 1 206711610 rs79017047 G A 1853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-1.302;SOR=0.729 GT:AD:DP:GQ:PL 0/1:102,85:187:99:1882,0,2580 1 206769047 rs11584983 T C 3660.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=1.397 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3689,348,0 1 206773659 rs6662929 A G 2700.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2729,280,0 1 206944233 rs1554286 A G 1505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.846;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.758;SOR=0.811 GT:AD:DP:GQ:PL 0/1:67,62:129:99:1534,0,1568 1 207015957 rs2243191 T C 1883.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.7;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1912,203,0 1 207074905 rs1150258 T C 4671.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4700,459,0 1 207087435 rs167082 C T 2757.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2786,272,0 1 207109116 rs2275531 C T 3903.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.187 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3932,391,0 1 207109167 rs6695632 G A 2198.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=1.576 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2227,207,0 1 207110936 rs291096 T C 4114.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.18;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4143,372,0 1 207135546 rs1572808 G A 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.065;SOR=0.874 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1403,0,1482 1 207139046 rs11576146 A G 2299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=4.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=0.221;SOR=0.42 GT:AD:DP:GQ:PL 0/1:69,96:165:99:2328,0,1734 1 207140440 rs11119933 C T 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.76;ReadPosRankSum=-0.23;SOR=0.857 GT:AD:DP:GQ:PL 0/1:90,53:143:99:1138,0,2102 1 207143422 rs1856746 A G 3558.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.59;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3587,386,0 1 207195779 rs2842726 A G 5241.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5270,482,0 1 207263829 rs6690037 A G 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=7.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.68;ReadPosRankSum=0.31;SOR=0.232 GT:AD:DP:GQ:PL 0/1:33,50:83:99:1330,0,786 1 207269858 rs3813948 T C 395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=1.998;SOR=0.725 GT:AD:DP:GQ:PL 0/1:22,20:42:99:424,0,525 1 207269919 rs8942 C T 458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.134;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.91;ReadPosRankSum=0.294;SOR=0.73 GT:AD:DP:GQ:PL 0/1:37,21:58:99:487,0,909 1 207297680 rs1126618 T C 3473.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3502,336,0 1 207300259 rs2491393 A G 643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.852;SOR=0.582 GT:AD:DP:GQ:PL 0/1:29,27:56:99:672,0,755 1 207304900 rs4844573 T C 806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=9.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-0.018;SOR=0.145 GT:AD:DP:GQ:PL 0/1:32,30:62:99:835,0,931 1 207646322 rs1048971 G A 5006.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5035,514,0 1 207646462 rs17615 G A 3832.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3861,380,0 1 207646898 rs4308977 T C 4110.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4139,416,0 1 207646923 rs17616 G A 4502.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4531,479,0 1 207648173 rs61735651 T C 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.407;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.038;SOR=0.895 GT:AD:DP:GQ:PL 0/1:71,59:130:99:1557,0,1721 1 207653395 rs17617 C A 1875.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1904,201,0 1 207679307 rs4844600 A G 7132.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.792;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.84;MQRankSum=-0.184;QD=28.99;ReadPosRankSum=-0.116;SOR=0.928 GT:AD:DP:GQ:PL 1/1:2,244:246:99:7161,687,0 1 207700348 rs146366639 G A 1627.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.7;QD=29.6;SOR=8.051 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1656,165,0 1 207782916 rs4844609 A T 5863.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5892,576,0 1 207795320 rs2296160 A G 2660.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2689,264,0 1 207850879 rs34509370 C T 6163.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=28.94;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6192,638,0 1 207851611 rs2296158 A G 4614.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.83;QD=29.21;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4643,473,0 1 207872595 rs12729569 A G 6100.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.81;QD=30.35;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6129,602,0 1 207881557 rs6683902 A G 5962.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=28.95;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5991,618,0 1 208062973 rs2745953 A T 4124.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.74;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,126:126:99:4153,378,0 1 208063067 rs2179634 G A 3427.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3456,336,0 1 208207839 rs3736963 G A 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.572;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-0.371;SOR=0.58 GT:AD:DP:GQ:PL 0/1:49,40:89:99:929,0,1136 1 208213125 rs1751580 A G 4231.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.69;SOR=1.304 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4260,366,0 1 208270244 rs3818517 A C 1091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.297;SOR=0.672 GT:AD:DP:GQ:PL 0/1:61,46:107:99:1120,0,1493 1 208390469 rs3748735 C T 3021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.596;SOR=0.771 GT:AD:DP:GQ:PL 0/1:131,123:254:99:3050,0,3337 1 208391098 rs11119014 T C 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.866;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-0.285;SOR=0.776 GT:AD:DP:GQ:PL 0/1:102,98:200:99:2501,0,2524 1 209782343 rs11119314 A G 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=1.24;SOR=0.976 GT:AD:DP:GQ:PL 0/1:68,78:146:99:1809,0,1622 1 209792015 rs5780528 A AC 1721.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.242;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.343;QD=16.4;ReadPosRankSum=0.051;SOR=1.013 GT:AD:DP:GQ:PL 0/1:49,56:105:99:1759,0,1520 1 209799253 rs2179402 A G 8045.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,257:257:99:8074,771,0 1 209804095 rs4844863 G A 4580.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4609,464,0 1 209807972 rs1130667 G A 3717.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.33;SOR=1.549 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3746,345,0 1 209811886 rs2076356 T G 2323.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2352,234,0 1 209823312 rs114295238 G A 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0.707;SOR=0.495 GT:AD:DP:GQ:PL 0/1:92,65:157:99:1420,0,2410 1 209933540 rs2076150 A G 2815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.752;SOR=0.87 GT:AD:DP:GQ:PL 0/1:124,113:237:99:2844,0,3067 1 209936914 rs17015169 C T 1261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=1.088;SOR=0.565 GT:AD:DP:GQ:PL 0/1:43,47:90:99:1290,0,1076 1 209950681 rs649275 T C 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.801;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.83;SOR=0.631 GT:AD:DP:GQ:PL 0/1:63,63:126:99:1559,0,1364 1 209950760 rs669694 C G 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.512;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.552;SOR=0.586 GT:AD:DP:GQ:PL 0/1:77,86:163:99:2128,0,2186 1 210004199 rs585627 C G 1592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.72;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.335;SOR=0.899 GT:AD:DP:GQ:PL 0/1:71,60:131:99:1621,0,2018 1 210006603 rs656566 C T 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.21;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-1.907;SOR=0.632 GT:AD:DP:GQ:PL 0/1:87,83:170:99:2007,0,2014 1 210139222 . CT C 77.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.79;ReadPosRankSum=0.09;SOR=0.846 GT:AD:DP:GQ:PL 0/1:80,18:114:99:115,0,1948 1 210577873 rs2066721 G C 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.575;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.287;SOR=0.92 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1519,0,1454 1 210761462 rs4297293 G C 2389.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.19;SOR=1.577 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2418,216,0 1 210857457 rs1135317 A G 1915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.971;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-1.606;SOR=0.68 GT:AD:DP:GQ:PL 0/1:96,79:175:99:1944,0,2343 1 211280724 rs111658240 TA T 1633.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.133;MLEAC=2;MLEAF=1;MQ=60.57;MQRankSum=0.805;QD=19.68;ReadPosRankSum=-1.018;SOR=1.026 GT:AD:DP:GQ:PL 1/1:9,74:100:59:1669,59,0 1 211451467 rs11577985 T C 748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.066;QD=9.72;ReadPosRankSum=-0.882;SOR=0.563 GT:AD:DP:GQ:PL 0/1:40,37:77:99:777,0,918 1 211452678 rs3767377 G A 363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.8;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.27;ReadPosRankSum=-0.437;SOR=1.368 GT:AD:DP:GQ:PL 0/1:30,14:44:99:392,0,719 1 211840583 rs115185445 G T 954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=5.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-0.295;SOR=1.337 GT:AD:DP:GQ:PL 0/1:59,41:100:99:983,0,1594 1 212142054 rs11322485 GA G 675.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=8.186;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.809;QD=10.09;ReadPosRankSum=2.122;SOR=0.205 GT:AD:DP:GQ:PL 0/1:30,37:79:99:713,0,585 1 212273639 rs3135474 C T 4322.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4351,458,0 1 212274413 rs6540718 A C 3571.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=30.53;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3600,351,0 1 212515613 rs1774249 C T 816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-1.363;SOR=0.446 GT:AD:DP:GQ:PL 0/1:34,39:73:99:845,0,828 1 212560327 rs792449 A G 6345.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6374,627,0 1 212619339 rs4804 T C 1559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.813;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=0.908;SOR=0.607 GT:AD:DP:GQ:PL 0/1:87,67:154:99:1588,0,1998 1 212799870 rs3122713 A G 3032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.716;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=1.913;SOR=0.676 GT:AD:DP:GQ:PL 0/1:152,124:276:99:3061,0,3893 1 212799949 rs3795842 C T 2993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=5.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-1.913;SOR=0.996 GT:AD:DP:GQ:PL 0/1:167,134:301:99:3022,0,4001 1 212900487 rs2244935 A G 3485.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.58;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3514,321,0 1 212911836 rs15702 T C 4856.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4885,498,0 1 212969842 rs11421046 C CT 1585.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=0.392;QD=20.86;ReadPosRankSum=0.852;SOR=0.874 GT:AD:DP:GQ:PL 0/1:11,65:96:31:1588,0,31 1 213009469 rs10864004 A G 4549.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4578,434,0 1 213031948 rs11120047 G C 6885.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.43;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6914,616,0 1 213068595 rs3207090 C T 1582.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.83;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1611,175,0 1 213124871 rs3123305 G A 2210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-1.529;SOR=0.91 GT:AD:DP:GQ:PL 0/1:93,97:190:99:2239,0,2217 1 214492286 rs1134647 G A 5155.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5184,525,0 1 214542819 rs1135352 T C 4556.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4585,452,0 1 214564340 rs7550799 T C 3596.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3625,377,0 1 214571251 rs11580603 A C 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.515;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.054;SOR=0.746 GT:AD:DP:GQ:PL 0/1:53,48:101:99:1095,0,1190 1 214787130 rs2070064 G A 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=1.737;SOR=0.715 GT:AD:DP:GQ:PL 0/1:77,78:155:99:1920,0,1811 1 214814571 rs3795521 C T 1359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=0.484;SOR=0.684 GT:AD:DP:GQ:PL 0/1:69,60:129:99:1388,0,1846 1 214820099 rs3748697 A G 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.551;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.024;SOR=0.879 GT:AD:DP:GQ:PL 0/1:43,38:81:99:1058,0,1184 1 214826196 rs335524 G A 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.424;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=1.621;SOR=0.758 GT:AD:DP:GQ:PL 0/1:45,49:94:99:1206,0,1062 1 214830617 rs438034 A G 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.352;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=1.063;SOR=0.685 GT:AD:DP:GQ:PL 0/1:108,74:182:99:1772,0,2539 1 214837110 rs7289 C G 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.348;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.342;SOR=0.87 GT:AD:DP:GQ:PL 0/1:72,77:149:99:1902,0,1741 1 215792630 . C CTAG 1611.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.879;QD=17.15;ReadPosRankSum=1.02;SOR=1.193 GT:AD:DP:GQ:PL 0/1:50,44:94:99:1649,0,2322 1 215793834 rs14137 G A 3077.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3106,306,0 1 215848587 rs2797234 T C 2416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.895;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=8.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.027;SOR=1.032 GT:AD:DP:GQ:PL 0/1:107,99:206:99:2445,0,2616 1 215848641 rs2797235 T C 7898.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7927,767,0 1 215916683 rs140003076 AAG A 40.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.059;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=-0.813;QD=0.97;ReadPosRankSum=-0.252;SOR=0.78 GT:AD:DP:GQ:PL 0/1:36,6:42:78:78,0,1168 1 215931922 . CT C 74.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.705;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.9;ReadPosRankSum=1.902;SOR=0.751 GT:AD:DP:GQ:PL 0/1:67,16:87:99:112,0,1588 1 216172380 rs10864219 A G 1136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.7;SOR=0.477 GT:AD:DP:GQ:PL 0/1:48,50:98:99:1165,0,1228 1 216219781 rs6657250 A G 4576.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.46;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4605,423,0 1 216348764 rs1805049 C T 6079.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6108,594,0 1 216373476 . G GA 94.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.389;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=5.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.14;ReadPosRankSum=1.179;SOR=0.28 GT:AD:DP:GQ:PL 0/1:69,14:90:99:132,0,1414 1 216592003 rs4253963 T C 4576.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.08;SOR=0.951 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4605,488,0 1 216595306 rs10779261 C T 6737.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6766,669,0 1 216692669 rs945453 C T 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.85;ReadPosRankSum=-3.153;SOR=0.536 GT:AD:DP:GQ:PL 0/1:63,43:106:99:966,0,1625 1 216741314 rs11572766 C T 1708.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1737,174,0 1 217804325 rs944730 G A 3158.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3187,330,0 1 219383867 rs940571 T C 1043.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=33.67;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1072,93,0 1 219383905 rs940570 A G 1824.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=30.93;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1853,177,0 1 220154768 rs1061160 C T 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.988;QD=11.17;ReadPosRankSum=0.759;SOR=0.629 GT:AD:DP:GQ:PL 0/1:37,40:77:99:888,0,895 1 220178717 rs5781162 T TA 584.73 PASS AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,19:19:57:622,57,0 1 220197625 rs2230301 G T 2389.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2418,251,0 1 220207017 rs2647456 C T 1284.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=2.419 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1313,120,0 1 220239448 rs1146773 T C 2298.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.209 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2327,222,0 1 220369745 rs35396665 TA T 607.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.358;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.9;QD=9.5;ReadPosRankSum=-0.573;SOR=0.648 GT:AD:DP:GQ:PL 0/1:32,32:74:99:645,0,657 1 220771740 rs5781180 T TTATA 317.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=0.126;QD=31.77;ReadPosRankSum=0.126;SOR=0.307 GT:AD:DP:GQ:PL 0/1:1,9:10:26:355,0,26 1 220789355 rs369680057 AT A 129.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.271;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=1.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.32;ReadPosRankSum=0.779;SOR=1.179 GT:AD:DP:GQ:PL 0/1:20,10:32:99:167,0,452 1 220921945 rs337188 G C 7615.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.037 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7644,718,0 1 220935081 rs2275575 G A 3669.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3698,385,0 1 220970028 rs2642438 A G 6261.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6290,660,0 1 221053545 rs12141189 T C 3171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.876;SOR=0.724 GT:AD:DP:GQ:PL 0/1:126,130:256:99:3200,0,3232 1 221054609 . G C 1800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-0.058;SOR=0.678 GT:AD:DP:GQ:PL 0/1:70,75:145:99:1829,0,1729 1 221912361 rs1141714 T C 6130.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.5;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,183:183:99:6159,549,0 1 221912808 rs1136448 T C 4417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.53;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=-1.458;SOR=0.619 GT:AD:DP:GQ:PL 0/1:158,170:328:99:4446,0,3538 1 222713501 rs3748663 C A 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=5.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.654;SOR=0.529 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,126:282:99:0|1:222713501_C_A:2723,0,6185 1 222713503 rs3748664 C G 3767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.645;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=4.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=0.15;SOR=0.906 GT:AD:DP:GQ:PGT:PID:PL 0/1:126,157:283:99:1|0:222713501_C_A:3796,0,4811 1 222713621 rs3748665 C T 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.115;SOR=0.496 GT:AD:DP:GQ:PL 0/1:89,73:162:99:1734,0,3196 1 222713631 rs3748666 G C 2212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.577;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=7.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=1.367;SOR=1.297 GT:AD:DP:GQ:PL 0/1:72,76:148:99:2241,0,2666 1 222721288 rs4846382 C T 2208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.319;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=5.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.723;SOR=0.397 GT:AD:DP:GQ:PL 0/1:82,92:174:99:2237,0,2266 1 222737481 rs17464254 C G 223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.59;ReadPosRankSum=-0.867;SOR=0.446 GT:AD:DP:GQ:PL 0/1:26,14:40:99:252,0,655 1 222761771 rs2270705 A G 1433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.188;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-1.088;SOR=0.49 GT:AD:DP:GQ:PL 0/1:65,59:124:99:1462,0,1540 1 222798106 rs3008617 G A 885.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,31:31:93:914,93,0 1 222802006 rs2936053 A G 4593.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.05;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4622,417,0 1 222802803 rs3748626 T G 4668.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4697,473,0 1 222802926 rs3008620 C T 5501.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5530,552,0 1 222825403 rs3002150 G A 891.77 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,30:30:90:920,90,0 1 222826481 rs2291832 G A 2707.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2736,264,0 1 222833538 rs2291835 C G 1370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.313;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.314;SOR=0.653 GT:AD:DP:GQ:PL 0/1:72,55:127:99:1399,0,1881 1 222833601 rs3002153 T C 4261.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4290,441,0 1 222843460 . AT A 1281.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.086;QD=15.44;ReadPosRankSum=1.041;SOR=0.878 GT:AD:DP:GQ:PL 0/1:44,39:83:99:1319,0,1514 1 222919895 rs2378607 T G 2661.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2690,264,0 1 222923351 rs6683071 A G 4332.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4361,435,0 1 223176275 rs61738819 G A 1540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=1.186;SOR=0.903 GT:AD:DP:GQ:PL 0/1:95,67:162:99:1569,0,2532 1 223178478 rs9441940 G A 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.782;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=1.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=-0.228;SOR=0.799 GT:AD:DP:GQ:PL 0/1:145,106:251:99:2536,0,3477 1 223178561 rs9441941 A C 7377.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7406,737,0 1 223283910 rs7512943 A G 4501.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.62;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4530,414,0 1 223567803 rs10907376 G A 13363.8 PASS AC=2;AF=1;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,444:444:99:13392,1331,0 1 223813586 rs35539373 G T 2448.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2477,252,0 1 223814671 rs61825208 A T 4354.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.22;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4383,478,0 1 223816347 rs61825210 A G 2549.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2578,249,0 1 223900408 rs25655 C G 6738.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6767,633,0 1 223905532 rs17596 G A 775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=1.623;SOR=0.953 GT:AD:DP:GQ:PL 0/1:45,37:82:99:804,0,1092 1 223934720 rs17600 G A 3737.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.17 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3766,375,0 1 223951841 rs751128 T C 858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.692;SOR=0.473 GT:AD:DP:GQ:PL 0/1:44,38:82:99:887,0,1054 1 223959959 rs1153949 G A 558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.21;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=-0.444;SOR=0.814 GT:AD:DP:GQ:PL 0/1:40,31:71:99:587,0,926 1 223971861 rs199572474 G A 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=1.262;SOR=0.661 GT:AD:DP:GQ:PL 0/1:88,67:155:99:1442,0,2216 1 223980207 rs1153936 G C 2235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=5.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=0.478;SOR=0.385 GT:AD:DP:GQ:PL 0/1:82,90:172:99:2264,0,2076 1 223984306 rs28364803 G GA 668.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.759;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=9.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=0.473;SOR=1.752 GT:AD:DP:GQ:PL 0/1:50,36:86:99:706,0,971 1 223989966 rs1153933 C T 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.348;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.264;SOR=0.698 GT:AD:DP:GQ:PL 0/1:99,79:178:99:1838,0,2305 1 224008913 rs3738370 G A 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=1.002;SOR=0.473 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1328,0,1666 1 224473849 rs16846031 A C 758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.832;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.447;SOR=0.862 GT:AD:DP:GQ:PL 0/1:42,31:73:99:787,0,994 1 224492746 rs3754090 C T 1101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.56;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=2.436;SOR=0.481 GT:AD:DP:GQ:PL 0/1:73,52:125:99:1130,0,1969 1 224495852 rs7534447 C T 1805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.987;SOR=0.626 GT:AD:DP:GQ:PL 0/1:90,77:167:99:1834,0,2344 1 224505570 rs3066969 T TAA 1834.73 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=42.67;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1872,129,0 1 224517842 rs2896990 C T 914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.35;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=0.637;SOR=0.755 GT:AD:DP:GQ:PL 0/1:59,41:100:99:943,0,1496 1 224621368 rs2405033 G C 3747.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.07;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3776,330,0 1 225155114 rs2501155 A T 233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.206;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.58;ReadPosRankSum=-0.396;SOR=0.776 GT:AD:DP:GQ:PL 0/1:35,16:51:99:262,0,1642 1 225230608 rs2501107 C T 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=-0.331;SOR=0.512 GT:AD:DP:GQ:PL 0/1:98,64:162:99:1433,0,2511 1 225266966 rs3105559 C G 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.215;SOR=0.693 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1623,0,1632 1 225268106 rs115366080 C A 939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.081;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=1.767;SOR=0.966 GT:AD:DP:GQ:PL 0/1:81,42:123:99:968,0,2030 1 225268343 rs3128651 A G 3712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.127;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.46;ReadPosRankSum=-0.612;SOR=0.809 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,96:173:99:0|1:225268343_A_G:3741,0,1782 1 225268346 rs3128652 G A 2281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=-0.847;SOR=0.818 GT:AD:DP:GQ:PGT:PID:PL 0/1:78,93:171:99:0|1:225268343_A_G:2310,0,4147 1 225270409 rs3128655 A T 1270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-1.379;SOR=0.646 GT:AD:DP:GQ:PL 0/1:60,56:116:99:1299,0,1464 1 225273248 rs3128658 G T 919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.006;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.267;SOR=1.054 GT:AD:DP:GQ:PL 0/1:58,39:97:99:948,0,1436 1 225288534 rs3105571 A C 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=0.385;SOR=0.568 GT:AD:DP:GQ:PL 0/1:41,60:101:99:1440,0,926 1 225305572 rs16843988 C G 700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-1.359;SOR=0.582 GT:AD:DP:GQ:PL 0/1:28,26:54:99:729,0,762 1 225334800 rs1480104 T A 722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.233;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=4.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.06;ReadPosRankSum=-0.138;SOR=1.696 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,29:48:99:1|0:225334789_C_CT:751,0,417 1 225340410 rs17578819 G A 1319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=1.58;SOR=0.542 GT:AD:DP:GQ:PL 0/1:89,64:153:99:1348,0,2092 1 225391923 rs192601701 T C 542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=2.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-1.099;SOR=1.136 GT:AD:DP:GQ:PL 0/1:20,25:45:99:571,0,477 1 225439988 rs630120 T C 585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=0.067;SOR=0.858 GT:AD:DP:GQ:PL 0/1:33,29:62:99:614,0,724 1 225445652 rs670255 G T 869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.28;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=-1.015;QD=12.25;ReadPosRankSum=-0.328;SOR=0.963 GT:AD:DP:GQ:PL 0/1:34,37:71:99:898,0,818 1 225477793 rs12042900 T G 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-1.659;SOR=0.785 GT:AD:DP:GQ:PL 0/1:45,45:90:99:1069,0,1092 1 225506294 rs10495237 A G 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-1.821;SOR=0.595 GT:AD:DP:GQ:PL 0/1:47,61:108:99:1432,0,1093 1 225511905 rs10799300 T C 1689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.424;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-0.897;SOR=0.963 GT:AD:DP:GQ:PL 0/1:63,65:128:99:1718,0,1483 1 225528183 rs3856145 C A 1713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.467;SOR=1.069 GT:AD:DP:GQ:PL 0/1:71,73:144:99:1742,0,1650 1 225533684 rs6667999 A G 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-1.489;SOR=0.418 GT:AD:DP:GQ:PL 0/1:53,60:113:99:1453,0,1337 1 225533731 rs12742757 T A 1787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.367;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.134;SOR=0.778 GT:AD:DP:GQ:PL 0/1:92,80:172:99:1816,0,2125 1 225533931 rs17522489 A G 1955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.234;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-1.68;SOR=0.772 GT:AD:DP:GQ:PL 0/1:99,82:181:99:1984,0,2393 1 225534219 rs7527925 T C 1728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.285;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=0.86;SOR=0.431 GT:AD:DP:GQ:PL 0/1:52,61:113:99:1757,0,1274 1 225534348 rs7535953 G A 671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.962;SOR=0.971 GT:AD:DP:GQ:PL 0/1:30,29:59:99:700,0,811 1 225562385 rs10915816 C T 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.86;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=6.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-0.761;SOR=1.294 GT:AD:DP:GQ:PL 0/1:69,45:114:99:1057,0,1662 1 225565015 rs3856154 T C 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.841;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-1.491;SOR=0.954 GT:AD:DP:GQ:PL 0/1:64,80:144:99:1973,0,1425 1 225569241 rs950210 T G 1573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.871;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.74;ReadPosRankSum=-1.094;SOR=0.807 GT:AD:DP:GQ:PL 0/1:42,58:100:99:1602,0,1062 1 225707271 . GA G 201.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.679;ClippingRankSum=0;DP=192;ExcessHet=3.0103;FS=5.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.49;ReadPosRankSum=-0.703;SOR=1.121 GT:AD:DP:GQ:PL 0/1:108,27:160:99:230,0,2378 1 226019599 rs2234699 T C 1449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-0.159;SOR=0.702 GT:AD:DP:GQ:PL 0/1:78,66:144:99:1478,0,1818 1 226019633 rs1051740 T C 1340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.235;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=2.17;SOR=0.68 GT:AD:DP:GQ:PL 0/1:80,58:138:99:1369,0,1751 1 226027067 rs35708670 G GGT,GGTGT 2581.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.188;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.26;MQRankSum=0.736;QD=17.33;ReadPosRankSum=-0.113;SOR=0.767 GT:AD:DP:GQ:PL 1/2:25,52,72:169:99:2619,996,1627,487,0,1426 1 226050512 rs114729361 C T 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.035;SOR=0.754 GT:AD:DP:GQ:PL 0/1:72,87:159:99:2047,0,1866 1 226054333 rs45492299 G A 4727.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4756,493,0 1 226055595 rs2292564 G A 7550.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.913 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7579,745,0 1 226352498 rs2306120 T G 2076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-1.09;SOR=0.636 GT:AD:DP:GQ:PL 0/1:82,91:173:99:2105,0,2003 1 226474132 rs10799347 G A 632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.689;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=-1.718;SOR=0.947 GT:AD:DP:GQ:PL 0/1:50,29:79:99:661,0,1266 1 226570840 rs1805415 T C 2353.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.056;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.58;ReadPosRankSum=0.519;SOR=1.046 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2382,216,0 1 226578099 rs1805403 T C 2801.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2830,270,0 1 226923505 rs708776 G T 6276.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6305,624,0 1 227069677 rs11405 T C 6801.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6830,702,0 1 227069737 rs6759 C T 3174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=4.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.783;SOR=0.934 GT:AD:DP:GQ:PL 0/1:122,138:260:99:3203,0,3005 1 227071525 rs1046240 C T 2238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.899;SOR=0.733 GT:AD:DP:GQ:PL 0/1:92,100:192:99:2267,0,2016 1 227149203 rs11549708 G A 3837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.086;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=1.034;SOR=0.759 GT:AD:DP:GQ:PL 0/1:149,158:307:99:3866,0,3537 1 227172290 rs12593 C T 3303.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.631 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3332,330,0 1 227172935 rs2297416 C G 2526.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2555,249,0 1 227174145 rs7552783 T C 6069.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.24;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,163:163:99:6098,490,0 1 227174210 rs3738725 T C 6572.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6601,654,0 1 227182033 rs2802269 G A 5023.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.01;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5052,553,0 1 227182575 rs1045247 A G 5196.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.35;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5225,568,0 1 227216662 rs1929861 T C 4079.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4108,390,0 1 227216775 rs1929860 C T 2182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=6.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=1.406;SOR=0.786 GT:AD:DP:GQ:PL 0/1:80,94:174:99:2211,0,1865 1 227221123 rs11582863 G A 645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.117;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=2.333;SOR=0.711 GT:AD:DP:GQ:PL 0/1:38,32:70:99:674,0,837 1 227222515 rs61703280 G GACAA 4139.73 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=44.51;SOR=1.305 GT:AD:DP:GQ:PL 1/1:0,93:93:99:4177,282,0 1 227239562 rs34111989 G C 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=-0.231;SOR=0.868 GT:AD:DP:GQ:PL 0/1:27,36:63:99:901,0,629 1 227387361 rs3768434 A G 1088.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1117,115,0 1 227920103 rs3087908 G A 1993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.097;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=4.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=1.227;SOR=0.995 GT:AD:DP:GQ:PL 0/1:99,83:182:99:2022,0,2553 1 227922918 rs2295994 A C 2888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.753;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=1.019;SOR=0.618 GT:AD:DP:GQ:PL 0/1:152,113:265:99:2917,0,3869 1 227923081 rs7419238 G A 7667.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7696,737,0 1 227935444 rs2236359 A G 1986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.055;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-1.987;SOR=0.906 GT:AD:DP:GQ:PL 0/1:107,90:197:99:2015,0,2475 1 228003508 rs41315595 G A 2138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-1.001;SOR=0.712 GT:AD:DP:GQ:PL 0/1:82,89:171:99:2167,0,2039 1 228003839 rs79840641 C T 2949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-2.474;SOR=0.771 GT:AD:DP:GQ:PL 0/1:103,126:229:99:2978,0,2361 1 228033197 rs9426581 A G 4140.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4169,402,0 1 228033333 rs16848162 T A 1856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.85;ReadPosRankSum=1.721;SOR=0.498 GT:AD:DP:GQ:PL 0/1:52,73:125:99:1885,0,1167 1 228112121 rs4653889 A G 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.692;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-1.26;SOR=0.553 GT:AD:DP:GQ:PL 0/1:103,90:193:99:2220,0,2602 1 228113163 rs3795768 A G 4515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-0.499;SOR=0.633 GT:AD:DP:GQ:PL 0/1:194,196:390:99:4544,0,4413 1 228289843 rs1128456 C T 2400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.397;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=2.598;SOR=0.659 GT:AD:DP:GQ:PL 0/1:106,100:206:99:2429,0,2953 1 228353651 rs55873785 G C 3073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.756;SOR=0.877 GT:AD:DP:GQ:PL 0/1:134,116:250:99:3102,0,3831 1 228362682 rs2298014 G A 3495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=-0.038;SOR=0.791 GT:AD:DP:GQ:PL 0/1:128,128:256:99:3524,0,3444 1 228399482 rs11804508 C G 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.363;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=1.204;SOR=0.596 GT:AD:DP:GQ:PL 0/1:123,106:229:99:2636,0,3125 1 228399766 rs55971985 T C 3198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.779;SOR=0.751 GT:AD:DP:GQ:PL 0/1:143,130:273:99:3227,0,3632 1 228402047 rs1620111 A G 3294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.857;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-1.934;SOR=0.833 GT:AD:DP:GQ:PL 0/1:122,127:249:99:3323,0,2915 1 228402121 rs1771487 A G 2368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.62;ReadPosRankSum=1.529;SOR=0.605 GT:AD:DP:GQ:PL 0/1:72,90:162:99:2397,0,1917 1 228402508 rs2776853 C T 2004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.85;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=1.124;SOR=0.906 GT:AD:DP:GQ:PL 0/1:74,83:157:99:2033,0,1972 1 228407010 rs1757158 C T 2535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.653;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=-0.341;SOR=0.799 GT:AD:DP:GQ:PL 0/1:183,115:298:99:2564,0,4477 1 228407260 rs1771484 G A 2761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.797;SOR=0.548 GT:AD:DP:GQ:PL 0/1:126,126:252:99:2790,0,2894 1 228412227 rs1771480 T C 6351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.132;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.54;ReadPosRankSum=1.933;SOR=0.678 GT:AD:DP:GQ:PGT:PID:PL 0/1:162,163:325:99:0|1:228412227_T_C:6380,0,7205 1 228412228 rs1757153 G A 6351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.84;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.37;ReadPosRankSum=2.011;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,164:328:99:0|1:228412227_T_C:6380,0,7205 1 228412308 rs1757152 G A 4133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=3.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.165;SOR=0.738 GT:AD:DP:GQ:PL 0/1:198,170:368:99:4162,0,5028 1 228431095 rs1771455 A G 2810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.34;SOR=0.435 GT:AD:DP:GQ:PL 0/1:108,111:219:99:2839,0,2764 1 228433217 rs2487384 A G 4076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.388;SOR=0.709 GT:AD:DP:GQ:PL 0/1:192,170:362:99:4105,0,4707 1 228434395 rs7517088 T C 4021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=0.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.982;SOR=0.666 GT:AD:DP:GQ:PL 0/1:164,166:330:99:4050,0,4186 1 228434467 rs7517108 T C 3269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.844;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=5.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.307;SOR=0.448 GT:AD:DP:GQ:PL 0/1:114,134:248:99:3298,0,3006 1 228444565 rs7532342 T A 9647.77 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,333:333:99:9676,999,0 1 228452032 rs55706639 G A 4388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0;DB;DP=418;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-1.177;SOR=0.658 GT:AD:DP:GQ:PL 0/1:219,199:418:99:4417,0,5353 1 228461129 rs1188724 A G 3118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=1.005;SOR=0.599 GT:AD:DP:GQ:PL 0/1:113,128:241:99:3147,0,2784 1 228461187 rs185495392 T C 2531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.528;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=5.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.094;SOR=0.442 GT:AD:DP:GQ:PL 0/1:122,107:229:99:2560,0,2926 1 228464248 rs1188721 T G 1636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.436;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.129;SOR=0.759 GT:AD:DP:GQ:PL 0/1:96,67:163:99:1665,0,2313 1 228464276 rs1188722 T C 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.464;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.026;SOR=0.813 GT:AD:DP:GQ:PL 0/1:76,59:135:99:1727,0,2074 1 228464842 rs936885 C G 1583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.917;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=4.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.331;SOR=1.133 GT:AD:DP:GQ:PL 0/1:73,57:130:99:1612,0,1874 1 228465346 rs493945 A G 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.373;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.823;SOR=0.676 GT:AD:DP:GQ:PL 0/1:105,100:205:99:2552,0,2429 1 228465370 rs867599 T G 2852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.09;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.931;SOR=0.769 GT:AD:DP:GQ:PL 0/1:110,108:218:99:2881,0,2427 1 228471379 rs56168609 G C 3167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.46;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.052;SOR=0.766 GT:AD:DP:GQ:PL 0/1:138,139:277:99:3196,0,3396 1 228480282 rs1150908 A G 2608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=0.167;SOR=0.731 GT:AD:DP:GQ:PL 0/1:91,111:202:99:2637,0,2046 1 228481917 rs55702382 G A 2629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.278;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.793;SOR=0.547 GT:AD:DP:GQ:PL 0/1:100,105:205:99:2658,0,2514 1 228482010 rs449133 C T 2929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.267;SOR=0.573 GT:AD:DP:GQ:PL 0/1:117,124:241:99:2958,0,2995 1 228492044 rs1150910 G A 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-2.443;SOR=0.578 GT:AD:DP:GQ:PL 0/1:100,91:191:99:2069,0,2528 1 228494790 rs435776 G A 2466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.148;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.23;SOR=0.774 GT:AD:DP:GQ:PL 0/1:117,107:224:99:2495,0,2828 1 228503677 rs1150912 A G 2896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.753;SOR=0.62 GT:AD:DP:GQ:PL 0/1:151,125:276:99:2925,0,3695 1 228504472 rs1188732 T C 3270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.239;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.464;SOR=0.912 GT:AD:DP:GQ:PL 0/1:147,132:279:99:3299,0,3381 1 228504670 rs11810627 C T 3067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-1.143;SOR=0.813 GT:AD:DP:GQ:PL 0/1:164,131:295:99:3096,0,3901 1 228504701 rs111792077 G GCTCC 3811.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.024;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=0.947;SOR=0.677 GT:AD:DP:GQ:PL 0/1:144,102:246:99:3849,0,6686 1 228505668 rs1188729 C G 3721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.607;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-1.596;SOR=0.581 GT:AD:DP:GQ:PL 0/1:139,144:283:99:3750,0,3896 1 228505699 rs1188728 T C 3078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=2.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.035;SOR=0.655 GT:AD:DP:GQ:PL 0/1:147,129:276:99:3107,0,3787 1 228509427 rs373610 A G 2916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.81;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.304;SOR=0.696 GT:AD:DP:GQ:PL 0/1:129,109:238:99:2945,0,3357 1 228520880 rs416564 C T 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.549;SOR=0.532 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1864,0,2140 1 228520973 rs369909 C G 1603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=0.602;SOR=0.691 GT:AD:DP:GQ:PL 0/1:91,71:162:99:1632,0,2414 1 228523005 rs60787858 T TG 387.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1.438;QD=11.75;ReadPosRankSum=-1.084;SOR=0.831 GT:AD:DP:GQ:PL 0/1:16,17:33:99:425,0,409 1 228524961 rs3795808 C A 2930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.256;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.303;SOR=0.781 GT:AD:DP:GQ:PL 0/1:122,119:241:99:2959,0,2830 1 228525627 rs1757127 C A 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.647;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=4.156;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=1.496;SOR=0.421 GT:AD:DP:GQ:PL 0/1:63,81:144:99:2153,0,1685 1 228526665 rs505629 T C 1670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.893;QD=8.79;ReadPosRankSum=-0.61;SOR=0.736 GT:AD:DP:GQ:PL 0/1:111,79:190:99:1699,0,2845 1 228526742 . C CCACACA 1233.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.08;ClippingRankSum=0;DP=188;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0;QD=13.86;ReadPosRankSum=1.53;SOR=1.042 GT:AD:DP:GQ:PL 0/1:59,30:141:99:1271,0,2549 1 228528412 rs1150916 G A 2188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.148;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.393;SOR=0.922 GT:AD:DP:GQ:PL 0/1:115,85:200:99:2217,0,3190 1 228528563 rs1188710 C G 3423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.33;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=6.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=0.108;SOR=0.408 GT:AD:DP:GQ:PL 0/1:105,125:230:99:3452,0,2779 1 228547901 rs12035900 C T 2384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.185;SOR=0.625 GT:AD:DP:GQ:PL 0/1:139,106:245:99:2413,0,3697 1 228558889 rs202236799 G C 3402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.178;SOR=0.76 GT:AD:DP:GQ:PL 0/1:133,129:262:99:3431,0,3736 1 228559994 rs500049 C T 3970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=-1.657;SOR=0.803 GT:AD:DP:GQ:PL 0/1:144,148:292:99:3999,0,3816 1 228560023 rs202143056 C T 3907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=0.689;SOR=0.634 GT:AD:DP:GQ:PL 0/1:150,158:308:99:3936,0,4042 1 228560139 rs498382 A G 8156.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8185,789,0 1 228560700 rs512253 T C 4091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.06;ReadPosRankSum=-3.314;SOR=0.769 GT:AD:DP:GQ:PL 0/1:131,160:291:99:4120,0,3159 1 228612838 rs2230656 G T 12058.8 PASS AC=2;AF=1;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,412:412:99:12087,1234,0 1 229622162 rs1065675 A G 1396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.062;SOR=0.836 GT:AD:DP:GQ:PL 0/1:65,61:126:99:1425,0,1621 1 229623338 rs1065674 T C 1132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.906;QD=12.73;ReadPosRankSum=-0.153;SOR=0.76 GT:AD:DP:GQ:PL 0/1:39,50:89:99:1161,0,874 1 229631734 rs11805194 T C 1305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.035;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-1.587;SOR=0.563 GT:AD:DP:GQ:PL 0/1:41,54:95:99:1334,0,945 1 229635521 rs10916495 A G 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.309;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.109;SOR=0.763 GT:AD:DP:GQ:PL 0/1:79,82:161:99:2031,0,1725 1 229663064 rs140542677 GAGGAA G 2275.73 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=43.76;SOR=1.48 GT:AD:DP:GQ:PL 1/1:0,52:52:99:2313,157,0 1 229683264 rs3738187 G A 2145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.33;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.082;QD=9.89;ReadPosRankSum=-0.898;SOR=0.775 GT:AD:DP:GQ:PL 0/1:118,99:217:99:2174,0,2683 1 229730452 rs2295625 G A 2872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=4.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.565;SOR=0.496 GT:AD:DP:GQ:PL 0/1:144,119:263:99:2901,0,3727 1 229738170 rs3753886 T G 7796.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7825,795,0 1 229738236 rs4925500 G A 8138.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8167,798,0 1 229772693 rs3811473 T G 6656.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6685,655,0 1 229772932 rs3811474 A G 3956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.587;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=0.164;SOR=0.718 GT:AD:DP:GQ:PL 0/1:153,155:308:99:3985,0,3420 1 229773441 rs3811475 C T 3275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.603;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=5.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-0.346;SOR=1.054 GT:AD:DP:GQ:PL 0/1:127,127:254:99:3304,0,3017 1 229783240 rs2274995 T C 6440.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.11;SOR=1.675 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,146:146:99:1|1:229783236_T_C:6469,439,0 1 229790048 rs7521953 A G 7432.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,264:264:99:7461,790,0 1 230384937 rs3748006 T C 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.189;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-1.224;SOR=0.953 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1202,0,1203 1 230415148 rs2273970 G A 3010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.24;SOR=0.739 GT:AD:DP:GQ:PL 0/1:128,131:259:99:3039,0,2982 1 230561389 rs113202442 C A 3165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.852;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=5.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.431;SOR=0.747 GT:AD:DP:GQ:PL 0/1:158,138:296:99:3194,0,4233 1 230561627 rs138134082 G C 2276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.7;ReadPosRankSum=-1.047;SOR=0.566 GT:AD:DP:GQ:PL 0/1:59,86:145:99:2305,0,1477 1 230841687 rs7080 T C 6421.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6450,615,0 1 230845794 rs699 A G 2549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.675;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=4.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-0.279;SOR=0.981 GT:AD:DP:GQ:PL 0/1:132,108:240:99:2578,0,3082 1 230883466 rs12143120 C T 1017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=1.447;SOR=0.547 GT:AD:DP:GQ:PL 0/1:49,49:98:99:1046,0,1140 1 230895340 rs28359608 C A 523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.76;ReadPosRankSum=2.286;SOR=1.215 GT:AD:DP:GQ:PL 0/1:64,27:91:99:552,0,1735 1 230914706 rs1933630 C A 1171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.222;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-1.917;SOR=0.855 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,47:104:99:0|1:230914706_C_A:1200,0,1493 1 230914729 rs1933631 A C 4458.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.55;SOR=1.255 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,122:122:99:1|1:230914706_C_A:4487,367,0 1 230916260 rs28359687 C T 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.676;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.473;SOR=0.526 GT:AD:DP:GQ:PL 0/1:69,54:123:99:1411,0,1687 1 230923313 rs12731961 C T 1398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.092;SOR=0.825 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1427,0,1547 1 231042732 rs3811502 T A 1872.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.14;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1901,206,0 1 231047310 rs10580953 TAC T 2740.73 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=44.21;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2778,187,0 1 231060736 rs3748775 T C 4719.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.379 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4748,468,0 1 231067236 rs11122624 C T 2912.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=1.265 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2941,282,0 1 231094050 rs60736833 GA G 238.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.353;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=2.094;QD=2.39;ReadPosRankSum=-0.042;SOR=0.726 GT:AD:DP:GQ:PL 0/1:75,25:110:99:276,0,1556 1 231114595 rs11122174 C T 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.763;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=7.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.954;SOR=0.331 GT:AD:DP:GQ:PL 0/1:82,68:150:99:1822,0,2126 1 231401902 rs574553 G A 854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.453;SOR=0.857 GT:AD:DP:GQ:PL 0/1:36,37:73:99:883,0,995 1 231488524 rs2437150 C T 5578.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5607,543,0 1 231557164 rs61750991 C G 2455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.961;SOR=0.778 GT:AD:DP:GQ:PL 0/1:138,99:237:99:2484,0,3814 1 231830295 rs3738401 G A 4680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.426;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=1.784;SOR=0.639 GT:AD:DP:GQ:PL 0/1:193,177:370:99:4709,0,4875 1 232144598 rs821616 A T 6505.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.8;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6534,700,0 1 232535030 rs629939 C T 3370.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3399,336,0 1 232538234 rs17177525 T G 1211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.545;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.057;SOR=0.676 GT:AD:DP:GQ:PL 0/1:45,49:94:99:1240,0,999 1 232564297 rs3210731 T A 2856.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2885,294,0 1 232574921 rs2275307 T C 2477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.604;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=1.29;SOR=0.58 GT:AD:DP:GQ:PL 0/1:131,104:235:99:2506,0,3140 1 232581436 rs12757779 G A 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.487;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.33;SOR=0.84 GT:AD:DP:GQ:PL 0/1:118,115:233:99:2866,0,2925 1 232597987 rs12142629 T A 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.33;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.43;SOR=0.767 GT:AD:DP:GQ:PL 0/1:64,54:118:99:1227,0,1496 1 232650750 rs3795366 A G 7058.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7087,689,0 1 232650867 rs4649383 C T 6201.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6230,619,0 1 232941153 rs12409898 C T 3311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.732;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-1.32;SOR=0.569 GT:AD:DP:GQ:PL 0/1:168,140:308:99:3340,0,4576 1 232941344 rs139841953 C T 2994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.828;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.517;SOR=0.691 GT:AD:DP:GQ:PL 0/1:160,127:287:99:3023,0,3990 1 232941390 rs2814526 C G 3150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.926;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.218;SOR=0.531 GT:AD:DP:GQ:PL 0/1:153,119:272:99:3179,0,4198 1 233398713 rs1033325 C T 1237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=0.758;SOR=0.56 GT:AD:DP:GQ:PL 0/1:73,55:128:99:1266,0,1918 1 233398927 rs1033324 C G 1675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.027;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=9.065;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.19;QD=23.27;ReadPosRankSum=0.431;SOR=0.175 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,43:72:99:0|1:233398927_C_G:1704,0,1079 1 233431241 rs10442595 G A 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.784;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-2.547;SOR=0.645 GT:AD:DP:GQ:PL 0/1:83,88:171:99:2405,0,2137 1 233489707 rs7551511 G T 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=1.76;SOR=0.579 GT:AD:DP:GQ:PL 0/1:84,61:145:99:1415,0,2387 1 233515413 rs1402815 G A 3363.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3392,326,0 1 234041422 rs57010808 G C 2531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.572;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-0.73;SOR=0.664 GT:AD:DP:GQ:PL 0/1:130,107:237:99:2560,0,3045 1 234509259 rs10910420 G C 6594.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=1.452 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6623,608,0 1 234519452 rs58896934 C CT 716.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=29.86;ReadPosRankSum=1.04;SOR=0.392 GT:AD:DP:GQ:PL 1/1:1,23:30:63:678,63,0 1 234529552 rs2175594 C T 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.92;ReadPosRankSum=0.567;SOR=0.601 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,47:108:99:0|1:234529552_C_T:1748,0,3049 1 234529570 rs2175593 G A 1564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.41;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.83;ReadPosRankSum=1.674;SOR=0.648 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,41:93:99:0|1:234529552_C_T:1593,0,2803 1 234546245 rs1141264 C T 470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.592;SOR=0.758 GT:AD:DP:GQ:PL 0/1:20,20:40:99:499,0,500 1 234564864 rs71701823 GAA G 1859.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.959;QD=20.21;ReadPosRankSum=-0.29;SOR=0.522 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1897,0,1605 1 234565078 rs4027042 G GAA 1824.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.772;QD=16.01;ReadPosRankSum=2.159;SOR=0.773 GT:AD:DP:GQ:PL 0/1:57,57:156:99:1862,0,1725 1 234569192 rs3754311 T C 1854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.056;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=9.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.951;SOR=1.024 GT:AD:DP:GQ:PL 0/1:84,78:162:99:1883,0,1992 1 234582651 rs4920246 T C 1822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.776;SOR=0.661 GT:AD:DP:GQ:PL 0/1:75,80:155:99:1851,0,1819 1 234584231 rs2102596 C T 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.726;SOR=0.729 GT:AD:DP:GQ:PL 0/1:44,49:93:99:1002,0,991 1 234601456 . TA T 176.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.617;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.134;QD=3.61;ReadPosRankSum=-1.848;SOR=0.666 GT:AD:DP:GQ:PL 0/1:34,15:62:99:214,0,585 1 234603386 rs270502 G T 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.484;SOR=0.389 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1169,0,1468 1 235324298 rs2295815 T C 2751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.988;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-2.338;SOR=0.776 GT:AD:DP:GQ:PL 0/1:133,111:244:99:2780,0,3006 1 235324545 rs66929873 T A 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.829;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=0.45;SOR=1.143 GT:AD:DP:GQ:PL 0/1:51,56:107:99:1453,0,1086 1 235345346 rs61730876 C T 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.87;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=1.122;SOR=0.697 GT:AD:DP:GQ:PL 0/1:127,103:230:99:2552,0,3042 1 235383188 rs4659654 A G 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=0.502;SOR=0.604 GT:AD:DP:GQ:PL 0/1:36,48:84:99:1136,0,796 1 235392546 rs12731746 T C 652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.86;ReadPosRankSum=0.187;SOR=0.911 GT:AD:DP:GQ:PL 0/1:51,32:83:99:681,0,1349 1 235394510 rs11321831 TA T 375.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0;QD=8.74;ReadPosRankSum=-1.09;SOR=0.292 GT:AD:DP:GQ:PL 0/1:24,19:43:99:413,0,790 1 235543476 rs72412747 TTGTGTGTGTGTGTG T,TTGTGTG 1818.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=44.36;SOR=1.893 GT:AD:DP:GQ:PL 1/2:0,26,15:52:99:1856,723,772,1139,0,1069 1 235600741 rs6666168 A G 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.113;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=1.326;SOR=0.698 GT:AD:DP:GQ:PL 0/1:115,93:208:99:2250,0,2602 1 235647631 rs291387 G T 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.178;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=1.607;SOR=0.914 GT:AD:DP:GQ:PL 0/1:52,48:100:99:1196,0,1263 1 235652513 rs291396 T C 862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.861;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.03;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.235;SOR=0.657 GT:AD:DP:GQ:PL 0/1:31,36:67:99:891,0,626 1 235715523 rs14326 A G 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.841;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-1.409;SOR=0.698 GT:AD:DP:GQ:PL 0/1:76,61:137:99:1332,0,1678 1 235715556 rs423026 C G 1292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.249;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.642;SOR=0.617 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1321,0,1562 1 235747154 rs2774336 A G 629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.361;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=7.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=-1.299;SOR=1.749 GT:AD:DP:GQ:PL 0/1:41,24:65:99:658,0,1044 1 235929596 rs141197189 C A 688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.582;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.5;ReadPosRankSum=1.418;SOR=1.033 GT:AD:DP:GQ:PL 0/1:45,36:81:99:717,0,1059 1 236175327 rs3738531 C A 2451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.622;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.581;SOR=0.626 GT:AD:DP:GQ:PL 0/1:90,98:188:99:2480,0,2446 1 236175339 rs2031487 T C 2457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.298;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=0.429;SOR=0.618 GT:AD:DP:GQ:PL 0/1:88,91:179:99:2486,0,2207 1 236180580 rs3768081 C G 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.022;SOR=0.74 GT:AD:DP:GQ:PL 0/1:89,89:178:99:2175,0,2109 1 236187365 rs3738533 T C 2734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=1.898;SOR=0.599 GT:AD:DP:GQ:PL 0/1:100,115:215:99:2763,0,2362 1 236208773 rs10733133 C T 1999.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=1.573 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2028,189,0 1 236212038 rs6665008 G A 1925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.376;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-1.111;SOR=0.877 GT:AD:DP:GQ:PL 0/1:121,90:211:99:1954,0,2694 1 236413230 rs2477599 T A 1786.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1815,188,0 1 236444973 rs1269025 C T 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.169;QD=9.6;ReadPosRankSum=-0.752;SOR=0.809 GT:AD:DP:GQ:PL 0/1:65,49:114:99:1123,0,1781 1 236557771 rs966365 G A 4568.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.2;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4597,485,0 1 236700807 rs1126407 T A 485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=-1.762;SOR=1.27 GT:AD:DP:GQ:PL 0/1:36,23:59:99:514,0,916 1 236700823 rs1041934 T C 611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=4.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.5;ReadPosRankSum=-0.327;SOR=1.23 GT:AD:DP:GQ:PL 0/1:43,29:72:99:640,0,1084 1 236700857 rs1041935 C T 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.311;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=6.188;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.44;ReadPosRankSum=2.504;SOR=0.884 GT:AD:DP:GQ:PL 0/1:42,31:73:99:644,0,1114 1 236702209 rs1041936 C T 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.36;ReadPosRankSum=2.043;SOR=0.932 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,50:96:99:0|1:236702209_C_T:1983,0,1923 1 236702210 rs1041937 A G 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.15;ReadPosRankSum=1.74;SOR=0.871 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,51:97:99:0|1:236702209_C_T:1983,0,1923 1 236702374 rs2472126 G A 1348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.578;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.008;QD=11.15;ReadPosRankSum=0.335;SOR=0.944 GT:AD:DP:GQ:PL 0/1:60,61:121:99:1377,0,1341 1 236706352 rs2758174 A C 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.173;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.323;SOR=0.675 GT:AD:DP:GQ:PL 0/1:41,32:73:99:865,0,1165 1 236706862 rs2243525 G C 737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.672;SOR=0.779 GT:AD:DP:GQ:PL 0/1:47,33:80:99:766,0,1067 1 236708224 rs2244063 A C 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.476;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=-1.695;SOR=0.882 GT:AD:DP:GQ:PL 0/1:37,48:85:99:1278,0,873 1 236711297 rs2254823 A T 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=0.383;SOR=0.577 GT:AD:DP:GQ:PL 0/1:46,45:91:99:941,0,1127 1 236711323 rs15701 T C 1225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.5;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.801;SOR=1.042 GT:AD:DP:GQ:PL 0/1:51,56:107:99:1254,0,1259 1 236714292 rs373763274 T TAA 336.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=1.133;SOR=0.877 GT:AD:DP:GQ:PL 0/1:22,15:56:99:374,0,653 1 236716959 rs2275685 C T 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.045;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=1.735;SOR=0.722 GT:AD:DP:GQ:PL 0/1:85,76:161:99:1671,0,1848 1 236717926 rs2275687 T C 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=3.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=1.601;SOR=0.814 GT:AD:DP:GQ:PL 0/1:73,57:130:99:1235,0,1651 1 236718620 rs1126627 T C 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.948;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.131;SOR=0.608 GT:AD:DP:GQ:PL 0/1:84,82:166:99:2123,0,2150 1 236719135 rs1885532 T C 1567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.87;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=1.274;SOR=0.66 GT:AD:DP:GQ:PL 0/1:60,63:123:99:1596,0,1399 1 236719193 rs1885533 A G 1407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-1.281;SOR=0.684 GT:AD:DP:GQ:PL 0/1:52,60:112:99:1436,0,1317 1 236719259 rs1885534 G A 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.574;SOR=0.553 GT:AD:DP:GQ:PL 0/1:52,39:91:99:966,0,1425 1 236721610 rs2275688 G A 1676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.798;SOR=0.65 GT:AD:DP:GQ:PL 0/1:74,70:144:99:1705,0,1899 1 236721660 rs2275689 T C 2095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.355;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=7.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.005;SOR=1.066 GT:AD:DP:GQ:PL 0/1:82,81:163:99:2124,0,1918 1 236721731 rs819431 T C 4833.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4862,474,0 1 236729956 rs653737 T C 1370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.23;ReadPosRankSum=-0.391;SOR=0.861 GT:AD:DP:GQ:PL 0/1:34,56:90:99:1399,0,801 1 236744712 rs4518892 C A 861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=0.113;SOR=0.493 GT:AD:DP:GQ:PL 0/1:54,37:91:99:890,0,1502 1 236744720 rs11338847 TA T 669.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=7.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.357;SOR=0.202 GT:AD:DP:GQ:PL 0/1:23,35:66:99:707,0,374 1 236746443 rs2794768 C T 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=0.636;SOR=0.76 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1519,0,2183 1 236748505 rs1006456 T C 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.463;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=6.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=-0.907;SOR=1.327 GT:AD:DP:GQ:PL 0/1:83,50:133:99:1209,0,1971 1 236749649 rs2794763 T C 1573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.481;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.29;ReadPosRankSum=-1.632;SOR=0.471 GT:AD:DP:GQ:PL 0/1:36,55:91:99:1602,0,813 1 236755427 rs2794759 A G 293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.919;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.379;SOR=0.368 GT:AD:DP:GQ:PL 0/1:16,12:28:99:322,0,417 1 236755814 rs2794757 G A 457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=0.249;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 0/1:20,13:33:99:0|1:236755814_G_A:486,0,1133 1 236755837 rs2564739 C T 568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=-0.971;SOR=0.678 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,17:41:99:0|1:236755814_G_A:597,0,1238 1 236758887 rs2794751 T C 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=-0.999;SOR=0.505 GT:AD:DP:GQ:PL 0/1:42,60:102:99:1528,0,1011 1 236767330 rs10802551 A G 1871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.862;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-0.913;SOR=0.744 GT:AD:DP:GQ:PL 0/1:110,78:188:99:1900,0,2630 1 236882303 rs1341864 T C 6770.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6799,719,0 1 236883421 rs1341863 C T 1585.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.82;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1614,171,0 1 236899899 rs11355106 TC T 2935.73 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2973,274,0 1 236902594 rs2288601 C G 4552.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=30.97;SOR=1.5 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4581,440,0 1 237038161 rs1770449 T C 1144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.534;SOR=0.491 GT:AD:DP:GQ:PL 0/1:66,51:117:99:1173,0,1658 1 237054569 rs2229276 A G 2556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.385;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.459;SOR=0.679 GT:AD:DP:GQ:PL 0/1:143,114:257:99:2585,0,3258 1 237058744 rs12070777 C A 2992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=1.834;SOR=0.814 GT:AD:DP:GQ:PL 0/1:150,137:287:99:3021,0,3640 1 237058828 rs1131449 C T 2543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.82;SOR=0.626 GT:AD:DP:GQ:PL 0/1:132,111:243:99:2572,0,3169 1 237060433 rs3820571 G T 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=0.937;SOR=0.516 GT:AD:DP:GQ:PL 0/1:49,48:97:99:1031,0,1093 1 237060945 rs67705775 CT C 249.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.49;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.46;ReadPosRankSum=-0.885;SOR=0.734 GT:AD:DP:GQ:PL 0/1:38,18:70:99:287,0,822 1 237540615 rs10925391 A C 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.998;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.377;SOR=0.72 GT:AD:DP:GQ:PL 0/1:34,37:71:99:924,0,771 1 237551376 rs10754602 T A 871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.819;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.126;SOR=0.466 GT:AD:DP:GQ:PL 0/1:52,40:92:99:900,0,1193 1 237617757 rs3765097 C T 1563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.64;ReadPosRankSum=-0.594;SOR=0.63 GT:AD:DP:GQ:PL 0/1:108,73:181:99:1592,0,2566 1 237620049 rs2045955 T C 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.801;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-1.178;SOR=1.004 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1931,0,1779 1 237711797 rs2253273 A G 4837.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4866,519,0 1 237753074 rs11331089 AT A 884.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.083;SOR=0.605 GT:AD:DP:GQ:PL 0/1:34,46:80:99:922,0,712 1 237801770 rs707189 T C 3885.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.215 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3914,375,0 1 237841390 rs34967813 A G 599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-1.693;SOR=1.176 GT:AD:DP:GQ:PL 0/1:23,26:49:99:628,0,562 1 237863718 rs2797436 T G 2083.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2112,207,0 1 237881770 rs2797441 C T 1271.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1300,135,0 1 237890437 rs2685301 C T 2457.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2486,258,0 1 237893674 rs2797445 C T 1255.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1284,123,0 1 237946964 rs790889 T C 865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=-0.467;SOR=0.416 GT:AD:DP:GQ:PL 0/1:22,37:59:99:894,0,511 1 237951451 rs2256242 A G 523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.132;SOR=0.569 GT:AD:DP:GQ:PL 0/1:24,22:46:99:552,0,636 1 237957161 rs790901 A G 1577.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1606,150,0 1 237957309 rs790900 A C 1951.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1980,192,0 1 240255568 rs140531536 GGGC G 4805.73 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.91;SOR=2.917 GT:AD:DP:GQ:PL 1/1:0,112:112:99:4843,338,0 1 240256822 rs10926124 C A 9838.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9867,932,0 1 240371554 rs12732924 A G 2049.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.45;QD=29.71;SOR=3.226 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2078,203,0 1 240492734 rs3795677 G A 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.46;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.296;SOR=0.632 GT:AD:DP:GQ:PL 0/1:93,88:181:99:1917,0,1993 1 240497265 rs10157874 A C 870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-1.096;SOR=0.575 GT:AD:DP:GQ:PL 0/1:38,37:75:99:899,0,970 1 240975213 rs2275742 T C 2684.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2713,258,0 1 241663902 rs59736583 T TGAGAGA 934.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.041;QD=13.95;ReadPosRankSum=-0.359;SOR=0.623 GT:AD:DP:GQ:PL 0/1:42,25:122:99:972,0,2895 1 241712134 rs11556464 C T 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=1.254;SOR=0.501 GT:AD:DP:GQ:PL 0/1:27,28:55:99:630,0,656 1 241798631 rs3737604 C T 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.57;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.603;SOR=0.757 GT:AD:DP:GQ:PL 0/1:79,78:157:99:1817,0,1929 1 241838057 rs67170285 C T 1875.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.78;SOR=1.203 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:241838057_C_T:1904,138,0 1 241838065 rs66585415 T C 1768.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.22;SOR=1.788 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,40:40:99:1|1:241838057_C_T:1797,126,0 1 241846828 rs41310589 C T 1555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=-2.438;QD=13.65;ReadPosRankSum=-1.039;SOR=0.7 GT:AD:DP:GQ:PL 0/1:48,66:118:99:1584,0,1428 1 241847018 rs10802979 C T 1584.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=1.958 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1613,150,0 1 241954005 rs35435449 TA T 439.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.856;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.778;QD=9.36;ReadPosRankSum=0.164;SOR=1.055 GT:AD:DP:GQ:PL 0/1:24,23:67:99:477,0,362 1 242030151 rs735943 A G 2824.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.216 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2853,275,0 1 242035438 rs4149965 G A 1258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.935;SOR=0.661 GT:AD:DP:GQ:PL 0/1:57,56:113:99:1287,0,1492 1 242042301 rs1047840 G A 4048.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4077,396,0 1 242042545 rs1776148 A G 3979.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4008,384,0 1 242045275 rs1635498 C T 1278.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.21;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1307,140,0 1 242048674 rs9350 C T 3971.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4000,402,0 1 242121052 rs3851305 C G 3049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.94;ReadPosRankSum=-1.652;SOR=0.876 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,80:170:99:0|1:242121052_C_G:3078,0,3512 1 242121061 rs3915586 C T 3040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.8;ReadPosRankSum=-0.456;SOR=0.814 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,82:181:99:0|1:242121052_C_G:3069,0,3731 1 242121540 rs56335758 G A 3508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.113;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.355;SOR=0.709 GT:AD:DP:GQ:PL 0/1:178,156:334:99:3537,0,4101 1 242121796 rs3851304 G T 2996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.641;SOR=0.684 GT:AD:DP:GQ:PL 0/1:161,129:290:99:3025,0,4047 1 242264091 . G GA 93.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.29;ReadPosRankSum=1.343;SOR=0.523 GT:AD:DP:GQ:PL 0/1:31,10:46:99:131,0,664 1 242511556 rs112478548 AACAAAG A 5465.73 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=44.08;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,124:124:99:5503,375,0 1 242687390 rs2810008 G A 2869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.037;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=6.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.246;SOR=1.097 GT:AD:DP:GQ:PL 0/1:125,127:252:99:2898,0,2892 1 243329049 rs3766664 G A 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=54.01;MQRankSum=-4.035;QD=4.77;ReadPosRankSum=2.764;SOR=0.601 GT:AD:DP:GQ:PL 0/1:185,68:253:99:1234,0,4813 1 243329075 rs61833876 T C 789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.152;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=52.77;MQRankSum=-3.011;QD=3.16;ReadPosRankSum=0.164;SOR=0.635 GT:AD:DP:GQ:PL 0/1:200,50:250:99:818,0,5008 1 243354791 rs144272877 C T 67.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=22.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 1 243493907 rs2275155 A T 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=-1.194;SOR=0.619 GT:AD:DP:GQ:PL 0/1:97,73:170:99:1557,0,2213 1 243736210 rs66631932 CT C 672.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.293;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.797;SOR=0.708 GT:AD:DP:GQ:PL 0/1:39,33:110:99:710,0,779 1 245027349 rs6675421 C T 2827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=5.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=2.412;SOR=0.848 GT:AD:DP:GQ:PL 0/1:136,118:254:99:2856,0,3322 1 245851304 rs6701084 A G 7665.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7694,716,0 1 245861571 rs3205034 C T 5504.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5533,560,0 1 246021941 rs2362587 T C 4514.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4543,461,0 1 246670481 rs7520453 C G 2319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.359;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.104;SOR=0.579 GT:AD:DP:GQ:PL 0/1:109,106:215:99:2348,0,2976 1 246707816 rs3124119 T C 866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.994;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.555;SOR=0.72 GT:AD:DP:GQ:PL 0/1:37,35:72:99:895,0,893 1 246707858 rs3129568 A G 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.171;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.647;SOR=1.015 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1155,0,1157 1 246714587 rs10754526 G A 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=4.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.105;SOR=1.334 GT:AD:DP:GQ:PL 0/1:36,31:67:99:807,0,968 1 246720798 rs3124071 G A 3497.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3526,354,0 1 246755124 rs6702823 T C 4536.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4565,451,0 1 247006051 rs12410563 G C 1139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.985;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=0.242;SOR=1.128 GT:AD:DP:GQ:PL 0/1:40,42:82:99:1168,0,1012 1 247024326 rs41304151 G A 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=3.475;MLEAC=1;MLEAF=0.5;MQ=49.71;MQRankSum=-2.938;QD=11.63;ReadPosRankSum=0.297;SOR=0.977 GT:AD:DP:GQ:PL 0/1:89,86:175:99:2063,0,2188 1 247048834 rs2642990 T C 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.878;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.5;MQ=55.89;MQRankSum=-1.311;QD=12.49;ReadPosRankSum=0.849;SOR=0.85 GT:AD:DP:GQ:PL 0/1:62,62:124:99:1577,0,1491 1 247150740 rs3749427 T C 2272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.777;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=1.44;SOR=1.061 GT:AD:DP:GQ:PL 0/1:80,81:161:99:2301,0,2090 1 247151557 rs2642992 A G 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.841;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=5.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=-2.301;SOR=1.28 GT:AD:DP:GQ:PL 0/1:63,39:102:99:1031,0,1570 1 247162658 rs2642973 C T 2867.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2896,285,0 1 247419509 rs1778540 T C 3521.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3550,347,0 1 247419664 rs1778541 C T 4647.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4676,443,0 1 247420421 rs41308154 C T 828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=0.187;SOR=1.234 GT:AD:DP:GQ:PL 0/1:30,34:64:99:857,0,653 1 247587477 rs3806268 G A 5116.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5145,520,0 1 247587531 rs4925543 A G 4217.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.464 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4246,425,0 1 247588053 rs34298354 C T 2710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=0.498;SOR=0.75 GT:AD:DP:GQ:PL 0/1:79,104:183:99:2739,0,2047 1 247614386 rs12070953 T C 1280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.41;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=4.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.26;ReadPosRankSum=-0.627;SOR=0.461 GT:AD:DP:GQ:PL 0/1:96,59:155:99:1309,0,2437 1 247614407 rs12065526 G A 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.215;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=-0.835;SOR=0.785 GT:AD:DP:GQ:PL 0/1:94,52:146:99:1180,0,2397 1 247614553 rs12086048 C T 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=3.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.23;SOR=0.977 GT:AD:DP:GQ:PL 0/1:92,80:172:99:1859,0,2419 1 247614693 rs6695302 C T 6350.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6379,641,0 1 247615261 rs35305980 GA G 1010.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.27;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.231;QD=11.75;ReadPosRankSum=0.361;SOR=0.571 GT:AD:DP:GQ:PL 0/1:51,35:86:99:1048,0,1648 1 247695612 rs6657127 G A 3947.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3976,398,0 1 247695756 rs6697472 T C 3535.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3564,372,0 1 247752019 rs1151687 G C 6284.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6313,585,0 1 247752161 rs10925085 T C 6731.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6760,686,0 1 247752367 rs869111 A G 3916.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3945,389,0 1 247769752 rs61730407 A G 2590.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2619,252,0 1 247835950 rs1151640 T C 5074.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5103,474,0 1 247921100 rs1552812 T G 4262.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.931;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.266;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.45;ReadPosRankSum=1.863;SOR=0.433 GT:AD:DP:GQ:PL 1/1:1,139:140:99:4291,409,0 1 247921352 rs1552813 C T 5169.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5198,510,0 1 247921717 rs10888359 C A 758.77 PASS AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,24:24:72:787,72,0 1 247978087 rs10888248 G A 1464.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1493,144,0 1 247978319 rs6695283 A G 3356.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3385,321,0 1 247978541 rs375198428 AAGG A 4332.73 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=44.21;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,98:98:99:4370,295,0 1 247978996 rs10888249 A G 2412.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2441,243,0 1 248004614 rs6667389 G A 4116.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4145,410,0 1 248004687 rs10888255 C G 4736.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4765,463,0 1 248004775 rs10888256 C T 5072.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5101,534,0 1 248004848 rs4607924 G C 5521.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5550,525,0 1 248004877 rs10888257 C T 8226.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.99;SOR=0.77 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,187:187:99:1|1:248004877_C_T:8255,569,0 1 248004884 rs1339845 T C 8139.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.97;SOR=0.821 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,181:181:99:1|1:248004877_C_T:8168,560,0 1 248005213 rs7522811 G C 2699.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=1.13 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2728,273,0 1 248020556 rs11204523 G C 9168.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,303:303:99:9197,909,0 1 248023966 rs3737277 C T 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.451;SOR=0.539 GT:AD:DP:GQ:PL 0/1:42,36:78:99:848,0,1114 1 248028219 rs946696 G A 2730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.709;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.264;SOR=0.916 GT:AD:DP:GQ:PL 0/1:110,105:215:99:2759,0,2744 1 248039451 rs3811444 C T 3247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.019;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.911;SOR=0.761 GT:AD:DP:GQ:PL 0/1:156,136:292:99:3276,0,3687 1 248039713 rs3811445 A G 4988.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.18;ReadPosRankSum=2.058;SOR=0.338 GT:AD:DP:GQ:PL 1/1:1,159:160:99:5017,444,0 1 248058879 rs6587387 A T 1673.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1702,162,0 1 248059476 rs12139390 A C 2234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.635;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=0.178;SOR=0.58 GT:AD:DP:GQ:PL 0/1:81,88:169:99:2263,0,1803 1 248059779 rs112696640 G GA 1825.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=4.154;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.955;QD=13.94;ReadPosRankSum=-0.041;SOR=0.881 GT:AD:DP:GQ:PL 0/1:63,68:131:99:1863,0,1810 1 248084434 rs11204563 G A 1170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.363;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=15.948;MLEAC=1;MLEAF=0.5;MQ=49.4;MQRankSum=2.607;QD=9.84;ReadPosRankSum=2.313;SOR=1.372 GT:AD:DP:GQ:PL 0/1:73,46:119:99:1199,0,1975 1 248084464 rs11204564 T C 3430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.161;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.307;MLEAC=1;MLEAF=0.5;MQ=45.11;MQRankSum=-0.426;QD=24.16;ReadPosRankSum=2.371;SOR=1.16 GT:AD:DP:GQ:PL 0/1:20,122:142:99:3459,0,109 1 248084471 rs149623571 A G 939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.699;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=10.182;MLEAC=1;MLEAF=0.5;MQ=43.58;MQRankSum=1.648;QD=7.07;ReadPosRankSum=-1.685;SOR=1.636 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,31:133:99:0|1:248084471_A_G:968,0,4159 1 248084473 rs143274587 C A 939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.914;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=10.669;MLEAC=1;MLEAF=0.5;MQ=43.33;MQRankSum=1.516;QD=7.17;ReadPosRankSum=-1.978;SOR=1.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,30:131:99:0|1:248084471_A_G:968,0,4159 1 248084511 rs41315864 T C 3150.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.56;QD=30.89;SOR=1.586 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3179,306,0 1 248084579 rs144850929 G A 143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.714;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=9.848;MLEAC=1;MLEAF=0.5;MQ=40.56;MQRankSum=0.439;QD=2.28;ReadPosRankSum=-1.309;SOR=0.119 GT:AD:DP:GQ:PL 0/1:48,15:63:99:172,0,1393 1 248084609 rs140703773 C T 720.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.78;QD=36.04;SOR=3.056 GT:AD:DP:GQ:PL 1/1:0,20:20:60:749,60,0 1 248084625 rs6692365 C G 202.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.182;ClippingRankSum=-0;DB;DP=13;ExcessHet=3.0103;FS=7.16;MLEAC=1;MLEAF=0.5;MQ=32.84;MQRankSum=1.742;QD=15.6;ReadPosRankSum=0.307;SOR=3.477 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,6:13:99:0|1:248084625_C_G:231,0,276 1 248084627 rs61857490 C T 202.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.088;ClippingRankSum=-0;DB;DP=13;ExcessHet=3.0103;FS=7.16;MLEAC=1;MLEAF=0.5;MQ=32.84;MQRankSum=1.742;QD=15.6;ReadPosRankSum=0.307;SOR=3.477 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,6:13:99:0|1:248084625_C_G:231,0,276 1 248084631 rs28689982 A C 205.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.18;ClippingRankSum=-0;DB;DP=12;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.5;MQ=32.17;MQRankSum=2.113;QD=17.15;ReadPosRankSum=-0.172;SOR=3.912 GT:AD:DP:GQ:PGT:PID:PL 0/1:6,6:12:99:0|1:248084625_C_G:234,0,234 1 248084747 rs4523549 A C 133.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.24;QD=44.34;SOR=2.833 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,3:3:12:1|1:248084747_A_C:161,12,0 1 248084749 rs12142488 C A 133.03 PASS AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.21;QD=33.26;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:12:1|1:248084747_A_C:161,12,0 1 248084825 rs61857492 C T 728.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.455;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=39.27;MQRankSum=-4.321;QD=4.64;ReadPosRankSum=-3.612;SOR=0.807 GT:AD:DP:GQ:PL 0/1:110,47:157:99:757,0,2699 1 248084980 rs4362017 G T 373.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=13.557;MLEAC=1;MLEAF=0.5;MQ=36.75;MQRankSum=0.674;QD=3.14;ReadPosRankSum=0.642;SOR=2.207 GT:AD:DP:GQ:PL 0/1:100,19:119:99:402,0,3049 1 248085011 rs4595394 C G 3188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.466;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.5;MQ=41.09;MQRankSum=4.382;QD=22.78;ReadPosRankSum=-0.229;SOR=0.566 GT:AD:DP:GQ:PL 0/1:33,107:140:99:3217,0,897 1 248085108 rs4625315 C T 916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.605;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=16.375;MLEAC=1;MLEAF=0.5;MQ=52.1;MQRankSum=-4.609;QD=4.17;ReadPosRankSum=-0.186;SOR=1.411 GT:AD:DP:GQ:PL 0/1:171,49:220:99:945,0,4527 1 248085124 rs4590708 G A 4326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.503;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=16.423;MLEAC=1;MLEAF=0.5;MQ=54.3;MQRankSum=3.227;QD=18.89;ReadPosRankSum=0.88;SOR=0.804 GT:AD:DP:GQ:PL 0/1:58,171:229:99:4355,0,1277 1 248112745 rs4925788 G T 4288.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.6;QD=32.25;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4317,399,0 1 248112762 rs4925789 T C 6264.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.3;QD=46.75;SOR=0.886 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,134:134:99:1|1:248112762_T_C:6293,430,0 1 248112763 rs4925790 G A 6289.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.42;QD=46.94;SOR=0.886 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,134:134:99:1|1:248112762_T_C:6318,433,0 1 248112771 rs4925791 C T 6372.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.4;QD=43.06;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,148:148:99:1|1:248112762_T_C:6401,445,0 1 248112809 rs4925583 A G 6183.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.13;QD=34.16;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6212,544,0 1 248112836 rs4925792 A G 6652.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.24;QD=30.8;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6681,647,0 1 248112915 rs10888280 A G 7412.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.73;QD=30.13;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7441,738,0 1 248113026 rs10888281 T A 6164.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.17;QD=28.94;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6193,636,0 1 248113040 rs10888282 A G 6036.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.93;QD=30.03;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6065,602,0 1 248128929 rs6664332 G A 6034.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6063,610,0 1 248343543 rs9435919 C T 3682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=7.007;MLEAC=1;MLEAF=0.5;MQ=56.51;MQRankSum=0.52;QD=12.61;ReadPosRankSum=1.194;SOR=0.615 GT:AD:DP:GQ:PL 0/1:139,153:292:99:3711,0,3585 1 248343945 rs4244171 C G 3611.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.04;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=5.591;MLEAC=1;MLEAF=0.5;MQ=55.1;MQRankSum=-14.207;QD=10.35;ReadPosRankSum=0.481;SOR=0.942 GT:AD:DP:GQ:PL 0/1:206,143:349:99:3640,0,5347 1 248343990 rs4916104 T C 4380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.624;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=4.518;MLEAC=1;MLEAF=0.5;MQ=55.66;MQRankSum=-12.446;QD=11.62;ReadPosRankSum=-0.413;SOR=0.908 GT:AD:DP:GQ:PL 0/1:200,177:377:99:4409,0,4742 1 248366702 rs4916112 G A 4034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.369;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1;QD=11.66;ReadPosRankSum=1.853;SOR=0.628 GT:AD:DP:GQ:PL 0/1:174,172:346:99:4063,0,4596 1 248366792 rs12562957 T C 3388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=0.375;SOR=0.697 GT:AD:DP:GQ:PL 0/1:124,131:255:99:3417,0,3308 1 248402758 rs6666148 C T 5120.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5149,501,0 1 248436456 rs142107755 C A 63.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=10.98;MLEAC=1;MLEAF=0.5;MQ=39.64;MQRankSum=-4.994;QD=0.39;ReadPosRankSum=-0.283;SOR=0.525 GT:AD:DP:GQ:PL 0/1:145,20:165:92:92,0,4386 1 248436611 rs10888338 G A 7189.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-6.481;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=10.957;MLEAC=2;MLEAF=1;MQ=50.76;MQRankSum=4.838;QD=25.96;ReadPosRankSum=4.201;SOR=0.122 GT:AD:DP:GQ:PL 1/1:12,265:277:99:7218,412,0 1 248436616 rs71538179 A G 12583.8 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.15;QD=43.85;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,287:287:99:12612,866,0 1 248436805 rs28399248 T G 12612.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.099;ClippingRankSum=0;DB;DP=469;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=43.34;MQRankSum=4.347;QD=26.89;ReadPosRankSum=-5.207;SOR=0.772 GT:AD:DP:GQ:PL 0/1:64,405:469:99:12641,0,172 1 248436809 rs61832700 G A 2640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.495;ClippingRankSum=0;DB;DP=448;ExcessHet=3.0103;FS=5.42;MLEAC=1;MLEAF=0.5;MQ=42.52;MQRankSum=-2.38;QD=5.89;ReadPosRankSum=-0.158;SOR=1.137 GT:AD:DP:GQ:PGT:PID:PL 0/1:358,90:448:99:0|1:248436809_G_A:2669,0,15760 1 248436811 rs61832701 G C 2640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0;DB;DP=447;ExcessHet=3.0103;FS=5.469;MLEAC=1;MLEAF=0.5;MQ=42.38;MQRankSum=-2.461;QD=5.91;ReadPosRankSum=-0.027;SOR=1.143 GT:AD:DP:GQ:PGT:PID:PL 0/1:358,89:447:99:0|1:248436809_G_A:2669,0,15760 1 248436857 rs137984104 C T 1188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.08;ClippingRankSum=0;DB;DP=418;ExcessHet=3.0103;FS=19.198;MLEAC=1;MLEAF=0.5;MQ=43.16;MQRankSum=-6.974;QD=2.84;ReadPosRankSum=-0.684;SOR=1.683 GT:AD:DP:GQ:PL 0/1:350,68:418:99:1217,0,9081 1 248436972 rs112084843 A G 3979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.879;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=9.444;MLEAC=1;MLEAF=0.5;MQ=47.64;MQRankSum=-5.664;QD=12.84;ReadPosRankSum=3.229;SOR=0.698 GT:AD:DP:GQ:PL 0/1:152,158:310:99:4008,0,3694 1 248457979 rs6667171 C A 5881.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5910,576,0 1 248458419 rs142654576 G C 254.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.311;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=49.734;MLEAC=1;MLEAF=0.5;MQ=50.52;MQRankSum=-8.387;QD=0.93;ReadPosRankSum=-1.38;SOR=4.305 GT:AD:DP:GQ:PL 0/1:241,32:273:99:283,0,6513 1 248458569 rs35216356 T G 1080.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.97;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=9.094;MLEAC=1;MLEAF=0.5;MQ=35.4;MQRankSum=-0.03;QD=7.72;ReadPosRankSum=0.398;SOR=1.099 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,58:140:99:0|1:248458569_T_G:1109,0,3173 1 248458571 rs12137982 T A 2324.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.713;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=9.066;MLEAC=1;MLEAF=0.5;MQ=35.47;MQRankSum=0.04;QD=16.97;ReadPosRankSum=-0.725;SOR=0.545 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,79:137:99:1|0:248458569_T_G:2353,0,2184 1 248458676 rs6678138 T C 4322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.616;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=26.983;MLEAC=1;MLEAF=0.5;MQ=46.28;MQRankSum=5.069;QD=20.39;ReadPosRankSum=0.946;SOR=1.055 GT:AD:DP:GQ:PL 0/1:59,153:212:99:4351,0,905 1 248458689 rs6674940 A G 5338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.659;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=17.982;MLEAC=1;MLEAF=0.5;MQ=49.42;MQRankSum=6.104;QD=23.83;ReadPosRankSum=3.013;SOR=0.739 GT:AD:DP:GQ:PL 0/1:42,182:224:99:5367,0,405 1 248458717 rs12745228 C G 8028.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.02;QD=30.07;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8057,800,0 1 248486913 rs4244185 A G 2543.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=1.434 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2572,269,0 1 248487300 rs4916129 C T 10262.8 PASS AC=2;AF=1;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.92;QD=29.92;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10291,1028,0 1 248487338 rs4916130 C A 10077.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.88;QD=29.64;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,340:340:99:10106,1018,0 1 248487638 rs7555310 A G 12367.8 PASS AC=2;AF=1;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=31.39;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,394:394:99:12396,1181,0 1 248487768 rs7555424 A G 9329.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=31;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,301:301:99:9358,901,0 1 248512064 rs28372410 T G 2354.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.953;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=4.337;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.98;ReadPosRankSum=-0.598;SOR=1.198 GT:AD:DP:GQ:PL 1/1:1,75:76:99:2383,218,0 1 248512094 rs28728105 C T 3219.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3248,317,0 1 248512637 rs2039824 C T 3817.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3846,367,0 1 248512749 rs28377739 G A 4791.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4820,453,0 1 248512767 rs28545014 G T 4251.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4280,439,0 1 248513023 rs28607995 G A 1542.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=2.448 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1571,147,0 1 248524937 . ATGGGACTCTTCAGACAATCCAAACATCCAATGGCCAATATCACCTGGATGGCCAACCACACTGGATGGTCGGATTTCATCCTGT A 165.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.178;ClippingRankSum=0;DP=229;ExcessHet=3.0103;FS=5.81;MLEAC=1;MLEAF=0.5;MQ=59.05;MQRankSum=-9.662;QD=0.86;ReadPosRankSum=1.93;SOR=0.765 GT:AD:DP:GQ:PL 0/1:169,23:192:99:203,0,7047 1 248525053 rs28415565 A T 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.497;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.737;MLEAC=1;MLEAF=0.5;MQ=57.92;MQRankSum=-9.98;QD=4.28;ReadPosRankSum=-1.703;SOR=0.645 GT:AD:DP:GQ:PGT:PID:PL 0/1:150,30:180:99:0|1:248525053_A_T:799,0,6674 1 248525060 rs28491677 T A 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.9;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.5;MQ=57.71;MQRankSum=-10.59;QD=4.89;ReadPosRankSum=-2.416;SOR=0.466 GT:AD:DP:GQ:PGT:PID:PL 0/1:152,32:184:99:0|1:248525053_A_T:928,0,6680 1 248525071 rs28499298 T C 1323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.79;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.14;MQRankSum=-12.437;QD=6.79;ReadPosRankSum=-4.747;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 0/1:150,45:195:99:0|1:248525053_A_T:1352,0,6313 1 248525100 rs73146195 G A 496.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=6.178;MLEAC=1;MLEAF=0.5;MQ=55.26;MQRankSum=-3.08;QD=1.95;ReadPosRankSum=-3.05;SOR=1.251 GT:AD:DP:GQ:PGT:PID:PL 0/1:226,29:255:99:0|1:248525100_G_A:525,0,10181 1 248525135 rs76721536 G A 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.905;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.75;MQRankSum=-1.711;QD=4.23;ReadPosRankSum=-0.115;SOR=0.691 GT:AD:DP:GQ:PGT:PID:PL 0/1:250,50:300:99:0|1:248525100_G_A:1298,0,11376 1 248525138 rs75096121 C T 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.383;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.83;MQRankSum=-1.776;QD=4.19;ReadPosRankSum=0.522;SOR=0.732 GT:AD:DP:GQ:PGT:PID:PL 0/1:255,50:305:99:0|1:248525100_G_A:1307,0,11178 1 248525146 rs28482938 C T 1114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=54.91;MQRankSum=-7.982;QD=3.53;ReadPosRankSum=2.832;SOR=0.743 GT:AD:DP:GQ:PL 0/1:236,80:316:99:1143,0,7131 1 248525193 rs28655275 C T 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.17;MQRankSum=-8.432;QD=4.4;ReadPosRankSum=0.602;SOR=0.714 GT:AD:DP:GQ:PL 0/1:237,86:323:99:1448,0,6088 1 248525285 rs28637620 T C 1759.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.64;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=19.842;MLEAC=1;MLEAF=0.5;MQ=55.92;MQRankSum=-12.892;QD=8.58;ReadPosRankSum=0.448;SOR=1.396 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,52:205:99:0|1:248525285_T_C:1788,0,6443 1 248525290 rs202028348 C T 1950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.935;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=21.279;MLEAC=1;MLEAF=0.5;MQ=55.95;MQRankSum=-12.091;QD=9.52;ReadPosRankSum=-0.17;SOR=1.446 GT:AD:DP:GQ:PGT:PID:PL 0/1:149,56:205:99:0|1:248525285_T_C:1979,0,6339 1 248525291 rs28540568 G C 1959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.993;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=20.807;MLEAC=1;MLEAF=0.5;MQ=55.8;MQRankSum=-11.688;QD=9.75;ReadPosRankSum=-1.177;SOR=1.46 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,59:201:99:0|1:248525285_T_C:1988,0,6264 1 248525328 rs61248663 C CTA 3238.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.77;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=32.184;MLEAC=1;MLEAF=0.5;MQ=57.17;MQRankSum=-7.753;QD=14.27;ReadPosRankSum=-2.524;SOR=1.388 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,87:227:99:0|1:248525328_C_CTA:3276,0,5749 1 248525330 rs56721857 A G 3247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.494;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=33.633;MLEAC=1;MLEAF=0.5;MQ=57.21;MQRankSum=-7.679;QD=14.12;ReadPosRankSum=-2.277;SOR=1.359 GT:AD:DP:GQ:PGT:PID:PL 0/1:141,89:230:99:0|1:248525328_C_CTA:3276,0,5749 1 248525638 rs34079073 CA C 4075.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.081;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.5;MQ=59.01;MQRankSum=4.353;QD=15.26;ReadPosRankSum=0.31;SOR=0.613 GT:AD:DP:GQ:PL 0/1:145,122:267:99:4113,0,5773 1 248525647 rs28405645 C A 5664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.573;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=58.67;MQRankSum=-5.226;QD=20.3;ReadPosRankSum=0.448;SOR=0.784 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,144:279:99:0|1:248525647_C_A:5693,0,5351 1 248525650 rs28602650 C T 5664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.91;MLEAC=1;MLEAF=0.5;MQ=58.56;MQRankSum=-5.451;QD=20.09;ReadPosRankSum=0.237;SOR=0.77 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,145:282:99:0|1:248525647_C_A:5693,0,5349 1 248525657 rs28718027 G A 5541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.021;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.5;MQ=58.26;MQRankSum=-5.429;QD=19.58;ReadPosRankSum=0.65;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,141:283:99:0|1:248525647_C_A:5570,0,5461 1 248525780 rs28698997 C T 3733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=5.93;MLEAC=1;MLEAF=0.5;MQ=56.9;MQRankSum=-3.677;QD=12.08;ReadPosRankSum=0.727;SOR=0.987 GT:AD:DP:GQ:PL 0/1:160,149:309:99:3762,0,4120 1 248550894 rs7418152 T G 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.923;SOR=0.855 GT:AD:DP:GQ:PL 0/1:42,35:77:99:841,0,1001 1 248550970 rs7417616 A G 1268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=0.366;SOR=0.744 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1297,0,1645 1 248550976 rs6587467 T G 4499.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.58;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4528,375,0 1 248551203 rs6700947 T C 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=6.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=1.213;SOR=0.855 GT:AD:DP:GQ:PL 0/1:79,87:166:99:2221,0,2001 1 248551560 rs954474 C T 2241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=2.269;SOR=0.683 GT:AD:DP:GQ:PL 0/1:105,94:199:99:2270,0,2623 1 248551636 rs954475 T G 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.004;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=5.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-3.024;SOR=0.965 GT:AD:DP:GQ:PL 0/1:78,73:151:99:2037,0,1935 1 248569282 rs28667896 A G 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=4.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.66;ReadPosRankSum=0.524;SOR=0.295 GT:AD:DP:GQ:PL 0/1:20,39:59:99:1011,0,455 1 248569369 rs28599722 A G 1503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.118;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.74;ReadPosRankSum=1.465;SOR=0.852 GT:AD:DP:GQ:PL 0/1:41,61:102:99:1532,0,928 1 248616668 rs144808604 C T 2456.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.088;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.5;MQ=38.21;MQRankSum=0.178;QD=12.53;ReadPosRankSum=1.902;SOR=1.041 GT:AD:DP:GQ:PL 0/1:94,102:196:99:2485,0,2560 1 248651927 rs201060805 A G 401.77 SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.501;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=34.763;MLEAC=1;MLEAF=0.5;MQ=53.25;MQRankSum=-7.768;QD=3.98;ReadPosRankSum=1.029;SOR=5.124 GT:AD:DP:GQ:PL 0/1:78,23:101:99:430,0,2096 1 248652023 rs139516854 G A 45.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.061;MLEAC=1;MLEAF=0.5;MQ=40.08;MQRankSum=-3.438;QD=0.27;ReadPosRankSum=1.175;SOR=1.059 GT:AD:DP:GQ:PL 0/1:149,22:171:74:74,0,3749 1 248652058 rs199730299 G A 522.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=6.204;MLEAC=1;MLEAF=0.5;MQ=36.43;MQRankSum=-2.666;QD=3.61;ReadPosRankSum=0.387;SOR=0.595 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,22:145:99:0|1:248652058_G_A:551,0,5120 1 248652061 rs200544370 C T 519.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=7.834;MLEAC=1;MLEAF=0.5;MQ=36.24;MQRankSum=-2.642;QD=3.58;ReadPosRankSum=0.184;SOR=0.58 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,22:145:99:0|1:248652058_G_A:548,0,5142 1 248652071 rs199723306 G C 546.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.968;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=8.842;MLEAC=1;MLEAF=0.5;MQ=33.52;MQRankSum=-2.889;QD=4.21;ReadPosRankSum=-0.412;SOR=0.545 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,20:130:99:0|1:248652058_G_A:575,0,4784 1 248685253 rs9727474 T C 6756.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6785,672,0 1 248722428 . A ACG 53.7 PASS AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25;QD=26.85;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:248722428_A_ACG:90,6,0 1 248722430 . G A 62.74 SNP_MQ_filter AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25;QD=31.37;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:248722428_A_ACG:90,6,0 1 248722451 rs376895464 C T 61.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25;QD=20.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:89,9,0 1 248722507 rs199706827 C T 180.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.638;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=30.72;MQRankSum=-0.319;QD=18.08;ReadPosRankSum=0.319;SOR=1.609 GT:AD:DP:GQ:PL 0/1:3,7:10:65:209,0,65 1 248722566 rs200777722 G A 234.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.789;ClippingRankSum=-0;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.68;MQRankSum=-0.291;QD=13.04;ReadPosRankSum=-0.691;SOR=0.693 GT:AD:DP:GQ:PL 0/1:9,9:18:99:263,0,286 1 248722611 rs200169450 C G 1582.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.758;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=7.786;MLEAC=1;MLEAF=0.5;MQ=34.8;MQRankSum=-0.078;QD=34.41;ReadPosRankSum=-0.521;SOR=0.056 GT:AD:DP:GQ:PL 0/1:7,39:46:99:1611,0,218 1 248722613 rs199532952 G A 1402.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.127;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=19.659;MLEAC=1;MLEAF=0.5;MQ=34.63;MQRankSum=0.127;QD=28.63;ReadPosRankSum=-0.794;SOR=0.015 GT:AD:DP:GQ:PL 0/1:13,36:49:99:1431,0,411 1 248722671 rs140437806 T A 1757.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.081;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=26.486;MLEAC=1;MLEAF=0.5;MQ=38.25;MQRankSum=0.873;QD=21.7;ReadPosRankSum=1.497;SOR=0.009 GT:AD:DP:GQ:PL 0/1:11,70:81:99:1786,0,141 1 248722722 rs199528787 T C 1280.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.851;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=42.233;MLEAC=1;MLEAF=0.5;MQ=37.64;MQRankSum=-3.143;QD=13.34;ReadPosRankSum=-1.519;SOR=2.686 GT:AD:DP:GQ:PGT:PID:PL 0/1:55,41:96:99:0|1:248722722_T_C:1309,0,1904 1 248722739 rs200935922 G C 1540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.257;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=39.691;MLEAC=1;MLEAF=0.5;MQ=41.46;MQRankSum=0.027;QD=14.96;ReadPosRankSum=2.076;SOR=2.425 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,41:103:99:1|0:248722722_T_C:1569,0,2600 1 248722752 . A G 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.219;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=31.879;MLEAC=1;MLEAF=0.5;MQ=43.96;MQRankSum=-0.221;QD=10.97;ReadPosRankSum=1.321;SOR=2.405 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,32:104:99:1|0:248722722_T_C:1169,0,2924 1 248722756 . T A 1092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.037;ClippingRankSum=0;DP=101;ExcessHet=3.0103;FS=26.712;MLEAC=1;MLEAF=0.5;MQ=44.29;MQRankSum=0.224;QD=10.82;ReadPosRankSum=0.965;SOR=2.173 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,29:101:99:1|0:248722722_T_C:1121,0,3011 1 248722767 . T C 882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.701;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=19.387;MLEAC=1;MLEAF=0.5;MQ=44.21;MQRankSum=0.459;QD=8.83;ReadPosRankSum=-2.009;SOR=2.283 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,26:100:99:1|0:248722722_T_C:911,0,3026 1 248722777 rs77589892 T A 1668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.942;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=6.341;MLEAC=1;MLEAF=0.5;MQ=44.49;MQRankSum=0.946;QD=16.86;ReadPosRankSum=-1.532;SOR=1.196 GT:AD:DP:GQ:PL 0/1:45,54:99:99:1697,0,985 1 248722788 . G T 612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.635;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=13.633;MLEAC=1;MLEAF=0.5;MQ=44.24;MQRankSum=1.491;QD=6.13;ReadPosRankSum=-5.414;SOR=2.319 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,21:100:99:1|0:248722722_T_C:641,0,3296 1 248737095 rs200055265 T C 192.84 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.85;QD=32.14;SOR=3.912 GT:AD:DP:GQ:PL 1/1:0,6:6:18:221,18,0 1 248737259 rs189248971 C G 1919.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.52;QD=33.68;SOR=5.247 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1948,171,0 1 248737329 rs75095367 C T 2356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=51.72;MQRankSum=-1.109;QD=10.52;ReadPosRankSum=-1.057;SOR=0.624 GT:AD:DP:GQ:PL 0/1:112,112:224:99:2385,0,2583 1 248737454 rs79750523 A G 3218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.5;MQ=52.63;MQRankSum=-9.865;QD=11.88;ReadPosRankSum=0.458;SOR=0.652 GT:AD:DP:GQ:PL 0/1:126,145:271:99:3247,0,3028 1 248789504 rs1892442 T C 2680.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.116 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2709,264,0 1 248790075 rs1892443 A G 4637.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4666,459,0 1 248801778 rs201643849 A T 2847.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.47;QD=33.5;SOR=2.387 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2876,256,0 1 248801944 rs143010547 TCAGCACG T 11220.7 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.86;QD=43.66;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,257:257:99:11258,775,0 1 248802469 rs199678335 C T 132.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.79;QD=26.58;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,5:5:15:161,15,0 1 248813547 rs201161767 G C 970.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.77;QD=34.67;SOR=5.283 GT:AD:DP:GQ:PL 1/1:0,28:28:84:999,84,0 1 248813827 rs1782241 T C 201.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.298;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=29.039;MLEAC=1;MLEAF=0.5;MQ=33.41;MQRankSum=-1.687;QD=5.17;ReadPosRankSum=1.53;SOR=3.418 GT:AD:DP:GQ:PL 0/1:28,11:39:99:230,0,625 1 248813901 rs144600224 A T 108.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.438;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=31.79;MQRankSum=-1.38;QD=2.22;ReadPosRankSum=-1.278;SOR=0.435 GT:AD:DP:GQ:PL 0/1:40,9:49:99:137,0,923 1 248814052 rs28533004 T A 695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.5;MQ=42.49;MQRankSum=-1.469;QD=5.48;ReadPosRankSum=1.289;SOR=0.935 GT:AD:DP:GQ:PL 0/1:88,39:127:99:724,0,1961 1 248814080 rs1782242 A C 3628.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.31;QD=26.11;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3657,416,0 1 248814126 rs28418327 G A 1127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.187;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.25;MQRankSum=1.476;QD=8.35;ReadPosRankSum=0.563;SOR=0.64 GT:AD:DP:GQ:PL 0/1:81,54:135:99:1156,0,1781 1 248814203 . A G 136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.736;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.47;MQRankSum=-3.165;QD=5.26;ReadPosRankSum=-1.555;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 0/1:20,6:26:99:0|1:248814203_A_G:165,0,768 1 249106348 rs202116012 G C 2823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=12.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.372;SOR=1.025 GT:AD:DP:GQ:PL 0/1:137,119:256:99:2852,0,3695 2 45895 rs4241318 A G 9069.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9098,892,0 2 677295 rs3210390 C T 2416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.981;SOR=0.597 GT:AD:DP:GQ:PL 0/1:114,108:222:99:2445,0,2897 2 1079320 rs4971432 C T 4494.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4523,453,0 2 1133367 rs79642551 G A 1309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.05;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-1.67;SOR=0.615 GT:AD:DP:GQ:PL 0/1:64,61:125:99:1338,0,1438 2 1320143 rs4927635 C T 573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.766;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-1.106;SOR=0.79 GT:AD:DP:GQ:PL 0/1:27,26:53:99:602,0,595 2 1418192 rs9678281 C G 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=1.721;SOR=0.705 GT:AD:DP:GQ:PL 0/1:52,50:102:99:1115,0,1366 2 1460004 rs4927611 G T 2959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.933;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.147;SOR=0.644 GT:AD:DP:GQ:PL 0/1:104,129:233:99:2988,0,2587 2 1481155 rs2280132 G T 5111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0;DB;DP=499;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=2.176;SOR=0.647 GT:AD:DP:GQ:PL 0/1:276,214:490:99:5140,0,7098 2 1481231 rs2175977 G C 5630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.718;ClippingRankSum=0;DB;DP=485;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-0.875;SOR=0.656 GT:AD:DP:GQ:PL 0/1:258,227:485:99:5659,0,7174 2 1647171 rs6730800 T C 7284.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7313,726,0 2 1647242 rs147066927 C A 3826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.021;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=0.906;SOR=0.828 GT:AD:DP:GQ:PL 0/1:113,170:283:99:3855,0,2692 2 1652660 rs3811613 G A 3364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.555;SOR=0.526 GT:AD:DP:GQ:PL 0/1:158,139:297:99:3393,0,4078 2 1652822 rs1863135 T G 10776.8 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.26;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,324:324:99:10805,972,0 2 1664654 rs17841813 A G 2537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.301;SOR=0.928 GT:AD:DP:GQ:PL 0/1:114,114:228:99:2566,0,2722 2 1926437 rs1529667 G T 3323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=3.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=0.484;SOR=0.491 GT:AD:DP:GQ:PL 0/1:95,132:227:99:3352,0,2415 2 3217908 rs11682452 G C 2781.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2810,290,0 2 3391826 rs11127423 C T 5677.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5706,589,0 2 3392075 rs10865541 T C 8651.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.53;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,258:258:99:8680,775,0 2 3392127 rs200381361 C T 4493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.467;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.245;SOR=0.705 GT:AD:DP:GQ:PL 0/1:175,192:367:99:4522,0,4439 2 3392295 rs11686212 A G 10657.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10686,1029,0 2 3469463 rs4971514 G C 2547.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2576,258,0 2 3483205 rs6767 C T 4735.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4764,477,0 2 3504687 rs9950 A G 2761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.594;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=2.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=0.452;SOR=0.526 GT:AD:DP:GQ:PL 0/1:85,112:197:99:2790,0,1918 2 3597974 rs10186193 T C 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.784;SOR=0.433 GT:AD:DP:GQ:PL 0/1:72,77:149:99:1686,0,1772 2 3653842 rs72767191 C A 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.061;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.49;ReadPosRankSum=0.7;SOR=0.697 GT:AD:DP:GQ:PL 0/1:72,49:121:99:1056,0,1721 2 3653844 rs3739147 T C 4163.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.7;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,120:120:99:4192,363,0 2 3673648 rs10170348 G A 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.43;ReadPosRankSum=0.379;SOR=0.601 GT:AD:DP:GQ:PL 0/1:54,40:94:99:821,0,1382 2 3691065 rs34351135 G A 1006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.685;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=1.239;SOR=0.655 GT:AD:DP:GQ:PL 0/1:49,44:93:99:1035,0,1359 2 3691548 rs7567833 A G 3746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.238;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.893;SOR=0.823 GT:AD:DP:GQ:PL 0/1:154,162:316:99:3775,0,3478 2 3721729 rs12105179 A G 2084.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2113,207,0 2 3726163 rs2043080 T C 2936.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2965,311,0 2 3749084 rs11689171 T C 1800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.507;SOR=0.905 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1829,0,1709 2 3749151 rs34308920 GGAA G 6979.73 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=44.46;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,157:157:99:7017,473,0 2 3751507 rs114180540 G T 2958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-1.833;SOR=0.711 GT:AD:DP:GQ:PL 0/1:157,134:291:99:2987,0,3905 2 3751606 rs56104311 C T 2843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1.495;SOR=0.692 GT:AD:DP:GQ:PL 0/1:139,130:269:99:2872,0,3416 2 3800383 rs357969 C T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.003;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=2.158;SOR=0.957 GT:AD:DP:GQ:PL 0/1:79,60:139:99:1473,0,1961 2 3800496 rs357968 C T 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.92;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=1.141;SOR=0.775 GT:AD:DP:GQ:PL 0/1:111,76:187:99:1796,0,2756 2 3826387 rs13021385 T C 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.047;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.42;ReadPosRankSum=2.262;SOR=0.404 GT:AD:DP:GQ:PL 0/1:28,43:71:99:1123,0,634 2 7005369 rs11678810 A G 7292.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7321,681,0 2 7137067 rs364891 A G 5986.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6015,614,0 2 7154632 rs309325 T C 3049.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3078,317,0 2 7154826 rs58700190 A AT 685.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.234;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.792;QD=13.71;ReadPosRankSum=-0.85;SOR=0.465 GT:AD:DP:GQ:PL 0/1:18,32:50:99:723,0,298 2 7164578 rs376219 A G 3154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.41;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-2.218;SOR=0.624 GT:AD:DP:GQ:PL 0/1:110,132:242:99:3183,0,2454 2 8877042 rs61742863 G A 1601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=-0.434;SOR=0.671 GT:AD:DP:GQ:PL 0/1:117,74:191:99:1630,0,3155 2 8998871 rs16866827 T C 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=1.411;SOR=0.746 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1679,0,1664 2 9437413 rs3811600 C T 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.58;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=11.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.645;SOR=1.526 GT:AD:DP:GQ:PL 0/1:74,58:132:99:1394,0,1669 2 9491017 rs4669385 C T 3458.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3487,357,0 2 9496291 rs2709591 T C 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.909;SOR=0.683 GT:AD:DP:GQ:PL 0/1:91,80:171:99:1897,0,2248 2 9528536 rs2715860 G C 2572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=4.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.24;SOR=0.989 GT:AD:DP:GQ:PL 0/1:130,99:229:99:2601,0,3808 2 9552379 rs10929581 C T 494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=4.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.6;ReadPosRankSum=0.028;SOR=1.27 GT:AD:DP:GQ:PL 0/1:49,26:75:99:523,0,2171 2 9552383 rs112462761 A AT 1036.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.853;QD=16.46;ReadPosRankSum=0.376;SOR=0.744 GT:AD:DP:GQ:PL 0/1:30,33:74:99:1074,0,601 2 9985341 rs3214586 TC T 1187.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.27;ReadPosRankSum=-0.317;SOR=0.99 GT:AD:DP:GQ:PL 0/1:25,40:65:99:1225,0,694 2 10045014 rs400917 C T 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.523;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.562;SOR=0.941 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1432,0,1686 2 10045024 rs396190 G A 4849.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.92;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4878,406,0 2 10045147 rs448327 A G 3580.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3609,337,0 2 10050947 rs1054561 T C 1764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.688;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.836;SOR=0.725 GT:AD:DP:GQ:PL 0/1:80,72:152:99:1793,0,1782 2 10050960 rs1054565 A G 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.376;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.558;SOR=0.729 GT:AD:DP:GQ:PL 0/1:74,73:147:99:1825,0,1601 2 10051053 rs10495576 G C 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.534;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.45;ReadPosRankSum=0.355;SOR=1.03 GT:AD:DP:GQ:PL 0/1:37,50:87:99:1372,0,901 2 10059770 rs1820965 G T 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=4.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=1.128;SOR=0.404 GT:AD:DP:GQ:PL 0/1:88,65:153:99:1487,0,2289 2 10126330 rs2303920 G A 1330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-0.873;SOR=0.641 GT:AD:DP:GQ:PL 0/1:44,57:101:99:1359,0,956 2 10126416 rs16867274 A G 1179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.135;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.343;SOR=0.658 GT:AD:DP:GQ:PL 0/1:47,51:98:99:1208,0,1149 2 10188649 rs11687357 A T 4186.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4215,390,0 2 10262920 rs1130609 T G 9973.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,317:317:99:10002,951,0 2 10563233 rs2270304 G A 933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.67;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=1.732;SOR=0.473 GT:AD:DP:GQ:PL 0/1:46,44:90:99:962,0,1068 2 10729897 rs759403 C T 1443.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.58;SOR=1.954 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1472,129,0 2 10743191 rs2287062 G A 1863.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1892,195,0 2 10808776 rs55925118 C CAA 1267.73 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.71;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,29:29:87:1305,87,0 2 10908893 rs1198849 A G 4319.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4348,423,0 2 10915020 rs2969881 A G 1184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=1.543;SOR=0.572 GT:AD:DP:GQ:PL 0/1:60,52:112:99:1213,0,1555 2 10915090 rs58188788 T A 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.06;SOR=0.51 GT:AD:DP:GQ:PL 0/1:53,56:109:99:1276,0,1253 2 10922516 rs1686482 A C 1540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.326;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.288;SOR=0.816 GT:AD:DP:GQ:PL 0/1:67,58:125:99:1569,0,1590 2 10928906 rs1734432 T C 829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=8.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.229;SOR=0.885 GT:AD:DP:GQ:PL 0/1:32,32:64:99:858,0,790 2 10929867 rs11904084 T C 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.815;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=5.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=0.699;SOR=0.337 GT:AD:DP:GQ:PL 0/1:55,66:121:99:1719,0,1317 2 10930903 rs4807 T C 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.839;SOR=0.7 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1301,0,1568 2 10933249 rs4799 C T 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.982;SOR=0.792 GT:AD:DP:GQ:PL 0/1:48,44:92:99:1026,0,1169 2 10933346 rs143770934 T TAGGC 1668.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.903;QD=21.96;ReadPosRankSum=0.189;SOR=0.527 GT:AD:DP:GQ:PL 0/1:33,43:76:99:1706,0,1216 2 10942687 rs4758 C T 822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.489;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-1.162;SOR=0.667 GT:AD:DP:GQ:PL 0/1:44,37:81:99:851,0,951 2 10952790 rs6726687 T C 1684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-2.144;SOR=0.971 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1713,0,1996 2 11053020 rs3732104 A G 10416.8 PASS AC=2;AF=1;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,348:348:99:10445,1044,0 2 11053740 rs3732105 C T 2795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.16;SOR=0.629 GT:AD:DP:GQ:PL 0/1:118,116:234:99:2824,0,2934 2 11300732 rs2271622 C T 1934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=1.042;SOR=0.658 GT:AD:DP:GQ:PL 0/1:100,89:189:99:1963,0,2447 2 11312181 rs12987956 G A 1468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.685;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.052;SOR=0.834 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1497,0,1503 2 11333994 rs2271621 T G 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.855;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=0.488;SOR=0.819 GT:AD:DP:GQ:PL 0/1:34,34:68:99:947,0,761 2 11359120 rs2230774 G T 539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.13;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.201;SOR=0.885 GT:AD:DP:GQ:PL 0/1:28,24:52:99:568,0,682 2 11702661 rs10929757 A C 5527.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5556,546,0 2 11716677 rs201483373 G A 910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=0.268;SOR=1.072 GT:AD:DP:GQ:PL 0/1:56,44:100:99:939,0,1447 2 11738091 rs1435547 T C 2554.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2583,264,0 2 11752635 rs2304399 T C 2651.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2680,254,0 2 11774324 rs2304402 G A 5050.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5079,541,0 2 11810095 rs6432225 G A 6190.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.93;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,188:188:99:6219,564,0 2 11817812 rs4669769 G C 3594.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3623,360,0 2 11905876 rs10209969 C T 1319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.516;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=1.512;SOR=0.613 GT:AD:DP:GQ:PL 0/1:96,60:156:99:1348,0,2413 2 15372562 rs6710817 C T 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.33;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.39;SOR=0.974 GT:AD:DP:GQ:PL 0/1:69,55:124:99:1327,0,1761 2 15378822 rs57516013 G GAATT 3880.73 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=44.1;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3918,265,0 2 15601441 rs7590340 C T 4135.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.57;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4164,449,0 2 15607842 rs4668909 T C 3411.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3440,345,0 2 15614404 rs13014906 T C 3623.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3652,360,0 2 15615910 rs1990754 A G 4559.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4588,483,0 2 15616013 rs1990755 C G 2252.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.771 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2281,223,0 2 15618339 rs1125534 G A 1394.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1423,150,0 2 15674686 rs13029846 T C 1573.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1602,156,0 2 15676686 rs10208972 G A 2405.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=2.062 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2434,222,0 2 15735648 rs2302929 T C 1022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.679;SOR=0.646 GT:AD:DP:GQ:PL 0/1:37,48:85:99:1051,0,837 2 15747393 rs10929378 C T 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.101;SOR=0.55 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1420,0,1638 2 16734284 rs12997119 T C 1749.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1778,180,0 2 16746897 rs62122698 C G 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=4.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=-0.139;SOR=0.428 GT:AD:DP:GQ:PL 0/1:118,85:203:99:1777,0,2912 2 17696573 rs834514 C T 4010.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4039,381,0 2 17698678 rs665312 A G 3811.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3840,364,0 2 17942775 rs1812152 T A 3133.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3162,318,0 2 17954027 rs300175 G A 3022.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3051,317,0 2 17962450 rs300168 A G 3255.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3284,323,0 2 17962518 rs300169 C T 2448.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2477,246,0 2 17998025 rs34069439 A T 3874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=0.65;SOR=0.749 GT:AD:DP:GQ:PL 0/1:127,155:282:99:3903,0,3058 2 17998095 rs35858730 C T 3331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.172;SOR=0.617 GT:AD:DP:GQ:PL 0/1:130,139:269:99:3360,0,3176 2 17998331 rs13001625 T C 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.848;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.08;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-1.179;SOR=0.98 GT:AD:DP:GQ:PL 0/1:91,108:199:99:2869,0,2098 2 18112473 rs4240213 G A 5069.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5098,524,0 2 18113623 rs4832524 A G 1815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=-0.353;SOR=0.774 GT:AD:DP:GQ:PL 0/1:53,73:126:99:1844,0,1257 2 18757501 rs3902946 G C 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.807;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=3.384;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.83;QD=10;ReadPosRankSum=1.545;SOR=0.945 GT:AD:DP:GQ:PL 0/1:109,77:186:99:1888,0,2684 2 18768850 rs16985306 A G 1423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.011;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=1.056;SOR=0.867 GT:AD:DP:GQ:PL 0/1:73,61:134:99:1452,0,1762 2 20131079 rs1191778 T C 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.529;SOR=0.693 GT:AD:DP:GQ:PL 0/1:89,89:178:99:2081,0,2065 2 20131184 rs1191779 C A 3845.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=1.669 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3874,363,0 2 20135283 rs6741091 T C 2222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=0.953;SOR=0.515 GT:AD:DP:GQ:PL 0/1:63,95:158:99:2251,0,1485 2 20192931 rs35973216 G A 563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.725;SOR=0.656 GT:AD:DP:GQ:PL 0/1:29,26:55:99:592,0,719 2 20202929 rs28452699 C T 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.838;SOR=0.719 GT:AD:DP:GQ:PL 0/1:91,82:173:99:2028,0,2383 2 20205680 rs28401180 C T 3113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=0.044;SOR=0.606 GT:AD:DP:GQ:PL 0/1:100,121:221:99:3142,0,2577 2 20205848 rs28598872 G A 2007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.442;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=12.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.161;SOR=1.438 GT:AD:DP:GQ:PL 0/1:102,81:183:99:2036,0,2598 2 20240668 rs3731673 C A 796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=-0.144;SOR=0.826 GT:AD:DP:GQ:PL 0/1:26,30:56:99:825,0,695 2 20403794 rs10205485 A T 7308.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7337,699,0 2 20818764 rs3732149 C T 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.083;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.546;SOR=0.702 GT:AD:DP:GQ:PL 0/1:134,102:236:99:2505,0,3513 2 20818883 rs35579164 G C 3172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.939;SOR=0.968 GT:AD:DP:GQ:PL 0/1:164,140:304:99:3201,0,3966 2 20823724 rs6531248 T C 6201.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6230,636,0 2 20824498 rs2305458 C T 5095.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5124,527,0 2 20838222 rs3796065 C T 1832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=1.942;SOR=0.512 GT:AD:DP:GQ:PL 0/1:87,84:171:99:1861,0,2287 2 20845273 rs2304423 G A 3877.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.59 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3906,369,0 2 20867122 . G GGGCGGC,GGGCGGCGGC 2173.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.36;QD=43.47;SOR=0.994 GT:AD:DP:GQ:PL 1/2:0,6,44:51:99:2211,1789,1729,252,0,106 2 20870579 rs13013489 G A 7329.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7358,750,0 2 20870820 rs78872016 G T 2920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.872;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.774;SOR=0.827 GT:AD:DP:GQ:PL 0/1:151,131:282:99:2949,0,3925 2 20871190 rs4666457 A C 5257.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5286,516,0 2 21224853 rs1801695 C T 2045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.023;SOR=0.597 GT:AD:DP:GQ:PL 0/1:88,83:171:99:2074,0,2416 2 21225281 rs1042034 C T 821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.47;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.367;SOR=0.773 GT:AD:DP:GQ:PL 0/1:38,30:68:99:850,0,1126 2 21225753 rs1042031 C T 1937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.97;SOR=0.638 GT:AD:DP:GQ:PL 0/1:84,84:168:99:1966,0,2095 2 21231524 rs676210 G A 2514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.383;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-2.081;SOR=0.658 GT:AD:DP:GQ:PL 0/1:84,103:187:99:2543,0,2255 2 21232803 rs584542 T C 4120.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4149,387,0 2 21235475 rs568413 T C 3974.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,126:126:99:4003,378,0 2 21238323 rs72653077 G A 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.02;SOR=0.796 GT:AD:DP:GQ:PL 0/1:71,68:139:99:1601,0,1748 2 21245813 rs1801700 G A 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=-0.71;SOR=0.648 GT:AD:DP:GQ:PL 0/1:87,70:157:99:1447,0,2003 2 21250914 rs679899 G A 1842.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1871,189,0 2 23865260 rs642931 T C 2358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.52;ReadPosRankSum=-0.49;SOR=0.462 GT:AD:DP:GQ:PL 0/1:56,96:152:99:2387,0,1214 2 23919375 rs3795942 C T 1568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.069;SOR=0.669 GT:AD:DP:GQ:PL 0/1:69,68:137:99:1597,0,1713 2 23926233 rs72796138 C T 1469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.453;SOR=0.99 GT:AD:DP:GQ:PL 0/1:82,59:141:99:1498,0,2173 2 23926659 rs3795948 T C 3051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.501;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=0.213;SOR=0.672 GT:AD:DP:GQ:PL 0/1:104,123:227:99:3080,0,2304 2 24108652 rs7579201 T C 2206.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.24;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2235,242,0 2 24149439 rs61739076 G A 3667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.749;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=3.339;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=-1.87;SOR=0.509 GT:AD:DP:GQ:PL 0/1:118,157:275:99:3696,0,3068 2 24342505 rs1056122 T C 1524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.473;SOR=0.621 GT:AD:DP:GQ:PL 0/1:72,71:143:99:1553,0,1727 2 24344060 rs33913065 T G 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.902;QD=13.02;ReadPosRankSum=-1.195;SOR=0.854 GT:AD:DP:GQ:PL 0/1:59,75:134:99:1773,0,1437 2 24369674 rs11693860 C T 2085.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.44;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2114,227,0 2 24384424 rs4665667 T C 2163.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2192,204,0 2 24387178 rs113322110 G GC 6269.73 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.38;QD=37.1;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,169:169:99:6307,514,0 2 24413298 rs2288073 A G 5003.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5032,481,0 2 24431184 rs2303291 C T 2870.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2899,303,0 2 24432667 rs2303295 C G 2242.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2271,234,0 2 24432839 rs2303296 A G 3271.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3300,336,0 2 24475205 rs4450560 T C 1617.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1646,162,0 2 24524958 rs7603997 C T 2122.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2151,224,0 2 24905927 rs11125744 G C 3462.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3491,358,0 2 24974945 rs11125763 T G 6329.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6358,633,0 2 25022598 rs1550116 A G 1591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.502;SOR=0.664 GT:AD:DP:GQ:PL 0/1:72,73:145:99:1620,0,1600 2 25046090 rs1127568 T C 5701.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5730,594,0 2 25047408 rs7604576 A G 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.558;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.13;SOR=0.768 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1967,0,1761 2 25050977 rs7566416 T C 7595.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7624,735,0 2 25064157 rs2241758 G C 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.696;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=6.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-1.211;SOR=1.104 GT:AD:DP:GQ:PL 0/1:96,97:193:99:2597,0,2520 2 25064193 rs2241759 G A 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.513;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=6.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-0.316;SOR=0.618 GT:AD:DP:GQ:PL 0/1:132,109:241:99:2503,0,3121 2 25141434 rs61732745 G A 4049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-2.465;SOR=0.587 GT:AD:DP:GQ:PL 0/1:140,160:300:99:4078,0,3448 2 25141538 rs11676272 A G 4997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.991;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=1.829;SOR=0.784 GT:AD:DP:GQ:PL 0/1:132,192:324:99:5026,0,3138 2 25194741 rs7593864 G A 4184.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4213,414,0 2 25314186 rs2918630 T C 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=-1.031;SOR=0.91 GT:AD:DP:GQ:PL 0/1:43,65:108:99:1576,0,984 2 25359422 rs3731631 G A 1282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.395;SOR=1.098 GT:AD:DP:GQ:PL 0/1:57,57:114:99:1311,0,1267 2 25377176 rs2164808 T C 2087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.962;SOR=0.764 GT:AD:DP:GQ:PL 0/1:89,90:179:99:2116,0,2065 2 25469913 rs2276599 C T 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=1.147;SOR=0.751 GT:AD:DP:GQ:PL 0/1:68,76:144:99:1609,0,1591 2 25655772 rs7583475 T C 6248.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6277,653,0 2 25656880 rs1395949 C G 4731.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.4;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4760,390,0 2 25973060 rs33994557 C T 3059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.795;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.541;SOR=0.703 GT:AD:DP:GQ:PL 0/1:117,130:247:99:3088,0,2648 2 25994412 rs71399322 A AG 4172.73 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.75;QD=32.86;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4210,385,0 2 26022277 rs34816614 T C 2426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=4.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.46;ReadPosRankSum=-0.583;SOR=1.071 GT:AD:DP:GQ:PL 0/1:66,91:157:99:2455,0,1571 2 26203678 rs1465878 T C 5833.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5862,552,0 2 26204640 rs6721440 G A 2820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.657;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.986;SOR=0.838 GT:AD:DP:GQ:PL 0/1:132,116:248:99:2849,0,3064 2 26321526 rs11678157 T C 866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.534;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=6.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.177;SOR=0.283 GT:AD:DP:GQ:PL 0/1:34,43:77:99:895,0,845 2 26399214 rs4665830 G A 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-0.866;SOR=0.69 GT:AD:DP:GQ:PL 0/1:90,65:155:99:1500,0,2228 2 26405985 rs10779956 A G 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.864;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.458;SOR=0.667 GT:AD:DP:GQ:PL 0/1:67,55:122:99:1375,0,1671 2 26408064 rs4665833 T C 7890.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7919,761,0 2 26455127 rs11552518 G A 694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.987;SOR=0.518 GT:AD:DP:GQ:PL 0/1:30,33:63:99:723,0,774 2 26477125 rs59947000 G GACT 1794.73 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.77;SOR=1.501 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1832,123,0 2 26502875 rs1056389 T C 862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=0.427;SOR=0.566 GT:AD:DP:GQ:PL 0/1:27,36:63:99:891,0,576 2 26505858 rs17528590 A G 806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=2.04;SOR=0.768 GT:AD:DP:GQ:PL 0/1:27,30:57:99:835,0,686 2 26534250 rs114354727 T C 2867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.43;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=0.14;SOR=0.771 GT:AD:DP:GQ:PL 0/1:116,110:226:99:2896,0,2633 2 26534801 rs7568529 G A 2412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=4.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.525;SOR=0.786 GT:AD:DP:GQ:PL 0/1:144,106:250:99:2441,0,3648 2 26536299 rs11886746 C G 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.342;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-1.45;SOR=0.742 GT:AD:DP:GQ:PL 0/1:85,83:168:99:2093,0,2035 2 26536694 rs2052937 C T 1574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=0.542;SOR=0.559 GT:AD:DP:GQ:PL 0/1:90,72:162:99:1603,0,2170 2 26537499 rs10187359 A C 3366.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=1.751 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3395,309,0 2 26590084 rs6748996 T G 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=0.309;SOR=0.629 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1057,0,1360 2 26607992 rs934280 T C 2830.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2859,267,0 2 26647277 rs7423300 T G 5430.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5459,555,0 2 26667615 rs939820 T C 4474.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.186 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4503,452,0 2 26671544 rs4072407 A G 3149.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=1.365 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3178,326,0 2 26676322 rs1402962 A G 9377.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9406,946,0 2 26679362 rs35313480 G A 2375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=-0.013;SOR=0.504 GT:AD:DP:GQ:PL 0/1:74,96:170:99:2404,0,1789 2 26683777 rs45442103 G A 1688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-2.261;SOR=0.896 GT:AD:DP:GQ:PL 0/1:89,78:167:99:1717,0,2094 2 26696374 rs56054534 C T 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.777;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.198;SOR=0.783 GT:AD:DP:GQ:PL 0/1:87,72:159:99:1738,0,1936 2 26741961 rs13031859 G A 2271.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2300,224,0 2 26798893 rs13002673 A T 3175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.134;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.064;SOR=0.679 GT:AD:DP:GQ:PL 0/1:137,130:267:99:3204,0,3385 2 26799031 rs2272464 G A 2283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.164;SOR=0.797 GT:AD:DP:GQ:PL 0/1:98,99:197:99:2312,0,2494 2 26800422 rs1053807 G A 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.063;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=4.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-1.331;SOR=1.086 GT:AD:DP:GQ:PL 0/1:67,77:144:99:1864,0,1504 2 26804218 rs935171 G A 3025.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.64;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3054,351,0 2 26804247 rs935172 T C 1429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.647;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.646;SOR=0.696 GT:AD:DP:GQ:PL 0/1:69,67:136:99:1458,0,1410 2 26951449 rs1663002 G A 4922.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.451 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4951,473,0 2 27014980 rs12992046 T C 743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=4.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.783;SOR=0.31 GT:AD:DP:GQ:PL 0/1:41,32:73:99:772,0,1060 2 27015118 rs13014800 G A 1083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.523;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-1.547;SOR=0.71 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1112,0,1137 2 27015610 rs34367546 CCA C 1377.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.6;ReadPosRankSum=1.948;SOR=0.7 GT:AD:DP:GQ:PL 0/1:46,37:83:99:1415,0,1907 2 27246285 rs10865456 C T 2056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.377;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.34;SOR=0.721 GT:AD:DP:GQ:PL 0/1:87,82:169:99:2085,0,1999 2 27260469 rs1124649 G A 2516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.995;SOR=0.728 GT:AD:DP:GQ:PL 0/1:131,116:247:99:2545,0,3272 2 27279013 rs2278593 A G 1651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.443;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.095;SOR=0.595 GT:AD:DP:GQ:PL 0/1:65,66:131:99:1680,0,1558 2 27290525 rs11681145 A G 2547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=-0.79;SOR=0.86 GT:AD:DP:GQ:PL 0/1:74,95:169:99:2576,0,1705 2 27303755 rs2736976 A G 6411.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.996;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.41;ReadPosRankSum=-0.738;SOR=0.809 GT:AD:DP:GQ:PL 1/1:2,216:218:99:6440,605,0 2 27315252 rs2304681 G A 4807.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4836,515,0 2 27323385 rs1131375 C T 4326.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4355,453,0 2 27351948 rs6715286 T G 7252.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7281,722,0 2 27355454 rs4665948 A C 8160.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8189,816,0 2 27424636 rs1395 G A 1716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-0.919;SOR=0.768 GT:AD:DP:GQ:PL 0/1:93,84:177:99:1745,0,2089 2 27428295 rs1275524 A G 5118.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5147,514,0 2 27428877 rs1275527 C G 2737.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2766,282,0 2 27435250 rs1275533 A G 6918.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6947,639,0 2 27440785 rs1275536 C T 3942.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3971,399,0 2 27460968 rs1141313 A G 1865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.236;SOR=0.809 GT:AD:DP:GQ:PL 0/1:69,81:150:99:1894,0,1576 2 27462076 rs3739092 C T 3016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=-0.304;SOR=0.958 GT:AD:DP:GQ:PL 0/1:88,118:206:99:3045,0,2093 2 27592312 . A T 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.762;ClippingRankSum=0;DP=227;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-1.852;SOR=0.797 GT:AD:DP:GQ:PL 0/1:118,109:227:99:2636,0,2679 2 27708007 . TA T 87.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.07;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.37;ReadPosRankSum=1.491;SOR=0.71 GT:AD:DP:GQ:PL 0/1:26,11:42:99:125,0,617 2 27730940 rs1260326 T C 1309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.995;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.309;SOR=0.906 GT:AD:DP:GQ:PL 0/1:46,60:106:99:1338,0,1095 2 27801403 rs1919125 C G 6036.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.72;SOR=0.769 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,135:135:99:1|1:27801403_C_G:6065,409,0 2 27801418 rs1919126 C A 6308.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.81;SOR=0.749 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,144:144:99:1|1:27801403_C_G:6337,439,0 2 27802805 rs3811644 A G 5198.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5227,476,0 2 27804432 rs28381983 T C 15943.8 PASS AC=2;AF=1;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.82;QD=30.14;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,529:529:99:15972,1557,0 2 27838058 rs11127071 C A 2704.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2733,294,0 2 27857992 rs4666009 T A 1306.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.8;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1335,141,0 2 28761257 rs7589169 A G 5135.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5164,524,0 2 28761981 rs6753929 G C 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=1.148;SOR=0.636 GT:AD:DP:GQ:PL 0/1:62,65:127:99:1510,0,1576 2 28789643 rs10186460 T C 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.281;SOR=0.83 GT:AD:DP:GQ:PL 0/1:57,59:116:99:1328,0,1312 2 28821613 rs35746006 C T 605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.12;ReadPosRankSum=1.819;SOR=0.612 GT:AD:DP:GQ:PL 0/1:67,32:99:99:634,0,1622 2 28824793 rs7601771 C G 1559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.225;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.14;ReadPosRankSum=0.045;SOR=0.925 GT:AD:DP:GQ:PL 0/1:44,59:103:99:1588,0,1017 2 28827625 rs34289907 C T 1242.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.802;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.07;ReadPosRankSum=-2.208;SOR=1.057 GT:AD:DP:GQ:PL 0/1:92,62:154:99:1271,0,2094 2 28827644 rs36116681 A G 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.312;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.69;ReadPosRankSum=-1.82;SOR=1.019 GT:AD:DP:GQ:PL 0/1:82,45:127:99:1005,0,1860 2 28855918 rs34314459 A AG 3713.73 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=35.04;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3751,319,0 2 29001691 rs1128416 A G 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.315;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=8.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.411;SOR=1.863 GT:AD:DP:GQ:PL 0/1:33,25:58:99:803,0,841 2 29092679 rs4233729 T C 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.076;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-1.248;SOR=0.639 GT:AD:DP:GQ:PL 0/1:95,82:177:99:2104,0,2120 2 29092850 rs4666122 G T 1785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.971;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.644;SOR=0.698 GT:AD:DP:GQ:PL 0/1:93,77:170:99:1814,0,2451 2 29129418 rs11688605 A G 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.535;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=-0.055;QD=13.27;ReadPosRankSum=0.696;SOR=0.399 GT:AD:DP:GQ:PL 0/1:49,54:103:99:1395,0,1137 2 29135468 rs6715296 C G 4433.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4462,454,0 2 29152456 rs1140697 A G 1841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.225;SOR=0.529 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1870,0,2047 2 29169612 rs3087649 T C 4692.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4721,456,0 2 29222070 rs13009279 G A 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.136;SOR=0.607 GT:AD:DP:GQ:PL 0/1:116,108:224:99:2327,0,2844 2 29225502 rs72786178 T G 5896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.06;ReadPosRankSum=-1.08;SOR=0.61 GT:AD:DP:GQ:PGT:PID:PL 0/1:141,153:294:99:0|1:29225502_T_G:5925,0,6875 2 29225504 rs72786179 T C 5896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.33;ReadPosRankSum=-0.65;SOR=0.612 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,150:290:99:0|1:29225502_T_G:5925,0,6875 2 29226498 rs12613325 G A 3499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=1.806;SOR=0.688 GT:AD:DP:GQ:PL 0/1:148,158:306:99:3528,0,3311 2 29226512 rs12623297 A G 8423.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=0.86 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8452,885,0 2 29226559 rs12619829 C T 4907.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.29;SOR=1.927 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4936,456,0 2 29240060 rs11127202 A G 2004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=6.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-0.455;SOR=0.721 GT:AD:DP:GQ:PL 0/1:110,92:202:99:2033,0,2617 2 29240673 rs35166194 G A 2842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.235;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.953;SOR=0.539 GT:AD:DP:GQ:PL 0/1:104,112:216:99:2871,0,2457 2 29240686 rs34261417 A C 2986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.003;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.575;SOR=0.707 GT:AD:DP:GQ:PL 0/1:113,119:232:99:3015,0,2478 2 29240783 rs1109758 A G 8470.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8499,827,0 2 29245933 rs13420380 G A 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=-2.312;SOR=0.879 GT:AD:DP:GQ:PL 0/1:57,38:95:99:920,0,1418 2 29246044 rs6721861 T C 1877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.818;SOR=0.693 GT:AD:DP:GQ:PL 0/1:86,86:172:99:1906,0,1959 2 29256374 rs60403047 C T 2241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.207;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.351;SOR=0.668 GT:AD:DP:GQ:PL 0/1:116,100:216:99:2270,0,2723 2 29274720 rs895591 A G 4482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.24;ReadPosRankSum=-0.883;SOR=0.774 GT:AD:DP:GQ:PGT:PID:PL 0/1:115,118:233:99:0|1:29274720_A_G:4511,0,6275 2 29274730 rs7577483 G T 4561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.813;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.25;ReadPosRankSum=0.623;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,126:250:99:0|1:29274720_A_G:4590,0,6466 2 29366830 rs3213947 A G 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.486;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.447;SOR=0.357 GT:AD:DP:GQ:PL 0/1:43,45:88:99:1155,0,1097 2 29383256 rs3100246 G T 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.87;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.172;SOR=0.688 GT:AD:DP:GQ:PL 0/1:84,79:163:99:1771,0,2001 2 29416366 rs1881421 G C 2650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.137;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=7.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.54;SOR=0.72 GT:AD:DP:GQ:PL 0/1:113,101:214:99:2679,0,3002 2 29416481 rs1881420 T C 3172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.956;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=-0.661;SOR=0.54 GT:AD:DP:GQ:PL 0/1:109,124:233:99:3201,0,2655 2 29416572 rs1670283 T C 8307.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,270:270:99:8336,810,0 2 29446202 rs4622670 G A 1339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.673;SOR=0.971 GT:AD:DP:GQ:PL 0/1:69,59:128:99:1368,0,1719 2 29449819 rs2293563 C T 1986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.349;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=0.81;SOR=0.651 GT:AD:DP:GQ:PL 0/1:134,86:220:99:2015,0,3122 2 29455267 rs2256740 A G 2923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.918;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=3.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=0.218;SOR=0.509 GT:AD:DP:GQ:PL 0/1:102,117:219:99:2952,0,2273 2 29543663 rs2293564 T C 5791.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5820,555,0 2 29940529 rs2246745 A T 3435.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3464,350,0 2 30143499 rs4358080 G C 6202.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6231,615,0 2 30682470 rs55723517 A T 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=0.427;SOR=0.856 GT:AD:DP:GQ:PL 0/1:22,36:58:99:843,0,497 2 30975961 rs62142192 G T 869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.174;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.8;ReadPosRankSum=0.273;SOR=1.008 GT:AD:DP:GQ:PL 0/1:86,42:128:99:898,0,2096 2 30980940 rs508405 C T 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.049;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-1.212;SOR=0.607 GT:AD:DP:GQ:PL 0/1:76,82:158:99:1809,0,1914 2 30986989 rs579016 G T 3866.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=1.505 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3895,396,0 2 30987041 rs145281928 G C 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.258;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-1.219;SOR=0.594 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2078,0,2073 2 31009977 rs1915125 G C 3450.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=29;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3479,355,0 2 31399988 rs4592896 C T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.296;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-0.798;SOR=0.6 GT:AD:DP:GQ:PL 0/1:64,65:129:99:1473,0,1362 2 31410653 rs7422120 C T 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=1.103;SOR=0.79 GT:AD:DP:GQ:PL 0/1:62,63:125:99:1480,0,1455 2 31411184 rs1465972 C A 1145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.115;SOR=0.885 GT:AD:DP:GQ:PL 0/1:41,52:93:99:1174,0,968 2 31414807 rs1562022 C G 6068.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6097,569,0 2 31423443 rs17011001 G A 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.11;ReadPosRankSum=1.369;SOR=0.65 GT:AD:DP:GQ:PL 0/1:87,51:138:99:1148,0,2170 2 31570376 rs1366813 T C 7813.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7842,783,0 2 31571241 rs13415401 G C 3088.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3117,309,0 2 31571786 rs1884725 A G 3300.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3329,350,0 2 31589847 rs2295475 G A 2670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=4.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.538;SOR=0.477 GT:AD:DP:GQ:PL 0/1:127,121:248:99:2699,0,3242 2 31600017 rs45471294 C T 2259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.197;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=3.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-0.661;SOR=0.611 GT:AD:DP:GQ:PL 0/1:92,95:187:99:2288,0,2077 2 31805675 rs522638 A G 7715.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.26 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7744,732,0 2 31805706 rs523349 G C 8676.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8705,867,0 2 31805880 rs142200057 A AG 7662.73 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=35.31;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,217:217:99:7700,653,0 2 32117217 . GA G 50.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.227;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.91;ReadPosRankSum=-0.944;SOR=0.631 GT:AD:DP:GQ:PL 0/1:45,11:61:88:88,0,1072 2 32475109 rs455060 G A 4781.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4810,465,0 2 32476390 rs408813 T G 5298.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5327,521,0 2 32667182 rs60197615 G C 4651.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4680,458,0 2 32712875 rs2366891 A C 3049.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.93;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.5;ReadPosRankSum=1.281;SOR=0.558 GT:AD:DP:GQ:PL 1/1:1,99:100:99:3078,288,0 2 32713706 rs2366894 A T 2605.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2634,261,0 2 32740138 rs34757266 T C 692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.937;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=5.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.87;ReadPosRankSum=0.486;SOR=1.28 GT:AD:DP:GQ:PL 0/1:84,34:118:99:721,0,2035 2 32822957 rs2710625 G A 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=-1.504;SOR=0.689 GT:AD:DP:GQ:PL 0/1:110,74:184:99:1537,0,2605 2 32855615 rs2710623 A G 3233.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3262,305,0 2 32961745 rs10200333 T A 4229.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.927;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=4.483;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.97;ReadPosRankSum=-0.687;SOR=1.277 GT:AD:DP:GQ:PL 1/1:1,145:146:99:4258,427,0 2 32983526 rs2273665 C T 5642.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5671,554,0 2 33412077 rs1065324 G A 5062.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5091,511,0 2 33413640 rs6712473 G T 2403.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.387 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2432,239,0 2 33447202 rs2290448 C T 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.25;SOR=0.645 GT:AD:DP:GQ:PL 0/1:51,41:92:99:901,0,1212 2 33540248 rs1058840 G A 3182.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3211,324,0 2 33572555 rs6706620 G A 5355.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5384,556,0 2 33585796 rs4422143 T C 3318.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3347,330,0 2 33764286 rs7592762 T C 3670.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3699,372,0 2 36739553 rs848526 T C 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.63;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=0.336;SOR=1.075 GT:AD:DP:GQ:PL 0/1:81,57:138:99:1394,0,2036 2 36806021 rs2072534 G A 870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.085;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-1.375;SOR=1.238 GT:AD:DP:GQ:PL 0/1:38,32:70:99:899,0,1039 2 36810586 rs14291 T C 621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.01;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.493;SOR=0.57 GT:AD:DP:GQ:PL 0/1:29,29:58:99:650,0,650 2 36825137 rs1544655 G A 4187.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=30.13;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4216,417,0 2 36825170 rs2287104 T C 4515.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.774 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4544,440,0 2 37076594 rs62132521 T C 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.388;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.448;SOR=0.791 GT:AD:DP:GQ:PL 0/1:60,61:121:99:1491,0,1496 2 37094945 rs2540923 A G 1144.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1173,114,0 2 37229453 rs145906870 G A 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.698;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-2.462;SOR=1.177 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1418,0,1584 2 37230728 rs1007823 T C 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.279;SOR=0.751 GT:AD:DP:GQ:PL 0/1:39,55:94:99:1239,0,797 2 37241050 rs17020125 G A 2767.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2796,297,0 2 37255806 rs17020143 C T 455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.23;ReadPosRankSum=-0.254;SOR=1.147 GT:AD:DP:GQ:PL 0/1:42,21:63:99:484,0,1089 2 37276993 . TAA T 388.27 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=4.623;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=0.571;QD=22.84;ReadPosRankSum=-1.536;SOR=0.323 GT:AD:DP:GQ:PL 0/1:5,12:43:99:422,0,202 2 37296092 rs76447294 A G 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-0.52;SOR=0.498 GT:AD:DP:GQ:PL 0/1:45,37:82:99:821,0,1054 2 37306340 rs6758981 T C 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=7.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.91;SOR=1.117 GT:AD:DP:GQ:PL 0/1:37,51:88:99:1253,0,873 2 37306343 rs6743906 G A 3379.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.55;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3408,271,0 2 37317869 rs4670654 C T 1117.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.26;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1146,123,0 2 37319156 rs62621388 A C 979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-1.686;SOR=0.588 GT:AD:DP:GQ:PL 0/1:39,43:82:99:1008,0,899 2 37365640 rs2307484 G A 879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=-0.243;SOR=1.086 GT:AD:DP:GQ:PL 0/1:62,42:104:99:908,0,1632 2 37373982 rs2307475 A AT 4264.73 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.79;QD=39.13;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,109:109:99:4302,328,0 2 37402356 rs45439591 C G 579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.989;SOR=0.646 GT:AD:DP:GQ:PL 0/1:32,27:59:99:608,0,766 2 37406644 rs10182091 A G 4180.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4209,435,0 2 37406680 rs10205833 C G 3855.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3884,378,0 2 37410554 rs11569752 G A 658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=-0.551;SOR=0.649 GT:AD:DP:GQ:PL 0/1:36,31:67:99:687,0,790 2 37414548 rs45493492 T C 551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.589;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.26;ReadPosRankSum=-0.446;SOR=0.704 GT:AD:DP:GQ:PL 0/1:49,27:76:99:580,0,1168 2 37414586 rs45626240 A T 346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.661;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.54;ReadPosRankSum=-0.501;SOR=0.813 GT:AD:DP:GQ:PL 0/1:37,16:53:99:375,0,961 2 37415603 rs45552433 C T 773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=0.826;SOR=0.685 GT:AD:DP:GQ:PL 0/1:50,34:84:99:802,0,1291 2 37447627 rs35462755 C CA 449.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.646;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=-1.83;SOR=1.061 GT:AD:DP:GQ:PL 0/1:25,23:50:99:487,0,515 2 37456032 rs2098386 C T 1489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.546;SOR=0.666 GT:AD:DP:GQ:PL 0/1:82,65:147:99:1518,0,2149 2 37494591 rs2302650 A G 1084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.193;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.847;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.948;SOR=0.6 GT:AD:DP:GQ:PL 0/1:36,50:86:99:1113,0,698 2 37543371 rs6544066 A G 3258.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.2 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3287,327,0 2 37579937 rs2230299 C T 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.494;SOR=0.49 GT:AD:DP:GQ:PL 0/1:72,65:137:99:1483,0,1719 2 38178406 rs4670799 A G 3600.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3629,353,0 2 38179134 rs4670800 G A 2901.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2930,299,0 2 38298150 rs1056837 A G 3352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.962;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=-2.108;SOR=0.785 GT:AD:DP:GQ:PL 0/1:107,133:240:99:3381,0,2525 2 38298203 rs1056836 C G 3019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=1.214;SOR=0.838 GT:AD:DP:GQ:PL 0/1:104,116:220:99:3048,0,2933 2 38302177 rs1056827 C A 2704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.355;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=0.566;SOR=0.809 GT:AD:DP:GQ:PL 0/1:121,108:229:99:2733,0,3301 2 38302390 rs10012 G C 3822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-1.079;SOR=0.479 GT:AD:DP:GQ:PL 0/1:148,162:310:99:3851,0,3487 2 38302544 rs2617266 G A 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=7.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=1.286;SOR=1.312 GT:AD:DP:GQ:PL 0/1:71,54:125:99:1223,0,1977 2 39025555 rs1530853 G A 4606.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4635,482,0 2 39030074 rs13029406 C T 4254.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=1.186 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4283,452,0 2 39050141 rs3770681 A C 5986.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=31.51;SOR=1.297 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6015,569,0 2 39082344 rs7598922 T C 5213.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5242,530,0 2 39187190 rs6755527 T C 10423.8 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.27;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,323:323:99:10452,970,0 2 39187519 rs958412 A G 8230.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,261:261:99:8259,782,0 2 39499614 rs17023530 T A 378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=2.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.43;ReadPosRankSum=0.227;SOR=0.341 GT:AD:DP:GQ:PL 0/1:33,18:51:99:407,0,854 2 39507417 rs3755176 T A 648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.131;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=4.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-0.981;SOR=0.672 GT:AD:DP:GQ:PL 0/1:41,31:72:99:677,0,959 2 39553271 rs3815594 A G 2930.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=1.166 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2959,269,0 2 39583446 rs8545 A G 1326.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1355,126,0 2 42510018 rs6736913 A G 2482.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.13;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2511,279,0 2 42515388 rs10202624 A G 1138.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1167,120,0 2 42515437 rs28651764 A G 1205.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1234,120,0 2 42556022 rs2286700 A T 868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.781;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.874;SOR=0.651 GT:AD:DP:GQ:PL 0/1:53,37:90:99:897,0,1212 2 42922888 rs66547039 AT A 437.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=1.158;QD=10.42;ReadPosRankSum=-2.1;SOR=0.846 GT:AD:DP:GQ:PL 0/1:16,26:42:99:475,0,296 2 42990336 rs1992286 T G 3541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.458;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=1.365;SOR=0.67 GT:AD:DP:GQ:PL 0/1:119,124:243:99:3570,0,3127 2 43625184 rs33979934 T A 2122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.133;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=1.919;SOR=0.78 GT:AD:DP:GQ:PL 0/1:76,94:170:99:2151,0,1547 2 43902511 rs755862 G C 1010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.654;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.311;SOR=0.544 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1039,0,1050 2 43903066 rs3828297 A G 2085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.65;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-1.172;SOR=0.725 GT:AD:DP:GQ:PL 0/1:86,83:169:99:2114,0,2162 2 43903354 rs4952675 T C 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.144;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.122;SOR=0.699 GT:AD:DP:GQ:PL 0/1:79,63:142:99:1599,0,1883 2 43926943 rs7606783 T A 7355.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7384,720,0 2 43931176 rs4953002 T C 1914.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=30.39;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1943,188,0 2 43937723 . CTTTTT C 456.79 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.783;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=32.63;ReadPosRankSum=1.94;SOR=1.402 GT:AD:DP:GQ:PL 0/1:4,10:24:99:494,0,278 2 43939525 rs13028613 A G 2469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=1.224;SOR=0.488 GT:AD:DP:GQ:PL 0/1:86,101:187:99:2498,0,2169 2 43991357 rs7565517 A C 2031.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.296 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2060,207,0 2 44004010 rs2288709 T C 403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.645;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.21;ReadPosRankSum=-0.99;SOR=1.059 GT:AD:DP:GQ:PL 0/1:38,18:56:99:432,0,879 2 44066174 rs3806471 T G 757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.216;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.71;ReadPosRankSum=-0.585;SOR=1.051 GT:AD:DP:GQ:PL 0/1:77,36:113:99:786,0,1828 2 44071639 rs4148210 C T 2515.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2544,266,0 2 44071743 rs4148211 A G 3105.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3134,306,0 2 44101538 rs28517482 C T 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.898;SOR=0.421 GT:AD:DP:GQ:PL 0/1:41,45:86:99:994,0,934 2 44104925 rs6544718 T C 3312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.417;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=1.347;SOR=0.665 GT:AD:DP:GQ:PL 0/1:154,130:284:99:3341,0,3892 2 44123758 rs76850904 G A 286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.97;ReadPosRankSum=0.515;SOR=0.804 GT:AD:DP:GQ:PL 0/1:32,16:48:99:315,0,792 2 44177701 rs58811869 G C 527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=2.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.199;SOR=1.292 GT:AD:DP:GQ:PGT:PID:PL 0/1:22,19:41:99:0|1:44177698_T_C:556,0,634 2 44209477 rs6741066 C T 2997.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3026,315,0 2 44502788 rs3738985 A C 5780.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5809,543,0 2 44531484 rs3738984 C T 2011.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2040,210,0 2 44547574 rs698761 G A 1662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=7.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.078;SOR=0.325 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1691,0,2091 2 44569700 rs61004197 AAAT A 2702.73 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=43.59;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2740,187,0 2 44931493 rs149508645 G A 614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.566;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.76;SOR=0.495 GT:AD:DP:GQ:PL 0/1:23,31:54:99:643,0,589 2 45171842 rs338074 A G 5778.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5807,573,0 2 45647043 rs3213788 C G 2207.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2236,230,0 2 46313481 rs1143691 C T 1829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=5.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.367;SOR=1.081 GT:AD:DP:GQ:PL 0/1:95,80:175:99:1858,0,2364 2 46583278 rs61586942 C CG 2308.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.041;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=29.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=33.95;ReadPosRankSum=2.77;SOR=1.85 GT:AD:DP:GQ:PGT:PID:PL 0/1:14,54:68:99:0|1:46583278_C_CG:2346,0,545 2 46583279 rs142684263 C CT 2302.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.392;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=32.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=32.9;ReadPosRankSum=2.637;SOR=1.946 GT:AD:DP:GQ:PGT:PID:PL 0/1:14,56:70:99:0|1:46583278_C_CG:2340,0,597 2 46583281 rs75984373 C T 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=31.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.42;ReadPosRankSum=3.465;SOR=1.715 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,58:76:99:0|1:46583278_C_CG:2340,0,597 2 46603671 rs7557402 C G 1974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=1.291;SOR=1.095 GT:AD:DP:GQ:PL 0/1:58,79:137:99:2003,0,1224 2 46707808 rs70940616 C CAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGGG 3428.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.91;ReadPosRankSum=0.678;SOR=0.674 GT:AD:DP:GQ:PL 0/1:109,55:164:99:3466,0,4129 2 46739157 rs3814045 A G 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.14;ReadPosRankSum=-0.374;SOR=0.893 GT:AD:DP:GQ:PL 0/1:51,68:119:99:1711,0,1172 2 46839477 rs1824050 T C 415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=3.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.248;SOR=0.233 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,19:35:99:0|1:46839477_T_C:444,0,387 2 46986416 rs6738426 A G 1952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.63;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-1.344;QD=13.47;ReadPosRankSum=0.711;SOR=0.807 GT:AD:DP:GQ:PL 0/1:64,81:145:99:1981,0,1668 2 46987300 rs3768720 T G 2235.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2264,210,0 2 47220622 rs17480869 G A 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.962;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=-0.372;SOR=0.716 GT:AD:DP:GQ:PL 0/1:67,53:120:99:1115,0,1706 2 47233048 rs13407983 G A 1429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=3.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.266;SOR=1.013 GT:AD:DP:GQ:PL 0/1:68,62:130:99:1458,0,1685 2 47249239 rs3814036 A G 2903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=-0.684;SOR=0.65 GT:AD:DP:GQ:PL 0/1:93,115:208:99:2932,0,2124 2 47251510 rs11885389 G C 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.994;SOR=0.594 GT:AD:DP:GQ:PL 0/1:73,80:153:99:1902,0,1708 2 47279039 rs13001154 T C 1731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.215;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=0.604;SOR=0.76 GT:AD:DP:GQ:PL 0/1:113,76:189:99:1760,0,2833 2 47601106 rs1126497 T C 2054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.616;SOR=0.543 GT:AD:DP:GQ:PL 0/1:81,95:176:99:2083,0,1936 2 47630550 rs2303426 C G 1661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.779;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.588;SOR=0.506 GT:AD:DP:GQ:PL 0/1:72,62:134:99:1690,0,1864 2 47635523 rs201372136 CT C 50.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.01;ReadPosRankSum=-0.765;SOR=1.179 GT:AD:DP:GQ:PL 0/1:40,10:50:88:88,0,888 2 47656871 rs17224360 T C 621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.878;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=8.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.501;SOR=1.863 GT:AD:DP:GQ:PL 0/1:32,24:56:99:650,0,835 2 47693959 rs3732183 G A 925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.24;ReadPosRankSum=-1.024;SOR=0.683 GT:AD:DP:GQ:PL 0/1:28,37:65:99:954,0,766 2 47703500 rs2303428 T C 1353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.51;ReadPosRankSum=-0.37;SOR=0.525 GT:AD:DP:GQ:PL 0/1:28,54:82:99:1382,0,628 2 47739551 rs2303424 A G 2286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.58;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=3.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=0.331;SOR=0.449 GT:AD:DP:GQ:PL 0/1:62,98:160:99:2315,0,1563 2 47748292 rs2278139 A G 3083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.121;SOR=0.707 GT:AD:DP:GQ:PL 0/1:147,130:277:99:3112,0,3257 2 48010488 rs1042821 G A 7855.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7884,739,0 2 48032740 rs267608104 A AT 1134.92 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.92;ReadPosRankSum=0.879;SOR=0.26 GT:AD:DP:GQ:PL 0/1:9,51:83:89:1166,0,89 2 48046012 rs374445177 TA T 135.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.242;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0;QD=1.81;ReadPosRankSum=0.747;SOR=0.926 GT:AD:DP:GQ:PL 0/1:57,18:83:99:173,0,1251 2 48808594 rs3749142 C T 4553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.372;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=1.535;SOR=0.611 GT:AD:DP:GQ:PL 0/1:154,177:331:99:4582,0,3643 2 48809593 rs3792234 G T 4807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.925;SOR=0.725 GT:AD:DP:GQ:PL 0/1:213,200:413:99:4836,0,5461 2 48822381 rs2140551 G A 2963.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2992,306,0 2 48873582 rs12988176 C T 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.44;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.362;SOR=0.678 GT:AD:DP:GQ:PL 0/1:53,41:94:99:1018,0,1385 2 48898798 rs3920390 T A 3311.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.07;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3340,353,0 2 48906598 rs139534452 A G 2149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.014;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.331;SOR=0.702 GT:AD:DP:GQ:PL 0/1:75,89:164:99:2178,0,1739 2 48915871 rs11125179 A G 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.696;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.907;SOR=0.485 GT:AD:DP:GQ:PL 0/1:68,74:142:99:1863,0,1674 2 48921375 rs2293275 T C 375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.12;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.37;ReadPosRankSum=-2.597;SOR=1.041 GT:AD:DP:GQ:PL 0/1:39,20:59:99:404,0,844 2 48925746 rs6755901 C T 3265.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.386 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3294,330,0 2 50574038 rs13413205 C A 5274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=466;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=1.046;QD=11.44;ReadPosRankSum=0.164;SOR=0.733 GT:AD:DP:GQ:PL 0/1:240,221:461:99:5303,0,5784 2 54041983 rs2542571 G T 313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=-0.766;SOR=0.773 GT:AD:DP:GQ:PL 0/1:23,17:40:99:342,0,552 2 54115904 rs805400 A G 1283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.007;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.719;SOR=0.771 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1312,0,1283 2 54120025 rs805408 A T 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-0.441;SOR=0.563 GT:AD:DP:GQ:PL 0/1:79,59:138:99:1289,0,1904 2 54120820 rs805412 G A 815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.133;QD=9.38;ReadPosRankSum=1.659;SOR=0.85 GT:AD:DP:GQ:PL 0/1:48,39:87:99:844,0,1175 2 54125495 rs805417 T C 1106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.59;ReadPosRankSum=-1.18;SOR=0.706 GT:AD:DP:GQ:PL 0/1:30,41:71:99:1135,0,709 2 54127041 rs805423 C T 873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.2;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=-1.822;SOR=0.759 GT:AD:DP:GQ:PL 0/1:61,43:104:99:902,0,1610 2 54133744 rs805316 T C 723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.248;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-1.546;SOR=1.041 GT:AD:DP:GQ:PL 0/1:45,31:76:99:752,0,1107 2 54155240 rs805349 A G 1201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.227;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=4.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.008;SOR=1.173 GT:AD:DP:GQ:PL 0/1:59,48:107:99:1230,0,1514 2 54158957 rs805352 C T 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.689;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=4.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-1.85;SOR=1.058 GT:AD:DP:GQ:PL 0/1:66,69:135:99:1773,0,1506 2 54562012 rs55714450 C A 769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.99;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.94;ReadPosRankSum=-0.584;SOR=0.459 GT:AD:DP:GQ:PL 0/1:60,37:97:99:798,0,1639 2 54587561 rs200428258 C T 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.956;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=1.254;SOR=0.615 GT:AD:DP:GQ:PL 0/1:105,102:207:99:2505,0,2458 2 54587596 rs2280718 C T 5774.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5803,579,0 2 54858664 rs2229503 C T 3035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-2.842;SOR=0.904 GT:AD:DP:GQ:PL 0/1:130,126:256:99:3064,0,3458 2 54877146 rs3739109 A G 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.583;SOR=0.933 GT:AD:DP:GQ:PL 0/1:106,113:219:99:2670,0,2569 2 55040426 rs2631840 A G 2205.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2234,216,0 2 55155551 rs733916 C T 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-1.109;SOR=1.031 GT:AD:DP:GQ:PL 0/1:78,80:158:99:1859,0,1821 2 55176112 rs13394146 C T 750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.086;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.547;SOR=0.606 GT:AD:DP:GQ:PL 0/1:37,35:72:99:779,0,832 2 55186229 rs12623902 T C 1620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=6.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=-0.56;SOR=0.335 GT:AD:DP:GQ:PL 0/1:50,67:117:99:1649,0,1191 2 55186394 rs17346629 A C 1672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.692;SOR=0.807 GT:AD:DP:GQ:PL 0/1:58,73:131:99:1701,0,1414 2 55214618 rs2580769 A C 551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.373;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=1.779;SOR=0.539 GT:AD:DP:GQ:PL 0/1:41,20:61:99:580,0,1170 2 55277226 rs117465650 C T 3064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=8.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-0.131;SOR=0.857 GT:AD:DP:GQ:PL 0/1:137,129:266:99:3093,0,3712 2 55404794 rs14026 G A 3164.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3193,330,0 2 55407754 rs6716066 C T 3243.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3272,326,0 2 55449464 rs17852670 T C 1407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.411;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-1.821;SOR=0.7 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1436,0,1614 2 55470115 rs11357 C T 1302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.15;SOR=0.97 GT:AD:DP:GQ:PL 0/1:42,55:97:99:1331,0,1003 2 55471382 rs61109509 T C 739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.632;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=2.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=-1.138;SOR=1.329 GT:AD:DP:GQ:PL 0/1:23,26:49:99:768,0,519 2 55476591 rs2576709 G A 1325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=0.588;SOR=0.861 GT:AD:DP:GQ:PL 0/1:87,61:148:99:1354,0,2085 2 55490819 rs1056445 G T 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=5.702;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1;QD=11.96;ReadPosRankSum=-0.305;SOR=1.245 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1463,0,1519 2 55576634 rs2589090 C T 1618.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.44;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1647,176,0 2 55589434 rs3111412 T A 1577.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1606,159,0 2 55599655 rs3111411 G A 349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.714;SOR=0.784 GT:AD:DP:GQ:PL 0/1:15,16:31:99:378,0,395 2 55771161 rs1045910 A G 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.928;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-1.152;SOR=0.782 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1671,0,1856 2 55863360 rs35916020 T TA 503.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.06;MLEAC=1;MLEAF=0.5;MQ=60.66;MQRankSum=1.67;QD=9.5;ReadPosRankSum=1.058;SOR=0.479 GT:AD:DP:GQ:PL 0/1:29,24:62:99:541,0,549 2 55883317 rs2627765 G T 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.577;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=2.105;SOR=0.687 GT:AD:DP:GQ:PL 0/1:48,37:85:99:944,0,1132 2 55894243 rs76693423 G A 1463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.18;ReadPosRankSum=0.301;SOR=0.406 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,38:66:99:0|1:55894243_G_A:1492,0,1325 2 55894247 rs782637 T C 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.04;ReadPosRankSum=-0.943;SOR=0.576 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,38:63:99:0|1:55894243_G_A:1480,0,1254 2 55912120 rs782572 T C 523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=-0.209;SOR=0.731 GT:AD:DP:GQ:PL 0/1:39,26:65:99:552,0,1007 2 56149475 rs2277886 C G 2473.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2502,253,0 2 56411817 rs35587531 C T 8180.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8209,801,0 2 58316814 rs1051061 A G 1922.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1951,186,0 2 58433375 rs12475594 A G 354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.394;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=6.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=0.627;SOR=1.718 GT:AD:DP:GQ:PL 0/1:11,14:25:99:383,0,228 2 60687959 rs7569946 A G 3336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.217;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=1.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=1.7;SOR=0.782 GT:AD:DP:GQ:PL 0/1:188,127:315:99:3365,0,4790 2 61175312 rs12479056 T C 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.993;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-2.122;SOR=0.648 GT:AD:DP:GQ:PL 0/1:71,76:147:99:1931,0,1599 2 61304271 rs1729659 A G 1125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.525;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.64;ReadPosRankSum=-0.255;SOR=1.054 GT:AD:DP:GQ:PL 0/1:27,45:72:99:1154,0,714 2 61308569 . AT A 126.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.363;QD=2.48;ReadPosRankSum=-0.826;SOR=0.698 GT:AD:DP:GQ:PL 0/1:37,14:58:99:164,0,809 2 61389609 rs17006627 G C 346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.645;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.54;ReadPosRankSum=-0.383;SOR=1.238 GT:AD:DP:GQ:PL 0/1:29,17:46:99:375,0,693 2 61389737 rs1729674 T G 516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.089;SOR=0.941 GT:AD:DP:GQ:PL 0/1:26,25:51:99:545,0,603 2 61415492 rs14170 A G 7191.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=30.35;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7220,710,0 2 61468761 rs72884996 T C 2229.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2258,223,0 2 61522123 rs13014347 T C 3293.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3322,332,0 2 61566536 rs17008405 T C 3521.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3550,345,0 2 61575308 rs6722430 A G 7478.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7507,752,0 2 62066927 rs4672457 A G 5114.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5143,487,0 2 62081012 rs4270331 A C 5826.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.3;SOR=1.307 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5855,525,0 2 62100380 rs76248080 G T 299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=1.219;SOR=1.302 GT:AD:DP:GQ:PL 0/1:18,13:31:99:328,0,495 2 62104660 rs71981241 TA T 496.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=2.282;SOR=0.368 GT:AD:DP:GQ:PL 0/1:16,28:55:99:534,0,325 2 62112221 rs11429418 G GA 1238.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.7;ReadPosRankSum=0.711;SOR=1.099 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,34:70:99:0|1:62112221_G_GA:1276,0,1380 2 62112222 rs67059162 G A 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.731;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.08;ReadPosRankSum=0.86;SOR=1.038 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,33:69:99:0|1:62112221_G_GA:1276,0,1380 2 62729674 rs4672527 T C 2205.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=32.92;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2234,201,0 2 62733253 rs11676567 C T 1300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.252;SOR=0.807 GT:AD:DP:GQ:PL 0/1:70,59:129:99:1329,0,1803 2 63176139 rs17432615 A C 1236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.169;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=5.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-0.892;SOR=0.73 GT:AD:DP:GQ:PL 0/1:55,40:95:99:1265,0,1450 2 64069311 rs4671534 G C 1775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.144;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.913;QD=10.63;ReadPosRankSum=1.18;SOR=0.572 GT:AD:DP:GQ:PL 0/1:90,77:167:99:1804,0,2035 2 65217089 rs7559202 G C 6217.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6246,582,0 2 65481008 rs268871 A C 2534.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2563,249,0 2 65488538 rs268862 G A 2056.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.41 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2085,201,0 2 65495887 rs268875 G A 3534.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.86;QD=28.97;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3563,365,0 2 67630980 rs3770657 G A 4383.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4412,429,0 2 67631831 rs61740794 G A 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.587;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-0.703;SOR=0.8 GT:AD:DP:GQ:PL 0/1:99,113:212:99:2902,0,2372 2 67632125 rs3770655 C T 3472.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3501,324,0 2 68364478 rs13009282 T C 2043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.358;SOR=0.767 GT:AD:DP:GQ:PL 0/1:98,95:193:99:2072,0,2279 2 68385097 rs2044693 A G 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.51;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=2.144;SOR=0.997 GT:AD:DP:GQ:PL 0/1:76,70:146:99:1577,0,1783 2 68385190 rs61735656 G C 2334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.036;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.507;SOR=0.743 GT:AD:DP:GQ:PL 0/1:103,97:200:99:2363,0,2451 2 68511584 rs735815 A G 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.326;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.473;SOR=0.629 GT:AD:DP:GQ:PL 0/1:31,46:77:99:1000,0,623 2 68546374 rs4671898 T C 2608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.106;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.371;SOR=0.621 GT:AD:DP:GQ:PL 0/1:120,103:223:99:2637,0,2751 2 68546449 rs13025842 G A 1983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.466;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-0.699;SOR=0.719 GT:AD:DP:GQ:PL 0/1:121,79:200:99:2012,0,3058 2 68607947 rs3816281 G T 1297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-1.533;SOR=0.831 GT:AD:DP:GQ:PL 0/1:62,60:122:99:1326,0,1551 2 68613710 rs2070171 G A 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.11;ReadPosRankSum=-0.115;SOR=0.669 GT:AD:DP:GQ:PL 0/1:79,48:127:99:1058,0,1959 2 68622914 rs1063479 G A 3842.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3871,399,0 2 68622952 rs1050181 G C 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-1.164;SOR=1.059 GT:AD:DP:GQ:PL 0/1:52,55:107:99:1333,0,1413 2 69040500 rs2280310 G A 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.799;SOR=0.751 GT:AD:DP:GQ:PL 0/1:106,105:211:99:2303,0,2519 2 69049939 rs4241344 G T 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.351;SOR=0.661 GT:AD:DP:GQ:PL 0/1:99,83:182:99:1893,0,3896 2 69049941 rs10177248 T C 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.014;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.137;SOR=0.734 GT:AD:DP:GQ:PL 0/1:84,98:182:99:2347,0,3213 2 69409029 rs6749826 C A 2589.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2618,264,0 2 69553375 rs201330278 GA G 207.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.867;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.7;ReadPosRankSum=1.841;SOR=0.799 GT:AD:DP:GQ:PL 0/1:18,13:37:99:245,0,368 2 69573029 rs6722492 T C 218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=0.217;SOR=0.473 GT:AD:DP:GQ:PL 0/1:13,11:24:99:247,0,290 2 69659126 rs4453725 A T 670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.761;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.379;SOR=0.914 GT:AD:DP:GQ:PL 0/1:29,27:56:99:699,0,742 2 69741609 rs2276689 C T 2391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=1.019;SOR=0.627 GT:AD:DP:GQ:PL 0/1:139,102:241:99:2420,0,3668 2 69741753 rs3832159 CTGT C 2506.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.863;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=4.891;QD=10.67;ReadPosRankSum=-0.783;SOR=0.526 GT:AD:DP:GQ:PL 0/1:137,98:235:99:2544,0,5535 2 69741854 rs6715776 T G 5424.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=29.97;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5453,541,0 2 70315448 rs12319 A T 2581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.226;SOR=0.675 GT:AD:DP:GQ:PL 0/1:96,109:205:99:2610,0,2409 2 70377653 rs12989348 G A 1309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=1.774;SOR=0.606 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1338,0,1485 2 70524416 rs77938271 T G 84.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.337;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=18.849;MLEAC=1;MLEAF=0.5;MQ=58.93;MQRankSum=-10.456;QD=0.68;ReadPosRankSum=-0.533;SOR=4.116 GT:AD:DP:GQ:PL 0/1:114,10:124:99:113,0,3043 2 70524427 rs78213014 T C 63.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.148;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=15.594;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=-10.679;QD=0.5;ReadPosRankSum=-0.663;SOR=2.956 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,11:128:92:0|1:70524427_T_C:92,0,5095 2 70524433 rs79236443 T G 57.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.911;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=13.665;MLEAC=1;MLEAF=0.5;MQ=59.08;MQRankSum=-10.838;QD=0.43;ReadPosRankSum=0.166;SOR=2.921 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,10:133:86:0|1:70524427_T_C:86,0,5216 2 70524437 rs77747732 A G 42.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.564;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=16.271;MLEAC=1;MLEAF=0.5;MQ=59;MQRankSum=-11.057;QD=0.31;ReadPosRankSum=-0.285;SOR=3.141 GT:AD:DP:GQ:PGT:PID:PL 0/1:126,11:137:71:0|1:70524427_T_C:71,0,5426 2 70524451 . C T 230.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=12.282;MLEAC=1;MLEAF=0.5;MQ=58.88;MQRankSum=-11.349;QD=1.53;ReadPosRankSum=-1.536;SOR=2.29 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,16:151:99:0|1:70524427_T_C:259,0,5704 2 70524452 rs80277652 A G 236.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.814;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=12.384;MLEAC=1;MLEAF=0.5;MQ=58.88;MQRankSum=-11.181;QD=1.6;ReadPosRankSum=-1.239;SOR=2.207 GT:AD:DP:GQ:PGT:PID:PL 0/1:133,15:148:99:0|1:70524427_T_C:265,0,5620 2 70524477 . G C 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.884;ClippingRankSum=0;DP=164;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.5;MQ=58.64;MQRankSum=-9.586;QD=4.04;ReadPosRankSum=-1.497;SOR=1.272 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,26:162:99:0|1:70524477_G_C:682,0,5600 2 70524478 rs75143374 G A 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.5;MQ=58.64;MQRankSum=-9.586;QD=4.04;ReadPosRankSum=-1.37;SOR=1.272 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,26:162:99:0|1:70524477_G_C:682,0,5600 2 70524508 . A ACAGC 1385.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.447;ClippingRankSum=0;DP=193;ExcessHet=3.0103;FS=4.14;MLEAC=1;MLEAF=0.5;MQ=57.47;MQRankSum=-10.853;QD=7.61;ReadPosRankSum=-0.092;SOR=0.985 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,42:182:99:0|1:70524508_A_ACAGC:1423,0,5768 2 70524511 . ACTGT A 1376.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DP=192;ExcessHet=3.0103;FS=4.03;MLEAC=1;MLEAF=0.5;MQ=57.6;MQRankSum=-10.725;QD=7.32;ReadPosRankSum=0.898;SOR=0.97 GT:AD:DP:GQ:PGT:PID:PL 0/1:144,44:188:99:0|1:70524508_A_ACAGC:1414,0,5894 2 70524576 rs75086964 C G 970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.5;MQ=57.38;MQRankSum=-10.712;QD=4.39;ReadPosRankSum=1.262;SOR=0.814 GT:AD:DP:GQ:PL 0/1:160,61:221:99:999,0,4983 2 70524577 rs2618235 G A 1339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.109;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.5;MQ=57.38;MQRankSum=4.459;QD=6.06;ReadPosRankSum=-1.868;SOR=0.862 GT:AD:DP:GQ:PL 0/1:152,69:221:99:1368,0,4650 2 70528827 rs2279159 G A 5156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.241;ClippingRankSum=0;DB;DP=376;ExcessHet=3.0103;FS=0.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=-1.305;SOR=0.734 GT:AD:DP:GQ:PL 0/1:181,194:375:99:5185,0,4702 2 71004492 rs56316086 T C 933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.06;ReadPosRankSum=-0.671;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,26:62:99:0|1:71004492_T_C:962,0,1449 2 71004494 rs56135050 A T 933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.7;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.06;ReadPosRankSum=-0.789;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,26:62:99:0|1:71004492_T_C:962,0,1449 2 71012604 rs7566541 G A 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=2.352;SOR=0.683 GT:AD:DP:GQ:PL 0/1:59,63:122:99:1464,0,1404 2 71012734 rs7566476 C G 1505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.58;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.21;ReadPosRankSum=1.496;SOR=0.754 GT:AD:DP:GQ:PL 0/1:46,53:99:99:1534,0,1204 2 71043461 rs722896 C T 4072.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4101,390,0 2 71044211 rs2075221 C T 4633.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4662,474,0 2 71058835 rs741326 A G 2715.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.71;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2744,293,0 2 71062833 rs11450450 G GC 4523.73 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=37.08;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4561,370,0 2 71163086 rs11681642 T C 5386.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=1.487 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5415,507,0 2 71190384 rs2072462 C T 3052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.846;SOR=0.695 GT:AD:DP:GQ:PL 0/1:140,130:270:99:3081,0,3375 2 71211989 rs3796099 A G 5627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.296;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.174;SOR=0.816 GT:AD:DP:GQ:PL 0/1:205,209:414:99:5656,0,4985 2 71297695 rs2287328 T C 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.406;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.713;SOR=0.626 GT:AD:DP:GQ:PL 0/1:57,61:118:99:1483,0,1335 2 71297982 rs2287327 C T 3856.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.323 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3885,393,0 2 71305456 rs6713 C T 4950.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.702 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4979,471,0 2 71417065 rs357777 G T 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-0.626;SOR=0.617 GT:AD:DP:GQ:PL 0/1:88,72:160:99:1557,0,2113 2 71633275 rs3732233 T C 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.975;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.494;SOR=0.519 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1515,0,1374 2 71633389 rs6714975 C T 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=1.353;SOR=0.429 GT:AD:DP:GQ:PL 0/1:48,44:92:99:1041,0,1252 2 71654175 rs1804020 G A 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.713;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.775;SOR=0.682 GT:AD:DP:GQ:PL 0/1:98,99:197:99:2499,0,2229 2 71661855 rs35526551 C CA 911.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.115;QD=11.26;ReadPosRankSum=-0.688;SOR=0.547 GT:AD:DP:GQ:PL 0/1:44,37:81:99:949,0,1165 2 71709120 rs12470028 G A 1598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=-0.506;SOR=0.477 GT:AD:DP:GQ:PL 0/1:42,69:111:99:1627,0,981 2 71738987 rs34603128 C T 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=1.673;SOR=0.665 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1407,0,1559 2 71742736 rs61104194 C T 1940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.15;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.619;SOR=0.873 GT:AD:DP:GQ:PL 0/1:96,77:173:99:1969,0,2575 2 71747899 rs12713756 G A 1367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.501;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.71;ReadPosRankSum=-0.712;SOR=0.353 GT:AD:DP:GQ:PL 0/1:38,55:93:99:1396,0,1093 2 71753487 rs35982795 C T 2555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.079;SOR=0.756 GT:AD:DP:GQ:PL 0/1:107,101:208:99:2584,0,2967 2 71762232 rs4852801 C T 1423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-0.285;SOR=0.694 GT:AD:DP:GQ:PL 0/1:91,65:156:99:1452,0,2220 2 71780215 rs2303596 T C 6102.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6131,647,0 2 71795152 rs2288355 A T 7108.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7137,699,0 2 71838597 rs2303606 C A 6459.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6488,612,0 2 71906171 rs1863812 T C 2681.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.11;SOR=2.055 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2710,243,0 2 71906278 rs17718530 A C 2395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.91;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-1.073;SOR=0.711 GT:AD:DP:GQ:PL 0/1:108,109:217:99:2424,0,2484 2 71909822 rs2559082 C T 1981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.235;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.534;SOR=0.702 GT:AD:DP:GQ:PL 0/1:81,79:160:99:2010,0,1980 2 72692272 rs5832083 A AAG 3156.73 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.46;SOR=1.276 GT:AD:DP:GQ:PL 1/1:0,71:71:99:3194,214,0 2 73339708 rs1864488 G A 3949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.451;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.9;ReadPosRankSum=-1.134;SOR=0.65 GT:AD:DP:GQ:PL 0/1:113,152:265:99:3978,0,3008 2 73429808 rs1864492 G C 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.227;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.586;SOR=0.804 GT:AD:DP:GQ:PL 0/1:88,84:172:99:2078,0,1993 2 73447775 rs2303904 A G 1606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.228;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.976;SOR=0.942 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1635,0,1737 2 73460293 rs70965722 AGGGCC A 1735.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.336;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=61.03;MQRankSum=3.672;QD=16.85;ReadPosRankSum=-1.542;SOR=0.816 GT:AD:DP:GQ:PL 0/1:54,49:103:99:1773,0,2874 2 73467676 rs3835072 GAA G 1548.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.81;ReadPosRankSum=-0.611;SOR=0.622 GT:AD:DP:GQ:PL 0/1:31,40:71:99:1586,0,1124 2 73471193 rs11289471 GT G 152.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.395;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.363;QD=1.89;ReadPosRankSum=-0.404;SOR=0.963 GT:AD:DP:GQ:PL 0/1:63,18:98:99:190,0,1335 2 73471653 rs1018342 T G 1315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.136;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=0.435;SOR=0.93 GT:AD:DP:GQ:PL 0/1:42,51:93:99:1344,0,1043 2 73478461 rs7851 A T 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.33;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-0.818;SOR=0.702 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1264,0,1936 2 73490412 rs34363861 A G 1592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.601;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.009;SOR=0.551 GT:AD:DP:GQ:PL 0/1:54,66:120:99:1621,0,1219 2 73492614 rs526106 A T 4698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=1.405;SOR=0.783 GT:AD:DP:GQ:PL 0/1:183,196:379:99:4727,0,4408 2 73613031 . T TGGAGGA 307.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.39;ReadPosRankSum=-0.988;SOR=0.527 GT:AD:DP:GQ:PL 0/1:11,9:20:99:345,0,714 2 73650122 rs1881246 T A 922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.438;SOR=0.504 GT:AD:DP:GQ:PL 0/1:47,43:90:99:951,0,1152 2 73675227 rs34628045 T TCTC 3702.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.635;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.91;ReadPosRankSum=0.94;SOR=0.617 GT:AD:DP:GQ:PL 0/1:93,93:186:99:3740,0,4295 2 73675669 rs2037814 T G 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.896;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.559;SOR=0.568 GT:AD:DP:GQ:PL 0/1:101,96:197:99:2501,0,2504 2 73675844 rs7598901 C T 3040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.34;ReadPosRankSum=0.717;SOR=0.609 GT:AD:DP:GQ:PL 0/1:91,121:212:99:3069,0,2306 2 73716810 rs3820700 G A 1493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-1.375;SOR=0.589 GT:AD:DP:GQ:PL 0/1:70,63:133:99:1522,0,1838 2 73717103 rs2017116 G C 2993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=0.21;SOR=0.709 GT:AD:DP:GQ:PL 0/1:100,121:221:99:3022,0,2483 2 73828310 rs1320374 T C 1406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.076;SOR=0.597 GT:AD:DP:GQ:PL 0/1:76,62:138:99:1435,0,1935 2 73828538 rs1052161 G A 3132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.413;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-1.335;SOR=0.757 GT:AD:DP:GQ:PL 0/1:137,135:272:99:3161,0,3163 2 73927931 rs4852974 A G 3978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.312;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.991;QD=12.32;ReadPosRankSum=-0.804;SOR=0.729 GT:AD:DP:GQ:PL 0/1:162,161:325:99:4007,0,4099 2 73928098 rs2001490 C G 5052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=1.28;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.882;QD=14.56;ReadPosRankSum=0.321;SOR=0.622 GT:AD:DP:GQ:PL 0/1:153,194:347:99:5081,0,4036 2 73928366 rs2012574 G C 4505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.941;SOR=0.734 GT:AD:DP:GQ:PL 0/1:187,189:376:99:4534,0,4477 2 73957124 rs7210 A G 455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.412;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=4.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.378;SOR=1.427 GT:AD:DP:GQ:PL 0/1:30,16:46:99:484,0,806 2 74007136 rs2272051 T C 3551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.617;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=1.659;SOR=0.77 GT:AD:DP:GQ:PL 0/1:157,144:301:99:3580,0,3662 2 74128433 rs1050146 C T 2356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.057;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=1.077;SOR=0.851 GT:AD:DP:GQ:PL 0/1:130,104:234:99:2385,0,3118 2 74135797 rs702461 T C 1349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=3.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=-0.699;SOR=0.402 GT:AD:DP:GQ:PL 0/1:42,57:99:99:1378,0,1058 2 74135898 rs756128 A G 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.943;SOR=0.662 GT:AD:DP:GQ:PL 0/1:61,67:128:99:1606,0,1356 2 74140789 rs891698 T C 1484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.907;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-0.356;SOR=0.95 GT:AD:DP:GQ:PL 0/1:57,57:114:99:1513,0,1390 2 74185876 rs4777 A T 717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=-0.746;SOR=0.548 GT:AD:DP:GQ:PL 0/1:44,36:80:99:746,0,1031 2 74274329 rs61741171 C T 3619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=2.62;SOR=0.706 GT:AD:DP:GQ:PL 0/1:168,154:322:99:3648,0,4338 2 74300717 rs7560668 T C 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.062;SOR=0.748 GT:AD:DP:GQ:PL 0/1:69,78:147:99:1837,0,1536 2 74466594 rs4853018 G A 1724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.266;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=0.355;SOR=0.707 GT:AD:DP:GQ:PL 0/1:106,82:188:99:1753,0,2412 2 74482892 rs7602215 T C 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.535;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=4.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-1.225;SOR=1.058 GT:AD:DP:GQ:PL 0/1:97,76:173:99:1972,0,2470 2 74489318 rs55651232 G A 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.513;SOR=0.623 GT:AD:DP:GQ:PL 0/1:122,105:227:99:2221,0,2862 2 74687781 rs61733470 G A 1956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.5;MQ=59.14;MQRankSum=-1.004;QD=12.71;ReadPosRankSum=-0.562;SOR=0.889 GT:AD:DP:GQ:PL 0/1:74,80:154:99:1985,0,2006 2 74725144 rs6546908 T C 8080.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8109,816,0 2 75105798 rs604112 A G 2925.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.02;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2954,258,0 2 75113657 rs2229626 C T 2865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.605;SOR=0.892 GT:AD:DP:GQ:PL 0/1:98,119:217:99:2894,0,2260 2 75113789 rs2229627 C G 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.863;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.22;SOR=0.839 GT:AD:DP:GQ:PL 0/1:76,66:142:99:1652,0,1827 2 75115108 rs10194657 A G 4156.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4185,416,0 2 75185856 rs12366 G T 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.909;SOR=0.664 GT:AD:DP:GQ:PL 0/1:102,96:198:99:2159,0,2355 2 75425728 rs6715729 A G 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=8.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=1.039;SOR=0.625 GT:AD:DP:GQ:PL 0/1:112,105:217:99:2344,0,2572 2 75720372 rs11126472 C T 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.644;SOR=0.617 GT:AD:DP:GQ:PL 0/1:113,101:214:99:2218,0,2757 2 75720568 rs148155576 CGCTGTCGCT C 4427.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.022;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=3.08;QD=18.45;ReadPosRankSum=-0.549;SOR=0.765 GT:AD:DP:GQ:PL 0/1:121,119:240:99:4465,0,4637 2 75720664 rs6741778 G A 2791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=2.107;QD=12.24;ReadPosRankSum=-0.445;SOR=0.72 GT:AD:DP:GQ:PL 0/1:106,122:228:99:2820,0,2652 2 75879359 rs41382847 G A 597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.14;SOR=0.621 GT:AD:DP:GQ:PL 0/1:35,29:64:99:626,0,902 2 75882399 rs17689863 G A 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.72;SOR=1.219 GT:AD:DP:GQ:PL 0/1:61,50:111:99:1201,0,1600 2 75915035 rs1803196 C T 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.091;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-1.237;SOR=0.631 GT:AD:DP:GQ:PL 0/1:29,34:63:99:824,0,667 2 75923413 rs7560262 T C 897.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,29:29:87:926,87,0 2 75928300 rs6547019 G T 501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=-1.522;SOR=0.454 GT:AD:DP:GQ:PL 0/1:12,24:36:99:530,0,248 2 79254261 rs452267 T C 5637.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.92;QD=32.03;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5666,528,0 2 79255325 rs2290079 G C 1767.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.262 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,55:55:99:1|1:79255324_T_C:1796,165,0 2 79312414 rs3739144 G A 546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.542;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-1.87;SOR=1.035 GT:AD:DP:GQ:PL 0/1:33,24:57:99:575,0,757 2 79349974 rs200685695 G A 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.116;SOR=0.803 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1327,0,1260 2 79350347 rs12228 A G 1805.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.22;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1834,191,0 2 80101372 rs76801084 C T 2861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.741;SOR=0.75 GT:AD:DP:GQ:PL 0/1:146,125:271:99:2890,0,3551 2 80529956 rs6733871 T C 3970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.017;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.93;ReadPosRankSum=1.011;SOR=0.809 GT:AD:DP:GQ:PL 0/1:126,140:266:99:3999,0,3284 2 84756049 rs4832089 G A 3007.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3036,299,0 2 84771480 rs1037863 G A 3750.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3779,396,0 2 84771567 rs1542477 C T 2889.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.79;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2918,311,0 2 84800605 rs11891970 C A 2716.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2745,279,0 2 84834237 rs4441485 T C 2320.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2349,221,0 2 84897517 rs1881095 A G 2913.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2942,309,0 2 84924823 rs78190897 T C 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.202;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=8.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=1.661;SOR=0.978 GT:AD:DP:GQ:PL 0/1:70,77:147:99:2037,0,1593 2 85023554 rs754273 A G 1118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.786;SOR=0.874 GT:AD:DP:GQ:PL 0/1:52,48:100:99:1147,0,1268 2 85024731 rs1192395 C T 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.656;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=-0.15;SOR=0.619 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1493,0,1140 2 85051122 rs1649292 G A 3618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.042;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=1.114;SOR=0.822 GT:AD:DP:GQ:PL 0/1:186,166:352:99:3647,0,4219 2 85536415 rs11547160 G A 4597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.936;SOR=0.64 GT:AD:DP:GQ:PL 0/1:218,194:412:99:4626,0,5284 2 85549868 rs4240199 A G 2619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.944;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.47;ReadPosRankSum=-1.117;SOR=0.476 GT:AD:DP:GQ:PL 0/1:71,110:181:99:2648,0,1447 2 85571710 rs4832171 A G 2736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=3.6;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=-0.846;QD=11.36;ReadPosRankSum=-0.223;SOR=0.935 GT:AD:DP:GQ:PL 0/1:121,120:241:99:2765,0,2832 2 85617327 rs17850708 C T 2453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.421;SOR=0.648 GT:AD:DP:GQ:PL 0/1:95,103:198:99:2482,0,2339 2 85617579 rs17851663 C T 3398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=3.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-2.145;SOR=0.907 GT:AD:DP:GQ:PL 0/1:155,136:291:99:3427,0,4012 2 85617913 rs17850709 G T 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.044;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=1.94;SOR=0.638 GT:AD:DP:GQ:PL 0/1:96,89:185:99:2333,0,2299 2 85622059 rs6886 T C 2567.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.32;ReadPosRankSum=-0.804;SOR=0.829 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2596,232,0 2 85625222 rs6885 T G 4052.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4081,399,0 2 85628745 rs2229669 C T 2244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.208;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.154;SOR=0.623 GT:AD:DP:GQ:PL 0/1:78,92:170:99:2273,0,2075 2 85628983 rs2229668 C T 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.213;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.769;SOR=0.602 GT:AD:DP:GQ:PL 0/1:103,84:187:99:1943,0,2363 2 85769711 rs1078004 C G 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.02;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.14;ReadPosRankSum=0.817;SOR=0.981 GT:AD:DP:GQ:PL 0/1:36,54:90:99:1301,0,897 2 85780131 rs2592551 G A 646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=6.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.67;ReadPosRankSum=0.768;SOR=0.629 GT:AD:DP:GQ:PL 0/1:77,37:114:99:675,0,1936 2 85780536 rs699664 C T 1771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-1.461;SOR=0.616 GT:AD:DP:GQ:PL 0/1:71,79:150:99:1800,0,1610 2 85781318 rs1254896 T G 3171.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3200,325,0 2 85806266 rs3731828 C T 2135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.079;SOR=0.767 GT:AD:DP:GQ:PL 0/1:106,91:197:99:2164,0,2612 2 85808737 rs1009 A G 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.521;QD=11.28;ReadPosRankSum=0.813;SOR=0.5 GT:AD:DP:GQ:PL 0/1:128,112:240:99:2736,0,3145 2 85818886 rs14976 C T 3469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=1.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.262;SOR=0.722 GT:AD:DP:GQ:PL 0/1:139,151:290:99:3498,0,3149 2 85824039 rs1127974 G A 1984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=4.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.974;SOR=0.467 GT:AD:DP:GQ:PL 0/1:98,87:185:99:2013,0,2627 2 85826721 rs11891495 G A 2748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.182;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.5;SOR=0.665 GT:AD:DP:GQ:PL 0/1:148,115:263:99:2777,0,3318 2 85890771 rs893159 T G 2546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.722;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.72;ReadPosRankSum=0.757;SOR=0.486 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,69:162:99:0|1:85890758_T_C:2575,0,4721 2 85893741 rs1130866 G A 1663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.071;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.14;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.033;SOR=0.587 GT:AD:DP:GQ:PL 0/1:65,71:136:99:1692,0,1497 2 85894308 rs3024798 G T 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=1.359;SOR=0.618 GT:AD:DP:GQ:PL 0/1:49,49:98:99:1069,0,1104 2 85895338 rs2077079 T G 1356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.415;SOR=0.723 GT:AD:DP:GQ:PL 0/1:55,56:111:99:1385,0,1220 2 85923133 rs138334587 T C 696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=1.341;SOR=0.919 GT:AD:DP:GQ:PL 0/1:37,32:69:99:725,0,865 2 85924729 rs11127 C T 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.238;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.919;SOR=0.641 GT:AD:DP:GQ:PL 0/1:45,52:97:99:1189,0,980 2 85925667 rs4240201 G A 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=0.552;SOR=0.554 GT:AD:DP:GQ:PL 0/1:60,48:108:99:1005,0,1577 2 85925680 rs4240202 T G 1095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.28;SOR=0.402 GT:AD:DP:GQ:PL 0/1:60,47:107:99:1124,0,1467 2 85981761 rs17851881 T C 6384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.574;ClippingRankSum=0;DB;DP=596;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=1.662;SOR=0.651 GT:AD:DP:GQ:PL 0/1:318,277:595:99:6413,0,7325 2 86259443 rs2276626 C T 1157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=1.632;SOR=0.861 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1186,0,1821 2 86305123 rs2288117 T C 4898.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4927,469,0 2 86315741 rs2288120 C T 2594.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2623,264,0 2 86317037 rs4832242 G C 1973.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2002,195,0 2 86332809 rs4832245 G A 1822.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.571 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1851,180,0 2 86371883 rs8244 T C 2150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=0.285;SOR=0.839 GT:AD:DP:GQ:PL 0/1:86,86:172:99:2179,0,2172 2 86393770 . TA T 34.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=117;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.35;ReadPosRankSum=0.908;SOR=0.555 GT:AD:DP:GQ:PL 0/1:82,16:104:72:72,0,1977 2 86400824 rs1050301 G A 780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.7;SOR=0.984 GT:AD:DP:GQ:PL 0/1:34,37:71:99:809,0,774 2 86433240 rs10901 C T 1494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.064;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=4.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=0.223;SOR=1.165 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1523,0,1566 2 86481835 rs2276625 C T 558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.82;ReadPosRankSum=-0.045;SOR=0.826 GT:AD:DP:GQ:PL 0/1:66,30:96:99:587,0,1641 2 86683642 rs2030259 A G 2607.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=31.04;SOR=1.275 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2636,250,0 2 86691250 rs12714187 G A 3010.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3039,303,0 2 86693826 rs34605051 T C 1474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.538;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=-2.159;SOR=0.661 GT:AD:DP:GQ:PL 0/1:50,56:106:99:1503,0,1241 2 86707504 rs4832290 T C 2311.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2340,231,0 2 86756381 rs11548929 T G 2807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.503;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.979;SOR=0.474 GT:AD:DP:GQ:PL 0/1:112,114:226:99:2836,0,2708 2 86850022 rs396354 T C 7762.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7791,711,0 2 86947783 rs76239019 C T 5690.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.15;QD=29.33;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5719,581,0 2 86979093 rs10186663 G A 1527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.862;SOR=0.757 GT:AD:DP:GQ:PL 0/1:53,63:116:99:1556,0,1233 2 87015633 rs71378806 T TGA 3196.73 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.79;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,73:73:99:3234,220,0 2 87016506 rs3020726 A G 1449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.909;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=0.589;SOR=0.757 GT:AD:DP:GQ:PL 0/1:52,59:111:99:1478,0,1117 2 87042825 rs35555413 T C 758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.738;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=1.78;SOR=1.112 GT:AD:DP:GQ:PL 0/1:34,32:66:99:787,0,797 2 87069431 rs4514875 C T 1134.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.23;QD=31.52;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1163,108,0 2 87073852 rs2228022 C T 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.081;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.27;MQRankSum=2.851;QD=8.8;ReadPosRankSum=1.38;SOR=0.711 GT:AD:DP:GQ:PL 0/1:53,35:88:99:803,0,1225 2 87088964 rs62146888 A G 1039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.85;MQRankSum=-1.973;QD=9.45;ReadPosRankSum=-0.26;SOR=0.631 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1068,0,1542 2 87211874 rs191726137 T C 244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.717;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.5;MQ=45.08;MQRankSum=-6.67;QD=3.18;ReadPosRankSum=2.011;SOR=0.377 GT:AD:DP:GQ:PL 0/1:55,22:77:99:273,0,1354 2 87243501 rs199986885 T C 62.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.55;MQRankSum=0.431;QD=5.23;ReadPosRankSum=0.947;SOR=0.269 GT:AD:DP:GQ:PL 0/1:8,4:12:91:91,0,190 2 88387403 rs1542088 C A 1730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=-1.141;SOR=0.78 GT:AD:DP:GQ:PL 0/1:125,77:202:99:1759,0,3222 2 88472791 rs4129190 G A 6109.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6138,639,0 2 88474370 rs2139100 A G 5067.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=1.439 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5096,480,0 2 88751751 rs11456039 A AG 4015.73 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;QD=36.51;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,110:110:99:4053,331,0 2 88874891 rs1805165 C A 2243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=1.139;SOR=0.89 GT:AD:DP:GQ:PL 0/1:83,94:177:99:2272,0,2140 2 88895123 rs13045 T C 1737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.445;SOR=0.8 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1766,0,1656 2 88913273 rs867529 G C 1507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.307;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=2.187;SOR=0.456 GT:AD:DP:GQ:PL 0/1:86,64:150:99:1536,0,2032 2 88926729 . CCAGCAG C,CCAG 11806.7 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=356;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.03;QD=41.43;SOR=1.037 GT:AD:DP:GQ:PL 1/2:0,26,259:287:99:11844,10835,11084,1020,0,251 2 95816017 rs34282100 T TA 347.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.902;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=10.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.656;SOR=2.391 GT:AD:DP:GQ:PL 0/1:13,22:57:99:355,0,259 2 95847040 rs10578519 TGCG T 10529.7 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=44.24;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,238:238:99:10567,717,0 2 95944902 rs61086044 A AC 1565.73 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=34.79;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1603,135,0 2 95947085 rs12992066 A G 7700.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7729,768,0 2 96265165 rs200456827 C T 175.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.951;ClippingRankSum=-0;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.87;MQRankSum=-1.728;QD=10.99;ReadPosRankSum=-0.967;SOR=0.693 GT:AD:DP:GQ:PL 0/1:8,8:16:99:204,0,287 2 96521138 rs5005871 T C 5367.77 SNP_MQRankSum_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.313;ClippingRankSum=0;DB;DP=524;ExcessHet=3.0103;FS=36.2;MLEAC=1;MLEAF=0.5;MQ=55.01;MQRankSum=-17.781;QD=10.3;ReadPosRankSum=-9.938;SOR=2.453 GT:AD:DP:GQ:PL 0/1:342,179:521:99:5396,0,8837 2 96521154 rs77972623 C G 152.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0;DB;DP=666;ExcessHet=3.0103;FS=4.403;MLEAC=1;MLEAF=0.5;MQ=52.32;MQRankSum=-6.981;QD=0.23;ReadPosRankSum=-2.303;SOR=1.242 GT:AD:DP:GQ:PL 0/1:594,72:666:99:181,0,21003 2 96521220 rs5005870 G A 9224.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-10.595;ClippingRankSum=0;DB;DP=1107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=47.16;MQRankSum=-12.507;QD=8.35;ReadPosRankSum=5.407;SOR=0.707 GT:AD:DP:GQ:PL 0/1:608,497:1105:99:9253,0,15739 2 96521297 rs5005869 T C 11180.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.014;ClippingRankSum=0;DB;DP=845;ExcessHet=3.0103;FS=13.581;MLEAC=1;MLEAF=0.5;MQ=44.09;MQRankSum=-19.034;QD=13.23;ReadPosRankSum=-0.041;SOR=1.174 GT:AD:DP:GQ:PL 0/1:373,472:845:99:11209,0,8654 2 96521324 rs5005868 A G 9579.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.673;ClippingRankSum=0;DB;DP=625;ExcessHet=3.0103;FS=32.857;MLEAC=1;MLEAF=0.5;MQ=45.57;MQRankSum=-18.099;QD=15.33;ReadPosRankSum=-4.034;SOR=1.826 GT:AD:DP:GQ:PGT:PID:PL 0/1:346,279:625:99:0|1:96521324_A_G:9608,0,13232 2 96521334 rs201192250 T C 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.511;ClippingRankSum=0;DB;DP=578;ExcessHet=3.0103;FS=14.477;MLEAC=1;MLEAF=0.5;MQ=46.91;MQRankSum=-9.683;QD=2.58;ReadPosRankSum=-2.677;SOR=1.881 GT:AD:DP:GQ:PL 0/1:476,102:578:99:1519,0,18342 2 96521336 rs5005867 T C 7823.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.3;ClippingRankSum=0;DB;DP=570;ExcessHet=3.0103;FS=37.801;MLEAC=1;MLEAF=0.5;MQ=47.17;MQRankSum=-17.348;QD=13.73;ReadPosRankSum=-4.263;SOR=2.172 GT:AD:DP:GQ:PGT:PID:PL 0/1:365,205:570:99:0|1:96521324_A_G:7852,0,13979 2 96523047 rs12717778 A G 4820.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.36;QD=29.58;SOR=1.324 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4849,488,0 2 96523096 rs10211258 T C 7316.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.52;QD=29.38;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7345,746,0 2 96546352 rs189877528 G A 956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.413;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.5;MQ=46.39;MQRankSum=-1.464;QD=10.75;ReadPosRankSum=1.075;SOR=0.9 GT:AD:DP:GQ:PL 0/1:49,40:89:99:985,0,1262 2 96548068 rs11695514 C T 5917.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.97;QD=29.59;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5946,600,0 2 96551974 rs202079647 A G 475.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.27;QD=27.99;SOR=5.784 GT:AD:DP:GQ:PL 1/1:0,17:17:51:504,51,0 2 96606952 rs139886833 TA T 156.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.309;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=5.481;MLEAC=1;MLEAF=0.5;MQ=56.81;MQRankSum=-7.539;QD=1.89;ReadPosRankSum=-1.139;SOR=1.288 GT:AD:DP:GQ:PL 0/1:62,21:97:99:194,0,1461 2 96626292 rs4362598 C T 2292.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.24;QD=32.29;SOR=1.852 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2321,213,0 2 96689084 rs113262512 G A 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.305;SOR=0.674 GT:AD:DP:GQ:PL 0/1:112,113:225:99:2552,0,2729 2 96698126 rs200882167 T C 817.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.66;QD=30.29;SOR=6.666 GT:AD:DP:GQ:PL 1/1:0,27:27:81:846,81,0 2 96780716 rs2229169 T G 3206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=-0.319;SOR=0.569 GT:AD:DP:GQ:PL 0/1:111,126:237:99:3235,0,2928 2 96780986 rs34667759 C CTCCTCCTCT 4831.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.175;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=2.148;QD=19.56;ReadPosRankSum=2.009;SOR=0.807 GT:AD:DP:GQ:PL 0/1:134,113:252:99:4869,0,5928 2 96789787 rs893173 T C 2777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.878;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-2.322;SOR=0.681 GT:AD:DP:GQ:PL 0/1:123,110:233:99:2806,0,3040 2 96795608 rs1657502 T G 2690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.196;SOR=0.638 GT:AD:DP:GQ:PL 0/1:123,119:242:99:2719,0,3011 2 96795714 rs749459 G A 2199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=1.472;SOR=0.784 GT:AD:DP:GQ:PL 0/1:116,91:207:99:2228,0,3104 2 96795857 rs749458 T C 3091.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.431 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3120,303,0 2 96943473 rs3214063 T C 2405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.593;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=0.642;SOR=0.541 GT:AD:DP:GQ:PL 0/1:85,88:173:99:2434,0,2115 2 96944553 rs772175 G A 2771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=6.246;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=-0.017;SOR=0.635 GT:AD:DP:GQ:PL 0/1:78,111:189:99:2800,0,1874 2 96952833 rs3171927 A G 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.242;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=4.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.007;SOR=1.188 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1416,0,1502 2 96993757 rs2279105 C T 2997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.23;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=1.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-2.373;SOR=0.82 GT:AD:DP:GQ:PL 0/1:128,121:249:99:3026,0,3192 2 96993884 rs1048675 A G 2931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=0.558;SOR=0.816 GT:AD:DP:GQ:PL 0/1:100,116:216:99:2960,0,2484 2 97020049 rs3731935 T C 2674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.678;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.072;SOR=0.736 GT:AD:DP:GQ:PL 0/1:115,103:218:99:2703,0,2817 2 97030247 rs2305935 T C 1123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.787;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=0.489;SOR=0.492 GT:AD:DP:GQ:PL 0/1:62,44:106:99:1152,0,1464 2 97166204 rs3731938 A G 8398.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8427,842,0 2 97216846 rs150396730 G A 2672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.347;SOR=0.749 GT:AD:DP:GQ:PL 0/1:108,112:220:99:2701,0,2569 2 97351840 rs7599598 A G 10483.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,341:341:99:10512,1022,0 2 97357108 rs62156206 G A 3266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.83;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=4.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.768;SOR=0.737 GT:AD:DP:GQ:PL 0/1:139,132:271:99:3295,0,3781 2 97359236 rs62156207 C A 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.618;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.116;SOR=1.018 GT:AD:DP:GQ:PL 0/1:80,78:158:99:1926,0,1902 2 97359364 rs61750875 A G 3413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.83;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.75;SOR=0.68 GT:AD:DP:GQ:PL 0/1:128,140:268:99:3442,0,2943 2 97360079 rs72809820 C T 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.6;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-0.773;SOR=0.687 GT:AD:DP:GQ:PL 0/1:36,51:87:99:1181,0,984 2 97366088 rs61742095 T C 2558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.386;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.585;SOR=0.899 GT:AD:DP:GQ:PL 0/1:117,99:216:99:2587,0,2809 2 97493877 rs1320149 T C 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.589;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=0.119;SOR=0.669 GT:AD:DP:GQ:PL 0/1:64,85:149:99:2107,0,1336 2 97508082 rs58147284 G C 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.845;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.392;SOR=0.231 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1216,0,746 2 97559759 rs11677797 G A 2362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.666;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.765;SOR=0.487 GT:AD:DP:GQ:PL 0/1:77,104:181:99:2391,0,1919 2 97568453 rs11888101 A G 678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.991;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-0.031;SOR=0.707 GT:AD:DP:GQ:PL 0/1:34,30:64:99:707,0,783 2 97613616 rs1624844 T C 472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.06;ReadPosRankSum=-0.344;SOR=0.846 GT:AD:DP:GQ:PL 0/1:44,23:67:99:501,0,1146 2 97617140 rs1257019 T C 1135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.676;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.77;ReadPosRankSum=-1.321;SOR=1.062 GT:AD:DP:GQ:PL 0/1:31,41:72:99:1164,0,678 2 97617227 rs1257018 A G 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.37;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=0.811;SOR=0.624 GT:AD:DP:GQ:PL 0/1:44,76:120:99:1779,0,958 2 97633267 rs113319086 G C 921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.418;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=0.243;SOR=0.836 GT:AD:DP:GQ:PL 0/1:64,43:107:99:950,0,1450 2 97637905 rs6715329 T C 4174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.299;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=5.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.81;ReadPosRankSum=0.575;SOR=0.437 GT:AD:DP:GQ:PL 0/1:111,153:264:99:4203,0,2571 2 97638038 rs1730120 A G 2577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.943;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=1.663;SOR=0.668 GT:AD:DP:GQ:PL 0/1:95,96:191:99:2606,0,2244 2 97751457 rs149233824 C T 3803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.091;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.54;MQRankSum=0.521;QD=9.83;ReadPosRankSum=2.182;SOR=0.692 GT:AD:DP:GQ:PL 0/1:218,169:387:99:3832,0,5636 2 97757347 rs147890593 G A 3822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.33;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.98;MQRankSum=-3.107;QD=10.95;ReadPosRankSum=0.029;SOR=0.713 GT:AD:DP:GQ:PL 0/1:185,164:349:99:3851,0,4473 2 97783831 rs200765455 C T 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=46.28;MQRankSum=-4.077;QD=8.32;ReadPosRankSum=0.839;SOR=0.736 GT:AD:DP:GQ:PL 0/1:124,81:205:99:1734,0,3119 2 97827818 . CT C 164.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.5;MQ=57.08;MQRankSum=-7.269;QD=1.68;ReadPosRankSum=-0.303;SOR=0.84 GT:AD:DP:GQ:PL 0/1:77,21:101:99:202,0,1821 2 97873657 rs13419360 G C 161.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.084;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=54.76;MLEAC=1;MLEAF=0.5;MQ=55.6;MQRankSum=-8.663;QD=0.89;ReadPosRankSum=0.02;SOR=6.091 GT:AD:DP:GQ:PL 0/1:162,20:182:99:190,0,4654 2 97877292 rs10171441 C A 3124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=-0.128;SOR=0.61 GT:AD:DP:GQ:PL 0/1:90,124:214:99:3153,0,2125 2 97877399 rs10186233 T C 2613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.408;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=0.425;SOR=0.583 GT:AD:DP:GQ:PL 0/1:87,96:183:99:2642,0,2157 2 97881267 rs6756986 G A 2058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.082;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.79;MLEAC=1;MLEAF=0.5;MQ=53.9;MQRankSum=-0.541;QD=10.95;ReadPosRankSum=0.115;SOR=0.842 GT:AD:DP:GQ:PL 0/1:100,88:188:99:2087,0,2301 2 97915895 rs201565865 T C 75.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.83;MQRankSum=-1.645;QD=15.15;ReadPosRankSum=-0.524;SOR=1.022 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,3:5:75:0|1:97915895_T_C:104,0,75 2 97915896 rs199628660 G A 75.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0;ClippingRankSum=-0;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.03;MQRankSum=-1.383;QD=18.94;ReadPosRankSum=-0;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,2:4:75:0|1:97915895_T_C:104,0,75 2 98844674 rs7601049 C G 3636.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3665,350,0 2 98853173 rs11889349 G A 5436.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5465,540,0 2 98928494 rs7587534 G A 10801.8 PASS AC=2;AF=1;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,375:375:99:10830,1120,0 2 99149946 rs2278211 G A 2378.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.34;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2407,258,0 2 99152615 rs61748140 G A 638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.513;SOR=0.836 GT:AD:DP:GQ:PL 0/1:25,27:52:99:667,0,609 2 99172244 rs2278206 A G 6215.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6244,579,0 2 99193496 rs2230388 C T 6920.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,242:242:99:6949,725,0 2 99226173 rs1062847 T A 3291.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.25;SOR=1.969 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3320,297,0 2 99721804 . CT C 298.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.743;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=6.834;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.536;QD=5.43;ReadPosRankSum=0.032;SOR=1.573 GT:AD:DP:GQ:PL 0/1:35,20:66:99:336,0,742 2 99778985 rs2632277 T C 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.124;SOR=0.743 GT:AD:DP:GQ:PL 0/1:98,80:178:99:1799,0,2291 2 99779131 rs2516835 T C 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=-0.338;SOR=0.703 GT:AD:DP:GQ:PL 0/1:62,72:134:99:1854,0,1499 2 99804642 rs10865030 T C 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.798;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-1.629;SOR=0.329 GT:AD:DP:GQ:PL 0/1:36,42:78:99:917,0,921 2 99812070 rs1044575 G A 2333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.351;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-1.01;QD=11.11;ReadPosRankSum=0.404;SOR=0.625 GT:AD:DP:GQ:PL 0/1:107,103:210:99:2362,0,2462 2 99936265 . TA T 178.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.26;ReadPosRankSum=0.684;SOR=0.603 GT:AD:DP:GQ:PL 0/1:28,14:44:99:216,0,582 2 99992822 rs7558074 A C 1138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.6;ReadPosRankSum=0.026;SOR=0.437 GT:AD:DP:GQ:PL 0/1:29,44:73:99:1167,0,686 2 99995804 rs1376443 T C 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.656;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=2.261;SOR=0.636 GT:AD:DP:GQ:PL 0/1:50,46:96:99:1206,0,1236 2 100019496 rs2305354 A G 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=1.585;SOR=0.703 GT:AD:DP:GQ:PL 0/1:95,80:175:99:1859,0,2106 2 100055158 rs3087399 T C 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.769;SOR=0.638 GT:AD:DP:GQ:PL 0/1:65,58:123:99:1373,0,1604 2 100055506 rs3087386 A G 2280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.69;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=4.966;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.84;ReadPosRankSum=-0.317;SOR=0.653 GT:AD:DP:GQ:PL 0/1:63,81:144:99:2309,0,1570 2 100218080 rs4851214 G A 6841.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=30.96;SOR=1.494 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6870,663,0 2 100343557 rs4851223 C T 3556.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3585,366,0 2 100915772 rs4851287 A G 3101.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3130,315,0 2 100916306 rs2033748 A G 4900.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.76;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,112:112:99:1|1:100916306_A_G:4929,340,0 2 100916315 rs11123823 A G 4808.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.72;SOR=0.976 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,110:110:99:1|1:100916306_A_G:4837,331,0 2 100917109 rs13006224 C T 3171.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3200,318,0 2 100938226 rs74177694 G C 6568.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.87;SOR=0.912 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,169:169:99:1|1:100938226_G_C:6597,511,0 2 100938241 rs192225848 G A 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.263;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=3.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.104;SOR=0.495 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,102:186:99:0|1:100938226_G_C:2402,0,1859 2 100938328 rs74177695 T C 7002.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7031,716,0 2 100938481 rs74177696 C G 9354.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.03;QD=30.08;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9383,933,0 2 101010082 rs3748930 G C 5895.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5924,570,0 2 101014363 rs2241809 C T 3186.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3215,336,0 2 101192883 rs4618078 G A 735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=-4.004;QD=3.77;ReadPosRankSum=-1.801;SOR=1.006 GT:AD:DP:GQ:PL 0/1:148,47:195:99:764,0,3818 2 101591304 rs2305160 A G 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.195;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=6.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-0.809;SOR=0.558 GT:AD:DP:GQ:PL 0/1:67,78:145:99:1897,0,1554 2 101609827 rs9223 C T 1125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.847;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=7.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-1.585;SOR=1.356 GT:AD:DP:GQ:PL 0/1:85,45:130:99:1154,0,2249 2 101612051 rs2305158 G A 2355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.777;SOR=0.757 GT:AD:DP:GQ:PL 0/1:106,98:204:99:2384,0,2581 2 101619283 rs2278724 C G 2301.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2330,219,0 2 101624471 rs746924 T C 7064.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,217:217:99:7093,652,0 2 101638888 rs3739014 A G 8820.77 PASS AC=2;AF=1;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,299:299:99:8849,896,0 2 101644855 rs11683877 G A 2454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.394;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-0.858;SOR=0.914 GT:AD:DP:GQ:PL 0/1:111,101:212:99:2483,0,2734 2 101646144 rs3739015 G A 2890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=4.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=1.703;SOR=0.931 GT:AD:DP:GQ:PL 0/1:105,122:227:99:2919,0,2451 2 101656726 rs2289953 T C 8186.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8215,860,0 2 101898412 rs13151 G C 2199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=0.359;SOR=0.836 GT:AD:DP:GQ:PL 0/1:66,90:156:99:2228,0,1743 2 101925026 rs11123868 T C 5314.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=1.307 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5343,525,0 2 102003633 rs11554173 G T 4305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=0.138;SOR=0.838 GT:AD:DP:GQ:PL 0/1:143,180:323:99:4334,0,3357 2 102018878 rs11123876 G A 1035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=11.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.912;SOR=0.176 GT:AD:DP:GQ:PL 0/1:51,45:96:99:1064,0,1423 2 102018908 rs2175968 A G 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.013;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.444;SOR=1.215 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1689,0,1539 2 102029548 rs1554070 G A 907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.019;SOR=0.593 GT:AD:DP:GQ:PL 0/1:38,38:76:99:936,0,1071 2 102038849 rs4851436 T A 2324.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.35;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2353,246,0 2 102626148 rs2230400 C A 1932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.141;SOR=1.005 GT:AD:DP:GQ:PL 0/1:85,82:167:99:1961,0,2254 2 102626208 rs143906708 A G 1824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.398;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.772;SOR=0.575 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1853,0,1833 2 102781649 rs2228139 C G 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.275;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-2.151;SOR=0.54 GT:AD:DP:GQ:PL 0/1:44,40:84:99:1079,0,1074 2 102959646 rs62152661 A G 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.076;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.495;SOR=0.602 GT:AD:DP:GQ:PL 0/1:77,71:148:99:1868,0,1874 2 102968007 rs4988956 G A 938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.28;ReadPosRankSum=1.436;SOR=0.675 GT:AD:DP:GQ:PL 0/1:80,49:129:99:967,0,1974 2 102968075 rs4988957 T C 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.141;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.53;ReadPosRankSum=-0.723;SOR=0.527 GT:AD:DP:GQ:PL 0/1:100,57:157:99:1210,0,2313 2 102968211 rs10192036 C A 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.77;ReadPosRankSum=1.833;SOR=0.634 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,62:146:99:0|1:102968211_C_A:2331,0,3358 2 102968212 rs10204137 A G 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.1;ReadPosRankSum=1.553;SOR=0.65 GT:AD:DP:GQ:PGT:PID:PL 0/1:81,62:143:99:0|1:102968211_C_A:2331,0,3358 2 102968285 rs4988958 T C 1585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.533;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-3.266;SOR=0.821 GT:AD:DP:GQ:PL 0/1:95,64:159:99:1614,0,2350 2 102968356 rs10192157 C T 1970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.701;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.65;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=1.707;SOR=0.769 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,55:135:99:0|1:102968356_C_T:1999,0,3046 2 102968362 rs10206753 T C 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.17;ReadPosRankSum=1.418;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,55:130:99:0|1:102968356_C_T:2000,0,2974 2 102984279 rs1420098 T C 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.04;SOR=0.885 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1640,0,1519 2 103001402 rs1035130 C T 857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.144;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=0.59;SOR=0.68 GT:AD:DP:GQ:PL 0/1:46,37:83:99:886,0,1153 2 103010912 rs1420096 C T 704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=0.692;SOR=0.669 GT:AD:DP:GQ:PL 0/1:49,35:84:99:733,0,1186 2 103095404 rs11692304 G A 8421.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8450,837,0 2 103136309 rs1403550 T C 4341.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4370,449,0 2 103149100 rs1014286 G A 6034.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.516 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6063,600,0 2 103149162 rs2008159 A G 3485.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.98;SOR=2.115 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3514,327,0 2 103324575 rs17833353 T C 1385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.728;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=1.491;SOR=0.928 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1414,0,1711 2 103334969 rs1052431 G A 3364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.868;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=1.516;SOR=0.628 GT:AD:DP:GQ:PL 0/1:144,138:282:99:3393,0,3559 2 103335441 rs33993717 A G 2863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.695;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=0.431;SOR=0.806 GT:AD:DP:GQ:PL 0/1:110,110:220:99:2892,0,2587 2 103431404 rs887987 T C 3499.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3528,351,0 2 105472055 rs186512421 T C 237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.86;ReadPosRankSum=1.329;SOR=0.569 GT:AD:DP:GQ:PL 0/1:5,11:16:96:266,0,96 2 105709023 rs6543282 T C 3616.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3645,372,0 2 105885961 rs2241797 T C 9736.77 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,325:325:99:9765,973,0 2 105889349 rs11676273 G A 7202.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7231,764,0 2 105977761 rs11124029 G A 1163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.698;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=1.59;SOR=0.473 GT:AD:DP:GQ:PL 0/1:58,50:108:99:1192,0,1391 2 105979730 rs2278502 C A 1315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.94;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-1.224;SOR=0.952 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1344,0,1285 2 106015412 rs76810592 G C 3051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.383;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.902;SOR=0.679 GT:AD:DP:GQ:PL 0/1:135,128:263:99:3080,0,3322 2 106721255 rs56197411 G A 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=6.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=-1.554;SOR=0.908 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1215,0,1646 2 106742139 rs4851925 C T 3309.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3338,338,0 2 107039937 . C T 82.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.643;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=9.583;MLEAC=1;MLEAF=0.5;MQ=28.68;MQRankSum=-0.51;QD=1.06;ReadPosRankSum=-1.831;SOR=2.677 GT:AD:DP:GQ:PL 0/1:66,12:78:99:111,0,1858 2 107040372 rs200719868 C G 5491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.711;ClippingRankSum=0;DB;DP=446;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.81;MQRankSum=0.034;QD=12.31;ReadPosRankSum=1.646;SOR=0.72 GT:AD:DP:GQ:PL 0/1:237,209:446:99:5520,0,6101 2 107049714 rs143879890 C G 2923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.977;ClippingRankSum=0;DB;DP=702;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.5;MQ=43.57;MQRankSum=-2.227;QD=4.17;ReadPosRankSum=-2.286;SOR=0.534 GT:AD:DP:GQ:PL 0/1:511,190:701:99:2952,0,12785 2 107073469 rs76857936 T A 9137.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-5.705;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=52.563;MLEAC=2;MLEAF=1;MQ=51.77;MQRankSum=7.425;QD=24.11;ReadPosRankSum=2.376;SOR=0.003 GT:AD:DP:GQ:PL 1/1:22,357:379:99:9166,169,0 2 107073501 rs72627454 C T 9435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-11.609;ClippingRankSum=0;DB;DP=426;ExcessHet=3.0103;FS=46.625;MLEAC=1;MLEAF=0.5;MQ=51.13;MQRankSum=9.314;QD=22.15;ReadPosRankSum=1.428;SOR=0.136 GT:AD:DP:GQ:PL 0/1:37,389:426:99:9464,0,339 2 107423188 rs1470591 G A 1934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.852;SOR=0.632 GT:AD:DP:GQ:PL 0/1:95,83:178:99:1963,0,2403 2 107423395 rs1470590 T G 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.502;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.211;SOR=0.423 GT:AD:DP:GQ:PL 0/1:83,58:141:99:1495,0,2017 2 107460345 rs62155507 A T 2214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.239;SOR=0.639 GT:AD:DP:GQ:PL 0/1:87,99:189:99:2243,0,2062 2 108443511 rs7576738 C G 16437.8 PASS AC=2;AF=1;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.31;QD=38.32;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,429:429:99:16466,1304,0 2 108455303 rs374479117 G T 1197.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;BaseQRankSum=1.818;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=13.617;MLEAC=2;MLEAF=1;MQ=24.93;MQRankSum=-2.253;QD=26.04;ReadPosRankSum=-0.633;SOR=6.228 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1226,128,0 2 108475928 rs143215949 C T 179.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.44;ClippingRankSum=0;DB;DP=575;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.89;MQRankSum=-13.256;QD=0.31;ReadPosRankSum=5.238;SOR=0.642 GT:AD:DP:GQ:PL 0/1:497,78:575:99:208,0,12990 2 108475958 rs142985549 A G 13836.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=4.279;ClippingRankSum=0;DB;DP=594;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.69;MQRankSum=13.182;QD=23.29;ReadPosRankSum=-3.853;SOR=0.595 GT:AD:DP:GQ:PL 1/1:70,524:594:38:13865,38,0 2 108479432 rs200501106 G A 5076.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.45;QD=27.44;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5105,554,0 2 108479487 rs199689341 A T 3066.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=4.503;MLEAC=2;MLEAF=1;MQ=36.44;MQRankSum=-0.331;QD=27.88;ReadPosRankSum=-0.609;SOR=1.297 GT:AD:DP:GQ:PL 1/1:1,109:110:99:3095,287,0 2 108487330 rs148409227 A G 15000.8 PASS AC=2;AF=1;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.32;QD=30.74;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,488:488:99:15029,1464,0 2 108487826 rs62150212 C T 4108.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.1;QD=43.25;SOR=5.828 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,95:95:99:1|1:108487826_C_T:4137,286,0 2 108487829 rs141407602 G C 4024.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.08;QD=46.8;SOR=7.523 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,86:86:99:1|1:108487826_C_T:4053,277,0 2 108487966 rs832357 A G 143.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.99;QD=28.78;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,5:5:15:172,15,0 2 108488742 rs147825872 G T 2739.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=36.58;MQRankSum=-2.826;QD=8.48;ReadPosRankSum=2.38;SOR=0.626 GT:AD:DP:GQ:PL 0/1:195,128:323:99:2768,0,4669 2 108496435 rs832352 T A 7598.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.55;QD=29.68;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7627,765,0 2 108863758 rs112050262 G A 1728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-1.447;SOR=0.85 GT:AD:DP:GQ:PL 0/1:68,67:135:99:1757,0,1620 2 108863767 rs9308806 A C 5057.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.39;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,139:139:99:5086,423,0 2 108875198 rs2219078 G A 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.743;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=1.871;SOR=0.587 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1136,0,991 2 108875244 rs6722745 T C 3455.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.21;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3484,381,0 2 108875267 rs111455491 T C 1091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.723;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-0.015;SOR=0.77 GT:AD:DP:GQ:PL 0/1:74,52:126:99:1120,0,1572 2 108922036 rs17036104 T G 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.67;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.943;SOR=0.474 GT:AD:DP:GQ:PL 0/1:94,97:191:99:2439,0,2437 2 109003862 . AGACT A 1633.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.294;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1;QD=19.45;ReadPosRankSum=0.21;SOR=1.001 GT:AD:DP:GQ:PL 0/1:41,43:84:99:1671,0,2433 2 109099572 rs2718698 C G 1234.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1263,129,0 2 109103108 rs3754925 C T 1054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=-0.553;SOR=0.501 GT:AD:DP:GQ:PL 0/1:63,51:114:99:1083,0,1610 2 109106381 rs12104502 A G 1270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.741;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-1.393;SOR=0.858 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1299,0,1392 2 109347947 rs826526 T G 2861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.575;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=1.866;QD=13.63;ReadPosRankSum=2.788;SOR=0.372 GT:AD:DP:GQ:PL 0/1:98,112:210:99:2890,0,2365 2 109352542 rs826577 G A 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=8.261;MLEAC=1;MLEAF=0.5;MQ=52.62;MQRankSum=-8.816;QD=7.61;ReadPosRankSum=0.838;SOR=1.238 GT:AD:DP:GQ:PL 0/1:149,75:224:99:1733,0,4129 2 109367977 rs144029181 A G 2108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.738;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=13.393;MLEAC=1;MLEAF=0.5;MQ=44.12;MQRankSum=-8.988;QD=9.63;ReadPosRankSum=2.645;SOR=1.436 GT:AD:DP:GQ:PL 0/1:139,80:219:99:2137,0,3981 2 109374952 rs826549 A G 3640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.5;MQ=54.02;MQRankSum=-5.887;QD=8.43;ReadPosRankSum=-0.164;SOR=0.901 GT:AD:DP:GQ:PL 0/1:255,177:432:99:3669,0,6186 2 109389463 rs826580 G A 3459.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3488,359,0 2 109408208 rs6740879 G A 985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.66;SOR=0.885 GT:AD:DP:GQ:PL 0/1:41,43:84:99:1014,0,972 2 109429146 rs975597 T A 1062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.988;SOR=0.578 GT:AD:DP:GQ:PL 0/1:46,45:91:99:1091,0,1134 2 109513654 rs12623957 G A 3990.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.539 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4019,396,0 2 109526969 rs260632 G A 2700.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.166 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2729,269,0 2 109746039 rs34609468 G A 2842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.548;SOR=0.504 GT:AD:DP:GQ:PL 0/1:123,129:252:99:2871,0,2978 2 110372192 rs6594048 A G 9059.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,287:287:99:9088,861,0 2 110959026 rs33958626 G T 470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.228;SOR=0.784 GT:AD:DP:GQ:PL 0/1:23,22:45:99:499,0,573 2 111406968 . G GA 107.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.61;ReadPosRankSum=0.655;SOR=0.716 GT:AD:DP:GQ:PL 0/1:51,16:85:99:145,0,1068 2 111551763 rs13388313 A G 1591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.808;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.883;SOR=0.639 GT:AD:DP:GQ:PL 0/1:84,69:153:99:1620,0,1832 2 111559231 rs34466366 C A 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.327;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-0.065;SOR=0.61 GT:AD:DP:GQ:PL 0/1:48,36:84:99:821,0,1171 2 111907691 rs724710 T C 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.464;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=0.96;SOR=0.623 GT:AD:DP:GQ:PL 0/1:77,93:170:99:2422,0,1790 2 112526866 rs137999262 G A 614.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=37.18;MQRankSum=-0.89;QD=10.79;ReadPosRankSum=-0.439;SOR=0.906 GT:AD:DP:GQ:PL 0/1:28,29:57:99:643,0,604 2 112536264 rs76115652 G T 691.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.78;QD=32.94;SOR=4.712 GT:AD:DP:GQ:PL 1/1:0,21:21:63:720,63,0 2 112552427 rs190739040 C T 214.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.265;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=4.328;MLEAC=1;MLEAF=0.5;MQ=32.1;MQRankSum=-0.352;QD=8.26;ReadPosRankSum=1.111;SOR=0.148 GT:AD:DP:GQ:PL 0/1:16,10:26:99:243,0,425 2 112560090 rs142711068 G A 168.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.2;ClippingRankSum=-0;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=28.17;MQRankSum=-0;QD=18.75;ReadPosRankSum=0.549;SOR=2.093 GT:AD:DP:GQ:PL 0/1:2,7:9:36:197,0,36 2 112566517 rs201128688 C T 600.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27.43;MQRankSum=0;QD=8.12;ReadPosRankSum=-0.39;SOR=0.68 GT:AD:DP:GQ:PL 0/1:45,29:74:99:629,0,1029 2 112605302 rs4848197 C T 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.247;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=16.682;MLEAC=1;MLEAF=0.5;MQ=52.2;MQRankSum=-6.053;QD=10.68;ReadPosRankSum=-1.452;SOR=2.596 GT:AD:DP:GQ:PL 0/1:50,29:79:99:872,0,1279 2 112614429 rs72936240 G A 320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.284;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.219;MLEAC=1;MLEAF=0.5;MQ=55.88;MQRankSum=-4.981;QD=2.77;ReadPosRankSum=3.457;SOR=0.37 GT:AD:DP:GQ:PL 0/1:89,27:116:99:349,0,2342 2 112619981 rs201128090 G A 67.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.615;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=18.072;MLEAC=1;MLEAF=0.5;MQ=51.94;MQRankSum=-5.479;QD=0.71;ReadPosRankSum=-2.048;SOR=3.937 GT:AD:DP:GQ:PL 0/1:83,12:95:96:96,0,2294 2 112832535 rs71385858 CAAT C 826.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.68;ReadPosRankSum=2.029;SOR=0.527 GT:AD:DP:GQ:PL 0/1:20,22:42:99:864,0,1078 2 112854816 rs139530431 T C 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.113;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.314;SOR=0.83 GT:AD:DP:GQ:PL 0/1:35,31:66:99:861,0,874 2 112856165 rs4849007 C A 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.07;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-2.476;SOR=0.638 GT:AD:DP:GQ:PL 0/1:52,80:132:99:1809,0,1250 2 113089267 rs7601200 T C 3331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.018;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=5.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17;ReadPosRankSum=0.564;SOR=0.467 GT:AD:DP:GQ:PL 0/1:75,121:196:99:3360,0,1714 2 113090047 rs4578863 T C 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.125;SOR=0.723 GT:AD:DP:GQ:PL 0/1:84,83:167:99:1956,0,1984 2 113145814 rs200737546 C T 6754.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-4.632;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=1.339;MLEAC=2;MLEAF=1;MQ=31.85;MQRankSum=1.269;QD=24.39;ReadPosRankSum=-0.727;SOR=0.509 GT:AD:DP:GQ:PL 1/1:8,269:277:99:6783,577,0 2 113147159 rs376193885 G A 8630.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.006;ClippingRankSum=0;DB;DP=1028;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.45;MQRankSum=-7.573;QD=8.41;ReadPosRankSum=-3.581;SOR=0.725 GT:AD:DP:GQ:PL 0/1:586,440:1026:99:8659,0,12622 2 113147238 . A G 2854.77 SNP_FS_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.518;ClippingRankSum=0;DP=344;ExcessHet=3.0103;FS=62.033;MLEAC=1;MLEAF=0.5;MQ=31.83;MQRankSum=-8.221;QD=8.3;ReadPosRankSum=1.452;SOR=4.523 GT:AD:DP:GQ:PL 0/1:218,126:344:99:2883,0,5550 2 113147370 rs202082997 G A 115.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.415;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=5.056;MLEAC=1;MLEAF=0.5;MQ=25.66;MQRankSum=-4.478;QD=2.57;ReadPosRankSum=2.009;SOR=2.027 GT:AD:DP:GQ:PL 0/1:35,10:45:99:144,0,912 2 113191010 rs13021601 A C 2988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.447;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.48;MQRankSum=-0.141;QD=12.3;ReadPosRankSum=0.25;SOR=0.679 GT:AD:DP:GQ:PL 0/1:117,126:243:99:3017,0,2500 2 113258916 rs17846193 C T 439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.5;MQ=47.92;MQRankSum=-3.792;QD=5.94;ReadPosRankSum=-1.032;SOR=1.186 GT:AD:DP:GQ:PL 0/1:51,23:74:99:468,0,1398 2 113305150 rs11123139 G C 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.71;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.195;SOR=0.608 GT:AD:DP:GQ:PL 0/1:82,66:148:99:1817,0,2167 2 113308516 rs2304555 T A 3646.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3675,378,0 2 113309473 rs1545133 C T 1414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=0.552;SOR=0.64 GT:AD:DP:GQ:PL 0/1:56,61:117:99:1443,0,1375 2 113346480 rs41278942 G A 708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.517;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.62;ReadPosRankSum=-0.679;SOR=0.51 GT:AD:DP:GQ:PL 0/1:56,37:93:99:737,0,1156 2 113498566 rs3811040 A G 1678.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1707,165,0 2 113513825 rs6731822 T C 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4590,443,0 2 113671378 rs3811046 G T 1505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.82;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=0.542;SOR=0.598 GT:AD:DP:GQ:PL 0/1:73,69:142:99:1534,0,1767 2 113671410 rs3811047 A G 1430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=1.027;SOR=0.607 GT:AD:DP:GQ:PL 0/1:66,71:137:99:1459,0,1530 2 113674709 rs2708943 C G 1125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.846;SOR=0.943 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1154,0,1289 2 113674721 rs2723183 A G 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=1.892;SOR=0.778 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1253,0,1240 2 113675269 rs2723187 C T 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.464;SOR=0.935 GT:AD:DP:GQ:PL 0/1:73,52:125:99:1195,0,1834 2 113676219 rs2708947 T C 2581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-1.048;SOR=0.975 GT:AD:DP:GQ:PL 0/1:111,106:217:99:2610,0,2721 2 113676381 rs2723192 G A 2022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.778;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.55;ReadPosRankSum=1.292;SOR=0.526 GT:AD:DP:GQ:PL 0/1:56,83:139:99:2051,0,1532 2 113763463 rs2305152 A C 1081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=1.729;SOR=0.399 GT:AD:DP:GQ:PL 0/1:35,41:76:99:1110,0,960 2 113763575 rs895497 A G 3136.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3165,308,0 2 113832312 rs6761276 T C 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.592;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=0.824;SOR=0.641 GT:AD:DP:GQ:PL 0/1:64,78:142:99:1949,0,1492 2 113832333 rs6743376 C A 1890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.503;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=2.025;SOR=0.902 GT:AD:DP:GQ:PL 0/1:84,82:166:99:1919,0,1919 2 113875584 rs2234679 G C 479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.294;SOR=0.467 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,15:40:99:0|1:113875565_A_G:508,0,976 2 113877713 rs878972 A C 1032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.665;SOR=0.687 GT:AD:DP:GQ:PL 0/1:36,47:83:99:1061,0,839 2 113887207 rs419598 T C 885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=1.483;SOR=0.728 GT:AD:DP:GQ:PL 0/1:36,39:75:99:914,0,891 2 113940681 rs3748914 T C 4128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.991;SOR=0.618 GT:AD:DP:GQ:PL 0/1:156,172:328:99:4157,0,3801 2 113940839 rs4849167 G C 2948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.179;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.333;SOR=0.875 GT:AD:DP:GQ:PL 0/1:125,113:238:99:2977,0,3295 2 113943470 rs2241976 A G 3153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.667;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=1.882;SOR=0.766 GT:AD:DP:GQ:PL 0/1:172,129:301:99:3182,0,4423 2 113956371 rs2276561 G C 2905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.937;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.134;SOR=0.662 GT:AD:DP:GQ:PL 0/1:133,118:253:99:2934,0,3130 2 113956821 rs2305133 C G 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.058;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.815;SOR=0.877 GT:AD:DP:GQ:PL 0/1:78,48:126:99:1314,0,2373 2 114257002 rs146797201 C G 11076.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.474;ClippingRankSum=0;DB;DP=861;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=59.55;MQRankSum=-1.814;QD=12.87;ReadPosRankSum=-0.55;SOR=0.664 GT:AD:DP:GQ:PL 0/1:439,422:861:99:11105,0,11470 2 116497479 rs1550854 A G 4074.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4103,396,0 2 116510817 rs2053724 G C 4018.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4047,412,0 2 116525960 rs1446495 G A 4117.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.2;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4146,437,0 2 116599927 rs272009 T C 3842.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3871,390,0 2 118575215 rs1052637 C G 4082.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.74;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,121:121:99:4111,362,0 2 118704478 rs7580124 T G 2302.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2331,228,0 2 118706879 rs1035598 A G 1795.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1824,192,0 2 118731573 rs748767 G A 810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-1.489;SOR=0.675 GT:AD:DP:GQ:PL 0/1:29,37:66:99:839,0,761 2 118753097 rs17584619 C T 529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=0.361;QD=8.15;ReadPosRankSum=0.614;SOR=0.503 GT:AD:DP:GQ:PL 0/1:40,25:65:99:558,0,933 2 119915249 rs7556873 T C 7520.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7549,729,0 2 120012412 rs41279770 C T 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.741;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.4;SOR=0.852 GT:AD:DP:GQ:PL 0/1:110,123:233:99:2869,0,2849 2 120015164 rs111712266 A G 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.199;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.66;ReadPosRankSum=-0.834;SOR=0.646 GT:AD:DP:GQ:PL 0/1:36,41:77:99:1234,0,1008 2 120069281 rs112925717 T TA 436.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.798;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.46;ReadPosRankSum=0.375;SOR=1.032 GT:AD:DP:GQ:PL 0/1:54,26:108:99:474,0,1193 2 120125029 rs2084202 A G 8567.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8596,803,0 2 120194651 rs3217464 A AGTGTGC 10658.7 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=45.94;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,232:232:99:10696,719,0 2 120199140 rs1126839 A G 3156.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3185,318,0 2 120303820 rs2579624 A T 2299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.582;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=1.155;SOR=0.656 GT:AD:DP:GQ:PL 0/1:85,102:187:99:2328,0,1708 2 120317621 . CTT C 169.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.972;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.79;ReadPosRankSum=-1.149;SOR=0.466 GT:AD:DP:GQ:PL 0/1:17,8:50:99:207,0,680 2 120369300 rs10864986 T C 3539.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3568,375,0 2 120383138 rs77292092 CATT C 1566.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.49;ReadPosRankSum=1.203;SOR=0.712 GT:AD:DP:GQ:PL 0/1:53,42:95:99:1604,0,2569 2 120388412 rs2272058 G A 5106.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5135,542,0 2 120404629 . ATT A,AT 1866.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DP=126;ExcessHet=3.0103;FS=4.757;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.17;MQRankSum=0.477;QD=17.28;ReadPosRankSum=0.048;SOR=0.257 GT:AD:DP:GQ:PL 1/2:10,19,79:108:99:1904,1448,1895,184,0,127 2 120438523 rs13011768 A G 7813.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7842,788,0 2 120438696 rs939777 A G 7631.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.18;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7660,691,0 2 120439230 rs1983406 C G 6414.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6443,600,0 2 120704164 rs3214717 A AT 2932.73 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.44;SOR=0.818 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,66:66:99:1|1:120704164_A_AT:2970,199,0 2 120704166 rs2289580 G T 2941.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.57;SOR=0.818 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,66:66:99:1|1:120704164_A_AT:2970,199,0 2 120714401 . C CT 271.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.029;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.752;QD=6.63;ReadPosRankSum=0.465;SOR=0.968 GT:AD:DP:GQ:PL 0/1:20,21:59:99:309,0,442 2 120830815 rs3738970 A G 1695.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1724,171,0 2 120885310 rs1034489 G A 3704.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.86;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3733,399,0 2 120980428 rs11550347 G C 8771.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8800,834,0 2 121713022 rs6718382 C G 4968.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.83;SOR=1.14 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,116:116:99:1|1:121713022_C_G:4997,349,0 2 121726447 rs2592595 G A 4884.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4913,486,0 2 121746956 rs3738880 G T 2528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.103;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=6.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.92;SOR=0.728 GT:AD:DP:GQ:PL 0/1:93,96:189:99:2557,0,2371 2 121747406 rs12711538 G A 3299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.669;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.07;ReadPosRankSum=-0.471;SOR=0.923 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,88:173:99:0|1:121747406_G_A:3328,0,4428 2 121747429 rs10167980 A G 3279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.678;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=6.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.52;ReadPosRankSum=0.175;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,89:168:99:0|1:121747406_G_A:3308,0,4233 2 121989489 rs2304667 G A 6268.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6297,625,0 2 122206690 rs202067173 G A 818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.139;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-1.969;SOR=0.484 GT:AD:DP:GQ:PL 0/1:46,42:88:99:847,0,1299 2 125192068 rs1425745 T C 2506.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.31 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2535,239,0 2 127453664 rs1050967 A C 4003.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4032,393,0 2 127816632 rs2276579 G A 3500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.938;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.197;SOR=0.757 GT:AD:DP:GQ:PL 0/1:196,150:346:99:3529,0,4895 2 127821499 rs72481904 T C 2346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-1.997;SOR=0.614 GT:AD:DP:GQ:PL 0/1:115,106:221:99:2375,0,2637 2 127826533 rs1060743 A G 2021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.872;SOR=0.596 GT:AD:DP:GQ:PL 0/1:75,89:166:99:2050,0,1740 2 127956991 rs34225806 G A 2352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.015;SOR=0.689 GT:AD:DP:GQ:PL 0/1:116,105:221:99:2381,0,2880 2 128331645 rs76746601 C A 2375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.397;SOR=0.847 GT:AD:DP:GQ:PL 0/1:128,103:231:99:2404,0,3319 2 128339456 rs4662740 G T 2349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=1.352;SOR=0.679 GT:AD:DP:GQ:PL 0/1:131,107:238:99:2378,0,3254 2 128345960 rs10928773 T C 1045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.412;SOR=0.648 GT:AD:DP:GQ:PL 0/1:62,47:109:99:1074,0,1664 2 128351153 rs373171375 C A 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=0.352;SOR=0.759 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1169,0,1623 2 128367092 rs777432 G A 1555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-2.755;SOR=0.568 GT:AD:DP:GQ:PL 0/1:100,69:169:99:1584,0,2515 2 128379615 rs201359831 G A 2624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=1.447;SOR=0.722 GT:AD:DP:GQ:PL 0/1:135,116:251:99:2653,0,3294 2 128381808 rs13422424 C T 2480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.414;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.7;SOR=0.791 GT:AD:DP:GQ:PL 0/1:117,102:219:99:2509,0,2806 2 128384744 rs6732660 G A 2691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=4.364;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-1.292;SOR=0.803 GT:AD:DP:GQ:PL 0/1:127,111:238:99:2720,0,3289 2 128386120 rs72493815 TGGGTG T 2380.73 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.09;SOR=8.015 GT:AD:DP:GQ:PL 1/1:0,54:54:99:2418,164,0 2 128389343 rs10208043 C T 6476.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6505,677,0 2 128393289 rs2255177 T C 3998.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=1.448 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4027,381,0 2 128394875 rs59579995 C CA 3233.73 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=43.7;SOR=1.061 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,74:74:99:1|1:128394875_C_CA:3271,223,0 2 128394877 rs56272236 C T 3242.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.04;SOR=1.002 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,72:72:99:1|1:128394875_C_CA:3271,223,0 2 128459214 rs10206957 C G 2684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.018;SOR=0.522 GT:AD:DP:GQ:PL 0/1:122,114:236:99:2713,0,3292 2 128476884 rs116673021 C T 2516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.166;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=7.676;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0;QD=11.82;ReadPosRankSum=-1.541;SOR=0.907 GT:AD:DP:GQ:PL 0/1:109,104:213:99:2545,0,2289 2 128495645 rs6754215 G A 548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.364;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=11.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.22;ReadPosRankSum=-1.955;SOR=2.211 GT:AD:DP:GQ:PL 0/1:54,22:76:99:577,0,1372 2 128526579 rs72147112 TTAAA T,TTAAATAAA 1471.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.233;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.16;MQRankSum=0.32;QD=36.79;ReadPosRankSum=-0.312;SOR=0.464 GT:AD:DP:GQ:PL 1/2:1,19,20:40:99:1509,736,823,737,0,728 2 128608271 rs34858843 GA G 592.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.223;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.7;ReadPosRankSum=-0.604;SOR=0.551 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,17:24:99:0|1:128608271_GA_G:630,0,306 2 128699750 rs2304519 G C 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.49;ReadPosRankSum=-0.282;SOR=0.451 GT:AD:DP:GQ:PL 0/1:31,50:81:99:1445,0,886 2 128870808 rs4662775 T C 3860.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.72;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3889,354,0 2 128878014 rs4662594 G A 3021.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=1.313 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3050,288,0 2 128934400 rs2290111 T C 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=5.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-1.125;SOR=0.333 GT:AD:DP:GQ:PL 0/1:50,67:117:99:1606,0,1180 2 128939799 rs17178720 C T 1589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=-0.713;SOR=0.693 GT:AD:DP:GQ:PL 0/1:111,79:190:99:1618,0,2716 2 128939817 rs1699 G A 1769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-1.13;SOR=0.623 GT:AD:DP:GQ:PL 0/1:110,83:193:99:1798,0,2820 2 129026227 rs3958533 G T 1271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.716;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=3.912;MLEAC=1;MLEAF=0.5;MQ=43.81;MQRankSum=-5.696;QD=5.43;ReadPosRankSum=2.755;SOR=0.478 GT:AD:DP:GQ:PL 0/1:155,79:234:99:1300,0,4173 2 129075877 rs200979099 G T 382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.175;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=7.6;MLEAC=1;MLEAF=0.5;MQ=43.56;MQRankSum=-6.121;QD=2.44;ReadPosRankSum=2.905;SOR=0.947 GT:AD:DP:GQ:PL 0/1:123,34:157:99:411,0,3428 2 129075961 rs61732881 T C 1582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.52;MLEAC=1;MLEAF=0.5;MQ=53.31;MQRankSum=-11.403;QD=8.99;ReadPosRankSum=1.197;SOR=0.478 GT:AD:DP:GQ:PL 0/1:102,74:176:99:1611,0,2379 2 130738163 rs144773989 G A 3062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=47.51;MQRankSum=0.823;QD=11.56;ReadPosRankSum=-1.571;SOR=0.723 GT:AD:DP:GQ:PL 0/1:128,137:265:99:3091,0,3089 2 130832042 . G A 351.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.092;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=54.582;MLEAC=1;MLEAF=0.5;MQ=24.08;MQRankSum=-1.153;QD=5.41;ReadPosRankSum=-0.77;SOR=6.09 GT:AD:DP:GQ:PL 0/1:45,20:65:99:380,0,1104 2 130832185 rs202181461 G A 4912.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=3.641;MLEAC=2;MLEAF=1;MQ=37.96;MQRankSum=1.585;QD=27.14;ReadPosRankSum=-0.376;SOR=0.291 GT:AD:DP:GQ:PL 1/1:7,174:181:99:4941,305,0 2 130832292 rs75775141 T A 7204.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.49;ClippingRankSum=0;DB;DP=390;ExcessHet=3.0103;FS=48.785;MLEAC=1;MLEAF=0.5;MQ=38.79;MQRankSum=-2.995;QD=18.47;ReadPosRankSum=4.798;SOR=0.691 GT:AD:DP:GQ:PL 0/1:62,328:390:99:7233,0,723 2 130832358 rs201946437 T C 1367.77 SNP_FS_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.719;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=141.874;MLEAC=1;MLEAF=0.5;MQ=38.99;MQRankSum=-10.025;QD=6.77;ReadPosRankSum=-5.615;SOR=4.034 GT:AD:DP:GQ:PL 0/1:136,66:202:99:1396,0,3420 2 130832444 rs2599794 C A 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=20.583;MLEAC=1;MLEAF=0.5;MQ=49.96;MQRankSum=-9.542;QD=5.42;ReadPosRankSum=-2.025;SOR=1.654 GT:AD:DP:GQ:PL 0/1:231,85:316:99:1741,0,6217 2 130832531 rs2122977 A G 2294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.963;ClippingRankSum=0;DB;DP=453;ExcessHet=3.0103;FS=22.808;MLEAC=1;MLEAF=0.5;MQ=55.5;MQRankSum=-4.35;QD=5.08;ReadPosRankSum=-0.603;SOR=1.979 GT:AD:DP:GQ:PL 0/1:338,114:452:99:2323,0,8723 2 130832873 rs201958629 G A 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-7.932;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=2.16;MLEAC=1;MLEAF=0.5;MQ=40.26;MQRankSum=-5.636;QD=2.48;ReadPosRankSum=6.423;SOR=0.523 GT:AD:DP:GQ:PL 0/1:390,113:503:99:1276,0,10388 2 130832927 rs201630632 A G 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.608;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=14.551;MLEAC=1;MLEAF=0.5;MQ=43.4;MQRankSum=-9.272;QD=2.25;ReadPosRankSum=2.047;SOR=0.459 GT:AD:DP:GQ:PL 0/1:289,55:344:99:803,0,7585 2 130833159 rs200326162 G A 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.5;MQ=43.57;MQRankSum=-2.449;QD=11.26;ReadPosRankSum=1.015;SOR=0.59 GT:AD:DP:GQ:PL 0/1:97,93:190:99:2168,0,2426 2 130869609 rs62163064 A G 81.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.874;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=4.411;MLEAC=1;MLEAF=0.5;MQ=53.93;MQRankSum=-6.153;QD=0.68;ReadPosRankSum=1.122;SOR=1.385 GT:AD:DP:GQ:PL 0/1:108,12:120:99:110,0,2838 2 130872767 rs200357682 T C 311.77 SNP_QD_filter;SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.888;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=61.763;MLEAC=1;MLEAF=0.5;MQ=33.63;MQRankSum=-7.9;QD=1.41;ReadPosRankSum=-3.641;SOR=6.184 GT:AD:DP:GQ:PGT:PID:PL 0/1:200,21:221:99:0|1:130872761_T_C:340,0,11494 2 130872772 rs199735440 T G 394.77 SNP_QD_filter;SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.312;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=65.081;MLEAC=1;MLEAF=0.5;MQ=34.28;MQRankSum=-6.492;QD=1.8;ReadPosRankSum=-3.969;SOR=6.436 GT:AD:DP:GQ:PGT:PID:PL 0/1:194,25:219:99:0|1:130872761_T_C:423,0,11265 2 130872791 rs200596208 A G 778.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=12.718;MLEAC=1;MLEAF=0.5;MQ=36.49;MQRankSum=-6.46;QD=2.79;ReadPosRankSum=-3.103;SOR=1.455 GT:AD:DP:GQ:PL 0/1:221,58:279:99:807,0,5685 2 130877752 rs77273091 T C 5308.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0;DB;DP=553;ExcessHet=3.0103;FS=9.412;MLEAC=1;MLEAF=0.5;MQ=51.33;MQRankSum=-21.744;QD=9.62;ReadPosRankSum=1.801;SOR=1.059 GT:AD:DP:GQ:PL 0/1:313,239:552:99:5337,0,8136 2 130897218 rs13006246 T C 3623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.728;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.541;QD=10.47;ReadPosRankSum=2.106;SOR=0.764 GT:AD:DP:GQ:PL 0/1:194,152:346:99:3652,0,4605 2 130899804 rs138331089 T C 2740.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.04;QD=34.26;SOR=1.552 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2769,241,0 2 130949411 rs10208844 G T 7477.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.38;QD=30.27;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7506,740,0 2 130949491 rs60154251 G A 3224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.574;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=9.292;MLEAC=1;MLEAF=0.5;MQ=48.87;MQRankSum=-8.96;QD=9.68;ReadPosRankSum=-2.933;SOR=1.108 GT:AD:DP:GQ:PL 0/1:195,138:333:99:3253,0,4860 2 130949553 rs1052422 A G 3431.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.033;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.96;MQRankSum=-17.603;QD=8.54;ReadPosRankSum=2.783;SOR=0.689 GT:AD:DP:GQ:PL 0/1:266,136:402:99:3460,0,7058 2 130951548 rs1052319 G A 20621.8 PASS AC=2;AF=1;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.86;QD=43.51;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,474:474:99:1|1:130951548_G_A:20650,1444,0 2 130951566 rs7340193 G A 22381.8 PASS AC=2;AF=1;AN=2;DB;DP=519;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.05;QD=43.21;SOR=0.709 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,518:518:99:1|1:130951548_G_A:22410,1575,0 2 130951581 rs1052312 A G 9723.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.37;ClippingRankSum=0;DB;DP=550;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=57.3;MQRankSum=-14.616;QD=17.71;ReadPosRankSum=-1.297;SOR=0.648 GT:AD:DP:GQ:PGT:PID:PL 0/1:292,257:549:99:0|1:130951581_A_G:9752,0,11479 2 130951584 rs7340507 T C 9711.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0;DB;DP=546;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=57.28;MQRankSum=-14.695;QD=17.82;ReadPosRankSum=-1.047;SOR=0.608 GT:AD:DP:GQ:PGT:PID:PL 0/1:291,254:545:99:0|1:130951581_A_G:9740,0,11414 2 130951754 rs13000249 G T 3263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.817;ClippingRankSum=0;DB;DP=467;ExcessHet=3.0103;FS=6.446;MLEAC=1;MLEAF=0.5;MQ=49.61;MQRankSum=-1.796;QD=7;ReadPosRankSum=1.747;SOR=1.146 GT:AD:DP:GQ:PL 0/1:314,152:466:99:3292,0,8146 2 130951848 rs2259488 T C 544.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.388;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=14.551;MLEAC=1;MLEAF=0.5;MQ=50.06;MQRankSum=-11.195;QD=1.61;ReadPosRankSum=-1.634;SOR=1.29 GT:AD:DP:GQ:PL 0/1:294,44:338:99:573,0,7574 2 130951949 rs62165074 G A 1763.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51;MQRankSum=-14.159;QD=5.14;ReadPosRankSum=3.506;SOR=0.685 GT:AD:DP:GQ:PL 0/1:241,102:343:99:1792,0,6207 2 130952038 rs13000721 G A 705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.5;MQ=53.65;MQRankSum=-12.264;QD=3.02;ReadPosRankSum=-5.861;SOR=0.958 GT:AD:DP:GQ:PL 0/1:183,51:234:99:734,0,4793 2 130952053 rs2463340 G C 354.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.41;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=13.818;MLEAC=1;MLEAF=0.5;MQ=55.74;MQRankSum=-11.508;QD=1.8;ReadPosRankSum=-0.601;SOR=1.913 GT:AD:DP:GQ:PL 0/1:166,31:197:99:383,0,4264 2 130952718 rs3853852 G A 5411.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.235;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=51.28;MQRankSum=-17.906;QD=14.13;ReadPosRankSum=-0.297;SOR=0.648 GT:AD:DP:GQ:PGT:PID:PL 0/1:235,148:383:99:0|1:130952718_G_A:5440,0,11055 2 130952725 rs3863907 C T 5488.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.068;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=2.22;MLEAC=1;MLEAF=0.5;MQ=51.65;MQRankSum=-18.218;QD=14.48;ReadPosRankSum=-1.169;SOR=0.587 GT:AD:DP:GQ:PGT:PID:PL 0/1:229,150:379:99:0|1:130952718_G_A:5517,0,10950 2 131100496 rs11542416 G A 910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.698;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=-1.271;SOR=0.641 GT:AD:DP:GQ:PL 0/1:69,38:107:99:939,0,1868 2 131100734 rs11542411 G A 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.368;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.163;SOR=0.583 GT:AD:DP:GQ:PL 0/1:54,55:109:99:1417,0,1509 2 131129928 rs112040677 AGACGGG A 5386.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.116;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.969;QD=16.52;ReadPosRankSum=0.35;SOR=0.506 GT:AD:DP:GQ:PL 0/1:183,143:326:99:5424,0,8801 2 131220502 . C T 30.74 SNP_MQ_filter AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24;QD=15.37;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 2 131220830 . C T 556.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.54;QD=42.83;SOR=5.283 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,13:13:39:1|1:131220830_C_T:585,39,0 2 131220831 rs201878083 A G 556.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.54;QD=42.83;SOR=5.283 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,13:13:39:1|1:131220830_C_T:585,39,0 2 131221102 rs139258542 T C 5339.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.64;QD=30.34;SOR=2.873 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5368,529,0 2 131221170 rs144934754 C T 5357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0;DB;DP=546;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=41.63;MQRankSum=-4.213;QD=9.81;ReadPosRankSum=-1.516;SOR=0.863 GT:AD:DP:GQ:PL 0/1:285,261:546:99:5386,0,6268 2 131221445 rs201589859 G A 1303.94 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=43.888;MLEAC=1;MLEAF=0.5;MQ=35.19;MQRankSum=2.457;QD=28.35;ReadPosRankSum=-0.742;SOR=4.555 GT:AD:DP:GQ:PL 0/1:5,41:46:14:1332,0,14 2 131221499 . G A 202.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.06;ClippingRankSum=-0;DP=14;ExcessHet=3.0103;FS=33.015;MLEAC=1;MLEAF=0.5;MQ=25.68;MQRankSum=-0.727;QD=14.48;ReadPosRankSum=-1.86;SOR=4.605 GT:AD:DP:GQ:PL 0/1:5,9:14:99:231,0,111 2 131221622 rs201809436 C T 291.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.554;ClippingRankSum=0;DB;DP=20;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.5;MQ=32.69;MQRankSum=2.703;QD=14.59;ReadPosRankSum=-2.979;SOR=0.055 GT:AD:DP:GQ:PL 0/1:6,14:20:99:320,0,117 2 131232011 rs202069604 C T 342.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.282;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=18.097;MLEAC=1;MLEAF=0.5;MQ=26.79;MQRankSum=-0.264;QD=11.06;ReadPosRankSum=-0.187;SOR=4.047 GT:AD:DP:GQ:PL 0/1:16,15:31:99:371,0,385 2 131245713 rs201745094 C G 862.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.69;QD=30.81;SOR=6.736 GT:AD:DP:GQ:PL 1/1:0,28:28:84:891,84,0 2 131256647 . G A 30.74 SNP_MQ_filter AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25;QD=15.37;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:58,6,0 2 131256794 . T C 286.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.683;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.94;MQRankSum=-4.762;QD=11.95;ReadPosRankSum=-0.253;SOR=0.859 GT:AD:DP:GQ:PL 0/1:11,13:24:99:315,0,277 2 131369168 rs201816861 G A 73.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.69;MQRankSum=-3.116;QD=0.65;ReadPosRankSum=0.895;SOR=0.318 GT:AD:DP:GQ:PL 0/1:100,14:114:99:102,0,3326 2 131377707 rs201225245 A G 1161.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.51;QD=31.4;SOR=7.276 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1190,111,0 2 131414176 rs62165276 C T 5894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.931;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.38;MQRankSum=-3.727;QD=16.89;ReadPosRankSum=0.695;SOR=0.68 GT:AD:DP:GQ:PL 0/1:108,241:349:99:5923,0,2423 2 131414394 rs200109207 C T 1099.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.095;ClippingRankSum=0;DB;DP=357;ExcessHet=3.0103;FS=79.952;MLEAC=1;MLEAF=0.5;MQ=44.2;MQRankSum=-11.122;QD=3.08;ReadPosRankSum=-3.354;SOR=3.354 GT:AD:DP:GQ:PL 0/1:290,67:357:99:1128,0,7305 2 131414737 . A G 449.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.894;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=56.279;MLEAC=1;MLEAF=0.5;MQ=32.6;MQRankSum=-8.241;QD=3.17;ReadPosRankSum=-2.084;SOR=2.702 GT:AD:DP:GQ:PL 0/1:115,27:142:99:478,0,3207 2 131414975 . A T 659.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.576;ClippingRankSum=0;DP=359;ExcessHet=3.0103;FS=44.488;MLEAC=1;MLEAF=0.5;MQ=45.49;MQRankSum=-12.279;QD=1.84;ReadPosRankSum=0.894;SOR=2.134 GT:AD:DP:GQ:PL 0/1:293,66:359:99:688,0,7041 2 131415008 . T C 403.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.685;ClippingRankSum=0;DP=374;ExcessHet=3.0103;FS=83.809;MLEAC=1;MLEAF=0.5;MQ=48.36;MQRankSum=-11.618;QD=1.09;ReadPosRankSum=-1.722;SOR=4.255 GT:AD:DP:GQ:PL 0/1:317,54:371:99:432,0,7646 2 131487673 rs272128 A C 5577.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5606,556,0 2 131520178 rs77687733 C G 4362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.96;ClippingRankSum=0;DB;DP=374;ExcessHet=3.0103;FS=0.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=4.25;SOR=0.718 GT:AD:DP:GQ:PL 0/1:172,197:369:99:4391,0,4431 2 131520663 rs1905235 T C 9828.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9857,933,0 2 131672101 rs6752575 T C 3155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=8.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-1.217;SOR=0.56 GT:AD:DP:GQ:PL 0/1:136,134:270:99:3184,0,3526 2 131672206 . C G 2826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.736;SOR=0.71 GT:AD:DP:GQ:PL 0/1:120,115:235:99:2855,0,3151 2 131672271 rs6752724 T C 7957.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7986,765,0 2 131672950 rs12464119 A G 2966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.222;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-0.153;SOR=0.738 GT:AD:DP:GQ:PL 0/1:112,119:231:99:2995,0,2804 2 131673316 rs3739129 C T 3702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.609;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=0.364;SOR=0.738 GT:AD:DP:GQ:PL 0/1:204,154:358:99:3731,0,5051 2 131673702 rs62178867 G A 3711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.07;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-1.389;SOR=0.573 GT:AD:DP:GQ:PL 0/1:169,155:324:99:3740,0,5035 2 131674285 rs3739127 A G 3458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.097;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.91;ReadPosRankSum=0.503;SOR=0.558 GT:AD:DP:GQ:PL 0/1:108,124:232:99:3487,0,2747 2 131688587 rs6718816 G A 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=2.167;SOR=0.823 GT:AD:DP:GQ:PL 0/1:123,98:221:99:2235,0,2934 2 131688783 rs61750360 G A 2712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=0.955;SOR=0.844 GT:AD:DP:GQ:PL 0/1:101,116:217:99:2741,0,2460 2 131976272 rs62177515 G C 15335.8 SNP_MQRankSum_filter AC=2;AF=1;AN=2;BaseQRankSum=4.819;ClippingRankSum=0;DB;DP=559;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.06;MQRankSum=-13.933;QD=27.48;ReadPosRankSum=12.666;SOR=0.699 GT:AD:DP:GQ:PL 1/1:83,475:558:99:15364,1228,0 2 131984410 rs62177519 A G 3174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=0.8;MLEAC=1;MLEAF=0.5;MQ=51.87;MQRankSum=2.286;QD=8.58;ReadPosRankSum=-1.758;SOR=0.758 GT:AD:DP:GQ:PL 0/1:216,154:370:99:3203,0,5006 2 132021023 rs201534564 G A 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.782;ClippingRankSum=0;DB;DP=440;ExcessHet=3.0103;FS=4.049;MLEAC=1;MLEAF=0.5;MQ=43.17;MQRankSum=-7.931;QD=3.48;ReadPosRankSum=0.289;SOR=1.039 GT:AD:DP:GQ:PL 0/1:335,104:439:99:1558,0,8637 2 132021404 rs201570000 C T 4979.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.763;ClippingRankSum=0;DB;DP=914;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.5;MQ=46.37;MQRankSum=-19.887;QD=5.47;ReadPosRankSum=2.495;SOR=0.693 GT:AD:DP:GQ:PL 0/1:629,282:914:99:5008,0,15860 2 132021475 rs11546936 G A 3711.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.598;ClippingRankSum=0;DB;DP=840;ExcessHet=3.0103;FS=7.036;MLEAC=1;MLEAF=0.5;MQ=49.49;MQRankSum=-22.134;QD=4.42;ReadPosRankSum=-1.595;SOR=1.172 GT:AD:DP:GQ:PL 0/1:612,227:839:99:3740,0,15816 2 132021547 rs7425410 C T 430.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.181;ClippingRankSum=0;DB;DP=555;ExcessHet=3.0103;FS=17.031;MLEAC=1;MLEAF=0.5;MQ=57.19;MQRankSum=-16.043;QD=0.78;ReadPosRankSum=-2.266;SOR=2.405 GT:AD:DP:GQ:PL 0/1:506,49:555:99:459,0,14190 2 132021815 rs369764537 G A 1771.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.718;ClippingRankSum=0;DB;DP=1357;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.5;MQ=43.5;MQRankSum=-8.305;QD=1.31;ReadPosRankSum=1.003;SOR=0.915 GT:AD:DP:GQ:PL 0/1:1130,227:1357:99:1800,0,27111 2 132021857 rs202106518 C T 1735.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0;DB;DP=1096;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.7;MQRankSum=-3.834;QD=1.58;ReadPosRankSum=-2.707;SOR=0.634 GT:AD:DP:GQ:PL 0/1:915,181:1096:99:1764,0,26378 2 132021863 rs374590805 C G 4173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.719;ClippingRankSum=0;DB;DP=1042;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.5;MQ=41.37;MQRankSum=2.2;QD=4.02;ReadPosRankSum=1.173;SOR=0.791 GT:AD:DP:GQ:PL 0/1:795,242:1039:99:4202,0,22366 2 132021908 rs201238743 G A 1702.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.618;ClippingRankSum=0;DB;DP=521;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=38.68;MQRankSum=-1.249;QD=3.27;ReadPosRankSum=2.758;SOR=0.87 GT:AD:DP:GQ:PL 0/1:410,111:521:99:1731,0,11604 2 132021946 . G A 1138.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.267;ClippingRankSum=0;DP=311;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.5;MQ=32.47;MQRankSum=-0.886;QD=3.66;ReadPosRankSum=1.675;SOR=0.829 GT:AD:DP:GQ:PL 0/1:243,68:311:99:1167,0,6868 2 132022031 . C T 702.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.735;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.04;MQRankSum=-1.142;QD=5.91;ReadPosRankSum=1.977;SOR=0.585 GT:AD:DP:GQ:PL 0/1:83,36:119:99:731,0,2135 2 132237927 rs200147665 C A 1008.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0;DB;DP=507;ExcessHet=3.0103;FS=10.28;MLEAC=1;MLEAF=0.5;MQ=46.98;MQRankSum=-7.516;QD=1.99;ReadPosRankSum=-2.553;SOR=1.549 GT:AD:DP:GQ:PL 0/1:418,89:507:99:1037,0,12105 2 132237983 rs71347110 A G 3320.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=468;ExcessHet=3.0103;FS=6.648;MLEAC=1;MLEAF=0.5;MQ=51.35;MQRankSum=-16.197;QD=7.11;ReadPosRankSum=-0.543;SOR=1.176 GT:AD:DP:GQ:PL 0/1:321,146:467:99:3349,0,8664 2 132249600 rs2272357 G A 4048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.796;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=9.674;MLEAC=1;MLEAF=0.5;MQ=51.9;MQRankSum=-1.039;QD=17.84;ReadPosRankSum=1.075;SOR=0.342 GT:AD:DP:GQ:PGT:PID:PL 0/1:120,107:227:99:0|1:132249600_G_A:4077,0,6777 2 132249605 rs2272358 G A 4106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=7.449;MLEAC=1;MLEAF=0.5;MQ=52.71;MQRankSum=-1.018;QD=18.33;ReadPosRankSum=0.851;SOR=0.39 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,106:224:99:0|1:132249600_G_A:4135,0,6723 2 132288362 rs201632382 T C 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.733;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=34.752;MLEAC=1;MLEAF=0.5;MQ=47.29;MQRankSum=-12.427;QD=9.47;ReadPosRankSum=-0.279;SOR=2.355 GT:AD:DP:GQ:PL 0/1:130,82:212:99:2035,0,3312 2 132552735 rs200892484 G A 75.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.93;QD=25.09;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:103,9,0 2 133174764 rs2241764 C T 2131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.41;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.047;SOR=0.736 GT:AD:DP:GQ:PL 0/1:104,94:198:99:2160,0,2705 2 133174999 rs2241763 A G 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=2.022;SOR=0.712 GT:AD:DP:GQ:PL 0/1:118,99:217:99:2347,0,2735 2 133489601 rs56284623 A G 2388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.93;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.82;ReadPosRankSum=-1.61;SOR=0.634 GT:AD:DP:GQ:PL 0/1:62,89:151:99:2417,0,1446 2 133539566 rs6730282 G A 1841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=6.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.475;SOR=1.139 GT:AD:DP:GQ:PL 0/1:100,84:184:99:1870,0,2464 2 133541107 rs16841277 T A 2610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.213;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-1.243;SOR=0.696 GT:AD:DP:GQ:PL 0/1:133,109:242:99:2639,0,3048 2 133541444 rs12691829 T C 4315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.62;ReadPosRankSum=0.107;SOR=0.663 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,110:245:99:0|1:133541444_T_C:4344,0,6857 2 133541454 rs12691830 A G 4567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.632;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.79;ReadPosRankSum=-0.207;SOR=0.787 GT:AD:DP:GQ:PGT:PID:PL 0/1:149,123:272:99:0|1:133541444_T_C:4596,0,7070 2 133542014 rs12616282 T C 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.728;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.076;SOR=0.786 GT:AD:DP:GQ:PL 0/1:133,103:236:99:2422,0,3184 2 133542574 rs61995744 C T 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=0.469;SOR=0.735 GT:AD:DP:GQ:PL 0/1:136,95:231:99:2107,0,3488 2 133554288 rs1868076 A G 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.107;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.33;SOR=0.752 GT:AD:DP:GQ:PL 0/1:50,42:92:99:984,0,1124 2 135099144 rs2290047 G A 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=-0.68;SOR=0.869 GT:AD:DP:GQ:PL 0/1:52,31:83:99:711,0,1417 2 135119909 rs148183644 T C 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=5.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.12;SOR=0.681 GT:AD:DP:GQ:PL 0/1:78,88:166:99:2063,0,1794 2 135711516 rs3814355 C T 835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.44;ReadPosRankSum=1.441;SOR=1.009 GT:AD:DP:GQ:PL 0/1:56,43:99:99:864,0,1505 2 135711657 rs3814354 G A 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.121;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.501;SOR=0.546 GT:AD:DP:GQ:PL 0/1:63,64:127:99:1519,0,1672 2 135745129 rs16831235 G A 1635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.172;SOR=0.677 GT:AD:DP:GQ:PL 0/1:86,67:153:99:1664,0,2259 2 136148394 rs202232784 GA G 319.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=8.009;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.915;QD=4.5;ReadPosRankSum=-1.752;SOR=0.758 GT:AD:DP:GQ:PL 0/1:44,27:99:99:357,0,872 2 136546110 rs2278544 A G 2067.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2096,210,0 2 136555659 rs2322659 T C 1670.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1699,168,0 2 136558157 rs748841 C T 2736.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2765,279,0 2 136561557 rs2304371 G A 3779.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3808,386,0 2 136575199 rs6719488 G T 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4590,453,0 2 136575534 rs4954449 T C 5114.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5143,518,0 2 136594158 rs2236783 G A 4235.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.228 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4264,423,0 2 137814477 rs17727482 C G 3238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.223;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=6.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.86;ReadPosRankSum=-0.631;SOR=0.889 GT:AD:DP:GQ:PL 0/1:95,123:218:99:3267,0,2225 2 137814489 rs61748666 T G 2277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.226;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=3.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-1.177;SOR=0.678 GT:AD:DP:GQ:PL 0/1:111,90:201:99:2306,0,2802 2 137852550 rs61741426 G A 2496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.802;SOR=0.757 GT:AD:DP:GQ:PL 0/1:131,115:246:99:2525,0,2920 2 137852698 rs7561482 C T 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.747;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=1.228;SOR=0.686 GT:AD:DP:GQ:PL 0/1:67,69:136:99:1786,0,1571 2 137928320 rs61746979 C T 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-1.956;SOR=0.626 GT:AD:DP:GQ:PL 0/1:81,57:138:99:1350,0,2017 2 138033476 rs201983982 G A 823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.814;SOR=0.722 GT:AD:DP:GQ:PL 0/1:38,36:74:99:852,0,962 2 138163391 rs1551281 T C 3640.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.188 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3669,363,0 2 138375972 rs17692792 A T 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=2.208;SOR=0.651 GT:AD:DP:GQ:PL 0/1:37,54:91:99:1234,0,873 2 138420996 rs10206850 A G 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-1.052;SOR=0.472 GT:AD:DP:GQ:PL 0/1:82,73:155:99:1625,0,2089 2 139429068 rs10803570 G A 2549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=5.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.09;SOR=1.065 GT:AD:DP:GQ:PL 0/1:104,105:209:99:2578,0,2454 2 141116447 rs35546150 G T 1430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.425;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.439;SOR=0.713 GT:AD:DP:GQ:PL 0/1:80,66:146:99:1459,0,1836 2 141267573 rs35821928 G A 2004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.213;SOR=0.666 GT:AD:DP:GQ:PL 0/1:96,86:182:99:2033,0,2306 2 141274576 rs4954672 T C 2250.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.77;QD=30.83;SOR=1.34 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2279,219,0 2 141294285 . G GA 64.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.717;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.8;ReadPosRankSum=0.502;SOR=0.611 GT:AD:DP:GQ:PL 0/1:67,14:99:99:102,0,1423 2 141474402 rs5834770 G GA 1157.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.92;ReadPosRankSum=1.234;SOR=0.836 GT:AD:DP:GQ:PL 1/1:1,42:45:99:1195,109,0 2 141528592 rs7599219 T C 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=1.703;SOR=0.522 GT:AD:DP:GQ:PL 0/1:43,32:75:99:745,0,1135 2 141533662 rs996361 T C 1156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.009;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.614;SOR=0.448 GT:AD:DP:GQ:PL 0/1:52,46:98:99:1185,0,1383 2 141571329 rs3749010 T C 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.277;SOR=0.706 GT:AD:DP:GQ:PL 0/1:50,46:96:99:1005,0,1212 2 141598473 rs35745624 A AT 3983.73 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.04;QD=38.68;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,103:103:99:4021,310,0 2 141598681 rs74787922 A C 759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=-0.275;SOR=0.856 GT:AD:DP:GQ:PL 0/1:21,33:54:99:788,0,477 2 141707868 rs6748626 G T 3561.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3590,380,0 2 141751592 rs13007735 G A 1361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.96;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=1.707;SOR=0.735 GT:AD:DP:GQ:PL 0/1:79,62:141:99:1390,0,1799 2 141816621 rs1525579 A G 2301.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.36;SOR=2.015 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2330,207,0 2 142567910 rs12990449 T C 1752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-1.199;SOR=0.773 GT:AD:DP:GQ:PL 0/1:85,78:163:99:1781,0,1906 2 144193151 rs34314047 C CTT 326.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=1.147;SOR=1.426 GT:AD:DP:GQ:PL 0/1:15,14:40:99:364,0,522 2 144194565 rs17230746 C T 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.096;SOR=0.647 GT:AD:DP:GQ:PL 0/1:59,45:104:99:1032,0,1475 2 148657117 rs1128919 G A 1371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-1.121;QD=12.7;ReadPosRankSum=-2.839;SOR=0.535 GT:AD:DP:GQ:PL 0/1:47,61:108:99:1400,0,1100 2 148701099 rs66919703 GA G 397.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.031;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-1.846;SOR=0.777 GT:AD:DP:GQ:PL 0/1:11,20:42:99:435,0,155 2 148716428 rs2307394 T C 282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.953;ClippingRankSum=0;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.85;ReadPosRankSum=-0.266;SOR=0.892 GT:AD:DP:GQ:PL 0/1:5,10:15:99:311,0,120 2 150069645 rs56171871 C CGT 2395.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.75;ReadPosRankSum=0.149;SOR=0.699 GT:AD:DP:GQ:PL 0/1:68,75:145:99:2433,0,2208 2 150432976 rs11545261 C T 2692.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2721,276,0 2 151328284 rs11338446 GA G 1720.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.56;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.619;MLEAC=2;MLEAF=1;MQ=60.11;MQRankSum=0.263;QD=22.35;ReadPosRankSum=-0.419;SOR=0.188 GT:AD:DP:GQ:PL 1/1:3,74:80:99:1758,174,0 2 152138522 rs3771886 T C 418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.459;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=0.176;SOR=0.54 GT:AD:DP:GQ:PL 0/1:22,20:42:99:447,0,473 2 152139416 rs1048135 G A 392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.61;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.86;ReadPosRankSum=0.497;SOR=0.946 GT:AD:DP:GQ:PL 0/1:31,19:50:99:421,0,829 2 152236045 rs71403164 TA T 412.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.9;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.5;MQ=60.64;MQRankSum=2.189;QD=7.37;ReadPosRankSum=-0.96;SOR=0.543 GT:AD:DP:GQ:PL 0/1:33,23:70:99:450,0,674 2 152293320 . CT C 63.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.35;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.12;ReadPosRankSum=-0.233;SOR=0.366 GT:AD:DP:GQ:PL 0/1:44,13:61:99:101,0,1017 2 152311570 rs2444263 G A 2580.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2609,246,0 2 152314385 rs16830047 G A 1220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.271;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.025;SOR=0.66 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1249,0,1439 2 152320118 rs2123465 G A 4835.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4864,482,0 2 152322095 rs2444257 A T 5007.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5036,507,0 2 152331418 rs1065177 C G 2011.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2040,212,0 2 152346979 rs1061305 T C 2120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-2.343;SOR=0.739 GT:AD:DP:GQ:PL 0/1:111,100:211:99:2149,0,2600 2 152349026 rs2288195 G A 1739.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1768,165,0 2 152352843 rs7575451 C G 5260.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5289,533,0 2 152382454 rs6721666 C G 2419.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2448,249,0 2 152387553 rs4664475 T C 2496.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2525,257,0 2 152388415 rs56026241 AT A 2365.73 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.6;QD=34.79;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2403,205,0 2 152422076 rs2288210 C G 2083.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2112,198,0 2 152422087 rs2288211 A G 730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.487;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.235;SOR=0.895 GT:AD:DP:GQ:PL 0/1:33,32:65:99:759,0,791 2 152424933 rs3214503 T TA 1272.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=5.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.2;ReadPosRankSum=-0.455;SOR=1.467 GT:AD:DP:GQ:PL 0/1:18,56:81:99:1310,0,211 2 152432886 rs61254943 G A 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.143;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.149;SOR=0.659 GT:AD:DP:GQ:PL 0/1:41,37:78:99:917,0,980 2 152435840 rs149322880 C G 825.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.46;QD=30.58;SOR=2.753 GT:AD:DP:GQ:PL 1/1:0,27:27:81:854,81,0 2 152436012 rs199749747 T G 2737.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.808;MLEAC=2;MLEAF=1;MQ=36.1;MQRankSum=1.32;QD=26.07;ReadPosRankSum=0.172;SOR=0.24 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2766,275,0 2 152447845 rs146388415 G GC 3300.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.67;ClippingRankSum=0;DB;DP=464;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.5;MQ=41.96;MQRankSum=-9.5;QD=7.13;ReadPosRankSum=0.517;SOR=0.829 GT:AD:DP:GQ:PL 0/1:345,118:463:99:3338,0,12419 2 152448640 rs200541641 T C 304.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.135;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=27.23;MLEAC=1;MLEAF=0.5;MQ=53.73;MQRankSum=-10.297;QD=0.85;ReadPosRankSum=-3.86;SOR=2.281 GT:AD:DP:GQ:PL 0/1:315,45:360:99:333,0,7726 2 152459116 . G A 101.03 SNP_MQ_filter AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.02;QD=25.26;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:129,12,0 2 152473986 . CA C 118.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.372;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=5.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.16;ReadPosRankSum=-0.097;SOR=1.219 GT:AD:DP:GQ:PL 0/1:14,9:36:99:156,0,288 2 152476028 rs10172023 C G 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.777;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.235;SOR=0.615 GT:AD:DP:GQ:PL 0/1:89,66:155:99:1733,0,2486 2 152490219 rs6709886 A G 3280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-1.881;QD=11.08;ReadPosRankSum=0.001;SOR=0.699 GT:AD:DP:GQ:PL 0/1:160,136:296:99:3309,0,4145 2 152490458 rs6710212 A G 6426.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.506 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6455,606,0 2 152496526 rs6713162 A G 1450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.524;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=0.24;SOR=0.626 GT:AD:DP:GQ:PL 0/1:87,60:147:99:1479,0,2202 2 152511778 rs10930723 A C 820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.004;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.551;SOR=0.479 GT:AD:DP:GQ:PL 0/1:27,36:63:99:849,0,543 2 152521096 rs10170273 C T 1149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.572;SOR=0.731 GT:AD:DP:GQ:PL 0/1:52,48:100:99:1178,0,1316 2 152527572 rs7426114 C T 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.545;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-2.252;SOR=1.075 GT:AD:DP:GQ:PL 0/1:89,75:164:99:1967,0,2233 2 152527608 rs34577613 C T 2153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-1.045;SOR=0.778 GT:AD:DP:GQ:PL 0/1:97,97:194:99:2182,0,2271 2 152531077 rs6711382 A G 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.048;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-0.121;SOR=0.54 GT:AD:DP:GQ:PL 0/1:49,33:82:99:799,0,1209 2 152531781 rs12618063 C A 325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.722;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.95;ReadPosRankSum=0.646;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,15:41:99:0|1:152531781_C_A:354,0,686 2 152536498 rs6735208 T A 1261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-1.494;SOR=0.65 GT:AD:DP:GQ:PL 0/1:51,52:103:99:1290,0,1284 2 152573981 rs4611637 A G 748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.56;QD=9.85;ReadPosRankSum=-1.154;SOR=0.625 GT:AD:DP:GQ:PL 0/1:41,35:76:99:777,0,1033 2 152684704 rs150910136 A AC 738.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.31;ReadPosRankSum=0.164;SOR=0.749 GT:AD:DP:GQ:PL 0/1:64,37:104:99:776,0,1498 2 152988610 rs5835408 C CT 1545.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.966;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.65;ReadPosRankSum=0.107;SOR=1.101 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1583,125,0 2 153000337 rs12617139 T A 2232.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=1.819 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2261,210,0 2 153192242 rs147562333 C A 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.152;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.968;SOR=0.639 GT:AD:DP:GQ:PL 0/1:70,80:150:99:1768,0,1541 2 153378459 rs4664114 T C 3491.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.37;SOR=0.919 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,96:96:99:1|1:153378459_T_C:3520,291,0 2 153378462 rs138926754 T C 954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-1.218;SOR=0.899 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,44:96:99:0|1:153378459_T_C:983,0,1245 2 153405594 rs1155779 G A 657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.859;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.74;ReadPosRankSum=1.25;SOR=0.752 GT:AD:DP:GQ:PL 0/1:52,33:85:99:686,0,1190 2 153415234 rs200953857 T TG 908.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.399;SOR=0.672 GT:AD:DP:GQ:PL 0/1:44,48:92:99:946,0,1252 2 153415244 rs72868279 T C 3548.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.25;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,84:91:99:3577,295,0 2 153476066 rs5835439 G GCCA 3709.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.09;QD=44.7;SOR=3.509 GT:AD:DP:GQ:PL 1/1:0,83:85:99:3738,236,0 2 153481943 rs2346532 T C 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4315,445,0 2 153520782 rs3762507 A G 864.77 PASS AC=2;AF=1;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.863 GT:AD:DP:GQ:PL 1/1:0,28:28:84:893,84,0 2 155252653 rs13026208 T C 490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=4.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.822;SOR=0.26 GT:AD:DP:GQ:PL 0/1:30,20:50:99:519,0,845 2 155711357 rs17642086 T C 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.1;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.061;SOR=0.793 GT:AD:DP:GQ:PL 0/1:76,69:145:99:1643,0,1868 2 157183211 rs35479735 TC T 3138.73 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.27;SOR=1.481 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3176,268,0 2 157352734 rs55843224 CT C 65.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.6;ReadPosRankSum=-0.538;SOR=1.39 GT:AD:DP:GQ:PL 0/1:32,9:46:99:103,0,745 2 157406249 rs2116665 G A 2772.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2801,285,0 2 157406296 rs2116664 A C 2027.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.24;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2056,183,0 2 158115129 rs61748237 A T 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=0.343;SOR=0.582 GT:AD:DP:GQ:PL 0/1:49,60:109:99:1525,0,1229 2 158140806 rs6759356 G C 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.021;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=9.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=1.488;SOR=1.711 GT:AD:DP:GQ:PL 0/1:41,40:81:99:1084,0,982 2 158157361 rs3214040 C T 1376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=1.213;SOR=0.512 GT:AD:DP:GQ:PL 0/1:50,63:113:99:1405,0,1144 2 158275111 rs5835667 T TA 340.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.249;SOR=0.662 GT:AD:DP:GQ:PL 0/1:13,21:51:99:378,0,239 2 158395079 rs7576514 C G 1384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.187;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=-1.298;SOR=0.864 GT:AD:DP:GQ:PL 0/1:84,62:146:99:1413,0,2041 2 158401137 rs10432556 T C 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.78;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.835;SOR=1.109 GT:AD:DP:GQ:PL 0/1:42,44:86:99:1119,0,935 2 158443889 rs4556933 G A 969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=6.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=2.354;SOR=0.33 GT:AD:DP:GQ:PL 0/1:61,46:107:99:998,0,1592 2 158626980 rs1146031 C T 4405.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.03;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4434,488,0 2 158636910 rs2227861 G A 2702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.75;SOR=0.904 GT:AD:DP:GQ:PL 0/1:118,115:233:99:2731,0,2876 2 159166069 rs7559772 T C 3450.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3479,361,0 2 159195225 rs11686762 T G 746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-0.583;SOR=1.032 GT:AD:DP:GQ:PL 0/1:27,30:57:99:775,0,738 2 159389762 rs35112233 C T 1261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.348;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.672;SOR=0.716 GT:AD:DP:GQ:PL 0/1:63,57:120:99:1290,0,1437 2 159517972 rs143322313 G T 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=0.401;SOR=0.996 GT:AD:DP:GQ:PL 0/1:56,46:102:99:984,0,1277 2 159663616 rs12535 G A 3318.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3347,348,0 2 159954175 rs34588551 C T 2590.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.45 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2619,255,0 2 160019863 rs12466551 A G 4600.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4629,425,0 2 160035195 rs12988603 C T 6275.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6304,642,0 2 160035207 rs6748288 T C 6643.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6672,653,0 2 160075886 rs146371641 G GC 3735.73 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=33.06;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3773,340,0 2 160087535 rs3821301 T G 4032.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4061,410,0 2 160112881 rs7591849 G T 3313.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=1.524 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3342,323,0 2 160114437 rs3213715 G A 2365.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2394,234,0 2 160136337 rs174264 G A 5052.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5081,522,0 2 160176943 rs174229 A C 2219.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2248,210,0 2 160182302 rs415793 C T 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.836;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-1.96;SOR=0.941 GT:AD:DP:GQ:PL 0/1:46,52:98:99:1215,0,1320 2 160304741 rs12470533 A T 3335.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=1.655 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3364,315,0 2 160604812 rs1427329 C T 5247.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5276,504,0 2 160605268 rs1365803 T C 5682.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5711,563,0 2 160639970 rs2114626 T C 3272.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=1.188 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3301,347,0 2 160691978 rs2303548 G A 1607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.428;SOR=0.788 GT:AD:DP:GQ:PL 0/1:93,72:165:99:1636,0,2449 2 160710922 rs2729705 T C 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.234;SOR=0.511 GT:AD:DP:GQ:PL 0/1:108,92:200:99:2183,0,2779 2 160711045 rs3951216 G C 2495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.649;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=3.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.03;ReadPosRankSum=-1.33;SOR=1.038 GT:AD:DP:GQ:PL 0/1:79,87:166:99:2524,0,1943 2 160714990 rs41264213 A G 1876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.614;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=7.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-0.361;SOR=1.265 GT:AD:DP:GQ:PL 0/1:65,75:140:99:1905,0,1454 2 160729005 rs1397706 C T 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.327;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=1.107;SOR=0.814 GT:AD:DP:GQ:PL 0/1:119,96:215:99:2078,0,2708 2 160743040 rs2271381 T A 1384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.017;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-1.308;SOR=0.896 GT:AD:DP:GQ:PL 0/1:55,59:114:99:1413,0,1288 2 160761082 rs6760195 T G 3120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.102;SOR=0.857 GT:AD:DP:GQ:PL 0/1:122,139:261:99:3149,0,2670 2 160833188 rs2715918 A G 1540.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1569,156,0 2 160901517 rs4665143 A G 3618.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3647,354,0 2 160958349 rs201103445 GAA G,GA 1096.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.384;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.13;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=21.93;ReadPosRankSum=-1.127;SOR=1.464 GT:AD:DP:GQ:PL 1/2:4,26,20:50:99:1134,346,443,530,0,497 2 160968628 rs16844790 A G 1423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.489;SOR=0.914 GT:AD:DP:GQ:PL 0/1:40,58:98:99:1452,0,969 2 161174740 rs5835799 TA T 689.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.9;ReadPosRankSum=2.031;SOR=0.346 GT:AD:DP:GQ:PL 0/1:9,24:58:19:527,0,19 2 162091836 rs3754970 T C 934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.628;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=7.832;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.516;SOR=1.62 GT:AD:DP:GQ:PL 0/1:54,35:89:99:963,0,1289 2 162280748 rs890076 G A 6645.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6674,681,0 2 162890175 rs1558957 T C 485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.387;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.238;SOR=0.473 GT:AD:DP:GQ:PL 0/1:26,22:48:99:514,0,614 2 162891848 rs6432708 C T 944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=6.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-1.618;SOR=1.491 GT:AD:DP:GQ:PL 0/1:40,39:79:99:973,0,1115 2 162903410 rs138191868 C T 804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.588;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=0.911;SOR=0.743 GT:AD:DP:GQ:PL 0/1:27,32:59:99:833,0,639 2 162929979 rs17574 A G 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-1.268;SOR=0.619 GT:AD:DP:GQ:PL 0/1:70,65:135:99:1467,0,1614 2 163081036 rs78244369 A G 134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.314;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.64;ReadPosRankSum=1.098;SOR=0.715 GT:AD:DP:GQ:PL 0/1:40,11:51:99:163,0,981 2 163124051 rs1990760 C T 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-1.152;SOR=0.558 GT:AD:DP:GQ:PL 0/1:34,40:74:99:917,0,859 2 163128824 rs3747517 T C 2839.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2868,303,0 2 163208893 rs17783344 T G 624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.954;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.283;SOR=0.617 GT:AD:DP:GQ:PL 0/1:31,25:56:99:653,0,733 2 165353712 rs8192673 C T 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=5.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-1.319;SOR=0.384 GT:AD:DP:GQ:PL 0/1:46,37:83:99:1022,0,1315 2 165476253 rs61748245 A T 2012.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2041,209,0 2 165551404 rs17244632 G A 2194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=-0.583;SOR=0.443 GT:AD:DP:GQ:PL 0/1:71,87:158:99:2223,0,1851 2 165559734 rs72876794 C T 769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=-1.323;SOR=0.815 GT:AD:DP:GQ:PL 0/1:22,34:56:99:798,0,465 2 165578581 rs6414069 A G 4034.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.476 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4063,410,0 2 165586466 rs13392281 T C 1155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.421;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=0.772;SOR=0.779 GT:AD:DP:GQ:PL 0/1:65,50:115:99:1184,0,1467 2 165947005 rs141161490 G A 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.723;SOR=0.898 GT:AD:DP:GQ:PL 0/1:78,57:135:99:1510,0,2178 2 165947079 rs41265137 C A 2759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.088;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.383;SOR=0.516 GT:AD:DP:GQ:PL 0/1:101,115:216:99:2788,0,2509 2 165996107 rs1946892 T A 1618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-1.231;SOR=0.633 GT:AD:DP:GQ:PL 0/1:70,72:142:99:1647,0,1756 2 166170127 rs2121371 T C 3144.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3173,314,0 2 166179650 rs1867864 C T 2871.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.538 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2900,290,0 2 166788336 rs7592429 T C 3450.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3479,345,0 2 166797646 rs1432273 C T 4116.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4145,432,0 2 166892788 rs2298771 C T 3152.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3181,303,0 2 166895913 rs201455607 CTTT C,CT 2609.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.803;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.1;MQRankSum=0.215;QD=37.28;ReadPosRankSum=-0.212;SOR=1.214 GT:AD:DP:GQ:PL 1/2:2,36,32:99:99:2647,708,568,965,0,780 2 166897864 rs6432860 A G 3892.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3921,400,0 2 166897989 rs11394960 G GA 507.87 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.465;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.447;QD=17.51;ReadPosRankSum=-0.917;SOR=0.675 GT:AD:DP:GQ:PL 0/1:5,24:41:58:530,0,58 2 166903445 rs7580482 T C 7367.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7396,740,0 2 167060449 rs10180721 A T 921.77 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=2.019 GT:AD:DP:GQ:PL 1/1:0,30:30:90:950,90,0 2 167060980 rs77944059 GAAAC G 2376.73 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=43.21;SOR=1.487 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2414,166,0 2 167099158 rs6746030 A G 2606.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2635,254,0 2 167137119 rs6432893 G A 813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.69;ReadPosRankSum=0.532;SOR=0.945 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,31:46:99:0|1:167137119_G_A:842,0,366 2 167144974 rs6747673 A T 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.453;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=6.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=1.801;SOR=1.321 GT:AD:DP:GQ:PL 0/1:67,44:111:99:1010,0,1491 2 167144995 rs13402180 T C 1218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.266;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=-1.259;SOR=0.815 GT:AD:DP:GQ:PL 0/1:72,52:124:99:1247,0,1645 2 167145142 rs13414203 A G 1371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.59;ReadPosRankSum=-0.53;SOR=0.838 GT:AD:DP:GQ:PL 0/1:32,56:88:99:1400,0,713 2 167163043 rs9646771 T C 1781.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1810,188,0 2 167168093 rs6432901 C T 1651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.725;SOR=0.716 GT:AD:DP:GQ:PL 0/1:70,73:143:99:1680,0,1793 2 167266440 rs16852124 C T 741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.191;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.814;SOR=0.693 GT:AD:DP:GQ:PL 0/1:34,34:68:99:770,0,994 2 167279922 rs6738031 C A 680.77 PASS AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,22:22:66:709,66,0 2 167334085 rs7565062 G T 4425.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4454,467,0 2 169103796 . C CGCCGGG 2006.73 PASS AC=2;AF=1;AN=2;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.42;QD=42.7;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,47:47:99:2044,138,0 2 169721377 rs479661 G A 4563.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.41;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,122:122:99:1|1:169721377_G_A:4592,366,0 2 169721381 rs3931 A G 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.048;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=5.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=-0.421;SOR=1.043 GT:AD:DP:GQ:PGT:PID:PL 0/1:51,66:117:99:0|1:169721377_G_A:1674,0,1151 2 169728069 . GAAA G 4893.73 PASS AC=2;AF=1;AN=2;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.46;QD=45.31;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,108:134:99:4931,358,0 2 169764176 rs492594 G C 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.105;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=0.965;SOR=0.665 GT:AD:DP:GQ:PL 0/1:67,44:111:99:1075,0,1702 2 169789016 rs497692 T C 1875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=1.394;SOR=0.596 GT:AD:DP:GQ:PL 0/1:76,76:152:99:1904,0,1822 2 169801488 rs853789 A G 602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.36;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.028;SOR=0.536 GT:AD:DP:GQ:PL 0/1:26,23:49:99:631,0,646 2 169814655 rs853772 G T 1535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.06;ReadPosRankSum=0.088;SOR=0.747 GT:AD:DP:GQ:PL 0/1:32,58:90:99:1564,0,829 2 169842809 rs2287618 T C 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=0.961;SOR=0.833 GT:AD:DP:GQ:PL 0/1:44,51:95:99:1286,0,1037 2 169997051 rs990626 G A 2704.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2733,285,0 2 170003432 rs4667591 T G 4342.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4371,435,0 2 170010985 rs2075252 T C 2341.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2370,225,0 2 170032989 rs2229265 C T 4702.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.5;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4731,512,0 2 170070152 rs17848168 G A 1077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-1.897;SOR=0.874 GT:AD:DP:GQ:PL 0/1:55,51:106:99:1106,0,1246 2 170092395 rs2229267 A G 1430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.117;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-2.596;SOR=0.8 GT:AD:DP:GQ:PL 0/1:78,61:139:99:1459,0,1854 2 170096018 rs830973 G A 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.494;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=5.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.493;SOR=0.375 GT:AD:DP:GQ:PL 0/1:65,62:127:99:1444,0,1504 2 170099446 rs831041 T G 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.53;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.095;SOR=0.826 GT:AD:DP:GQ:PL 0/1:33,31:64:99:780,0,736 2 170099473 rs831042 T C 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.311;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.239;SOR=0.954 GT:AD:DP:GQ:PL 0/1:39,44:83:99:1105,0,915 2 170099895 rs2075255 A C 5062.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.07;SOR=1.136 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,133:133:99:1|1:170099895_A_C:5091,412,0 2 170099899 rs2075254 G A 1634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.733;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,68:136:99:0|1:170099895_A_C:1663,0,1696 2 170103336 rs831043 T C 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-1.415;SOR=0.882 GT:AD:DP:GQ:PL 0/1:90,104:194:99:2513,0,2255 2 170103351 rs2075249 G T 2729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.81;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.459;SOR=0.858 GT:AD:DP:GQ:PL 0/1:105,117:222:99:2758,0,2688 2 170115588 rs2241190 T C 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=1.29;SOR=0.766 GT:AD:DP:GQ:PL 0/1:76,70:146:99:1585,0,1766 2 170129528 rs830994 G A 4563.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4592,471,0 2 170151227 rs10567789 TAA T 331.73 PASS AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=36.86;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,9:15:30:269,30,0 2 170175334 rs2229263 T C 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.503;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.26;ReadPosRankSum=-0.287;SOR=0.834 GT:AD:DP:GQ:PL 0/1:93,55:148:99:1251,0,2248 2 170218816 rs1559013 T C 2799.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2828,285,0 2 170218847 rs1559014 C G 3479.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3508,357,0 2 170403030 rs2253680 T C 3996.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.875;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.35;ReadPosRankSum=-0.734;SOR=0.829 GT:AD:DP:GQ:PL 1/1:2,139:141:99:4025,373,0 2 170411693 rs2683455 T C 3019.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3048,294,0 2 170413815 . CAA C 31.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.96;ReadPosRankSum=1.507;SOR=0.764 GT:AD:DP:GQ:PL 0/1:28,5:35:69:69,0,940 2 170488454 rs3754921 A G 1259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.461;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.36;SOR=0.439 GT:AD:DP:GQ:PL 0/1:52,48:100:99:1288,0,1358 2 170492584 rs2290008 T C 980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.305;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.735;SOR=0.626 GT:AD:DP:GQ:PL 0/1:51,44:95:99:1009,0,1178 2 170493103 rs1050354 T A 952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.5;ReadPosRankSum=-1.269;SOR=0.646 GT:AD:DP:GQ:PL 0/1:80,47:127:99:981,0,1972 2 170502343 rs79104083 A T 828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-1.012;SOR=0.892 GT:AD:DP:GQ:PL 0/1:31,32:63:99:857,0,782 2 170505684 rs3213946 G A 909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-0.356;SOR=0.744 GT:AD:DP:GQ:PL 0/1:46,40:86:99:938,0,1138 2 170550839 rs3820952 A G 1073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-2.022;SOR=0.461 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1102,0,1385 2 170605981 rs4667607 C T 5914.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.983 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5943,626,0 2 170684224 rs2303555 C T 3553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.016;SOR=0.672 GT:AD:DP:GQ:PL 0/1:126,133:259:99:3582,0,3348 2 170684548 rs79036304 G A 3473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.814;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=1.79;SOR=0.698 GT:AD:DP:GQ:PL 0/1:183,156:339:99:3502,0,4773 2 171225841 rs4668246 A G 1787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.139;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.096;SOR=0.763 GT:AD:DP:GQ:PL 0/1:90,76:166:99:1816,0,2222 2 171240249 rs11675394 C T 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.128;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=-0.007;SOR=0.698 GT:AD:DP:GQ:PL 0/1:76,61:137:99:1286,0,1718 2 171260787 rs6736609 G A 5429.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.19;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,146:146:99:5458,453,0 2 171260797 rs33962844 A G 1945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.083;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.229;SOR=0.505 GT:AD:DP:GQ:PL 0/1:73,84:157:99:1974,0,1656 2 171260820 rs6751520 T C 4933.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4962,507,0 2 171300575 rs17426211 C A 1359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.62;ReadPosRankSum=-0.317;SOR=0.624 GT:AD:DP:GQ:PL 0/1:35,58:93:99:1388,0,765 2 171355198 rs6761297 A G 2733.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2762,293,0 2 171356274 rs10185178 G A 3858.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.014;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.07;ReadPosRankSum=-1.239;SOR=0.749 GT:AD:DP:GQ:PL 1/1:2,146:148:99:3887,384,0 2 171572940 rs3749036 G A 4219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0;DB;DP=381;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.687;SOR=0.641 GT:AD:DP:GQ:PL 0/1:201,179:380:99:4248,0,5279 2 171573185 rs1134626 G T 4302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.736;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.929;SOR=0.87 GT:AD:DP:GQ:PL 0/1:178,170:348:99:4331,0,4469 2 171702585 rs701491 G A 727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.522;SOR=0.664 GT:AD:DP:GQ:PL 0/1:42,37:79:99:756,0,986 2 171822466 rs4668356 C T 3781.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3810,386,0 2 171822576 rs3770436 C T 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.553;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.875;SOR=0.871 GT:AD:DP:GQ:PL 0/1:68,62:130:99:1576,0,1666 2 171850329 rs3731993 T G 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=2.268;SOR=0.853 GT:AD:DP:GQ:PL 0/1:94,81:175:99:1877,0,2270 2 172180771 rs10205459 A G 4080.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4109,440,0 2 172378818 rs868106 A G 3563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.002;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=1.547;SOR=0.883 GT:AD:DP:GQ:PL 0/1:114,122:236:99:3592,0,2970 2 172398311 rs7586144 T C 676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.267;SOR=0.336 GT:AD:DP:GQ:PL 0/1:29,32:61:99:705,0,667 2 172411273 rs10455 G A 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=10.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=1.667;SOR=1.217 GT:AD:DP:GQ:PL 0/1:106,73:179:99:1672,0,2679 2 172582108 . G GT 209.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.5;MQ=60.8;MQRankSum=0.939;QD=9.53;ReadPosRankSum=1.823;SOR=1.188 GT:AD:DP:GQ:PL 0/1:7,15:26:99:247,0,121 2 172600716 rs12619041 C A 828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=-0.658;SOR=0.855 GT:AD:DP:GQ:PL 0/1:58,44:102:99:857,0,1449 2 172693780 rs3765166 G A 782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.039;SOR=0.569 GT:AD:DP:GQ:PL 0/1:38,35:73:99:811,0,1014 2 172725301 rs1878583 A G 2890.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.037 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2919,297,0 2 172926211 rs62183852 T G 754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=3.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=-0.737;SOR=1.09 GT:AD:DP:GQ:PL 0/1:53,33:86:99:783,0,1411 2 172966250 rs2228184 T C 2388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.702;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=7.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.428;SOR=1.166 GT:AD:DP:GQ:PL 0/1:113,96:209:99:2417,0,2601 2 173292709 rs6744873 A G 2502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.491;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=-0.153;SOR=0.715 GT:AD:DP:GQ:PGT:PID:PL 0/1:115,70:185:99:0|1:173292709_A_G:2531,0,5537 2 173292713 rs6716540 C T 2421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.871;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=1.622;SOR=0.683 GT:AD:DP:GQ:PGT:PID:PL 0/1:116,67:183:99:0|1:173292709_A_G:2450,0,5598 2 173600783 rs34574292 C CG 6221.73 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=37.03;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,168:168:99:6259,505,0 2 173659913 rs7585729 T C 2898.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2927,290,0 2 174068513 rs11899707 G C 1906.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1935,183,0 2 174123408 rs150855284 ATTTTGT A 361.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.701;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=4.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.022;SOR=1.915 GT:AD:DP:GQ:PGT:PID:PL 0/1:21,11:32:99:0|1:174123399_A_G:399,0,1214 2 175200903 rs35548534 G C 6990.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7019,699,0 2 175260355 rs719161 G T 1661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.049;SOR=0.665 GT:AD:DP:GQ:PL 0/1:69,70:139:99:1690,0,1728 2 175263063 rs10497410 G A 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.214;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.65;ReadPosRankSum=0.52;SOR=0.668 GT:AD:DP:GQ:PL 0/1:40,71:111:99:1654,0,993 2 175436940 rs4972450 G A 10960.8 PASS AC=2;AF=1;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,358:358:99:10989,1073,0 2 175614908 rs139930312 CAA C 381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.409;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=6.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.056;SOR=1.781 GT:AD:DP:GQ:PL 0/1:22,13:49:99:410,0,648 2 175677022 rs12613075 C T 1922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=1.069;SOR=0.56 GT:AD:DP:GQ:PL 0/1:60,81:143:99:1951,0,1414 2 175689249 . G GA 180.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.44;ReadPosRankSum=2.178;SOR=0.489 GT:AD:DP:GQ:PL 0/1:56,18:78:99:218,0,1173 2 176957822 rs2518053 G A 4782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.362;SOR=0.675 GT:AD:DP:GQ:PL 0/1:190,207:397:99:4811,0,4617 2 176995145 . TGCG T 69.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.33;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=7.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.7;ReadPosRankSum=-0.259;SOR=0.467 GT:AD:DP:GQ:PL 0/1:90,9:101:99:107,0,3739 2 178364328 rs371154486 AT A 86.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.07;ReadPosRankSum=1.302;SOR=0.622 GT:AD:DP:GQ:PL 0/1:31,11:46:99:124,0,720 2 178417142 rs11694988 C T 11931.8 PASS AC=2;AF=1;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=31.4;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,380:380:99:11960,1140,0 2 178417225 rs11695035 C T 14011.8 PASS AC=2;AF=1;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.89;QD=30.26;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,463:463:99:14040,1387,0 2 178481818 rs10497497 G T 7837.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.6;QD=30.26;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7866,777,0 2 178482094 rs28630685 C T 2568.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.38;QD=38.34;SOR=5.58 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2597,202,0 2 178494173 rs3830637 G GGGA 3732.73 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=45.52;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,82:82:99:3770,255,0 2 178682603 rs6720891 T C 406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-1.733;SOR=0.895 GT:AD:DP:GQ:PL 0/1:18,19:37:99:435,0,435 2 178682655 rs3821010 A G 390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=2.522;SOR=0.368 GT:AD:DP:GQ:PL 0/1:18,20:38:99:419,0,412 2 178936373 rs1435573 T G 2962.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2991,285,0 2 178936614 rs6433711 C T 4067.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4096,434,0 2 179203797 rs1434087 G A 2736.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2765,282,0 2 179296821 rs3997876 G A 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.995;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.28;ReadPosRankSum=0.019;SOR=0.879 GT:AD:DP:GQ:PL 0/1:137,77:214:99:1587,0,3653 2 179300971 rs62176107 G A 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.249;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=1.084;SOR=0.689 GT:AD:DP:GQ:PGT:PID:PL 0/1:111,49:160:99:0|1:179300971_G_A:1712,0,5452 2 179300979 rs77419724 A T 1652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.174;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.092;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,48:158:99:0|1:179300971_G_A:1681,0,5422 2 179312316 . G GTGCAGGTTATGTCACCAACGGTTACTCTGAAGGTGAAAGTGGGCACGTGTATTTGCACATCAGATCTTTC 103.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.687;ClippingRankSum=0;DP=132;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.79;ReadPosRankSum=-0.483;SOR=1.112 GT:AD:DP:GQ:PL 0/1:119,12:131:99:141,0,44632 2 179315734 rs141354030 GGC G 707.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=19.045;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.08;ReadPosRankSum=-3.087;SOR=2.124 GT:AD:DP:GQ:PGT:PID:PL 0/1:198,32:230:99:0|1:179315734_GGC_G:745,0,9060 2 179315757 . T G 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.832;ClippingRankSum=0;DP=221;ExcessHet=3.0103;FS=16.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.31;ReadPosRankSum=0.529;SOR=2.012 GT:AD:DP:GQ:PGT:PID:PL 0/1:181,36:217:99:0|1:179315734_GGC_G:964,0,8361 2 179395958 rs3813250 T C 2486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.232;SOR=0.612 GT:AD:DP:GQ:PL 0/1:130,108:238:99:2515,0,3204 2 179396162 rs56308529 C G 2118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=0.816;SOR=0.829 GT:AD:DP:GQ:PL 0/1:114,92:206:99:2147,0,2877 2 179396354 rs3829748 G A 2661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.663;SOR=0.771 GT:AD:DP:GQ:PL 0/1:133,105:238:99:2690,0,3572 2 179397561 rs3829747 C T 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.959;SOR=0.589 GT:AD:DP:GQ:PL 0/1:95,75:170:99:1845,0,2427 2 179398823 rs2857265 G A 2303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.236;SOR=0.649 GT:AD:DP:GQ:PL 0/1:89,95:184:99:2332,0,2338 2 179400585 rs71979618 G GA 170.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.015;QD=3.35;ReadPosRankSum=-0.751;SOR=0.869 GT:AD:DP:GQ:PL 0/1:34,17:69:99:208,0,724 2 179401742 rs55742743 C T 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=1.558;SOR=0.771 GT:AD:DP:GQ:PL 0/1:69,63:132:99:1480,0,1729 2 179404786 rs2288325 A T 1417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.892;SOR=0.727 GT:AD:DP:GQ:PL 0/1:85,61:146:99:1446,0,2089 2 179406003 rs3731750 C A 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=-0.521;SOR=0.597 GT:AD:DP:GQ:PL 0/1:58,71:129:99:1772,0,1548 2 179406191 rs3731749 C T 3065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-1.07;SOR=0.858 GT:AD:DP:GQ:PL 0/1:97,125:222:99:3094,0,2320 2 179411381 . C G 1977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.123;ClippingRankSum=0;DP=169;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.198;SOR=0.616 GT:AD:DP:GQ:PL 0/1:95,74:169:99:2006,0,2507 2 179413110 rs3731748 G A 2703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.096;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=-0.464;SOR=0.653 GT:AD:DP:GQ:PL 0/1:86,106:192:99:2732,0,2005 2 179421694 rs9808377 A G 2384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.429;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=0.707;SOR=0.536 GT:AD:DP:GQ:PL 0/1:75,93:168:99:2413,0,1788 2 179427186 rs2366751 A G 2675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.654;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=-0.548;SOR=0.526 GT:AD:DP:GQ:PL 0/1:80,102:182:99:2704,0,1969 2 179427536 rs3829746 T C 1815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.021;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-0.603;SOR=0.881 GT:AD:DP:GQ:PL 0/1:104,79:183:99:1844,0,2373 2 179430997 rs3731746 G A 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-1.265;SOR=0.646 GT:AD:DP:GQ:PL 0/1:79,75:154:99:1893,0,2035 2 179436020 rs744426 G A 2048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=7.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.531;SOR=0.588 GT:AD:DP:GQ:PL 0/1:92,87:179:99:2077,0,2413 2 179444137 rs2288571 A G 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.389;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=10.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-2.132;SOR=0.55 GT:AD:DP:GQ:PL 0/1:64,50:114:99:1253,0,1652 2 179444768 rs4145333 C G 5273.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5302,529,0 2 179444939 rs2303838 C T 1384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.09;SOR=0.65 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1413,0,1260 2 179447848 rs4894029 T C 2332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-0.901;SOR=0.796 GT:AD:DP:GQ:PL 0/1:118,106:224:99:2361,0,2725 2 179451420 rs2042996 G A 1632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.802;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.175;SOR=0.643 GT:AD:DP:GQ:PL 0/1:76,76:152:99:1661,0,1923 2 179454394 rs1560221 A G 2634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.252;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.392;SOR=0.547 GT:AD:DP:GQ:PL 0/1:123,107:230:99:2663,0,3130 2 179455207 rs2163009 T C 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.173;SOR=0.832 GT:AD:DP:GQ:PL 0/1:83,89:172:99:2250,0,2092 2 179457147 rs16866406 G A 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.556;SOR=0.748 GT:AD:DP:GQ:PL 0/1:73,73:146:99:1738,0,1922 2 179458591 rs2288569 C T 2290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.54;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=1.786;SOR=0.799 GT:AD:DP:GQ:PL 0/1:78,91:169:99:2319,0,1953 2 179464527 rs1001238 T C 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.152;SOR=0.802 GT:AD:DP:GQ:PL 0/1:55,73:128:99:1763,0,1236 2 179498042 rs6723526 T C 2363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.368;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-0.705;SOR=0.859 GT:AD:DP:GQ:PL 0/1:98,89:187:99:2392,0,2301 2 179526524 rs370765948 G A 2340.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=5.011;MLEAC=1;MLEAF=0.5;MQ=39.76;MQRankSum=-3.139;QD=9.25;ReadPosRankSum=1.893;SOR=0.606 GT:AD:DP:GQ:PL 0/1:137,116:253:99:2369,0,2953 2 179543217 rs35112591 C T 707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.25;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=-1.111;SOR=0.641 GT:AD:DP:GQ:PL 0/1:49,34:83:99:736,0,1227 2 179558366 rs2042995 T C 1559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.94;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.805;SOR=0.638 GT:AD:DP:GQ:PL 0/1:59,73:132:99:1588,0,1335 2 179563643 rs368277751 TA T 271.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=6.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.77;ReadPosRankSum=-0.85;SOR=0.284 GT:AD:DP:GQ:PL 0/1:50,22:98:99:309,0,1215 2 179575511 rs72648998 C T 2968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.747;SOR=0.757 GT:AD:DP:GQ:PL 0/1:144,128:272:99:2997,0,3677 2 179578108 rs71393436 T TACAAA 3274.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=4.565;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=3.162;QD=18.5;ReadPosRankSum=-0.735;SOR=0.42 GT:AD:DP:GQ:PL 0/1:91,86:177:99:3312,0,4996 2 179578730 rs2562839 G A 2372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.827;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-1.618;SOR=0.661 GT:AD:DP:GQ:PL 0/1:131,106:237:99:2401,0,2947 2 179579093 rs12693164 T C 2017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-2.076;SOR=0.673 GT:AD:DP:GQ:PL 0/1:106,92:198:99:2046,0,2578 2 179579212 rs2562838 T C 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.214;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.59;SOR=0.925 GT:AD:DP:GQ:PL 0/1:80,65:145:99:1817,0,2011 2 179579822 rs2562836 T A 2098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.156;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=0.31;SOR=0.978 GT:AD:DP:GQ:PL 0/1:82,85:167:99:2127,0,1992 2 179582327 rs13390491 C T 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.397;SOR=0.693 GT:AD:DP:GQ:PL 0/1:87,89:176:99:2014,0,2102 2 179582537 rs2627043 G T 2015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.042;SOR=0.584 GT:AD:DP:GQ:PL 0/1:99,87:186:99:2044,0,2482 2 179583317 rs72648978 G A 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=0.444;SOR=0.798 GT:AD:DP:GQ:PL 0/1:103,72:175:99:1802,0,2665 2 179583496 rs16866465 T G 2801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=0.102;SOR=0.818 GT:AD:DP:GQ:PL 0/1:101,111:212:99:2830,0,2400 2 179585266 rs2562831 C T 5441.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5470,518,0 2 179585393 rs2562830 A G 1535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.202;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=0.124;SOR=0.874 GT:AD:DP:GQ:PL 0/1:55,61:116:99:1564,0,1277 2 179587130 rs12693166 C G 3049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=-1.343;SOR=0.823 GT:AD:DP:GQ:PL 0/1:99,125:224:99:3078,0,2449 2 179595117 rs17076 C G 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.514;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.95;SOR=0.725 GT:AD:DP:GQ:PL 0/1:91,69:160:99:2000,0,2492 2 179596554 rs72648942 T C 3048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.93;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.325;SOR=0.772 GT:AD:DP:GQ:PL 0/1:113,126:239:99:3077,0,2566 2 179600563 rs2742348 G A 5983.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6012,606,0 2 179600648 rs2742347 C T 2709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.206;SOR=0.698 GT:AD:DP:GQ:PL 0/1:122,114:236:99:2738,0,3000 2 179604160 rs1883085 T G 2558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.813;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=0.494;SOR=0.738 GT:AD:DP:GQ:PL 0/1:90,90:180:99:2587,0,2180 2 179604366 rs2562829 T G 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.119;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=1.002;SOR=0.863 GT:AD:DP:GQ:PL 0/1:94,87:181:99:2344,0,2301 2 179604742 rs1883084 G A 2466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.566;SOR=0.752 GT:AD:DP:GQ:PL 0/1:122,103:225:99:2495,0,3078 2 179605180 rs746578 C A 2335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.321;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.151;SOR=0.735 GT:AD:DP:GQ:PL 0/1:98,96:194:99:2364,0,2391 2 179605705 rs2742357 A G 3465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.486;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-1.793;SOR=0.751 GT:AD:DP:GQ:PL 0/1:121,132:253:99:3494,0,2874 2 179606538 rs2627037 G A 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.323;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-1.178;SOR=0.658 GT:AD:DP:GQ:PL 0/1:79,91:170:99:2320,0,1714 2 179611711 rs66677602 C A 2573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.892;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=6.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-2.581;SOR=0.419 GT:AD:DP:GQ:PL 0/1:98,107:205:99:2602,0,2815 2 179614952 rs10803917 A G 6246.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.95;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6275,552,0 2 179615887 rs922984 T C 1941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.47;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.71;ReadPosRankSum=-0.652;SOR=0.546 GT:AD:DP:GQ:PL 0/1:57,75:132:99:1970,0,1432 2 179615931 rs922985 C G 3839.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.22;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3868,318,0 2 179615994 rs922986 T C 4035.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4064,400,0 2 179616770 . GAA G,GA 1058.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.37;MQRankSum=0.426;QD=24.06;ReadPosRankSum=-1.314;SOR=0.907 GT:AD:DP:GQ:PL 1/2:3,29,12:49:99:1096,184,201,632,0,578 2 179620951 rs7585334 C T 1232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.246;SOR=0.413 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1261,0,1350 2 179621477 rs6433728 C T 3545.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.309 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3574,351,0 2 179623758 rs2291310 C T 1956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.935;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=2.3;SOR=0.542 GT:AD:DP:GQ:PL 0/1:60,85:145:99:1985,0,1660 2 179629363 rs4894043 T C 4776.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4805,432,0 2 179629461 rs2291311 C T 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.965;SOR=0.553 GT:AD:DP:GQ:PL 0/1:116,113:229:99:2500,0,2621 2 179631214 rs2291312 T C 2210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.592;SOR=0.6 GT:AD:DP:GQ:PL 0/1:80,98:178:99:2239,0,1739 2 179634936 rs2306636 C T 3053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.421;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.386;SOR=0.759 GT:AD:DP:GQ:PL 0/1:118,136:254:99:3082,0,2984 2 179637861 rs56142888 C G 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=-0.524;SOR=0.527 GT:AD:DP:GQ:PL 0/1:64,71:135:99:1902,0,1723 2 179638238 rs2291306 G A 2051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-1.431;SOR=0.608 GT:AD:DP:GQ:PL 0/1:71,82:153:99:2080,0,1871 2 179641975 rs12476289 C T 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.469;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-1.542;SOR=0.779 GT:AD:DP:GQ:PL 0/1:112,83:195:99:2028,0,2642 2 179642425 rs719201 G A 4874.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4903,471,0 2 179644035 rs1552280 G A 3409.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3438,341,0 2 179644160 rs2291308 T C 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.542;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.12;ReadPosRankSum=0.181;SOR=1.308 GT:AD:DP:GQ:PL 0/1:25,25:50:99:784,0,730 2 179644855 rs10497520 T C 1433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.298;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.006;SOR=0.826 GT:AD:DP:GQ:PL 0/1:88,56:144:99:1462,0,1975 2 179647546 rs55863869 A G 2764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.102;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=1.618;SOR=0.547 GT:AD:DP:GQ:PL 0/1:134,123:257:99:2793,0,3015 2 179753245 rs7573293 C T 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.782;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.036;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=-0.016;SOR=0.394 GT:AD:DP:GQ:PL 0/1:37,54:91:99:1306,0,966 2 179974761 rs2305170 A C 1049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.446;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=-0.356;SOR=0.922 GT:AD:DP:GQ:PL 0/1:70,47:117:99:1078,0,1605 2 180047908 rs6757681 T C 743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.453;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-1.048;SOR=1.156 GT:AD:DP:GQ:PL 0/1:37,30:67:99:772,0,890 2 180810180 rs6433817 C T 3182.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3211,309,0 2 180810264 rs6433818 A T 3547.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3576,357,0 2 180835589 rs4894140 A G 2666.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.33;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2695,239,0 2 180835792 rs3768837 T A 2685.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2714,282,0 2 180846743 rs3738943 G T 1663.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.835 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1692,162,0 2 182344846 rs11412304 G GT 1505.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.669;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.52;ReadPosRankSum=0.517;SOR=1.01 GT:AD:DP:GQ:PL 1/1:4,55:67:99:1528,127,0 2 182347072 rs2305588 T C 364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=1.861;SOR=1.27 GT:AD:DP:GQ:PL 0/1:13,15:28:99:393,0,310 2 182374534 rs1143674 A G 944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.58;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=4.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.628;SOR=1.163 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,39:83:99:0|1:182374534_A_G:973,0,1677 2 182374553 rs2305584 A T 1493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.783;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.19;ReadPosRankSum=-2.216;SOR=0.483 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,42:74:99:1|0:182374534_A_G:1522,0,1255 2 182395345 rs1143676 G A 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.257;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.608;SOR=0.723 GT:AD:DP:GQ:PL 0/1:66,51:117:99:1136,0,1463 2 182399097 rs7562325 T C 480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.575;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=0.365;SOR=0.648 GT:AD:DP:GQ:PL 0/1:33,23:56:99:509,0,758 2 182399638 rs2124443 A G 1417.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=33.76;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1446,126,0 2 182403851 rs10180793 G A 2424.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2453,245,0 2 182413259 rs12997453 A G 568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=-0.234;SOR=0.446 GT:AD:DP:GQ:PL 0/1:16,23:39:99:597,0,459 2 182413602 rs13003064 A T 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.929;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.581;SOR=0.495 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1196,0,975 2 183584755 rs6729801 G A 510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.767;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=0.138;SOR=1.131 GT:AD:DP:GQ:PL 0/1:35,23:58:99:539,0,871 2 183593697 rs288280 C T 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=6.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.509;SOR=0.908 GT:AD:DP:GQ:PL 0/1:66,61:127:99:1417,0,1589 2 183622547 rs288334 T G 926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.004;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=2.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=2.323;SOR=0.432 GT:AD:DP:GQ:PL 0/1:37,35:72:99:955,0,929 2 183627504 rs192618 A G 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-1.25;SOR=0.684 GT:AD:DP:GQ:PL 0/1:57,50:107:99:1159,0,1343 2 183703336 rs288326 G A 637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=0.566;SOR=0.804 GT:AD:DP:GQ:PL 0/1:43,27:70:99:666,0,1217 2 183799558 rs9288088 G C 580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.224;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-2.434;SOR=0.465 GT:AD:DP:GQ:PL 0/1:22,25:47:99:609,0,500 2 183827018 rs2271671 G A 1033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=8.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.118;SOR=1.668 GT:AD:DP:GQ:PL 0/1:45,45:90:99:1062,0,1131 2 183832100 . CA C 262.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.465;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.98;ReadPosRankSum=0.152;SOR=0.682 GT:AD:DP:GQ:PL 0/1:45,21:78:99:300,0,1080 2 183848114 rs1400130 T C 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.457;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=0.593;SOR=0.876 GT:AD:DP:GQ:PL 0/1:31,44:75:99:1059,0,603 2 185463815 rs147358574 C CCT 2646.7 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.34;QD=30.78;ReadPosRankSum=-1.186;SOR=0.645 GT:AD:DP:GQ:PL 0/1:7,79:86:6:2683,0,6 2 185800905 rs12476147 A T 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.123;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.461;SOR=0.895 GT:AD:DP:GQ:PL 0/1:81,68:149:99:1599,0,1951 2 185801755 rs4667002 A G 1828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.797;SOR=0.709 GT:AD:DP:GQ:PL 0/1:68,71:139:99:1857,0,1820 2 185802363 rs12477430 A G 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.987;SOR=0.638 GT:AD:DP:GQ:PL 0/1:71,73:144:99:1822,0,1773 2 185803364 rs3731834 C G 2319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.499;SOR=0.596 GT:AD:DP:GQ:PL 0/1:120,95:215:99:2348,0,3320 2 186603605 rs35617283 A AG 2655.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.932;QD=11.75;ReadPosRankSum=-0.742;SOR=0.688 GT:AD:DP:GQ:PL 0/1:104,122:226:99:2693,0,2609 2 186625770 rs7562137 A G 530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.81;ReadPosRankSum=1.181;SOR=0.467 GT:AD:DP:GQ:PL 0/1:41,27:68:99:559,0,967 2 186627943 rs17228441 T C 705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.875;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=4.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.448;SOR=0.909 GT:AD:DP:GQ:PL 0/1:34,31:65:99:734,0,761 2 186654592 rs992822 A G 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.971;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=1.837;SOR=0.436 GT:AD:DP:GQ:PL 0/1:26,28:54:99:784,0,758 2 186655726 rs10931199 G A 1686.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1715,162,0 2 186656657 rs10173807 C T 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.845;SOR=0.899 GT:AD:DP:GQ:PL 0/1:69,63:132:99:1600,0,1826 2 186656840 rs17815052 T C 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.353;SOR=0.489 GT:AD:DP:GQ:PL 0/1:59,46:105:99:1214,0,1588 2 186656956 rs17229201 T C 1139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.524;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.235;SOR=0.605 GT:AD:DP:GQ:PL 0/1:63,46:109:99:1168,0,1587 2 186657089 rs17229222 C A 1182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.22;SOR=0.701 GT:AD:DP:GQ:PL 0/1:55,51:106:99:1211,0,1302 2 186658056 rs60029104 G A 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-2.173;SOR=0.907 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1238,0,1597 2 186658438 rs10490391 C T 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=5.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.432;SOR=0.929 GT:AD:DP:GQ:PL 0/1:59,59:118:99:1476,0,1538 2 186658565 rs10490392 G T 764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=0.611;SOR=0.679 GT:AD:DP:GQ:PL 0/1:54,33:87:99:793,0,1494 2 186659359 rs2161036 G T 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=0.309;SOR=0.643 GT:AD:DP:GQ:PL 0/1:46,61:107:99:1571,0,1181 2 186661673 rs55938253 A G 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.998;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=9.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.647;SOR=0.977 GT:AD:DP:GQ:PL 0/1:89,49:138:99:1317,0,2244 2 186664473 rs11686997 T C 596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.228;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-0.601;SOR=0.65 GT:AD:DP:GQ:PL 0/1:32,26:58:99:625,0,836 2 186664963 rs10931200 C A 1286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.966;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-0.494;SOR=0.68 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1315,0,1917 2 186665432 rs36004074 G A 1229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.948;SOR=0.659 GT:AD:DP:GQ:PL 0/1:58,50:108:99:1258,0,1607 2 186665824 rs11695215 A G 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.362;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-1.442;SOR=0.919 GT:AD:DP:GQ:PL 0/1:55,50:105:99:1263,0,1301 2 186667121 rs7605884 T C 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.538;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=4.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=0.171;SOR=0.742 GT:AD:DP:GQ:PL 0/1:56,64:120:99:1655,0,1379 2 186668935 rs13003744 A G 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.362;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.815;SOR=0.793 GT:AD:DP:GQ:PL 0/1:59,60:119:99:1571,0,1353 2 186670104 rs7576532 A C 3052.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3081,281,0 2 186670780 rs16827154 T A 922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.09;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.783;SOR=1.04 GT:AD:DP:GQ:PL 0/1:34,38:72:99:951,0,816 2 186670979 rs4666689 T C 3792.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3821,372,0 2 186671357 rs17826534 G A 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=0.149;SOR=0.742 GT:AD:DP:GQ:PL 0/1:69,51:120:99:1119,0,1843 2 186671912 rs1862066 G A 1339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.56;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=0.7;SOR=0.676 GT:AD:DP:GQ:PL 0/1:74,60:134:99:1368,0,1727 2 186672527 rs72900086 T A 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.387;SOR=0.568 GT:AD:DP:GQ:PL 0/1:44,57:101:99:1434,0,1016 2 186672897 rs4666690 A G 1700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.497;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=2.306;SOR=0.592 GT:AD:DP:GQ:PL 0/1:60,67:127:99:1729,0,1484 2 186678633 rs17826666 C T 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.544;SOR=0.832 GT:AD:DP:GQ:PL 0/1:63,61:124:99:1421,0,1647 2 186697876 rs1468999 A G 2713.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2742,270,0 2 187487160 rs9333288 G A 389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.39;ReadPosRankSum=-0.731;SOR=0.48 GT:AD:DP:GQ:PL 0/1:41,20:61:99:418,0,1123 2 187532417 rs2230616 G A 1601.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=1.22 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,54:54:99:1|1:187532416_T_C:1630,162,0 2 187559029 rs10693920 A ACAGCAG,ACAGCAGCAG 4498.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=2.991;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=61.05;MQRankSum=0;QD=18.9;ReadPosRankSum=0.449;SOR=0.621 GT:AD:DP:GQ:PL 1/2:15,121,102:248:99:4536,2019,4183,2413,0,5137 2 187698751 rs7559533 G A 2077.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2106,207,0 2 188211112 rs3771095 C T 452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.55;ReadPosRankSum=0;SOR=0.45 GT:AD:DP:GQ:PL 0/1:38,22:60:99:481,0,1007 2 188250301 rs698577 T A 1098.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1127,117,0 2 188343497 rs7586970 T C 1220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.653;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.17;SOR=0.92 GT:AD:DP:GQ:PL 0/1:58,52:110:99:1249,0,1399 2 189859434 rs371354802 CT C 95.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.619;QD=1.04;ReadPosRankSum=-0.22;SOR=0.432 GT:AD:DP:GQ:PL 0/1:74,18:103:99:133,0,1774 2 189863389 rs13306272 C T 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=1.765;SOR=0.501 GT:AD:DP:GQ:PL 0/1:50,34:84:99:748,0,1275 2 189864080 rs1800255 G A 2047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.115;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=4.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.223;SOR=0.79 GT:AD:DP:GQ:PL 0/1:81,90:171:99:2076,0,2053 2 189875421 rs1516446 T G 5324.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.07;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5353,483,0 2 189904203 rs10208525 A G 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.6;SOR=0.554 GT:AD:DP:GQ:PL 0/1:104,89:193:99:2113,0,2707 2 189904233 rs10197596 T G 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=0.811;SOR=0.694 GT:AD:DP:GQ:PL 0/1:111,88:199:99:1934,0,2717 2 189907937 rs6434312 A G 3947.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3976,417,0 2 189923630 rs5837121 AT A 1725.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.27;QD=22.41;ReadPosRankSum=-1.822;SOR=0.333 GT:AD:DP:GQ:PL 1/1:4,73:90:99:1756,137,0 2 189932831 rs2229495 T C 2987.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3016,303,0 2 189948696 rs56310996 G A 474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.25;ReadPosRankSum=1.156;SOR=0.662 GT:AD:DP:GQ:PL 0/1:49,27:76:99:503,0,1189 2 189953508 rs58106884 C T 748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.965;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.217;SOR=0.804 GT:AD:DP:GQ:PL 0/1:31,33:64:99:777,0,671 2 189974958 rs4128539 G T 3609.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=1.299 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3638,380,0 2 190323530 rs1157910 A G 1634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.636;SOR=0.649 GT:AD:DP:GQ:PL 0/1:52,77:129:99:1663,0,1090 2 190331262 rs2289223 T C 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.453;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=0.229;SOR=0.472 GT:AD:DP:GQ:PL 0/1:70,46:116:99:1012,0,1677 2 190445194 rs11568351 G C 2173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.476;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.693;SOR=0.795 GT:AD:DP:GQ:PL 0/1:102,94:196:99:2202,0,2276 2 190531426 rs1437880 G A 3635.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3664,359,0 2 190595258 rs1225090 G T 2226.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2255,231,0 2 190602513 rs1225099 T C 4395.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4424,434,0 2 190617643 rs2243876 A G 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4315,446,0 2 191161622 rs1058180 T C 3631.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.51;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3660,395,0 2 191184475 rs291466 A G 3731.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3760,369,0 2 191224981 rs4656 G T 1981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=4.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=-1.054;SOR=0.424 GT:AD:DP:GQ:PL 0/1:56,79:135:99:2010,0,1298 2 191231458 rs11544940 G A 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-0.456;SOR=1.003 GT:AD:DP:GQ:PL 0/1:59,47:106:99:1025,0,1553 2 191235610 rs7592352 A G 1352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.189;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=1.006;SOR=0.504 GT:AD:DP:GQ:PL 0/1:56,54:110:99:1381,0,1530 2 191235901 rs1882891 A C 5957.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.949;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=3.216;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.55;ReadPosRankSum=2.355;SOR=0.39 GT:AD:DP:GQ:PL 1/1:1,194:195:99:5986,574,0 2 191379268 rs4586658 G A 5823.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5852,588,0 2 191922841 rs3024866 G A 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.281;SOR=0.616 GT:AD:DP:GQ:PL 0/1:54,62:116:99:1389,0,1318 2 192011485 . T TA 45.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0;DP=131;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.4;ReadPosRankSum=3.222;SOR=0.495 GT:AD:DP:GQ:PL 0/1:97,16:123:83:83,0,2062 2 192214966 rs59642822 T C 1369.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1398,141,0 2 192250726 rs13018796 G A 1752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=-1.312;SOR=0.724 GT:AD:DP:GQ:PL 0/1:115,78:193:99:1781,0,2982 2 192272933 rs2271768 A G 837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=2.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.368;SOR=1.056 GT:AD:DP:GQ:PL 0/1:42,38:80:99:866,0,957 2 192279327 rs2271767 T C 1489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.49;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-1.393;SOR=0.648 GT:AD:DP:GQ:PL 0/1:84,64:148:99:1518,0,1911 2 192711162 rs4471838 A C 6545.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=1.001 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6574,638,0 2 192711385 rs35883486 G A 7332.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.073;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.05;ReadPosRankSum=-0.775;SOR=0.815 GT:AD:DP:GQ:PL 1/1:2,242:244:99:7361,683,0 2 196673533 rs13411834 A G 4694.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4723,491,0 2 196756535 rs11292337 GA G 1473.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;MQRankSum=0.315;QD=23.39;ReadPosRankSum=-1.475;SOR=1.075 GT:AD:DP:GQ:PL 1/1:1,62:67:99:1511,165,0 2 196791276 rs1489802 T G 1053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=-1.754;SOR=0.63 GT:AD:DP:GQ:PL 0/1:67,49:116:99:1082,0,1616 2 196822004 rs62623378 A G 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.823;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=1.001;SOR=0.963 GT:AD:DP:GQ:PL 0/1:76,80:156:99:2181,0,1750 2 196849453 rs17363011 C T 707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.341;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=4.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.06;ReadPosRankSum=0.074;SOR=0.26 GT:AD:DP:GQ:PL 0/1:15,32:47:99:736,0,386 2 196851911 rs10931715 G A 842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.217;SOR=0.713 GT:AD:DP:GQ:PL 0/1:51,37:88:99:871,0,1342 2 196866420 rs6434811 C T 3555.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.476 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3584,359,0 2 196866433 rs144390858 A C 1604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=2.167;SOR=0.686 GT:AD:DP:GQ:PL 0/1:73,70:143:99:1633,0,1804 2 196912067 rs4850381 A G 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.165;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=0.92;SOR=0.912 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1263,0,1594 2 196915991 rs10174065 A G 697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.338;SOR=0.467 GT:AD:DP:GQ:PL 0/1:28,33:61:99:726,0,629 2 197004439 rs1054537 A G 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.685;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.831;SOR=0.696 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1832,0,1456 2 197021276 rs10931726 T C 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.112;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.355;SOR=0.768 GT:AD:DP:GQ:PL 0/1:92,81:173:99:1902,0,2093 2 197021372 rs12478353 T A 1306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.39;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.123;SOR=0.923 GT:AD:DP:GQ:PL 0/1:62,56:118:99:1335,0,1517 2 197118729 rs4850690 C T 1791.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1820,177,0 2 197172816 rs2305567 G A 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.178;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.631;SOR=0.966 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1700,0,1761 2 197183367 rs143361492 A G 1145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.76;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=1.082;SOR=0.898 GT:AD:DP:GQ:PL 0/1:38,47:85:99:1174,0,898 2 197184321 rs1531111 C T 1183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.849;SOR=0.919 GT:AD:DP:GQ:PL 0/1:65,47:112:99:1212,0,1663 2 197208366 rs6757981 C T 639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.731;SOR=0.957 GT:AD:DP:GQ:PL 0/1:25,29:54:99:668,0,582 2 197777589 rs12693800 C T 2801.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2830,288,0 2 197863698 rs17385301 G A 3228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=3.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.83;SOR=0.817 GT:AD:DP:GQ:PL 0/1:107,139:246:99:3257,0,2419 2 197866470 rs12478175 T A 1232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.71;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=1.163;SOR=0.903 GT:AD:DP:GQ:PL 0/1:62,59:121:99:1261,0,1299 2 197986048 rs2697270 T C 3507.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3536,351,0 2 198175297 rs10931780 G C 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=-0.825;SOR=0.368 GT:AD:DP:GQ:PL 0/1:38,54:92:99:1325,0,818 2 198669871 rs770658 G C 2333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.403;SOR=0.69 GT:AD:DP:GQ:PL 0/1:79,94:173:99:2362,0,1882 2 200173684 rs10153730 T G 3732.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.234 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3761,378,0 2 200776353 rs62178345 T G 3652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.218;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.945;SOR=0.637 GT:AD:DP:GQ:PL 0/1:127,140:267:99:3681,0,3010 2 200820505 rs281766 T G 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.649;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.68;ReadPosRankSum=1.239;SOR=0.787 GT:AD:DP:GQ:PL 0/1:45,58:103:99:1643,0,1170 2 201437214 rs17532679 A G 1139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.979;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=0.08;SOR=0.699 GT:AD:DP:GQ:PL 0/1:45,43:88:99:1168,0,1197 2 201437334 rs12052989 T C 3614.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3643,354,0 2 201460104 rs7597590 A G 930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=0.395;SOR=0.754 GT:AD:DP:GQ:PL 0/1:67,44:111:99:959,0,1576 2 201468732 rs2293525 C G 546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-2.209;SOR=0.619 GT:AD:DP:GQ:PL 0/1:26,22:48:99:575,0,697 2 201515939 rs868810 T C 3897.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.205 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3926,396,0 2 201526330 rs55754655 A G 429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.115;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.14;ReadPosRankSum=1.557;SOR=0.576 GT:AD:DP:GQ:PL 0/1:47,23:70:99:458,0,1037 2 201526368 rs41270243 C G 320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.63;ReadPosRankSum=-1.477;SOR=0.866 GT:AD:DP:GQ:PL 0/1:39,18:57:99:349,0,975 2 201768238 rs7917 C T 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.42;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=0.098;SOR=0.73 GT:AD:DP:GQ:PL 0/1:39,46:85:99:1194,0,1059 2 201778717 rs201460825 T TA 83.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.04;ReadPosRankSum=0.009;SOR=0.603 GT:AD:DP:GQ:PL 0/1:31,10:53:99:121,0,638 2 201785837 rs2307362 G A 565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=0.367;SOR=0.392 GT:AD:DP:GQ:PL 0/1:30,26:56:99:594,0,836 2 201950166 . C CT 42.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.59;ReadPosRankSum=-0.408;SOR=0.873 GT:AD:DP:GQ:PL 0/1:61,12:75:80:80,0,1275 2 202025621 rs1594 A G 908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=1.013;SOR=0.437 GT:AD:DP:GQ:PL 0/1:38,36:74:99:937,0,929 2 202050677 rs3900115 A G 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=7.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.869;SOR=0.582 GT:AD:DP:GQ:PL 0/1:50,54:104:99:1433,0,1384 2 202082459 rs13006529 T A 1606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.484;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.542;SOR=0.49 GT:AD:DP:GQ:PL 0/1:68,66:134:99:1635,0,1563 2 202122995 rs3769823 A G 4262.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4291,402,0 2 202149696 rs1045487 G A 1564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.198;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-0.029;SOR=0.626 GT:AD:DP:GQ:PL 0/1:89,69:158:99:1593,0,2187 2 202151163 rs3769818 A G 3406.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3435,329,0 2 202215492 rs13014235 C G 3032.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=28.08;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3061,322,0 2 202245944 rs3832088 TAA T 5536.73 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.29;SOR=1.397 GT:AD:DP:GQ:PL 1/1:0,125:127:99:5574,382,0 2 202245955 rs72937131 A G 5597.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.08;SOR=1.397 GT:AD:DP:GQ:PL 1/1:0,127:127:99:5626,382,0 2 202260049 rs2256584 G A 2622.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2651,249,0 2 202264156 rs13022344 C T 2799.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2828,291,0 2 202337730 rs1019299 A G 4440.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4469,444,0 2 202342402 rs12990557 G T 3986.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.56;QD=28.48;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4015,419,0 2 202357949 rs2714482 A C 3570.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.832;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.17;ReadPosRankSum=-0.499;SOR=0.391 GT:AD:DP:GQ:PL 1/1:1,110:111:99:3599,322,0 2 202469361 rs12474206 C T 3146.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3175,327,0 2 202528830 rs74887695 A AT 2707.73 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2745,270,0 2 202557702 rs6725443 C T 4987.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5016,488,0 2 202575821 rs3219168 G A 1588.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=1.238 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1617,171,0 2 202598113 rs2276615 C T 4050.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4079,434,0 2 202625615 rs3219156 C T 4925.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4954,491,0 2 202712095 rs917958 A C 3425.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.972;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.79;ReadPosRankSum=-0.675;SOR=0.377 GT:AD:DP:GQ:PL 1/1:1,118:119:99:3454,345,0 2 202939654 rs10221698 T C 5665.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5694,558,0 2 202962310 rs11288166 CT C 552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.358;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=6.11;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.504;QD=6.07;ReadPosRankSum=-1.827;SOR=1.266 GT:AD:DP:GQ:PL 0/1:47,44:133:99:581,0,1043 2 202964380 rs2882486 G A 1474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.947;SOR=0.827 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1503,0,1863 2 202964517 rs10197514 G C 1579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-0.382;SOR=0.536 GT:AD:DP:GQ:PL 0/1:56,63:119:99:1608,0,1620 2 202964528 rs2350722 T C 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.753;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-1.044;SOR=0.918 GT:AD:DP:GQ:PL 0/1:58,51:109:99:1380,0,1499 2 203693559 rs4675296 C G 2527.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.409 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2556,234,0 2 203747522 rs72934751 A G 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.034;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.398;SOR=0.443 GT:AD:DP:GQ:PL 0/1:53,51:104:99:1252,0,1230 2 203765756 rs35212307 T C 1377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.128;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-0.825;SOR=0.487 GT:AD:DP:GQ:PL 0/1:51,59:110:99:1406,0,1110 2 203846817 rs72932557 A T 1258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.595;SOR=0.776 GT:AD:DP:GQ:PL 0/1:61,57:120:99:1287,0,1401 2 203990789 rs72934556 T G 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.021;SOR=0.528 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1158,0,1186 2 203996870 rs6748898 A G 1689.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.49;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1718,147,0 2 204062061 rs4675323 A G 2600.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2629,273,0 2 204116690 rs2043449 C T 2833.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2862,302,0 2 204154552 rs1048013 C T 1061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.796;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.611;SOR=0.639 GT:AD:DP:GQ:PL 0/1:40,49:89:99:1090,0,865 2 204305093 rs3814365 T C 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=0.743;SOR=0.483 GT:AD:DP:GQ:PL 0/1:59,74:133:99:1884,0,1506 2 204322298 rs2469953 T C 660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.549;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=-1.194;SOR=0.635 GT:AD:DP:GQ:PL 0/1:50,33:83:99:689,0,1123 2 204732714 rs231775 A G 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.285;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.61;ReadPosRankSum=-0.364;SOR=0.686 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1694,0,1119 2 205912403 rs1510765 T C 994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-2.993;SOR=0.821 GT:AD:DP:GQ:PL 0/1:58,47:105:99:1023,0,1423 2 205969220 rs2289025 G A 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.502;SOR=0.93 GT:AD:DP:GQ:PL 0/1:40,38:78:99:838,0,978 2 205986321 rs2289023 A G 1203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.253;SOR=0.51 GT:AD:DP:GQ:PL 0/1:41,47:88:99:1232,0,1063 2 205990353 rs2276676 C T 1831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=1.039;SOR=0.688 GT:AD:DP:GQ:PL 0/1:95,84:179:99:1860,0,2283 2 206036918 rs736320 C T 1459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.788;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=1.109;SOR=0.666 GT:AD:DP:GQ:PL 0/1:53,61:114:99:1488,0,1429 2 206364737 rs10197347 T C 2294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.127;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=1.127;SOR=0.775 GT:AD:DP:GQ:PL 0/1:85,90:175:99:2323,0,2115 2 206418032 rs6730102 G A 2500.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2529,202,0 2 206480486 rs56272619 T C 3628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.277;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=-0.749;SOR=0.51 GT:AD:DP:GQ:PL 0/1:111,146:257:99:3657,0,2630 2 206562250 rs849558 C T 3257.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=1.588 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3286,331,0 2 206581033 rs849541 G A 5238.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5267,533,0 2 206592695 rs849526 T C 1814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.047;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=1.1;SOR=0.741 GT:AD:DP:GQ:PL 0/1:75,81:156:99:1843,0,1537 2 206608039 rs849568 T C 7223.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7252,731,0 2 206641260 rs200540514 C T 2564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.098;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=13.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-1.426;SOR=1.188 GT:AD:DP:GQ:PL 0/1:123,108:231:99:2593,0,3463 2 206874339 rs817991 G A 5539.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5568,563,0 2 206911228 rs2909111 G A 1639.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.53;QD=26.88;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1668,182,0 2 206921451 rs818009 G A 5501.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5530,540,0 2 207169731 rs10932150 G A 7830.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7859,776,0 2 207172627 rs7582864 A G 6327.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6356,597,0 2 207174316 rs3732084 T C 9670.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9699,947,0 2 207621759 rs1990849 A G 3423.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=1.295 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3452,331,0 2 207820276 rs13420911 G A 704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.333;SOR=0.906 GT:AD:DP:GQ:PL 0/1:37,34:71:99:733,0,864 2 207824384 rs11903403 T G 432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.85;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-0.543;SOR=0.606 GT:AD:DP:GQ:PL 0/1:27,23:50:99:461,0,665 2 207825656 rs13397039 A T 881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=0.723;SOR=0.563 GT:AD:DP:GQ:PL 0/1:29,35:64:99:910,0,670 2 207988613 rs2700166 C T 7250.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=30.21;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7279,718,0 2 207998800 rs2284934 C T 3176.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3205,329,0 2 208477852 rs2551949 G A 4287.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4316,443,0 2 208477956 rs2709416 C T 3736.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3765,366,0 2 208478055 rs17520056 A G 1674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.522;SOR=0.868 GT:AD:DP:GQ:PL 0/1:72,69:141:99:1703,0,1825 2 208632093 rs3731567 G A 1861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.111;SOR=0.685 GT:AD:DP:GQ:PL 0/1:116,74:190:99:1890,0,3197 2 208633413 rs4675711 T C 4467.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4496,449,0 2 208811097 rs10932215 C T 3229.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3258,330,0 2 208841964 rs4441448 A G 7988.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,260:260:99:8017,779,0 2 208986385 rs2305429 A G 5393.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.423 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5422,509,0 2 208986637 rs2305430 T C 7347.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7376,751,0 2 208989037 rs2242074 A G 9644.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.83;QD=30.72;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9673,940,0 2 209007559 rs796287 T G 6381.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6410,641,0 2 209010558 rs2854723 A G 12610.8 PASS AC=2;AF=1;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=28.79;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,438:438:99:12639,1310,0 2 209035658 rs6748431 C T 2468.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2497,254,0 2 209036712 rs10804166 T C 3646.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3675,374,0 2 209036778 rs6435421 A G 3325.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.71;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3354,359,0 2 209101905 rs57383668 GA G 1003.73 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=24.48;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1041,123,0 2 209184980 rs10932258 G A 1245.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1274,120,0 2 209184999 rs10932259 C T 1608.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1637,156,0 2 209190330 rs2363468 T C 6506.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6535,617,0 2 209190519 rs893254 A T 8949.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.2;SOR=0.755 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,198:198:99:1|1:209190519_A_T:8978,614,0 2 209190528 rs893253 C G 8937.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.81;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,204:204:99:1|1:209190519_A_T:8966,614,0 2 209191082 rs1529979 C A 5342.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5371,522,0 2 209191099 rs1529978 T C 5824.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5853,585,0 2 209209827 rs2304544 G A 1209.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=2.247 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1238,123,0 2 209212707 rs2304545 G A 4116.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4145,429,0 2 209214770 rs2118297 A G 2010.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2039,209,0 2 209215586 rs994697 A G 7022.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7051,719,0 2 209358027 rs3820900 C T 5860.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=1.399 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5889,578,0 2 210517915 rs2271252 T C 1725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.454;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=1.42;SOR=0.733 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1754,0,1574 2 210557380 rs6720659 C T 1026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.29;SOR=0.586 GT:AD:DP:GQ:PL 0/1:61,44:105:99:1055,0,1662 2 210557542 rs741007 G A 1723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=1.018;SOR=0.839 GT:AD:DP:GQ:PL 0/1:85,76:161:99:1752,0,2191 2 210558162 rs741006 G A 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-0.341;SOR=0.672 GT:AD:DP:GQ:PL 0/1:84,77:161:99:1977,0,2204 2 210559960 rs2239672 G T 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.903;SOR=0.856 GT:AD:DP:GQ:PL 0/1:86,86:172:99:2192,0,2190 2 210565069 . A AAAATAAGT 500.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=1.085;SOR=1.286 GT:AD:DP:GQ:PL 0/1:30,15:45:99:538,0,2007 2 210705348 rs10178675 C G 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.185;SOR=0.935 GT:AD:DP:GQ:PL 0/1:67,66:133:99:1570,0,1668 2 210714162 rs2191906 A G 1514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.65;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=0.115;SOR=0.768 GT:AD:DP:GQ:PL 0/1:55,61:116:99:1543,0,1365 2 210745681 rs2370838 C A 3572.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=1.316 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3601,360,0 2 210843383 rs2075117 G A 3114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=2.602;SOR=0.704 GT:AD:DP:GQ:PL 0/1:109,138:247:99:3143,0,2612 2 211319824 rs2287432 T C 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.326;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.331;SOR=0.651 GT:AD:DP:GQ:PL 0/1:43,33:76:99:841,0,1077 2 211320041 rs59908560 G GAA,GAAA 2084.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.26;MQRankSum=0.239;QD=37.23;ReadPosRankSum=-0.562;SOR=0.758 GT:AD:DP:GQ:PL 1/2:1,21,34:71:99:2122,794,672,440,0,377 2 211456637 rs1047883 A G 2250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.1;ReadPosRankSum=0.042;SOR=0.627 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,59:112:99:0|1:211456637_A_G:2279,0,2784 2 211456639 rs2229589 C T 2250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.28;ReadPosRankSum=0.475;SOR=0.682 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,57:111:99:0|1:211456637_A_G:2279,0,2784 2 211473070 rs2287600 G T 924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=1.451;SOR=0.496 GT:AD:DP:GQ:PL 0/1:35,42:77:99:953,0,846 2 211481257 rs2287599 C G 609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-0.736;SOR=0.616 GT:AD:DP:GQ:PL 0/1:43,29:72:99:638,0,1094 2 211527827 rs5838215 GT G 1345.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.179;QD=12.46;ReadPosRankSum=-0.09;SOR=0.8 GT:AD:DP:GQ:PL 0/1:39,69:126:99:1383,0,750 2 212251864 rs3748962 T C 3100.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3129,294,0 2 212543924 rs4673628 A G 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.798;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.788;SOR=0.353 GT:AD:DP:GQ:PL 0/1:49,39:88:99:1031,0,1196 2 214012508 rs6709554 C T 221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.41;ReadPosRankSum=-0.417;SOR=0.631 GT:AD:DP:GQ:PL 0/1:29,12:41:99:250,0,975 2 214174767 rs10498003 C T 328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.162;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.65;ReadPosRankSum=-0.147;SOR=1.292 GT:AD:DP:GQ:PL 0/1:27,16:43:99:357,0,625 2 214182100 rs10183630 A T 1300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=-0.177;SOR=0.686 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1329,0,986 2 214228792 rs12469417 C T 1038.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.07;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1067,111,0 2 214794743 rs12623569 A C 4203.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.924;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.4;ReadPosRankSum=-0.742;SOR=0.707 GT:AD:DP:GQ:PL 1/1:2,141:143:99:4232,379,0 2 215632192 rs5031011 G A 1026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.015;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=-0.529;SOR=0.901 GT:AD:DP:GQ:PL 0/1:70,49:119:99:1055,0,1586 2 215632255 rs2070094 C T 1487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.106;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=5.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=1.807;SOR=0.811 GT:AD:DP:GQ:PL 0/1:74,65:139:99:1516,0,1810 2 215632256 rs2070093 A G 5190.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.08;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,140:140:99:5219,421,0 2 215634055 rs6704780 C T 754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=1.29;SOR=0.923 GT:AD:DP:GQ:PL 0/1:45,34:79:99:783,0,1011 2 215645464 rs2229571 C G 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.181;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=0.09;SOR=0.623 GT:AD:DP:GQ:PL 0/1:89,104:193:99:2807,0,1980 2 215645545 rs2070096 C G 2235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.434;SOR=0.797 GT:AD:DP:GQ:PL 0/1:118,99:217:99:2264,0,2995 2 215657182 rs56130510 TA T 777.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.009;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=1.203;SOR=1.197 GT:AD:DP:GQ:PL 0/1:33,42:100:99:815,0,605 2 215812297 rs2274412 G A 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.912;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=0.557;SOR=0.912 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1655,0,1416 2 215818724 rs143387234 G A 2186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-3.189;SOR=0.684 GT:AD:DP:GQ:PL 0/1:84,90:174:99:2215,0,2139 2 215820013 rs10498027 G A 1523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-1.581;SOR=0.869 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1552,0,1440 2 215851246 rs7559069 A G 2553.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.6;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2582,228,0 2 215876166 rs7560008 A T 2333.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.488 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2362,225,0 2 216190020 rs2372536 C G 1607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.106;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.46;ReadPosRankSum=4.913;SOR=0.791 GT:AD:DP:GQ:PL 0/1:37,67:104:99:1636,0,761 2 216190691 rs2177737 A C 3563.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=1.49 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3592,344,0 2 216229692 rs11651 A G 927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=1.98;SOR=0.656 GT:AD:DP:GQ:PL 0/1:35,41:76:99:956,0,798 2 216235089 rs1250209 C T 3674.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3703,378,0 2 216240126 rs71044591 AAC A 1085.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.587;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.2;ReadPosRankSum=0.44;SOR=0.458 GT:AD:DP:GQ:PL 0/1:35,32:67:99:1123,0,1372 2 216242917 rs1132741 T A 486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=0.62;SOR=0.602 GT:AD:DP:GQ:PL 0/1:29,27:56:99:515,0,630 2 216249587 rs13652 C T 1986.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2015,210,0 2 216251697 rs35343655 G A 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=0.915;SOR=0.43 GT:AD:DP:GQ:PL 0/1:59,44:103:99:949,0,1457 2 216253039 rs1250215 G C 1031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.537;SOR=1.132 GT:AD:DP:GQ:PL 0/1:42,47:89:99:1060,0,937 2 216269095 rs13306359 C T 580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=-0.448;SOR=0.723 GT:AD:DP:GQ:PL 0/1:51,25:76:99:609,0,1532 2 216269209 rs1053238 T G 1823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.522;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=0.712;SOR=0.774 GT:AD:DP:GQ:PL 0/1:90,83:173:99:1852,0,2038 2 216269254 rs7589580 T G 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.207;SOR=0.607 GT:AD:DP:GQ:PL 0/1:87,87:174:99:2035,0,2064 2 216272819 rs7570208 C G 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.13;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.479;SOR=0.996 GT:AD:DP:GQ:PL 0/1:56,43:99:99:1201,0,1372 2 216272900 rs2577301 T G 4079.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4108,393,0 2 216274853 rs5838510 A AAC 680.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.27;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.154;SOR=0.501 GT:AD:DP:GQ:PL 0/1:34,27:66:99:718,0,1022 2 216298084 rs2289202 G A 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-2.264;SOR=0.526 GT:AD:DP:GQ:PL 0/1:65,75:140:99:1864,0,1538 2 216300482 rs1250259 T A 2700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.49;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=0.463;SOR=0.837 GT:AD:DP:GQ:PL 0/1:131,118:249:99:2729,0,3171 2 216878008 rs1864253 C G 4315.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.872;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.02;ReadPosRankSum=-0.95;SOR=0.83 GT:AD:DP:GQ:PL 1/1:2,152:156:99:4344,371,0 2 216904019 rs9288513 A T 586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-0.067;SOR=0.529 GT:AD:DP:GQ:PL 0/1:31,30:61:99:615,0,682 2 216923679 rs1429148 C T 184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.294;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.6;ReadPosRankSum=0.028;SOR=0.859 GT:AD:DP:GQ:PL 0/1:22,11:33:99:213,0,526 2 217012901 rs207906 A G 5978.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.81;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6007,667,0 2 217148417 rs876771 C A 2333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.283;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-1.304;SOR=0.566 GT:AD:DP:GQ:PL 0/1:94,100:194:99:2362,0,1953 2 217498290 rs11282764 C CGCCGCTGCT 2380.73 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.64;QD=46.68;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,51:51:99:2418,162,0 2 217541582 rs2160549 T C 4684.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4713,479,0 2 218695102 rs3796028 G A 4555.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4584,459,0 2 218745685 rs10199795 G A 1336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.425;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.358;SOR=0.796 GT:AD:DP:GQ:PL 0/1:76,58:134:99:1365,0,1801 2 218750453 rs35040165 A AG 1797.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.5;ReadPosRankSum=0.142;SOR=0.575 GT:AD:DP:GQ:PL 0/1:62,62:124:99:1835,0,1838 2 219000310 rs2230054 C T 10470.8 PASS AC=2;AF=1;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.58;QD=29.33;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,357:357:99:10499,1064,0 2 219103580 rs10169718 A G 1197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.726;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.97;ReadPosRankSum=-0.996;SOR=0.372 GT:AD:DP:GQ:PL 0/1:34,46:80:99:1226,0,830 2 219140288 rs2292550 G C 2424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.272;SOR=0.509 GT:AD:DP:GQ:PL 0/1:113,107:220:99:2453,0,2615 2 219143229 rs2292551 G A 1259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.246;SOR=0.609 GT:AD:DP:GQ:PL 0/1:65,53:118:99:1288,0,1660 2 219144089 rs12987180 G A 1252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-1.348;SOR=0.683 GT:AD:DP:GQ:PL 0/1:47,56:103:99:1281,0,1105 2 219144815 rs2045435 T C 3295.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3324,345,0 2 219146803 rs2292553 G A 2429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=6.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.207;SOR=0.467 GT:AD:DP:GQ:PL 0/1:136,105:241:99:2458,0,3372 2 219146868 rs2292554 T C 3606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.4;ReadPosRankSum=1.355;SOR=0.847 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,96:161:99:0|1:219146868_T_C:3635,0,2302 2 219146882 rs2292555 G C 3258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.28;ReadPosRankSum=1.482;SOR=0.751 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,83:140:99:0|1:219146868_T_C:3287,0,2161 2 219231807 rs3845833 C T 2846.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2875,306,0 2 219249013 rs2276631 C T 2353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=1.759;SOR=0.772 GT:AD:DP:GQ:PL 0/1:111,105:216:99:2382,0,2799 2 219250003 rs3731865 G C 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.37;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.487;SOR=0.733 GT:AD:DP:GQ:PL 0/1:94,76:170:99:1813,0,2505 2 219254622 rs2695342 A G 5101.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=1.001 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5130,528,0 2 219257688 rs2045433 T C 3896.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.47;SOR=1.59 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3925,360,0 2 219266423 rs2227251 C A 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.359;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.357;SOR=0.817 GT:AD:DP:GQ:PL 0/1:103,83:186:99:1975,0,2459 2 219267781 rs2227255 C T 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.76;ReadPosRankSum=0.527;SOR=0.786 GT:AD:DP:GQ:PL 0/1:90,57:147:99:1169,0,2265 2 219319657 rs6436058 A G 5847.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5876,582,0 2 219480804 rs485765 G C 2468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=1.003;SOR=0.577 GT:AD:DP:GQ:PL 0/1:114,115:229:99:2497,0,2531 2 219492924 rs612874 T C 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.471;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-1.354;SOR=0.852 GT:AD:DP:GQ:PL 0/1:87,96:183:99:2347,0,1976 2 219497048 rs3731869 T G 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.277;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.367;SOR=0.699 GT:AD:DP:GQ:PL 0/1:72,79:151:99:1934,0,1656 2 219501133 rs2278530 G A 2577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=4.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=0.609;SOR=0.974 GT:AD:DP:GQ:PL 0/1:121,106:227:99:2606,0,3105 2 219503113 rs1803383 C T 4161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=0.457;SOR=0.618 GT:AD:DP:GQ:PL 0/1:132,165:297:99:4190,0,3430 2 219507302 rs3821033 C T 3141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.845;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=0.317;SOR=0.57 GT:AD:DP:GQ:PL 0/1:190,141:331:99:3170,0,5147 2 219508263 rs3770212 G T 4637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=0.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-1.119;SOR=0.723 GT:AD:DP:GQ:PL 0/1:163,199:362:99:4666,0,3972 2 219508988 rs3770214 T C 7336.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7365,693,0 2 219509618 rs2230115 C A 3503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.659;SOR=0.785 GT:AD:DP:GQ:PL 0/1:156,146:302:99:3532,0,4049 2 219520895 rs3731872 T C 2368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.032;SOR=0.736 GT:AD:DP:GQ:PL 0/1:128,104:232:99:2397,0,3225 2 219527712 rs33946522 C T 2079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.243;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.265;SOR=0.752 GT:AD:DP:GQ:PL 0/1:97,89:186:99:2108,0,2274 2 219527866 rs35843327 T C 3021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.951;QD=12.8;ReadPosRankSum=1.108;SOR=0.587 GT:AD:DP:GQ:PL 0/1:111,125:236:99:3050,0,2730 2 219528995 rs13022721 T C 2867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.83;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=3.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.219;SOR=0.511 GT:AD:DP:GQ:PL 0/1:135,115:250:99:2896,0,3330 2 219529247 rs2303562 A C 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.261;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.466;SOR=0.439 GT:AD:DP:GQ:PL 0/1:62,70:132:99:1682,0,1597 2 219529881 rs2303564 G A 1212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.579;SOR=0.763 GT:AD:DP:GQ:PL 0/1:69,61:130:99:1241,0,1499 2 219533378 rs16859170 T C 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.056;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.068;SOR=0.686 GT:AD:DP:GQ:PL 0/1:61,52:113:99:1210,0,1327 2 219544388 rs1863703 A G 3442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.573;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.602;SOR=0.662 GT:AD:DP:GQ:PL 0/1:131,146:277:99:3471,0,2967 2 219545309 rs2303565 T C 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-0.174;SOR=1.099 GT:AD:DP:GQ:PL 0/1:46,45:91:99:1105,0,1110 2 219553468 rs16859180 C T 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.755;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=4.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=0.381;SOR=1.056 GT:AD:DP:GQ:PL 0/1:130,81:211:99:1926,0,3241 2 219555262 rs1344642 G A 1136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.668;SOR=0.911 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1165,0,1216 2 219563602 rs12993599 G A 4296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.286;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.933;SOR=0.664 GT:AD:DP:GQ:PL 0/1:165,183:348:99:4325,0,3668 2 219602499 rs3731877 G C 3164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.014;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=0.228;SOR=0.752 GT:AD:DP:GQ:PL 0/1:154,125:279:99:3193,0,4148 2 219602819 rs3731876 G A 2652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.156;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=4.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-1.275;SOR=0.49 GT:AD:DP:GQ:PL 0/1:156,108:264:99:2681,0,3859 2 219610433 rs586194 A G 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.177;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=1.499;SOR=0.485 GT:AD:DP:GQ:PL 0/1:90,54:144:99:1129,0,1983 2 219692790 rs5838710 A AG 5436.73 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=33.35;SOR=1.324 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5474,493,0 2 219867752 rs202093549 C T 2155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.166;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.244;SOR=0.668 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2184,0,2615 2 219895548 rs56411706 C A 2824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=-0.059;SOR=0.663 GT:AD:DP:GQ:PL 0/1:91,111:202:99:2853,0,2256 2 219900068 rs17852959 C T 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.02;SOR=0.683 GT:AD:DP:GQ:PL 0/1:70,67:137:99:1694,0,1782 2 219903258 rs6736922 T G 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.308;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.616;SOR=0.83 GT:AD:DP:GQ:PL 0/1:101,73:174:99:1859,0,2625 2 219903723 rs4674354 C T 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=1.246;QD=13.72;ReadPosRankSum=0.839;SOR=0.711 GT:AD:DP:GQ:PL 0/1:49,74:123:99:1716,0,1135 2 219905247 rs3736403 T C 508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.205;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-1.333;SOR=0.58 GT:AD:DP:GQ:PL 0/1:33,23:56:99:537,0,755 2 219920037 rs394452 A G 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=-1.652;SOR=0.507 GT:AD:DP:GQ:PL 0/1:82,88:170:99:2338,0,2196 2 219920565 rs3731878 C T 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.638;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-1.449;SOR=0.565 GT:AD:DP:GQ:PL 0/1:117,85:202:99:1972,0,2793 2 220022176 rs6436120 C T 3441.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=1.437 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3470,351,0 2 220037393 rs4674361 A G 8116.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8145,829,0 2 220037444 rs17655123 G A 3283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.137;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=1.473;SOR=0.824 GT:AD:DP:GQ:PL 0/1:159,135:294:99:3312,0,3992 2 220046840 rs3210652 G A 3183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.416;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=5.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.981;SOR=0.442 GT:AD:DP:GQ:PL 0/1:122,122:244:99:3212,0,3072 2 220072766 rs4674366 G T 5587.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5616,561,0 2 220078564 rs149363094 G C 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-1;SOR=0.735 GT:AD:DP:GQ:PL 0/1:135,100:235:99:2357,0,3347 2 220083279 rs1109866 C T 9117.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9146,881,0 2 220085845 rs2276633 A G 8372.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.175 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8401,839,0 2 220089590 rs3216709 T TG 5871.73 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.68;QD=32.09;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5909,553,0 2 220113242 rs7601549 T G 6760.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.66;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6789,621,0 2 220145286 rs2276638 C T 941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.416;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.036;SOR=0.523 GT:AD:DP:GQ:PL 0/1:42,42:84:99:970,0,938 2 220146651 rs3731897 G A 3058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-1.011;SOR=0.618 GT:AD:DP:GQ:PL 0/1:139,126:265:99:3087,0,3774 2 220147847 rs3821039 G A 2216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.04;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.72;ReadPosRankSum=1.619;SOR=0.617 GT:AD:DP:GQ:PL 0/1:47,94:141:99:2245,0,1105 2 220197321 rs2385405 C T 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.692;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.502;SOR=0.749 GT:AD:DP:GQ:PL 0/1:85,81:166:99:2123,0,2133 2 220197388 rs2385404 C A 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=10.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-1.391;SOR=0.868 GT:AD:DP:GQ:PL 0/1:91,59:150:99:1327,0,2521 2 220197424 rs2385403 C T 775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=35.779;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=-1.461;SOR=1.794 GT:AD:DP:GQ:PL 0/1:75,42:117:99:804,0,2045 2 220239561 rs3731905 C G 2266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.882;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.052;SOR=0.616 GT:AD:DP:GQ:PL 0/1:83,79:162:99:2295,0,2024 2 220250147 rs907679 A G 3105.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3134,330,0 2 220250432 rs72963541 T G 1586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-1.647;SOR=0.49 GT:AD:DP:GQ:PL 0/1:61,66:127:99:1615,0,1489 2 220250826 rs2271456 G A 6619.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.1 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6648,639,0 2 220283259 rs1318299 A G 8735.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8764,879,0 2 220283277 rs2017800 T C 9680.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.149 GT:AD:DP:GQ:PL 1/1:0,309:309:99:9709,926,0 2 220285309 rs1058261 C T 2415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-3.481;SOR=0.677 GT:AD:DP:GQ:PL 0/1:110,109:219:99:2444,0,2459 2 220285666 rs12920 G C 2320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.232;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.333;SOR=0.545 GT:AD:DP:GQ:PL 0/1:146,101:247:99:2349,0,3618 2 220286142 rs1058284 G A 2259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.496;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.902;SOR=0.682 GT:AD:DP:GQ:PL 0/1:115,106:221:99:2288,0,2499 2 220315970 rs10932806 G A 7048.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7077,742,0 2 220330804 rs1567487 T C 5449.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.25;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5478,506,0 2 220333950 rs10167209 T C 5255.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5284,492,0 2 220362899 rs2029251 C G 7995.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,252:252:99:8024,756,0 2 220371035 rs1046474 C G 4937.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4966,501,0 2 220379560 rs3731909 C G 7689.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7718,756,0 2 220404381 rs1976616 A G 7378.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7407,714,0 2 220404648 rs1043833 C T 7496.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,261:263:99:7525,781,0 2 220404726 rs1043832 G A 7654.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7683,756,0 2 220404877 rs200411864 C T 3124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.398;SOR=0.645 GT:AD:DP:GQ:PL 0/1:125,132:257:99:3153,0,3132 2 220405230 rs6436154 G A 6807.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6836,685,0 2 220405321 rs6436155 T C 4585.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.171 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4614,465,0 2 220412256 rs8179770 T C 5561.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.287 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5590,551,0 2 220414016 rs6436156 C T 13291.8 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.45;SOR=0.769 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,299:299:99:1|1:220414016_C_T:13320,909,0 2 220414019 rs13023533 T C 13340.8 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.92;SOR=0.799 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,297:297:99:1|1:220414016_C_T:13369,915,0 2 220416942 rs34490902 G C 3786.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3815,372,0 2 220417266 rs59332477 C T 4135.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.431 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4164,419,0 2 220419236 rs10932813 T C 5657.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.018 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5686,567,0 2 220419339 rs10932814 T C 6491.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6520,651,0 2 220420785 rs3087971 G A 8149.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8178,765,0 2 220420956 rs10932816 A G 6688.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6717,656,0 2 220422774 rs2278201 A G 8954.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8983,873,0 2 220427347 rs10804275 G T 6514.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.72;QD=29.21;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6543,668,0 2 220427395 rs3183099 G A 4804.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=29.3;SOR=1.158 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4833,490,0 2 220430203 rs1039898 C T 4645.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=1.088 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4674,476,0 2 220432709 rs2292360 A T 2326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.608;SOR=0.66 GT:AD:DP:GQ:PL 0/1:134,109:243:99:2355,0,3412 2 220435034 rs10180675 A G 8184.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,257:257:99:8213,771,0 2 220435375 rs1061399 G A 2209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.598;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.034;SOR=0.644 GT:AD:DP:GQ:PL 0/1:76,84:160:99:2238,0,2309 2 220437081 rs35118453 C T 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=1.543;SOR=0.606 GT:AD:DP:GQ:PL 0/1:74,57:131:99:1220,0,2011 2 220439678 rs12720063 C T 3464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.109;SOR=0.638 GT:AD:DP:GQ:PL 0/1:140,140:280:99:3493,0,3617 2 220462640 rs681747 G T 3259.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3288,327,0 2 220466344 rs11405075 G GT,GTT 1739.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=3.116;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=19.12;ReadPosRankSum=1.31;SOR=0.283 GT:AD:DP:GQ:PL 1/2:9,67,15:95:99:1777,190,109,1165,0,1302 2 220476443 rs627530 C T 8117.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.24;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,298:298:99:8146,887,0 2 220494118 rs597306 A C 4224.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.04;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.08;ReadPosRankSum=-0.236;SOR=0.539 GT:AD:DP:GQ:PL 1/1:3,159:162:99:4253,396,0 2 220500423 rs589767 A G 9940.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.39;SOR=1.137 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,219:219:99:1|1:220500423_A_G:9969,674,0 2 220500426 rs639214 A G 9976.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.54;SOR=1.089 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,224:224:99:1|1:220500423_A_G:10005,678,0 2 220502367 rs635311 A C 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.316;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.108;SOR=0.752 GT:AD:DP:GQ:PL 0/1:73,61:134:99:1583,0,1767 2 220505265 rs684428 T C 1877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.112;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.997;SOR=0.664 GT:AD:DP:GQ:PL 0/1:121,76:197:99:1906,0,3003 2 222307534 rs2288628 G T 1096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.75;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=0.465;SOR=0.407 GT:AD:DP:GQ:PL 0/1:47,47:94:99:1125,0,1284 2 223161889 rs12623857 A G 7286.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7315,742,0 2 223423362 rs4674664 A G 6417.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6446,629,0 2 223436607 rs7185 C T 3453.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3482,332,0 2 223781017 rs60362808 AT A 1116.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=1.2;QD=13.45;ReadPosRankSum=-0.777;SOR=1.03 GT:AD:DP:GQ:PL 0/1:27,56:86:99:1154,0,539 2 223787559 rs11891410 G A 1673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=0.069;SOR=0.698 GT:AD:DP:GQ:PL 0/1:50,70:120:99:1702,0,1222 2 223917629 rs3795886 C T 6872.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6901,717,0 2 223917812 rs10201907 T C 8932.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,304:304:99:8961,912,0 2 223917983 rs12621643 T G 6060.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6089,582,0 2 223918080 rs10189762 C G 3842.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3871,392,0 2 224760359 rs150347314 TGA T 81.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.46;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=2.805;QD=0.41;ReadPosRankSum=0.451;SOR=0.874 GT:AD:DP:GQ:PL 0/1:179,19:202:99:110,0,6102 2 224765894 rs604990 G A 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.572;QD=13.83;ReadPosRankSum=-0.324;SOR=0.548 GT:AD:DP:GQ:PL 0/1:80,99:179:99:2503,0,2036 2 225244888 rs3738954 A G 1472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.155;SOR=0.622 GT:AD:DP:GQ:PL 0/1:58,55:113:99:1501,0,1620 2 225244923 rs3738953 A G 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.471;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.96;ReadPosRankSum=0.369;SOR=0.726 GT:AD:DP:GQ:PL 0/1:39,40:79:99:1289,0,1098 2 225346646 rs2070127 T C 497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.042;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.03;ReadPosRankSum=1.309;SOR=0.648 GT:AD:DP:GQ:PL 0/1:38,24:62:99:526,0,972 2 225362478 rs3738952 C T 785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.979;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=0.034;SOR=0.54 GT:AD:DP:GQ:PL 0/1:46,36:82:99:814,0,1023 2 225367669 rs3754629 C T 670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.677;SOR=0.593 GT:AD:DP:GQ:PL 0/1:36,30:66:99:699,0,875 2 226273689 rs2048936 T C 3512.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3541,377,0 2 226447735 rs3828256 C T 2965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.496;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=2.05;SOR=0.855 GT:AD:DP:GQ:PL 0/1:113,116:229:99:2994,0,2755 2 226491770 rs3748993 A C 3996.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4025,417,0 2 227872182 rs2228557 G A 5487.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5516,553,0 2 227872995 rs2228555 T C 5867.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.34;SOR=1.543 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5896,528,0 2 227873028 rs13419076 A G 3907.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=1.812 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3936,366,0 2 227886773 rs3752895 A G 4440.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=1.195 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4469,432,0 2 227892619 rs2228556 C T 2378.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2407,237,0 2 227892720 rs2229813 C T 2215.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.27 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,76:76:99:1|1:227892720_C_T:2244,228,0 2 227896652 rs13423714 C G 2793.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2822,264,0 2 227896886 rs2229812 C T 3857.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.035;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.55;ReadPosRankSum=0;SOR=0.114 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3886,397,0 2 227896976 rs10203363 C T 3690.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3719,363,0 2 227915832 rs1800517 G A 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.669;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.95;ReadPosRankSum=0.388;SOR=0.665 GT:AD:DP:GQ:PL 0/1:121,73:194:99:1570,0,2903 2 227954599 rs2229814 G A 2747.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2776,296,0 2 228111435 rs10178458 T C 2622.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.61;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2651,284,0 2 228113175 rs6436669 A G 2906.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2935,291,0 2 228128540 rs10205042 C T 3975.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4004,402,0 2 228135631 rs28381984 C T 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=1.034;SOR=0.776 GT:AD:DP:GQ:PL 0/1:65,68:133:99:1748,0,1553 2 228159660 rs202047534 GTT G,GT 874.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.274;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.812;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=16.2;ReadPosRankSum=0.568;SOR=0.754 GT:AD:DP:GQ:PL 1/2:12,22,20:64:99:912,141,423,335,0,422 2 228173078 rs4436947 A G 3213.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3242,341,0 2 228176096 rs11286889 CT C 815.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;MQRankSum=0.327;QD=20.39;ReadPosRankSum=-0.254;SOR=1.259 GT:AD:DP:GQ:PL 1/1:2,38:44:73:853,73,0 2 228221725 rs74713223 A G 1340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.3;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=-1.424;SOR=0.515 GT:AD:DP:GQ:PL 0/1:38,56:94:99:1369,0,842 2 228230945 rs76547437 G A 793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-1.334;SOR=0.713 GT:AD:DP:GQ:PL 0/1:52,36:88:99:822,0,1392 2 228337321 rs144327481 C T 2586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.945;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.904;SOR=0.778 GT:AD:DP:GQ:PL 0/1:108,102:210:99:2615,0,2335 2 228356364 rs11289047 GT G 333.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.426;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.713;SOR=0.874 GT:AD:DP:GQ:PL 0/1:10,20:32:99:371,0,153 2 228416712 rs13426457 A G 5272.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5301,542,0 2 228476140 rs2176186 C T 1858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=0.987;SOR=0.555 GT:AD:DP:GQ:PL 0/1:63,75:138:99:1887,0,1650 2 228476253 rs2138402 C G 5145.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5174,516,0 2 228560800 rs11334205 GA G 3506.73 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=26.37;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3544,399,0 2 228783479 rs1533960 C A 691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.728;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.33;ReadPosRankSum=-0.276;SOR=0.455 GT:AD:DP:GQ:PL 0/1:49,34:83:99:720,0,1096 2 228882970 rs3828161 T C 2683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.05;SOR=0.707 GT:AD:DP:GQ:PL 0/1:87,110:197:99:2712,0,2091 2 228883721 rs3811514 T C 3113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=1.196;SOR=0.727 GT:AD:DP:GQ:PL 0/1:123,121:244:99:3142,0,3164 2 229890660 rs34351298 A G 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.394;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=1.208;SOR=0.755 GT:AD:DP:GQ:PL 0/1:107,90:197:99:2373,0,2622 2 230135711 rs67686611 G GC 4419.73 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=36.83;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:4457,361,0 2 230341979 rs146727100 AC A 885.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.059;QD=13.03;ReadPosRankSum=-0.24;SOR=0.504 GT:AD:DP:GQ:PL 0/1:35,33:68:99:923,0,1153 2 230453214 rs11458391 G GA 1163.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=4.26;MLEAC=2;MLEAF=1;MQ=60.19;MQRankSum=0.292;QD=26.45;ReadPosRankSum=-0.217;SOR=1.168 GT:AD:DP:GQ:PL 1/1:1,43:48:99:1201,120,0 2 230653669 . TA T 35.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.79;ReadPosRankSum=-1.394;SOR=0.784 GT:AD:DP:GQ:PL 0/1:36,9:49:73:73,0,856 2 230663576 rs6720868 C T 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.42;ReadPosRankSum=0.039;SOR=0.47 GT:AD:DP:GQ:PL 0/1:79,52:131:99:1000,0,2005 2 230668858 rs13018957 T C 1456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.143;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.724;SOR=0.665 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1485,0,1313 2 231036860 rs3948463 C T 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.796;SOR=0.641 GT:AD:DP:GQ:PL 0/1:38,39:77:99:841,0,893 2 231037616 rs35495464 A G 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=1.176;SOR=0.729 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1358,0,1390 2 231042276 rs1135791 A G 1325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.395;SOR=0.56 GT:AD:DP:GQ:PL 0/1:82,62:144:99:1354,0,1997 2 231050715 rs3948464 A G 2646.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=1.666 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2675,252,0 2 231072709 rs1365776 C T 1185.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1214,128,0 2 231077110 rs9061 C T 625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.141;SOR=0.458 GT:AD:DP:GQ:PL 0/1:34,29:63:99:654,0,815 2 231077676 rs11556887 G A 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.171;SOR=0.992 GT:AD:DP:GQ:PL 0/1:88,78:166:99:1796,0,2281 2 231077725 rs1129411 A G 4280.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4309,408,0 2 231101855 rs115618178 T G 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=0.252;SOR=0.556 GT:AD:DP:GQ:PL 0/1:91,58:149:99:1221,0,2249 2 231110582 rs28445040 C T 555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=0.026;SOR=0.638 GT:AD:DP:GQ:PL 0/1:29,28:57:99:584,0,661 2 231115790 rs9989746 G A 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-0.153;SOR=0.499 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1447,0,1756 2 231120255 rs55829350 CG C 4430.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.797;MLEAC=2;MLEAF=1;MQ=60.06;MQRankSum=0.157;QD=28.4;ReadPosRankSum=1.01;SOR=0.808 GT:AD:DP:GQ:PL 1/1:1,155:163:99:4468,457,0 2 231149108 rs4972946 G A 4215.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.74;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4244,455,0 2 231157512 rs6710297 A G 2857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.022;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-1.944;SOR=0.61 GT:AD:DP:GQ:PL 0/1:114,113:227:99:2886,0,2749 2 231175549 rs200258126 T C 232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=40;MQRankSum=-0;QD=23.28;ReadPosRankSum=-0.253;SOR=0.105 GT:AD:DP:GQ:PL 0/1:2,8:10:53:261,0,53 2 231256812 rs7559665 A G 2626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.149;SOR=1.072 GT:AD:DP:GQ:PL 0/1:109,111:220:99:2655,0,2502 2 231265676 rs368551483 G A 103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.723;ClippingRankSum=0;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40.59;MQRankSum=-0.395;QD=5.19;ReadPosRankSum=0.444;SOR=1.051 GT:AD:DP:GQ:PL 0/1:15,5:20:99:132,0,431 2 231266526 rs149348058 G A 1633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.511;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.5;MQ=40.25;MQRankSum=-2.235;QD=11.75;ReadPosRankSum=-0.038;SOR=0.892 GT:AD:DP:GQ:PL 0/1:64,75:139:99:1662,0,1551 2 231331896 rs1050224 G A 1252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.916;SOR=0.799 GT:AD:DP:GQ:PL 0/1:51,56:107:99:1281,0,1196 2 231333763 rs12724 A G 329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.22;ReadPosRankSum=0;SOR=0.544 GT:AD:DP:GQ:PL 0/1:35,18:53:99:358,0,850 2 231405572 rs4973329 T G 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.358;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=7.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.74;ReadPosRankSum=-0.921;SOR=1.428 GT:AD:DP:GQ:PL 0/1:52,66:118:99:1768,0,1183 2 231406680 rs836237 T C 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.68;ReadPosRankSum=-0.429;SOR=0.75 GT:AD:DP:GQ:PL 0/1:55,92:147:99:2333,0,1087 2 231774844 rs2396777 G A 760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.04;ReadPosRankSum=0.879;SOR=0.722 GT:AD:DP:GQ:PL 0/1:87,39:126:99:789,0,2304 2 231775094 rs3749073 C A 1266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.114;SOR=0.737 GT:AD:DP:GQ:PL 0/1:65,56:121:99:1295,0,1769 2 231775297 rs1992186 T G 1932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.761;SOR=0.739 GT:AD:DP:GQ:PL 0/1:80,88:168:99:1961,0,1841 2 231861032 rs72362780 TCAGCAGCCTAGCCCTGAATCCACACCA T 6785.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.289;ClippingRankSum=0;DB;DP=424;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.5;MQ=62.26;MQRankSum=10.94;QD=16.47;ReadPosRankSum=2.935;SOR=1.039 GT:AD:DP:GQ:PL 0/1:219,193:412:99:6823,0,8270 2 231865090 rs2271376 T C 2551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.54;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=6.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-1.358;SOR=0.41 GT:AD:DP:GQ:PL 0/1:109,113:222:99:2580,0,2636 2 231865269 rs2271375 G T 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.538;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=4.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.896;SOR=0.433 GT:AD:DP:GQ:PL 0/1:91,87:178:99:2062,0,2475 2 231902316 rs186173488 T C 2060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.66;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.62;SOR=0.84 GT:AD:DP:GQ:PL 0/1:78,91:169:99:2089,0,1757 2 231902471 rs190787545 C G 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.884;SOR=0.576 GT:AD:DP:GQ:PL 0/1:52,61:113:99:1444,0,1208 2 231902926 rs116101137 C A 1290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=2.718;SOR=0.649 GT:AD:DP:GQ:PL 0/1:71,61:132:99:1319,0,1748 2 232035429 rs6749 G A 1934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=1.587;SOR=0.846 GT:AD:DP:GQ:PL 0/1:91,82:173:99:1963,0,2340 2 232072912 rs11558174 T C 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.386;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.69;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.948;QD=13.07;ReadPosRankSum=-0.635;SOR=0.895 GT:AD:DP:GQ:PL 0/1:42,49:91:99:1218,0,846 2 232087474 rs1626450 A G 2919.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.62;SOR=0.966 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,64:64:99:1|1:232087474_A_G:2948,202,0 2 232087475 rs1626451 T A 2919.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.58;SOR=0.99 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,67:67:99:1|1:232087474_A_G:2948,202,0 2 232225535 rs35889244 C CG 9641.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.827;ClippingRankSum=0;DB;DP=369;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.03;MQRankSum=0.111;QD=26.49;ReadPosRankSum=-0.588;SOR=0.715 GT:AD:DP:GQ:PL 1/1:2,362:364:99:9679,1041,0 2 232260537 rs4972989 T G 2468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.089;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.629;SOR=0.732 GT:AD:DP:GQ:PL 0/1:118,119:237:99:2497,0,2319 2 232263127 rs2290130 G A 3008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=4.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.261;SOR=0.83 GT:AD:DP:GQ:PL 0/1:125,130:255:99:3037,0,3181 2 232458443 rs10933378 T C 7129.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7158,705,0 2 232879671 rs723044 C T 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.349;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.998;SOR=0.828 GT:AD:DP:GQ:PL 0/1:72,77:149:99:1711,0,1554 2 233199107 rs75782436 C T 3958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.255;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-1.721;SOR=0.783 GT:AD:DP:GQ:PL 0/1:140,164:304:99:3987,0,3183 2 233244586 rs2853374 C G 18832.8 PASS AC=2;AF=1;AN=2;DB;DP=637;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=29.75;SOR=0.696 GT:AD:DP:GQ:PL 1/1:0,633:633:99:18861,1899,0 2 233244930 rs1048988 G C 12985.8 PASS AC=2;AF=1;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.5;QD=33.47;SOR=1.149 GT:AD:DP:GQ:PL 1/1:0,388:388:99:13014,1176,0 2 233244937 rs1048989 A G 871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.768;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=14.1;MLEAC=1;MLEAF=0.5;MQ=52.45;MQRankSum=-4.167;QD=2.18;ReadPosRankSum=-3.002;SOR=1.441 GT:AD:DP:GQ:PL 0/1:335,65:400:99:900,0,9329 2 233245141 rs2260309 T C 3624.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.585;ClippingRankSum=0;DB;DP=611;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.5;MQ=56.14;MQRankSum=-19.561;QD=5.94;ReadPosRankSum=-1.373;SOR=0.604 GT:AD:DP:GQ:PL 0/1:424,186:610:99:3653,0,11497 2 233245210 rs13034594 C T 1924.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0;DB;DP=578;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.5;MQ=52.86;MQRankSum=-14.727;QD=3.34;ReadPosRankSum=-0.36;SOR=0.728 GT:AD:DP:GQ:PL 0/1:455,122:577:99:1953,0,12649 2 233246221 rs142493383 C T 5761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.775;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=55.58;MQRankSum=0.782;QD=11.48;ReadPosRankSum=2.119;SOR=0.623 GT:AD:DP:GQ:PL 0/1:255,247:502:99:5790,0,6593 2 233271763 rs111524519 C A 3966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0;DB;DP=406;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=0.939;QD=9.77;ReadPosRankSum=-2.164;SOR=0.959 GT:AD:DP:GQ:PL 0/1:230,176:406:99:3995,0,5862 2 233273107 rs1130346 A G 35.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.345;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=21.438;MLEAC=1;MLEAF=0.5;MQ=58.23;MQRankSum=-14.607;QD=0.13;ReadPosRankSum=-4.607;SOR=1.934 GT:AD:DP:GQ:PL 0/1:249,26:275:64:64,0,6939 2 233273244 rs17416141 C A 5482.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.4;QD=30.29;SOR=1.316 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5511,542,0 2 233273504 rs183793479 T G 87.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.19;QD=21.76;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:115,12,0 2 233274145 rs2090543 G C 4551.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.69;QD=32.05;SOR=2.049 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4580,425,0 2 233274169 rs2091555 T C 1759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.366;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=11.532;MLEAC=1;MLEAF=0.5;MQ=48.49;MQRankSum=0.737;QD=10.86;ReadPosRankSum=-1.287;SOR=1.616 GT:AD:DP:GQ:PL 0/1:98,64:162:99:1788,0,2441 2 233274475 rs56080708 C A 7136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.318;ClippingRankSum=0;DB;DP=648;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.77;MQRankSum=-0.382;QD=11.01;ReadPosRankSum=1.467;SOR=0.719 GT:AD:DP:GQ:PL 0/1:342,306:648:99:7165,0,8215 2 233321641 rs61732032 C T 4990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-0.974;QD=12.08;ReadPosRankSum=-0.101;SOR=0.667 GT:AD:DP:GQ:PL 0/1:202,211:413:99:5019,0,5080 2 233322424 rs2246004 T C 4928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.478;ClippingRankSum=0;DB;DP=404;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.31;SOR=0.646 GT:AD:DP:GQ:PL 0/1:204,199:403:99:4957,0,4826 2 233322958 rs41265121 T C 5301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.762;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=3.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-1.443;SOR=0.775 GT:AD:DP:GQ:PL 0/1:227,205:432:99:5330,0,5949 2 233349588 rs1529874 G A 5700.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5729,569,0 2 233385396 rs1550094 G A 1243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.228;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=1.776;SOR=0.774 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1272,0,1692 2 233386583 rs2853445 T C 2911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.009;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=0.027;SOR=0.562 GT:AD:DP:GQ:PL 0/1:101,114:215:99:2940,0,2494 2 233388813 rs2741299 T G 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=0.99;SOR=0.651 GT:AD:DP:GQ:PL 0/1:86,81:167:99:2094,0,2272 2 233389918 rs2853447 A G 1630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=1.956;SOR=0.964 GT:AD:DP:GQ:PL 0/1:93,69:162:99:1659,0,2288 2 233396375 rs3762528 T C 1459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-1.306;SOR=0.738 GT:AD:DP:GQ:PL 0/1:52,61:113:99:1488,0,1224 2 233410294 rs2099489 C T 2160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.769;SOR=0.843 GT:AD:DP:GQ:PL 0/1:112,100:212:99:2189,0,2610 2 233470900 rs55750809 TC T 3246.73 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=33.82;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3284,289,0 2 233708806 rs3816334 A G 4048.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4077,393,0 2 233712049 rs2305137 G A 2248.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.516 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2277,218,0 2 233712226 rs10555297 CACA C 8659.73 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.8;QD=48.11;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,180:186:99:8697,599,0 2 233712248 rs12328151 G A 2358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.995;QD=11.74;ReadPosRankSum=-0.258;SOR=0.563 GT:AD:DP:GQ:PL 0/1:99,102:201:99:2387,0,2440 2 233712296 rs6437074 G A 4373.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=31.02;SOR=1.357 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4402,423,0 2 233750074 rs2292725 C T 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.028;SOR=0.572 GT:AD:DP:GQ:PL 0/1:63,53:116:99:1238,0,1646 2 233757679 rs748002 G A 1797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.897;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.493;SOR=0.495 GT:AD:DP:GQ:PL 0/1:87,75:162:99:1826,0,2134 2 233757697 rs895432 A G 4889.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4918,477,0 2 233785015 rs778354 G A 5392.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.001 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5421,527,0 2 233834975 rs4973588 A G 3373.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3402,351,0 2 233899126 rs2233391 C A 2893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.573;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=4.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.215;SOR=0.872 GT:AD:DP:GQ:PL 0/1:136,128:264:99:2922,0,3675 2 234181593 rs2289475 G C 1440.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1469,141,0 2 234183368 rs2241880 A G 3325.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=1.222 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3354,315,0 2 234235749 rs2304774 G C 2273.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2302,240,0 2 234255547 rs1046974 G A 2058.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2087,216,0 2 234386018 rs2971862 A G 4867.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4896,506,0 2 234386134 rs2971863 A G 3708.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.374 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3737,369,0 2 234394487 rs1048603 G A 6574.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6603,682,0 2 234394569 rs2603547 A G 7337.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7366,746,0 2 234421283 rs143258246 A AATATTATTTTTCTTAGT 1236.73 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=45.8;SOR=2.753 GT:AD:DP:GQ:PL 1/1:0,27:27:85:1274,85,0 2 234429739 rs141501074 T TTTC 6765.73 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=45.1;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:6803,457,0 2 234432017 rs838543 A G 7302.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7331,694,0 2 234433124 rs838549 G A 2889.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.52;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2918,314,0 2 234442437 . C CA 930.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.865;SOR=1.096 GT:AD:DP:GQ:PL 0/1:30,43:85:99:968,0,527 2 234526871 rs1042597 C G 6714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.953;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=2.45;MLEAC=1;MLEAF=0.5;MQ=58.93;MQRankSum=-7.036;QD=13.35;ReadPosRankSum=-1.794;SOR=0.894 GT:AD:DP:GQ:PL 0/1:232,271:503:99:6743,0,5926 2 234627937 rs2011404 T C 5859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.132;ClippingRankSum=0;DB;DP=508;ExcessHet=3.0103;FS=4.915;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.485;QD=11.6;ReadPosRankSum=0.82;SOR=0.849 GT:AD:DP:GQ:PL 0/1:265,240:505:99:5888,0,6449 2 234688036 rs6431631 C A 1120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.069;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=2.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.76;SOR=1.075 GT:AD:DP:GQ:PL 0/1:45,47:92:99:1149,0,1065 2 234702459 rs1500481 T C 2135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.57;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=6.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.544;SOR=1.204 GT:AD:DP:GQ:PL 0/1:87,80:167:99:2164,0,2147 2 234703136 rs6431634 T C 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.344;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=0.691;SOR=0.791 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1442,0,1114 2 234704318 rs2361503 A G 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.736;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.092;SOR=0.736 GT:AD:DP:GQ:PL 0/1:88,94:182:99:2220,0,2023 2 234704690 rs759173 T C 1638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.928;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.072;SOR=0.612 GT:AD:DP:GQ:PL 0/1:82,66:148:99:1667,0,2044 2 234708428 rs13013882 G A 4453.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4482,440,0 2 234725502 rs726016 T C 2785.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2814,290,0 2 234727986 rs6754859 C T 4799.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4828,483,0 2 234728078 rs1500480 T C 5391.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5420,534,0 2 234749783 rs17863822 C G 2214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.124;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=4.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=2.302;SOR=0.825 GT:AD:DP:GQ:PL 0/1:99,93:192:99:2243,0,2418 2 234750542 rs3732215 G C 1791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.157;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.088;SOR=0.686 GT:AD:DP:GQ:PL 0/1:91,71:162:99:1820,0,2400 2 234750831 rs3806589 T C 1320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.435;SOR=0.609 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1349,0,1570 2 234758393 rs112539245 C T 931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.28;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=-0.676;SOR=0.668 GT:AD:DP:GQ:PL 0/1:53,46:99:99:960,0,1271 2 234761225 rs2286430 C T 529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.91;ReadPosRankSum=0.667;SOR=0.605 GT:AD:DP:GQ:PL 0/1:40,27:67:99:558,0,949 2 234762480 rs626110 A T 1113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.241;SOR=0.661 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1142,0,1189 2 234763137 rs2302154 T C 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.448;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.256;SOR=1.051 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1504,0,1574 2 234835310 rs17863840 C T 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.72;SOR=0.448 GT:AD:DP:GQ:PL 0/1:60,44:104:99:1065,0,1560 2 234905078 rs11563208 C T 2469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=4.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.053;SOR=0.547 GT:AD:DP:GQ:PL 0/1:92,108:200:99:2498,0,2105 2 234915540 rs11563071 C G 805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.656;SOR=0.761 GT:AD:DP:GQ:PL 0/1:41,35:76:99:834,0,1078 2 234959703 rs150764101 G T 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=0.191;SOR=0.804 GT:AD:DP:GQ:PL 0/1:88,116:204:99:2902,0,1963 2 234978658 rs6716659 C T 1239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.863;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.89;ReadPosRankSum=0.505;SOR=0.486 GT:AD:DP:GQ:PL 0/1:27,51:78:99:1268,0,534 2 236761414 rs142341634 C CCAGG 5960.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.204;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.023;QD=19.29;ReadPosRankSum=1.155;SOR=0.687 GT:AD:DP:GQ:PL 0/1:157,152:309:99:5998,0,7452 2 236957822 rs2034648 G A 2248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.43;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-0.753;SOR=0.629 GT:AD:DP:GQ:PL 0/1:139,95:234:99:2277,0,3313 2 237029104 rs2278884 C T 6266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.077;ClippingRankSum=0;DB;DP=494;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.029;SOR=0.61 GT:AD:DP:GQ:PL 0/1:229,265:494:99:6295,0,5790 2 237103530 rs59098347 C T 2193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.84;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=0.005;SOR=0.651 GT:AD:DP:GQ:PL 0/1:70,94:164:99:2222,0,1785 2 237103548 rs10177825 G A 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.128;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=0.919;SOR=0.509 GT:AD:DP:GQ:PL 0/1:77,102:179:99:2405,0,1933 2 237123104 rs7588748 G C 2307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.741;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=4.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-1.764;SOR=1.02 GT:AD:DP:GQ:PL 0/1:119,82:201:99:2336,0,3006 2 237149941 rs6756597 C T 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=5.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=2.424;SOR=0.771 GT:AD:DP:GQ:PL 0/1:50,45:95:99:1097,0,1409 2 237247036 rs111440161 G GA 1157.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.035;QD=10.34;ReadPosRankSum=-1.909;SOR=0.867 GT:AD:DP:GQ:PL 0/1:58,54:114:99:1195,0,1126 2 237300677 rs10204742 T C 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=1.596;SOR=0.732 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1223,0,1066 2 238005476 rs34344319 C T 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.167;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.055;SOR=0.836 GT:AD:DP:GQ:PL 0/1:35,33:68:99:824,0,785 2 238243285 rs2270671 G A 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.505;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-0.097;SOR=0.911 GT:AD:DP:GQ:PL 0/1:77,91:168:99:2185,0,3015 2 238243292 rs1131296 G A 1879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.59;SOR=0.578 GT:AD:DP:GQ:PL 0/1:96,83:179:99:1908,0,3650 2 238243464 rs2270669 C G 5793.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5822,592,0 2 238244963 rs6728818 A G 6798.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6827,660,0 2 238249630 rs4433949 C T 3018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.347;SOR=0.613 GT:AD:DP:GQ:PL 0/1:105,125:230:99:3047,0,2645 2 238253149 rs2646258 G A 2310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.224;SOR=0.851 GT:AD:DP:GQ:PL 0/1:88,91:179:99:2339,0,2202 2 238257013 rs2646265 G A 541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=0.944;SOR=0.968 GT:AD:DP:GQ:PL 0/1:48,28:76:99:570,0,1217 2 238258814 rs3790993 C G 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=0.111;SOR=0.799 GT:AD:DP:GQ:PL 0/1:68,87:155:99:2183,0,1655 2 238267717 rs2646254 C T 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.74;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=1.529;SOR=0.816 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1172,0,1213 2 238271882 rs11385011 T TA 859.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.871;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=6.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=-0.522;SOR=1.337 GT:AD:DP:GQ:PL 0/1:65,44:109:99:897,0,1358 2 238277573 rs2645774 C A 2269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.287;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-1.353;SOR=0.678 GT:AD:DP:GQ:PL 0/1:152,108:260:99:2298,0,3980 2 238277795 rs2646260 A G 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-0.877;SOR=0.63 GT:AD:DP:GQ:PL 0/1:124,93:217:99:2005,0,2847 2 238283605 rs12622093 G A 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.8;SOR=0.482 GT:AD:DP:GQ:PL 0/1:108,92:200:99:2128,0,2829 2 238664729 rs56219042 C G 1261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.33;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.189;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.5;ReadPosRankSum=-0.079;SOR=1.179 GT:AD:DP:GQ:PL 0/1:38,49:87:99:1290,0,924 2 238903399 rs12615308 G A 807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=-0.485;SOR=0.786 GT:AD:DP:GQ:PL 0/1:45,38:83:99:836,0,1110 2 238999883 rs1128552 T C 736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.723;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=1.186;SOR=0.771 GT:AD:DP:GQ:PL 0/1:34,37:71:99:765,0,855 2 239016539 rs935415 C G 2766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=3.11;SOR=0.821 GT:AD:DP:GQ:PL 0/1:143,120:263:99:2795,0,3698 2 239034043 rs10170048 A C 1265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=3.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-1.142;SOR=0.396 GT:AD:DP:GQ:PL 0/1:47,53:100:99:1294,0,1103 2 239038912 rs57813708 T C 2492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.025;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.753;SOR=0.648 GT:AD:DP:GQ:PL 0/1:126,100:226:99:2521,0,3000 2 239039057 rs13033248 A G 7997.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,186:186:99:1|1:239039057_A_G:8026,560,0 2 239039075 rs13006204 G T 8244.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.17;SOR=0.768 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,191:191:99:1|1:239039057_A_G:8273,581,0 2 239039637 rs4663845 T C 9597.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,309:311:99:9626,926,0 2 239039841 rs10172220 A G 7246.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7275,708,0 2 239039896 rs10182906 G C 6823.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6852,660,0 2 239040187 rs12692215 T C 7059.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7088,690,0 2 239049540 rs2241985 G A 3643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.469;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=3.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.814;SOR=0.522 GT:AD:DP:GQ:PL 0/1:147,149:296:99:3672,0,3645 2 239050033 rs12692216 C T 9370.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.037;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.65;ReadPosRankSum=-0.647;SOR=0.732 GT:AD:DP:GQ:PL 1/1:2,314:316:99:9399,898,0 2 239051550 rs935411 T C 7898.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.08;SOR=0.801 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,213:213:99:1|1:239051550_T_C:7927,646,0 2 239051575 rs76664545 G A 2760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-1.87;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,113:213:99:0|1:239051550_T_C:2789,0,2672 2 239059484 rs7605194 T C 8332.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.183 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8361,812,0 2 239082166 rs3832064 G GC 2082.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=2.543;QD=12.47;ReadPosRankSum=-0.509;SOR=0.808 GT:AD:DP:GQ:PL 0/1:93,74:167:99:2120,0,2776 2 239165663 rs2304669 T C 2126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.342;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.993;SOR=0.713 GT:AD:DP:GQ:PL 0/1:83,93:176:99:2155,0,1829 2 239229372 rs13398676 C A 2653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.135;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-0.465;SOR=0.667 GT:AD:DP:GQ:PL 0/1:148,110:258:99:2682,0,3645 2 239229440 rs112673616 A G 2379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.208;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.452;SOR=0.77 GT:AD:DP:GQ:PL 0/1:114,99:213:99:2408,0,2721 2 239241445 . AT A 52.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=6.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.91;ReadPosRankSum=-0.946;SOR=0.406 GT:AD:DP:GQ:PL 0/1:47,11:62:90:90,0,1100 2 239306268 rs3739070 A C 3425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.898;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=11.374;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-1.339;QD=13.76;ReadPosRankSum=-1.833;SOR=1.275 GT:AD:DP:GQ:PL 0/1:118,131:249:99:3454,0,2918 2 239344412 rs3191996 C T 2979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=2.637;SOR=0.893 GT:AD:DP:GQ:PL 0/1:161,135:296:99:3008,0,3949 2 239344663 rs11904390 T A 1735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.382;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=5.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-0.18;SOR=1.068 GT:AD:DP:GQ:PL 0/1:116,74:190:99:1764,0,2770 2 240003870 rs1063639 G A 2210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.184;SOR=0.902 GT:AD:DP:GQ:PL 0/1:92,93:185:99:2239,0,2205 2 240029736 rs7585225 T C 2854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.956;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-1.259;SOR=0.765 GT:AD:DP:GQ:PL 0/1:108,110:218:99:2883,0,2493 2 240066417 rs2290087 A G 1401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.225;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.07;ReadPosRankSum=-0.403;SOR=0.945 GT:AD:DP:GQ:PL 0/1:42,51:93:99:1430,0,939 2 240946766 rs13848 T C 883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.797;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=1.292;SOR=0.859 GT:AD:DP:GQ:PL 0/1:40,37:77:99:912,0,885 2 240957243 rs6746937 C T 1128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.976;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=-1.809;SOR=0.793 GT:AD:DP:GQ:PL 0/1:67,53:120:99:1157,0,1498 2 240961728 rs2083411 T C 2069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=2.14;SOR=0.643 GT:AD:DP:GQ:PL 0/1:87,97:184:99:2098,0,1944 2 240964714 rs11541494 G C 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.835;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.515;SOR=0.563 GT:AD:DP:GQ:PL 0/1:93,77:170:99:2014,0,2773 2 240981375 rs6732185 T A 6715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0;DB;DP=573;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-0.42;QD=11.78;ReadPosRankSum=1.327;SOR=0.638 GT:AD:DP:GQ:PL 0/1:282,288:570:99:6744,0,6859 2 240982059 . CCGTGGGTG C 3869.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.734;ClippingRankSum=0;DP=419;ExcessHet=3.0103;FS=8.369;MLEAC=1;MLEAF=0.5;MQ=54.95;MQRankSum=7.239;QD=9.39;ReadPosRankSum=1.356;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 0/1:254,158:412:99:0|1:240982059_CCGTGGGTG_C:3907,0,10682 2 240982068 . AAGAGGCATGGACGAAGGGCCGTGGGTGAAGAGGCATGGACGAAGGGCC A 3509.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DP=547;ExcessHet=3.0103;FS=4.544;MLEAC=1;MLEAF=0.5;MQ=56.45;MQRankSum=5.53;QD=6.46;ReadPosRankSum=-0.326;SOR=0.761 GT:AD:DP:GQ:PGT:PID:PL 0/1:379,164:543:99:0|1:240982059_CCGTGGGTG_C:3547,0,13541 2 240982228 rs10439373 C T 5468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DB;DP=527;ExcessHet=3.0103;FS=6.991;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=2.284;QD=10.58;ReadPosRankSum=0.753;SOR=1.122 GT:AD:DP:GQ:PL 0/1:279,238:519:99:5497,0,6813 2 240984833 rs13389099 C G 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.348;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.097;QD=10.17;ReadPosRankSum=-0.756;SOR=0.865 GT:AD:DP:GQ:PL 0/1:97,79:176:99:1818,0,2332 2 240985099 rs150098707 G A 384.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.02;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.4;MQRankSum=-0.99;QD=11.32;ReadPosRankSum=0.228;SOR=0.716 GT:AD:DP:GQ:PL 0/1:18,16:34:99:413,0,561 2 240985347 rs13030992 G A 829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.56;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.5;MQ=54.04;MQRankSum=-5.99;QD=6.8;ReadPosRankSum=-1.095;SOR=0.6 GT:AD:DP:GQ:PL 0/1:83,39:122:99:858,0,2303 2 241404317 rs2229458 C T 4853.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4882,481,0 2 241404499 rs2228327 C T 5947.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5976,579,0 2 241405528 rs2228331 A G 3138.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=1.222 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3167,315,0 2 241419090 rs73010211 G A 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-0.944;SOR=0.828 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1188,0,1550 2 241451351 rs35044862 G A 2974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.097;SOR=0.731 GT:AD:DP:GQ:PL 0/1:132,126:258:99:3003,0,3058 2 241452212 rs12695026 T C 4085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.466;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=6.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.24;ReadPosRankSum=-1.136;SOR=1.043 GT:AD:DP:GQ:PL 0/1:139,148:287:99:4114,0,3404 2 241500508 rs10933615 T C 3308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.532;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=9.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.559;SOR=0.364 GT:AD:DP:GQ:PL 0/1:132,127:259:99:3337,0,3137 2 241500896 rs1128149 C T 2559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.11;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.181;SOR=0.557 GT:AD:DP:GQ:PL 0/1:109,102:211:99:2588,0,2953 2 241537421 rs3749166 G A 5435.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.08;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.07;ReadPosRankSum=1.198;SOR=0.25 GT:AD:DP:GQ:PL 1/1:1,186:187:99:5464,520,0 2 241538074 rs2975766 A G 4671.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4700,483,0 2 241569492 rs61734451 G C 6051.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6080,618,0 2 241570249 rs3749172 A C 5326.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5355,549,0 2 241827696 rs4675869 A G 5297.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=1.68 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5326,512,0 2 241828012 rs6708304 T C 7164.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.66;SOR=1.133 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,172:172:99:1|1:241828012_T_C:7193,517,0 2 241828034 rs6707568 A G 6204.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.96;SOR=1.398 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,138:138:99:1|1:241828012_T_C:6233,429,0 2 241830944 rs10171053 G T 4526.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.95;SOR=1.352 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,103:103:99:1|1:241830944_G_T:4555,313,0 2 241830969 rs10171067 G A 5133.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.78;SOR=1.421 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:241830944_G_T:5162,364,0 2 241831005 rs10195453 C T 4771.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4800,468,0 2 241831296 rs6709469 C G 6758.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6787,636,0 2 241834944 rs4468809 T C 5506.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.39;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5535,510,0 2 241835379 rs12105122 G A 8606.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8635,811,0 2 241835421 rs13426919 A G 11490.8 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.03;SOR=0.701 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,261:261:99:1|1:241835421_A_G:11519,791,0 2 241835432 rs10933514 G A 11351.8 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.83;SOR=0.732 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,259:259:99:1|1:241835421_A_G:11380,785,0 2 241872597 rs4441463 A G 6618.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6647,683,0 2 241889937 rs4077132 A G 4877.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=1.171 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4906,465,0 2 241898824 rs10169006 A G 7649.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7678,779,0 2 241904001 rs11688859 G C 5979.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.46;ReadPosRankSum=0.946;SOR=0.766 GT:AD:DP:GQ:PL 1/1:2,224:226:99:6008,615,0 2 241904781 rs12467536 C T 5553.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5582,581,0 2 241929228 rs10200024 A G 2262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.135;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.082;SOR=0.725 GT:AD:DP:GQ:PL 0/1:90,94:184:99:2291,0,2370 2 242011084 rs17440466 T C 1588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.293;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.611;SOR=0.979 GT:AD:DP:GQ:PL 0/1:71,66:137:99:1617,0,1660 2 242011151 rs6760731 A G 2696.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.7;ReadPosRankSum=-0.673;SOR=1.374 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2725,246,0 2 242072280 rs11684830 G A 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.06;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=1.365;SOR=0.842 GT:AD:DP:GQ:PL 0/1:47,38:85:99:906,0,1170 2 242077496 rs1470414 C T 1001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.441;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=-0.05;SOR=1.164 GT:AD:DP:GQ:PL 0/1:65,44:109:99:1030,0,1677 2 242082262 rs6709462 T C 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-0.228;SOR=0.737 GT:AD:DP:GQ:PL 0/1:61,53:114:99:1155,0,1389 2 242129487 rs11695874 G T 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-2.439;SOR=0.705 GT:AD:DP:GQ:PL 0/1:80,74:154:99:1654,0,1765 2 242139491 rs2013250 C T 4249.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=30.8;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4278,413,0 2 242140785 rs78154103 C G 2391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.952;SOR=0.901 GT:AD:DP:GQ:PL 0/1:81,101:182:99:2420,0,1805 2 242141719 rs2074840 C T 3526.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3555,377,0 2 242142737 rs1179530 T C 5835.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=1.295 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5864,545,0 2 242149010 rs57677160 C T 3928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=2.065;SOR=0.781 GT:AD:DP:GQ:PL 0/1:160,163:323:99:3957,0,4003 2 242151585 rs7593101 C T 894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.85;ReadPosRankSum=1.457;SOR=0.883 GT:AD:DP:GQ:PL 0/1:70,44:114:99:923,0,1828 2 242157228 rs78605785 G T 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.445;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.083;SOR=0.699 GT:AD:DP:GQ:PL 0/1:111,109:220:99:2501,0,2539 2 242163359 rs7590653 G A 2655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.646;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.1;SOR=0.757 GT:AD:DP:GQ:PL 0/1:108,107:215:99:2684,0,2672 2 242176019 rs2305073 T C 1731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.649;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.307;SOR=0.751 GT:AD:DP:GQ:PL 0/1:100,74:174:99:1760,0,2242 2 242176188 rs2305071 G C 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.572;SOR=0.557 GT:AD:DP:GQ:PL 0/1:68,62:130:99:1476,0,1826 2 242179134 rs10153800 G A 2292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.529;SOR=0.714 GT:AD:DP:GQ:PL 0/1:82,97:179:99:2321,0,1927 2 242192848 rs7578199 T C 629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.846;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-1.638;SOR=0.826 GT:AD:DP:GQ:PL 0/1:39,24:63:99:658,0,1018 2 242203916 rs11891776 A C 4952.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4981,492,0 2 242374358 rs16843671 T C 147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.89;ReadPosRankSum=1.903;SOR=0.641 GT:AD:DP:GQ:PL 0/1:27,11:38:99:176,0,655 2 242407746 rs10933559 A G 2441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.153;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=8.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.249;SOR=1.178 GT:AD:DP:GQ:PL 0/1:101,99:200:99:2470,0,2165 2 242432704 rs2271030 G C 1772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.788;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-0.249;SOR=0.853 GT:AD:DP:GQ:PL 0/1:66,67:133:99:1801,0,1665 2 242440221 rs13013693 G A 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-1.281;SOR=0.538 GT:AD:DP:GQ:PL 0/1:58,46:104:99:1032,0,1497 2 242572846 rs3208142 A G 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.793;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=2.029;SOR=0.744 GT:AD:DP:GQ:PL 0/1:117,70:187:99:1952,0,2786 2 242573211 rs7424328 T C 3033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=0.187;SOR=0.733 GT:AD:DP:GQ:PL 0/1:107,115:222:99:3062,0,2804 2 242610773 rs7601000 T A 2352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.659;SOR=0.841 GT:AD:DP:GQ:PL 0/1:114,99:213:99:2381,0,2792 2 242674803 rs77940364 G A 5030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=0.364;SOR=0.812 GT:AD:DP:GQ:PL 0/1:170,195:365:99:5059,0,4323 2 242680430 rs4073889 A G 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.943;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.473;SOR=0.845 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1228,0,1273 2 242684115 rs4234097 T C 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.345;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-0.575;SOR=0.745 GT:AD:DP:GQ:PL 0/1:98,77:175:99:1864,0,2369 2 242690675 rs1106639 G A 2418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.702;SOR=0.819 GT:AD:DP:GQ:PL 0/1:102,102:204:99:2447,0,2468 2 242757411 rs36111671 C T 6912.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6941,697,0 2 242757574 rs114863971 C T 3056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=1.543;SOR=0.779 GT:AD:DP:GQ:PL 0/1:132,127:259:99:3085,0,3420 2 242758203 rs2293763 T C 9365.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9394,931,0 2 242758326 rs2293761 G A 5941.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5970,594,0 2 242793273 rs2227981 A G 5932.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5961,618,0 2 242814009 rs7420371 G A 7080.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7109,702,0 2 242839363 rs4973668 G C 5955.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5984,611,0 3 391100 rs13060847 A G 3858.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3887,390,0 3 439963 rs6442827 A G 2947.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.04;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2976,325,0 3 440028 rs6771714 T C 2730.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2759,270,0 3 440088 rs6771803 T A 1554.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1583,149,0 3 1262474 rs2013828 T C 1545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.972;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.024;SOR=0.868 GT:AD:DP:GQ:PL 0/1:72,69:141:99:1574,0,1571 3 1369278 rs265776 G A 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.95;ReadPosRankSum=0.677;SOR=0.474 GT:AD:DP:GQ:PL 0/1:70,44:114:99:935,0,1711 3 1424718 rs2291101 G A 1430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.47;SOR=0.935 GT:AD:DP:GQ:PL 0/1:79,63:142:99:1459,0,1983 3 1424745 rs4684146 C T 1607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-0.153;SOR=0.833 GT:AD:DP:GQ:PL 0/1:89,73:162:99:1636,0,2034 3 3081750 rs6802588 A T 2445.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=1.339 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2474,243,0 3 3081825 rs339285 T C 3236.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3265,323,0 3 3170792 rs334773 C T 3325.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3354,354,0 3 3189279 rs1705805 A G 2562.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2591,254,0 3 3189398 rs1669348 A G 627.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.93;SOR=1.739 GT:AD:DP:GQ:PL 1/1:0,17:17:51:656,51,0 3 3215954 rs1669321 A G 2168.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.43;ReadPosRankSum=1.184;SOR=0.784 GT:AD:DP:GQ:PL 1/1:1,68:69:99:2197,170,0 3 3886580 rs4685689 A G 5885.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.17;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.03;ReadPosRankSum=-0.712;SOR=0.227 GT:AD:DP:GQ:PL 1/1:1,195:196:99:5914,546,0 3 3887876 rs2120609 T C 5151.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5180,510,0 3 4712413 rs2306875 G A 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.749;SOR=0.756 GT:AD:DP:GQ:PL 0/1:41,43:84:99:1188,0,1050 3 4767262 rs7613447 T C 2664.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2693,287,0 3 4817057 rs6442905 T C 3114.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3143,317,0 3 4829732 rs13079522 A G 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.666;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.709;SOR=0.851 GT:AD:DP:GQ:PL 0/1:62,65:127:99:1654,0,1483 3 4842231 rs2291862 C T 1348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=0.065;SOR=0.69 GT:AD:DP:GQ:PL 0/1:104,65:169:99:1377,0,2454 3 4856180 rs711631 T C 3903.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3932,371,0 3 4856234 rs901854 G A 2779.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.551;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.32;ReadPosRankSum=-0.788;SOR=1.423 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2808,208,0 3 5021403 rs2271566 C T 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=0.791;SOR=0.591 GT:AD:DP:GQ:PL 0/1:81,76:157:99:1923,0,2036 3 5024771 rs908078 T C 4006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.36;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=13.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=0.219;SOR=0.329 GT:AD:DP:GQ:PL 0/1:164,137:301:99:4035,0,4201 3 5213822 rs73002996 T G 1052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.558;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1;QD=11.96;ReadPosRankSum=-1.693;SOR=0.676 GT:AD:DP:GQ:PL 0/1:43,45:88:99:1081,0,1006 3 5241309 rs410509 C A 3769.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3798,378,0 3 5249962 . G GT 146.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.846;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=5.819;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.712;QD=1.42;ReadPosRankSum=1;SOR=1.315 GT:AD:DP:GQ:PL 0/1:83,20:112:99:184,0,1695 3 6903297 rs3749380 C T 5327.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5356,510,0 3 6903601 rs342034 A G 3251.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3280,329,0 3 7620168 rs34373930 A G 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=1.086;SOR=0.84 GT:AD:DP:GQ:PL 0/1:50,57:107:99:1345,0,1126 3 7620382 rs7614915 C T 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=0.055;SOR=0.699 GT:AD:DP:GQ:PL 0/1:42,56:98:99:1453,0,1148 3 7620789 rs1485175 T C 2815.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2844,282,0 3 7620828 rs1485174 G A 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-1.68;SOR=0.478 GT:AD:DP:GQ:PL 0/1:37,49:86:99:1251,0,940 3 8590313 rs3088339 T C 2875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=0.147;SOR=0.719 GT:AD:DP:GQ:PL 0/1:89,121:210:99:2904,0,1851 3 8665360 rs9809581 A G 1044.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.675 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1073,105,0 3 8667896 rs355058 T C 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=-1.843;SOR=0.399 GT:AD:DP:GQ:PL 0/1:39,29:68:99:646,0,960 3 8669367 rs5846608 TG T 2146.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.994;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=-1.572;SOR=0.653 GT:AD:DP:GQ:PL 0/1:86,77:163:99:2184,0,2410 3 8775589 rs1974763 C T 660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.085;SOR=1.028 GT:AD:DP:GQ:PL 0/1:31,29:60:99:689,0,819 3 8787313 rs116840776 C G 2384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.967;SOR=0.71 GT:AD:DP:GQ:PL 0/1:98,101:199:99:2413,0,2293 3 8809184 rs237902 G A 8067.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,259:259:99:8096,776,0 3 8809703 rs2228485 G A 6896.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6925,654,0 3 8955389 rs373572 C T 646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.395;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=2.555;SOR=0.961 GT:AD:DP:GQ:PL 0/1:41,30:71:99:675,0,850 3 9005078 rs615967 C T 1904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=0.118;SOR=0.656 GT:AD:DP:GQ:PL 0/1:59,77:136:99:1933,0,1449 3 9036010 rs637172 T G 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.492;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=-0.411;SOR=0.541 GT:AD:DP:GQ:PL 0/1:80,105:185:99:2736,0,1774 3 9406836 rs1054975 T C 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=4.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=3.275;SOR=0.465 GT:AD:DP:GQ:PL 0/1:87,103:190:99:2422,0,1948 3 9407022 rs2648536 T C 1472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.791;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.457;SOR=0.624 GT:AD:DP:GQ:PL 0/1:87,62:149:99:1501,0,2268 3 9422210 rs2596916 T C 952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.447;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.325;SOR=0.798 GT:AD:DP:GQ:PL 0/1:40,40:80:99:981,0,947 3 9425911 rs1129170 G A 1662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.922;SOR=0.793 GT:AD:DP:GQ:PL 0/1:83,70:153:99:1691,0,2234 3 9543998 rs376667655 AAG A 210.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.198;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.89;ReadPosRankSum=-1.039;SOR=0.954 GT:AD:DP:GQ:PL 0/1:60,13:73:99:248,0,1862 3 9746256 rs201088175 G A 593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.669;SOR=0.646 GT:AD:DP:GQ:PL 0/1:30,25:55:99:622,0,957 3 9768336 rs3868893 C G 988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=2.516;SOR=1.246 GT:AD:DP:GQ:PL 0/1:43,39:82:99:1017,0,1018 3 9798475 rs113561019 G A 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=2.14;SOR=1.018 GT:AD:DP:GQ:PL 0/1:67,66:133:99:1811,0,1862 3 9803126 rs17252807 A G 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4590,471,0 3 9841989 rs6443266 A G 5300.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5329,542,0 3 9852059 rs5846648 C CGAT 10042.7 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=34.39;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,292:292:99:10080,880,0 3 9859456 rs3806672 C G 5716.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5745,566,0 3 9867625 rs3732527 C T 12011.8 PASS AC=2;AF=1;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,398:398:99:12040,1193,0 3 9870857 rs2290303 G A 10635.8 PASS AC=2;AF=1;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10664,1023,0 3 9871030 rs2290305 T G 14299.8 PASS AC=2;AF=1;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.983 GT:AD:DP:GQ:PL 1/1:0,459:459:99:14328,1378,0 3 9874914 rs115917139 C T 2569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.137;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.411;SOR=0.562 GT:AD:DP:GQ:PL 0/1:111,109:220:99:2598,0,2567 3 9934605 rs279553 T C 2026.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2055,192,0 3 9952706 rs279572 A G 4768.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4797,461,0 3 9956279 rs455863 G A 4779.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4808,447,0 3 9957455 rs1056286 C T 6063.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6092,596,0 3 9960070 rs708567 C T 2891.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2920,287,0 3 9962157 rs783494 T C 1748.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=1.823 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1777,171,0 3 9970031 rs279549 A G 7994.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,254:254:99:8023,762,0 3 9970158 rs279548 C T 5729.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.7;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5758,510,0 3 9975247 rs183956 C G 6994.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7023,702,0 3 9976159 rs279552 A G 4975.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5004,477,0 3 9991388 rs279601 G C 6603.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6632,618,0 3 10028294 rs11551739 G A 2809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.107;SOR=0.651 GT:AD:DP:GQ:PL 0/1:97,113:210:99:2838,0,2648 3 10088299 rs112887807 C T 103.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=2.698;MLEAC=1;MLEAF=0.5;MQ=55.14;MQRankSum=-4.234;QD=0.92;ReadPosRankSum=0.839;SOR=1.162 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,11:113:99:0|1:10088299_C_T:132,0,4415 3 10088308 rs72492998 T C 118.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=54.25;MQRankSum=-3.726;QD=1.06;ReadPosRankSum=-0.148;SOR=1.082 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,11:112:99:0|1:10088299_C_T:147,0,4238 3 10119886 . G A 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.688;SOR=0.792 GT:AD:DP:GQ:PL 0/1:39,48:87:99:1050,0,831 3 10128965 . CT C 189.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=4.154;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.862;QD=5.58;ReadPosRankSum=-1.259;SOR=1.473 GT:AD:DP:GQ:PL 0/1:21,13:52:99:227,0,348 3 10142949 rs3172417 C T 1335.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1364,132,0 3 10219510 rs1711109 C T 3379.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.526 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3408,333,0 3 10413601 rs2289273 G A 2894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.761;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-1.061;SOR=0.704 GT:AD:DP:GQ:PL 0/1:175,130:305:99:2923,0,4153 3 10413715 rs2289274 G A 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=1.505;SOR=0.669 GT:AD:DP:GQ:PL 0/1:101,104:205:99:2597,0,2553 3 10420087 rs751122 T C 2755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.44;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.644;SOR=0.796 GT:AD:DP:GQ:PL 0/1:157,117:274:99:2784,0,3596 3 10858005 . C T 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0;DP=201;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=1.005;SOR=0.57 GT:AD:DP:GQ:PL 0/1:112,88:200:99:1940,0,2865 3 10885920 rs2304725 T C 2158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.763;SOR=0.72 GT:AD:DP:GQ:PL 0/1:100,95:195:99:2187,0,2383 3 10967739 rs2272395 T C 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=6.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.417;SOR=0.302 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1172,0,1191 3 10975745 rs2272399 C T 754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.2;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=1.716;SOR=0.446 GT:AD:DP:GQ:PL 0/1:30,34:64:99:783,0,662 3 10976876 rs2245532 A G 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.059;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-1.041;SOR=0.649 GT:AD:DP:GQ:PL 0/1:82,59:141:99:1404,0,1999 3 11300707 rs901865 T C 1928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-1.313;SOR=0.505 GT:AD:DP:GQ:PL 0/1:84,81:165:99:1957,0,2038 3 11350553 rs2305686 C T 1070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.32;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=-1.412;SOR=0.889 GT:AD:DP:GQ:PL 0/1:72,47:119:99:1099,0,1594 3 11596302 rs8154 T C 2240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.213;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=9.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.745;SOR=1.218 GT:AD:DP:GQ:PL 0/1:101,90:191:99:2269,0,2408 3 11643465 rs2276749 T C 9446.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.228 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9475,921,0 3 11887991 rs408600 C G 1945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.11;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.165;SOR=0.774 GT:AD:DP:GQ:PL 0/1:83,80:163:99:1974,0,2094 3 12229015 rs794999 A G 4957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.585;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=0.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=0.716;SOR=0.652 GT:AD:DP:GQ:PL 0/1:175,188:363:99:4986,0,4371 3 12232074 rs310764 A G 7811.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.087 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7840,765,0 3 12393125 rs1801282 C G 1175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.485;SOR=0.586 GT:AD:DP:GQ:PL 0/1:51,56:107:99:1204,0,1122 3 12475557 rs3856806 C T 2356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=8.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-1.554;SOR=0.998 GT:AD:DP:GQ:PL 0/1:110,98:208:99:2385,0,2973 3 12571420 . G GT 356.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=3.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.57;ReadPosRankSum=0.561;SOR=0.409 GT:AD:DP:GQ:PL 0/1:75,25:111:99:394,0,1448 3 12613866 rs2648307 T C 1540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=4.327;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.053;SOR=1.136 GT:AD:DP:GQ:PL 0/1:67,62:129:99:1569,0,1617 3 12861586 rs4684883 T C 697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.269;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=0.019;SOR=0.857 GT:AD:DP:GQ:PL 0/1:48,27:75:99:726,0,1218 3 12861608 rs3817121 G A 720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.1;ReadPosRankSum=-0.356;SOR=0.642 GT:AD:DP:GQ:PL 0/1:54,35:89:99:749,0,1409 3 12875443 rs12629133 G A 1726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=9.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=0.231;SOR=1.139 GT:AD:DP:GQ:PL 0/1:58,69:127:99:1755,0,1574 3 12942850 rs56387830 GC G 3834.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.232;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=12.927;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=35.18;ReadPosRankSum=1.705;SOR=2.538 GT:AD:DP:GQ:PL 1/1:2,107:109:99:3872,277,0 3 12962101 rs115632343 G A 1555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.791;SOR=0.865 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1584,0,1620 3 13361287 rs354478 C T 4638.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4667,461,0 3 13361391 rs354479 A G 7222.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7251,758,0 3 13364876 rs514084 G T 4588.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.09;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.062;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.31;ReadPosRankSum=1.851;SOR=0.28 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4617,490,0 3 13367406 rs665064 C T 6534.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6563,668,0 3 13439005 rs7628923 A G 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.928;SOR=0.635 GT:AD:DP:GQ:PL 0/1:77,72:149:99:1683,0,1804 3 13545697 rs17038240 C T 2215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.102;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=4.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=2.499;SOR=0.982 GT:AD:DP:GQ:PL 0/1:104,91:195:99:2244,0,2459 3 13611850 rs3732668 T C 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.159;SOR=0.736 GT:AD:DP:GQ:PL 0/1:108,106:214:99:2536,0,2755 3 13612020 rs3732667 T C 3758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=1.64;SOR=0.692 GT:AD:DP:GQ:PL 0/1:131,152:283:99:3787,0,3302 3 13612936 rs3732666 A G 3555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.444;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=0.239;SOR=0.631 GT:AD:DP:GQ:PL 0/1:122,132:254:99:3584,0,3071 3 14174427 rs4685076 A T 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=0.778;SOR=0.693 GT:AD:DP:GQ:PL 0/1:52,44:96:99:921,0,1203 3 14175262 rs2340917 T C 1652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.021;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.262;SOR=0.806 GT:AD:DP:GQ:PL 0/1:80,70:150:99:1681,0,1920 3 14187449 rs2228001 G T 3202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.949;SOR=0.723 GT:AD:DP:GQ:PL 0/1:120,127:247:99:3231,0,3203 3 14190237 rs2279017 T G 4452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.621;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-1.131;SOR=0.852 GT:AD:DP:GQ:PL 0/1:166,173:339:99:4481,0,4127 3 14193889 rs2227998 C T 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.687;SOR=0.547 GT:AD:DP:GQ:PL 0/1:82,73:155:99:1839,0,1984 3 14197987 rs2958057 A T 6774.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6803,678,0 3 14561627 rs5846840 A AG 5559.73 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.64;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5597,472,0 3 14708918 rs2280383 A G 2272.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.38;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2301,247,0 3 14712473 rs1901 G A 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.854;SOR=0.882 GT:AD:DP:GQ:PL 0/1:80,61:141:99:1328,0,1989 3 14724413 rs9821143 G A 2698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.628;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=5.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.433;SOR=0.447 GT:AD:DP:GQ:PL 0/1:120,110:230:99:2727,0,2880 3 14768534 rs7636830 A G 5783.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5812,573,0 3 14798976 rs61736141 G A 1980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.834;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.213;SOR=1.014 GT:AD:DP:GQ:PL 0/1:84,79:163:99:2009,0,1896 3 14801487 rs36096720 G A 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-2.436;SOR=0.848 GT:AD:DP:GQ:PL 0/1:43,56:99:99:1358,0,1055 3 14939479 rs2164356 G T 6724.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.101;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=3.698;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.14;ReadPosRankSum=-0.506;SOR=0.733 GT:AD:DP:GQ:PL 1/1:1,238:239:99:6753,705,0 3 14965507 rs4685235 A G 5581.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.228 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5610,561,0 3 15080696 rs2230444 G A 580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.276;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=-1.727;SOR=0.756 GT:AD:DP:GQ:PL 0/1:40,27:67:99:609,0,977 3 15115270 rs3831 G T 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.748;SOR=0.668 GT:AD:DP:GQ:PL 0/1:90,91:181:99:1921,0,2065 3 15311325 rs1287467 A G 3426.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3455,324,0 3 15471528 rs11322247 AT A 33.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.54;ReadPosRankSum=-0.196;SOR=0.674 GT:AD:DP:GQ:PL 0/1:52,11:66:71:71,0,1254 3 15686693 rs13078881 G C 3647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.557;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=1.517;SOR=0.712 GT:AD:DP:GQ:PL 0/1:133,141:274:99:3676,0,3345 3 15719049 rs34208188 T C 969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.219;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-1.208;SOR=0.506 GT:AD:DP:GQ:PL 0/1:45,42:87:99:998,0,994 3 15737689 rs2470548 G A 1951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.176;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=2.216;SOR=0.705 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,53:132:99:0|1:15737689_G_A:1980,0,3420 3 15737698 rs2470549 T C 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.292;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=0.449;SOR=0.642 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,58:132:99:0|1:15737689_G_A:2065,0,3411 3 15753641 rs2455834 A G 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.69;ReadPosRankSum=-0.118;SOR=0.687 GT:AD:DP:GQ:PL 0/1:62,39:101:99:805,0,1522 3 15807725 rs6789076 T A 959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=-2.534;SOR=0.936 GT:AD:DP:GQ:PL 0/1:27,40:67:99:988,0,613 3 16268974 rs15767 T A 1826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.626;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=1.677;SOR=0.693 GT:AD:DP:GQ:PL 0/1:75,76:151:99:1855,0,1674 3 16268986 rs14576 C A 1846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-1.172;SOR=0.777 GT:AD:DP:GQ:PL 0/1:76,81:157:99:1875,0,1779 3 16327909 rs6777976 C T 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.162;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-1.009;SOR=0.681 GT:AD:DP:GQ:PL 0/1:43,40:83:99:1025,0,1147 3 16358584 rs690241 T C 5329.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5358,534,0 3 16364919 rs690216 A C 2929.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2958,288,0 3 16364954 rs11554130 C T 1001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.203;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.63;SOR=0.566 GT:AD:DP:GQ:PL 0/1:52,44:96:99:1030,0,1231 3 16450872 rs1546650 T C 837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-1.106;SOR=0.627 GT:AD:DP:GQ:PL 0/1:56,40:96:99:866,0,1303 3 16636093 rs35729175 TA T 686.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.913;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-3.206;SOR=0.675 GT:AD:DP:GQ:PL 0/1:19,39:69:99:724,0,390 3 17208267 rs1138454 T C 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.155;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=-1.488;SOR=1.011 GT:AD:DP:GQ:PL 0/1:100,113:213:99:2859,0,2253 3 18427924 rs2229261 G T 1326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-1.06;SOR=0.43 GT:AD:DP:GQ:PL 0/1:75,56:131:99:1355,0,1937 3 19959707 . AT A 92.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.159;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=2.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.8;ReadPosRankSum=-0.769;SOR=0.537 GT:AD:DP:GQ:PL 0/1:96,20:123:99:130,0,2357 3 19959756 rs2929366 G A 1649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-1.08;SOR=0.78 GT:AD:DP:GQ:PL 0/1:83,76:159:99:1678,0,2073 3 19961330 rs2931403 C T 2278.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2307,216,0 3 19962044 rs13078867 G A 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.34;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=1.335;SOR=0.858 GT:AD:DP:GQ:PL 0/1:67,53:120:99:1219,0,1419 3 19975215 rs17795400 C A 3239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-1.272;SOR=0.692 GT:AD:DP:GQ:PL 0/1:131,135:266:99:3268,0,3271 3 19992432 rs6773437 G T 4493.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4522,450,0 3 20042834 rs4103004 C T 4188.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4217,413,0 3 20043502 rs9882323 C T 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.432;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=0.884;SOR=1.128 GT:AD:DP:GQ:PL 0/1:53,41:94:99:982,0,1235 3 20043531 rs9882344 C T 865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.034;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.017;SOR=1.138 GT:AD:DP:GQ:PL 0/1:54,37:91:99:894,0,1322 3 20053581 rs2686326 C T 712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.257;SOR=0.697 GT:AD:DP:GQ:PL 0/1:31,33:64:99:741,0,817 3 20113830 rs3021408 G A 3529.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.397 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3558,346,0 3 20212189 rs1052930 A G 4104.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4133,407,0 3 20216519 rs61729306 T A 1253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.364;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=0.887;SOR=0.563 GT:AD:DP:GQ:PL 0/1:43,51:94:99:1282,0,1027 3 21462787 rs427233 G A 6436.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.106 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6465,648,0 3 23574201 . C T 1722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.25;ReadPosRankSum=-1.027;SOR=0.488 GT:AD:DP:GQ:PL 0/1:45,68:113:99:1751,0,1189 3 24006477 rs4858097 T A 2310.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.379 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2339,231,0 3 25639973 rs11372851 A AT 776.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.34;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=7.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=0.978;SOR=0.201 GT:AD:DP:GQ:PL 0/1:32,36:68:99:814,0,621 3 25661557 rs3832214 T TA 743.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.983;QD=13.52;ReadPosRankSum=-1.224;SOR=1.046 GT:AD:DP:GQ:PL 0/1:26,29:55:99:781,0,667 3 25666156 rs2293787 C T 1297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=0.164;SOR=0.426 GT:AD:DP:GQ:PL 0/1:43,53:96:99:1326,0,1006 3 25674091 rs3736601 C A 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.269;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.04;SOR=0.801 GT:AD:DP:GQ:PL 0/1:41,34:75:99:925,0,1082 3 25679738 rs60422476 T C 2225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.25;ReadPosRankSum=0.037;SOR=0.99 GT:AD:DP:GQ:PL 0/1:53,76:129:99:2254,0,1525 3 25775356 rs6550987 A C 571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.794;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=3.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=0.308;SOR=1.197 GT:AD:DP:GQ:PL 0/1:41,26:67:99:600,0,994 3 25792762 . G GA 123.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=6.821;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=2.721;QD=1.93;ReadPosRankSum=2.146;SOR=0.18 GT:AD:DP:GQ:PL 0/1:50,14:64:99:161,0,1023 3 27182990 rs41487750 T C 905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.669;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.361;SOR=0.56 GT:AD:DP:GQ:PL 0/1:34,36:70:99:934,0,761 3 27243045 rs17680166 G C 714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=0.328;SOR=0.653 GT:AD:DP:GQ:PL 0/1:40,35:75:99:743,0,975 3 27297816 rs3213930 G C 1739.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1768,183,0 3 27326097 rs11129280 G T 437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.312;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=1.699;SOR=0.475 GT:AD:DP:GQ:PL 0/1:31,20:51:99:466,0,725 3 27326451 rs10510594 A G 570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.825;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=5.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=-0.028;SOR=1.382 GT:AD:DP:GQ:PL 0/1:39,22:61:99:599,0,1009 3 27332177 rs674303 T C 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.91;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=0.675;SOR=0.793 GT:AD:DP:GQ:PL 0/1:37,39:76:99:1056,0,803 3 27332820 rs10510592 A G 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.092;SOR=0.842 GT:AD:DP:GQ:PL 0/1:52,45:97:99:1075,0,1318 3 27363710 rs141505128 C A 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=4.86;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-0.801;QD=8.16;ReadPosRankSum=0.176;SOR=1.013 GT:AD:DP:GQ:PL 0/1:39,27:66:99:567,0,952 3 27424718 rs1472256 A G 2491.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.69;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2520,268,0 3 27763427 rs368178421 G GCGGCGC 10285.7 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.6;QD=49.21;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,209:214:99:10323,710,0 3 29529913 rs5847572 TTC T 2938.73 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.09;QD=42.59;SOR=1.478 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,69:69:99:1|1:29529907_G_A:2976,208,0 3 30029724 rs1868491 C T 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.425;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-0.937;SOR=0.836 GT:AD:DP:GQ:PL 0/1:48,43:91:99:848,0,1154 3 30686414 rs1155705 A G 1147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.657;SOR=1.059 GT:AD:DP:GQ:PL 0/1:47,49:96:99:1176,0,1123 3 30769819 rs62636628 C T 1337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.71;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.74;ReadPosRankSum=-1.784;SOR=0.789 GT:AD:DP:GQ:PL 0/1:90,63:153:99:1366,0,2246 3 30842597 rs59931065 A AT 559.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=0.769;SOR=0.911 GT:AD:DP:GQ:PL 0/1:21,21:42:99:597,0,623 3 31712393 rs3749405 C T 2424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=1.154;SOR=0.849 GT:AD:DP:GQ:PL 0/1:106,108:214:99:2453,0,2525 3 31789582 rs2290532 T C 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=-1.587;SOR=0.929 GT:AD:DP:GQ:PL 0/1:107,77:184:99:1683,0,2660 3 32578505 rs2303857 T C 447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.157;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.59;ReadPosRankSum=-0.853;SOR=1.018 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,22:59:99:0|1:32578505_T_C:476,0,872 3 32927509 rs6774703 G T 8934.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,314:314:99:8963,942,0 3 32995928 rs2228428 C T 4885.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.45;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4914,531,0 3 33055721 rs4302331 A G 9096.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9125,893,0 3 33063050 rs13093698 A G 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.673;SOR=0.859 GT:AD:DP:GQ:PL 0/1:80,76:156:99:1726,0,1755 3 33107060 rs34204221 A G 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.06;SOR=0.694 GT:AD:DP:GQ:PL 0/1:80,88:168:99:2084,0,1890 3 33138544 rs7614776 A G 4267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.337;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.41;ReadPosRankSum=2.833;SOR=0.619 GT:AD:DP:GQ:PGT:PID:PL 0/1:146,114:260:99:0|1:33138544_A_G:4296,0,6624 3 33138549 rs7637099 G A 4218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.41;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.42;ReadPosRankSum=2.596;SOR=0.615 GT:AD:DP:GQ:PGT:PID:PL 0/1:145,112:257:99:0|1:33138544_A_G:4247,0,6673 3 33174156 rs1135127 T G 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.557;SOR=0.732 GT:AD:DP:GQ:PL 0/1:78,73:151:99:1712,0,1941 3 33174168 rs1135128 G A 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=2.732;SOR=0.656 GT:AD:DP:GQ:PL 0/1:75,63:138:99:1486,0,1982 3 33194990 rs6810039 C A 3494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.667;SOR=0.77 GT:AD:DP:GQ:PL 0/1:159,143:302:99:3523,0,4024 3 33255592 rs9637517 A G 4614.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.304 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4643,452,0 3 33444286 rs623244 T G 3518.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.71;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3547,380,0 3 33728610 rs61738888 A G 546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.341;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=3.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=0.725;SOR=1.214 GT:AD:DP:GQ:PL 0/1:38,25:63:99:575,0,877 3 33877626 rs3792594 G A 594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=0.641;SOR=0.82 GT:AD:DP:GQ:PL 0/1:41,27:68:99:623,0,915 3 33879770 rs3203777 G A 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.347;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.5;MQ=58.66;MQRankSum=-1.408;QD=10.81;ReadPosRankSum=1.409;SOR=0.557 GT:AD:DP:GQ:PL 0/1:76,66:142:99:1563,0,1777 3 33893987 rs9813017 A G 459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.82;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=9.908;MLEAC=1;MLEAF=0.5;MQ=57.08;MQRankSum=1.174;QD=10.69;ReadPosRankSum=1.408;SOR=0.103 GT:AD:DP:GQ:PL 0/1:24,19:43:99:488,0,533 3 33895391 rs3183982 A G 541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.93;ReadPosRankSum=0.847;SOR=1.27 GT:AD:DP:GQ:PL 0/1:14,20:34:99:570,0,362 3 33907835 rs74673337 T TCTCC 1770.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=4.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.3;ReadPosRankSum=-1.003;SOR=0.322 GT:AD:DP:GQ:PL 0/1:27,43:70:99:1808,0,1519 3 33907945 rs3183987 A G 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.985;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.94;ReadPosRankSum=-1.01;SOR=0.743 GT:AD:DP:GQ:PL 0/1:54,74:128:99:1941,0,1160 3 35725250 rs969818 C T 230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.92;ReadPosRankSum=0.267;SOR=0.722 GT:AD:DP:GQ:PL 0/1:25,14:39:99:259,0,562 3 35778773 rs2278757 A G 1695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.31;SOR=0.568 GT:AD:DP:GQ:PL 0/1:65,77:142:99:1724,0,1465 3 35779750 rs2012153 A G 2014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.92;ReadPosRankSum=-0.675;SOR=0.456 GT:AD:DP:GQ:PL 0/1:50,85:135:99:2043,0,1026 3 36779707 rs3796187 G A 3763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.727;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=0.894;SOR=0.616 GT:AD:DP:GQ:PL 0/1:123,142:265:99:3792,0,3349 3 36896653 rs9818599 G C 3444.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=1.462 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3473,324,0 3 36897812 rs11712950 T C 2995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.87;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.717;SOR=0.783 GT:AD:DP:GQ:PL 0/1:161,120:281:99:3024,0,4008 3 36898036 rs62245253 G A 3943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.631;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.023;SOR=0.635 GT:AD:DP:GQ:PL 0/1:158,155:313:99:3972,0,3814 3 36940741 rs9864910 G T 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-1.39;SOR=0.837 GT:AD:DP:GQ:PL 0/1:98,88:186:99:2069,0,2435 3 37053568 rs1799977 A G 874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.384;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=1.343;SOR=0.784 GT:AD:DP:GQ:PL 0/1:54,41:95:99:903,0,1251 3 37083740 rs9876116 A G 387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.32;ReadPosRankSum=0.078;SOR=0.606 GT:AD:DP:GQ:PL 0/1:33,20:53:99:416,0,777 3 37163039 rs336595 G A 3384.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3413,348,0 3 37366459 rs11718848 C A 1479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.452;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=7.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=0.203;SOR=0.537 GT:AD:DP:GQ:PL 0/1:49,60:109:99:1508,0,1321 3 37368755 rs62241896 T A 1406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.431;SOR=0.619 GT:AD:DP:GQ:PL 0/1:48,59:107:99:1435,0,1162 3 37378670 . CT C 60.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.166;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.38;ReadPosRankSum=-0.095;SOR=1.03 GT:AD:DP:GQ:PL 0/1:34,10:47:98:98,0,776 3 37535984 rs2507940 C G 713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.217;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-0.772;SOR=0.972 GT:AD:DP:GQ:PL 0/1:44,30:74:99:742,0,1194 3 37574951 rs267561 G A 1686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.128;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.93;ReadPosRankSum=0.267;SOR=0.908 GT:AD:DP:GQ:PL 0/1:48,65:113:99:1715,0,1411 3 37695192 rs3821909 G A 1831.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1860,192,0 3 37774304 rs58228096 C T 1385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.045;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.371;SOR=0.759 GT:AD:DP:GQ:PL 0/1:52,64:116:99:1414,0,983 3 37778481 rs1118148 G C 799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.773;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=0.242;SOR=0.799 GT:AD:DP:GQ:PL 0/1:52,37:89:99:828,0,1122 3 38080952 rs7625806 T G 11665.8 PASS AC=2;AF=1;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,377:377:99:11694,1131,0 3 38081031 rs7616776 A T 9860.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.54;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9889,881,0 3 38103776 rs116202356 G A 2564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=1.14;SOR=0.697 GT:AD:DP:GQ:PL 0/1:89,105:194:99:2593,0,2098 3 38125705 rs7652276 G A 4854.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.27;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4883,530,0 3 38151731 rs12630114 T C 6578.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6607,614,0 3 38158586 . A C 3535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0;DP=284;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=1.454;SOR=0.641 GT:AD:DP:GQ:PL 0/1:143,139:282:99:3564,0,3762 3 38170810 rs156265 C G 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-1.931;SOR=0.722 GT:AD:DP:GQ:PL 0/1:62,69:131:99:1772,0,1484 3 38350479 rs818819 T C 3971.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.86;ReadPosRankSum=-0.482;SOR=0.376 GT:AD:DP:GQ:PL 1/1:1,132:133:99:4000,359,0 3 38350519 rs818818 G A 3788.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3817,380,0 3 38350543 rs818817 A G 3863.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3892,389,0 3 38350630 rs704929 C A 2796.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=1.455 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2825,264,0 3 38401839 rs818850 T C 2693.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2722,284,0 3 38401918 rs818849 A G 3003.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3032,324,0 3 38404472 rs17118 C A 4311.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.46;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4340,469,0 3 38406773 rs704943 G T 3456.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3485,345,0 3 38406793 rs2234608 T G 3188.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3217,305,0 3 38408361 rs843890 G A 2031.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2060,213,0 3 38442490 rs2070488 G A 882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.963;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.65;ReadPosRankSum=0.495;SOR=0.91 GT:AD:DP:GQ:PL 0/1:62,40:102:99:911,0,1400 3 38519424 rs2070489 A G 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=1.187;SOR=0.572 GT:AD:DP:GQ:PL 0/1:98,87:185:99:2159,0,2310 3 38521156 rs13097628 T C 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=1.014;SOR=0.752 GT:AD:DP:GQ:PL 0/1:87,65:152:99:1672,0,2483 3 38524742 rs1046048 C T 2910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=1.052;SOR=0.679 GT:AD:DP:GQ:PL 0/1:136,135:271:99:2939,0,2988 3 38622467 rs7430407 T C 1714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=6.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-1.04;SOR=1.209 GT:AD:DP:GQ:PL 0/1:77,67:144:99:1743,0,2102 3 38645420 rs1805124 T C 2822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.536;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=1.427;SOR=0.729 GT:AD:DP:GQ:PL 0/1:114,107:221:99:2851,0,2628 3 38647642 rs41312433 G T 1497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.728;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.483;SOR=0.894 GT:AD:DP:GQ:PL 0/1:72,62:134:99:1526,0,1660 3 38674712 rs6599230 T C 2405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.876;SOR=0.64 GT:AD:DP:GQ:PL 0/1:141,110:251:99:2434,0,3333 3 38739574 rs6599241 T C 6035.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6064,552,0 3 38739845 rs6599242 A G 3257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.478;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=4.978;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.624;SOR=0.467 GT:AD:DP:GQ:PL 0/1:130,125:257:99:3286,0,3308 3 38766675 rs6795970 A G 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=6.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.542;SOR=1.218 GT:AD:DP:GQ:PL 0/1:69,62:131:99:1539,0,1712 3 38766701 rs6791171 C T 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.024;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.334;SOR=0.796 GT:AD:DP:GQ:PL 0/1:84,73:157:99:1677,0,1906 3 38784029 rs6599250 T C 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.155;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.93;ReadPosRankSum=1.286;SOR=0.976 GT:AD:DP:GQ:PL 0/1:44,49:93:99:1417,0,1054 3 38945560 rs4073113 A G 4495.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4524,426,0 3 39180099 rs784498 T C 5221.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5250,509,0 3 39180263 rs704959 G A 3880.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3909,375,0 3 39184959 rs1274958 C T 4689.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4718,452,0 3 39185077 rs1274957 G A 5702.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5731,586,0 3 39185248 rs784519 A G 7574.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7603,705,0 3 39186728 rs784517 C T 6146.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6175,587,0 3 39229900 rs6805248 T C 9771.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,313:313:99:9800,939,0 3 39323163 rs11715522 A C 1732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.318;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.453;SOR=0.75 GT:AD:DP:GQ:PL 0/1:55,73:128:99:1761,0,1190 3 39449137 rs1803893 T C 2414.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.49;QD=32.2;SOR=1.164 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2443,225,0 3 39453160 rs2269350 G A 1726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.55;MQRankSum=-0.439;QD=12.25;ReadPosRankSum=1.461;SOR=0.681 GT:AD:DP:GQ:PL 0/1:65,76:141:99:1755,0,1579 3 40208450 rs12494283 C G 1197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=-0.578;SOR=0.554 GT:AD:DP:GQ:PL 0/1:35,52:87:99:1226,0,776 3 40231883 rs1317317 C T 8103.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8132,825,0 3 40251392 rs1799418 T C 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.73;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=1.685;SOR=0.515 GT:AD:DP:GQ:PL 0/1:116,89:205:99:2023,0,2809 3 40286017 rs4618168 T C 2902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=3.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-0.021;SOR=0.512 GT:AD:DP:GQ:PL 0/1:90,131:221:99:2931,0,1926 3 40468896 rs1047855 C T 1200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.25;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=4.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.17;ReadPosRankSum=-0.285;SOR=0.73 GT:AD:DP:GQ:PL 0/1:93,54:147:99:1229,0,2272 3 40498845 rs2276868 C T 808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=1.359;SOR=0.742 GT:AD:DP:GQ:PL 0/1:35,31:66:99:837,0,1015 3 40503520 . A ACTGCTGCTG,ACTGCTGCTGCTGCTG 9629.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.878;ClippingRankSum=0;DP=301;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=57.21;MQRankSum=-0.967;QD=40.98;ReadPosRankSum=0.073;SOR=1.094 GT:AD:DP:GQ:PL 1/2:2,132,101:253:99:9667,3406,4036,5678,0,5305 3 40519429 rs4553952 T C 2773.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2802,267,0 3 41756965 rs61744388 C T 3422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=-0.21;SOR=0.597 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,97:221:99:0|1:41756965_C_T:3451,0,6282 3 41756986 rs61744385 A T 3264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=1.138;SOR=0.558 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,89:212:99:0|1:41756965_C_T:3293,0,6333 3 41795841 rs9867627 A C 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.924;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-1.219;SOR=0.854 GT:AD:DP:GQ:PL 0/1:82,80:162:99:1923,0,1931 3 41831203 rs17215589 C T 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.505;SOR=0.729 GT:AD:DP:GQ:PL 0/1:103,80:183:99:1727,0,2671 3 41841716 rs4973986 A C 3889.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3918,369,0 3 41861013 rs59543183 GA G 632.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=0.362;SOR=0.477 GT:AD:DP:GQ:PL 0/1:39,34:77:99:670,0,930 3 41877414 rs3774372 T C 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-1.029;SOR=0.743 GT:AD:DP:GQ:PL 0/1:32,39:71:99:969,0,808 3 41877473 rs367978541 C CAAA 565.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.5;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.86;ReadPosRankSum=-0.122;SOR=0.557 GT:AD:DP:GQ:PL 0/1:16,14:44:99:603,0,680 3 41925398 rs1052501 C T 840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=3.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.41;ReadPosRankSum=1.342;SOR=0.746 GT:AD:DP:GQ:PL 0/1:58,42:100:99:869,0,1430 3 41925423 rs1716687 T C 2762.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.216 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2791,276,0 3 41937000 rs1717003 C T 510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.373;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=0.184;SOR=0.743 GT:AD:DP:GQ:PL 0/1:36,24:60:99:539,0,860 3 41938500 rs1717005 G C 3145.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.77;SOR=1.896 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3174,287,0 3 41939993 rs1625226 T A 1115.28 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.92;ReadPosRankSum=1.079;SOR=0.47 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,49:56:9:1|0:41939990_GT_G:1143,0,9 3 41942199 rs1717007 T C 1122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.128;SOR=0.387 GT:AD:DP:GQ:PL 0/1:32,50:82:99:1151,0,693 3 41952852 rs35263917 T C 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.006;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=6.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.877;SOR=0.782 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1550,0,1890 3 41957466 rs1716698 T G 701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.69;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-1.731;SOR=0.789 GT:AD:DP:GQ:PL 0/1:44,37:81:99:730,0,966 3 41960006 rs1716975 T C 845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.445;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=1.772;SOR=0.538 GT:AD:DP:GQ:PL 0/1:34,35:69:99:874,0,812 3 41996136 rs2272007 T C 1725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.75;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.394;SOR=0.704 GT:AD:DP:GQ:PL 0/1:87,75:162:99:1754,0,1994 3 42236415 rs9851455 A G 2629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.323;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.314;SOR=0.696 GT:AD:DP:GQ:PL 0/1:134,98:232:99:2658,0,3249 3 42244321 rs9311309 G A 2954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=5.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.981;SOR=0.997 GT:AD:DP:GQ:PL 0/1:155,123:278:99:2983,0,3893 3 42251577 rs10530663 C CGGA 3060.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0;DB;DP=425;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.105;SOR=0.697 GT:AD:DP:GQ:PL 0/1:170,130:324:99:3098,0,6562 3 42264422 rs3733054 T C 1493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.94;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=7.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.488;SOR=1.33 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1522,0,1506 3 42305131 rs754635 C G 5256.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5285,537,0 3 42438754 rs13054 T C 737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.561;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.388;SOR=0.473 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,32:62:99:1|0:42438744_G_A:766,0,711 3 42599049 . TA T 131.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.66;ReadPosRankSum=-0.239;SOR=0.91 GT:AD:DP:GQ:PL 0/1:23,13:38:99:169,0,503 3 42728144 rs6805421 A G 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.497;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-0.786;SOR=0.745 GT:AD:DP:GQ:PL 0/1:97,77:174:99:2094,0,2197 3 42733468 rs123509 T C 2372.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2401,251,0 3 42735150 rs11079 T C 4911.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4940,465,0 3 42735274 rs339697 A G 4285.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4314,440,0 3 42907112 rs2228468 A C 5197.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.405 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5226,498,0 3 42917047 rs9865715 A G 7051.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7080,707,0 3 42956273 rs1427801 T C 6335.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6364,594,0 3 43073761 rs658958 G A 3109.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.634 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3138,293,0 3 43074430 rs2948619 A G 7927.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.54;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,178:178:99:1|1:43074430_A_G:7956,542,0 3 43074434 rs2936817 C T 7978.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.57;SOR=0.847 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,179:179:99:1|1:43074430_A_G:8007,545,0 3 43074871 rs588335 A G 9647.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,306:306:99:9676,918,0 3 43095101 rs536119 A G 2181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.46;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.789;SOR=0.799 GT:AD:DP:GQ:PL 0/1:82,94:176:99:2210,0,1908 3 43097710 rs664628 A G 1453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-1.441;SOR=0.552 GT:AD:DP:GQ:PL 0/1:57,63:120:99:1482,0,1387 3 43097765 rs3732858 G A 1908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.272;SOR=0.941 GT:AD:DP:GQ:PL 0/1:94,79:173:99:1937,0,2174 3 43121559 rs604033 C T 6337.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6366,624,0 3 43414318 rs6441771 A G 2996.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3025,323,0 3 43602803 rs3772165 C T 1401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.099;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=3.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=1.313;SOR=0.801 GT:AD:DP:GQ:PL 0/1:89,66:155:99:1430,0,2123 3 43607136 rs7616708 T C 556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.939;SOR=0.693 GT:AD:DP:GQ:PL 0/1:30,30:60:99:585,0,737 3 43618558 rs41289586 C T 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.226;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=0.971;SOR=0.572 GT:AD:DP:GQ:PL 0/1:131,87:218:99:1921,0,3041 3 44283672 rs9833423 T C 3327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.263;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-1.241;SOR=0.828 GT:AD:DP:GQ:PL 0/1:134,132:266:99:3356,0,2940 3 44283808 rs7645375 C A 3524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.284;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=1.66;SOR=0.654 GT:AD:DP:GQ:PL 0/1:146,145:291:99:3553,0,3302 3 44284584 rs9284879 G A 2125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.45;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.56;ReadPosRankSum=-0.814;SOR=0.564 GT:AD:DP:GQ:PL 0/1:66,80:146:99:2154,0,1727 3 44373517 . CT C 153.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.39;ReadPosRankSum=-0.38;SOR=1.473 GT:AD:DP:GQ:PL 0/1:21,14:40:99:191,0,453 3 44489880 rs11710965 T C 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.482;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.99;ReadPosRankSum=0.3;SOR=0.624 GT:AD:DP:GQ:PL 0/1:64,105:169:99:3068,0,1657 3 44540791 rs36046723 TTC T 8525.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.056;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;MQRankSum=0.274;QD=30.67;ReadPosRankSum=-0.455;SOR=0.752 GT:AD:DP:GQ:PL 1/1:2,276:278:99:8563,785,0 3 44607013 rs13081859 T C 2454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.044;SOR=0.838 GT:AD:DP:GQ:PL 0/1:94,102:196:99:2483,0,2244 3 44611896 rs9835485 A G 4931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.655;ClippingRankSum=0;DB;DP=381;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.9;MQRankSum=-2.357;QD=12.94;ReadPosRankSum=-1.1;SOR=0.708 GT:AD:DP:GQ:PL 0/1:195,186:381:99:4960,0,4903 3 44612050 rs9873604 C T 2956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.63;SOR=0.671 GT:AD:DP:GQ:PL 0/1:143,117:260:99:2985,0,3858 3 44869026 rs4682999 A T 2390.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.13;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2419,254,0 3 44869731 rs199969344 A G 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.933;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.08;SOR=0.936 GT:AD:DP:GQ:PL 0/1:40,35:75:99:745,0,830 3 44871505 rs11710339 A T 1018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.277;SOR=0.821 GT:AD:DP:GQ:PL 0/1:38,46:84:99:1047,0,903 3 44929287 rs2271087 G C 2050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.138;SOR=0.625 GT:AD:DP:GQ:PL 0/1:86,97:183:99:2079,0,1882 3 44943069 rs1995640 C T 2487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.591;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.143;SOR=0.651 GT:AD:DP:GQ:PL 0/1:119,107:226:99:2516,0,3105 3 44943389 rs1995641 G A 2101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=3.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.047;SOR=0.483 GT:AD:DP:GQ:PL 0/1:92,91:183:99:2130,0,2149 3 44948479 rs3749195 C T 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.868;SOR=0.575 GT:AD:DP:GQ:PL 0/1:119,83:202:99:1996,0,2973 3 44948590 rs9876921 G A 2446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.425;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.604;SOR=0.725 GT:AD:DP:GQ:PL 0/1:112,95:207:99:2475,0,2826 3 45052775 rs6794 G C 2406.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2435,246,0 3 45077123 rs13963 G A 9358.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9387,932,0 3 45127515 rs9874077 T C 4386.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4415,443,0 3 45134822 rs3749191 T C 6173.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6202,617,0 3 45153708 rs35501071 G A 2936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.252;SOR=0.581 GT:AD:DP:GQ:PL 0/1:127,119:246:99:2965,0,3071 3 45187785 rs2276862 C G 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.331;SOR=0.759 GT:AD:DP:GQ:PL 0/1:53,70:123:99:1716,0,1293 3 45267058 rs33750 G A 782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-1.115;SOR=0.303 GT:AD:DP:GQ:PL 0/1:40,33:73:99:811,0,1087 3 45267310 rs41118 C T 10125.8 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.46;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,233:233:99:1|1:45267310_C_T:10154,700,0 3 45267321 rs395917 C T 10361.8 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.54;SOR=0.71 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,238:238:99:1|1:45267310_C_T:10390,724,0 3 45527218 rs7610357 T C 2542.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.64;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2571,274,0 3 45533224 rs2128361 G A 7285.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7314,727,0 3 45542083 rs2306522 T C 2246.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=1.394 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2275,216,0 3 45559519 rs2170549 T C 3521.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3550,360,0 3 45565554 rs267220 A G 3049.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3078,297,0 3 45637253 rs267237 C T 5576.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5605,543,0 3 45637439 rs267236 T C 5879.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5908,542,0 3 45677635 rs11379880 C CT 3195.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.454;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=36.32;ReadPosRankSum=1.008;SOR=0.74 GT:AD:DP:GQ:PL 1/1:2,86:88:99:3233,232,0 3 45677638 rs5848762 CA C 4125.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.85;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,92:94:99:4154,286,0 3 45776875 rs111484566 CT C 38.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.574;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.42;ReadPosRankSum=1.574;SOR=0.885 GT:AD:DP:GQ:PL 0/1:77,15:105:76:76,0,1827 3 45779136 rs1468542 A T 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.68;SOR=0.834 GT:AD:DP:GQ:PL 0/1:51,47:98:99:1056,0,1157 3 45813993 rs2276858 G A 1077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=0.971;SOR=0.801 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1106,0,1718 3 45817418 rs758386 A G 8912.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.13;ReadPosRankSum=1.316;SOR=1.041 GT:AD:DP:GQ:PL 1/1:2,304:306:99:8941,868,0 3 45996761 rs1463680 G A 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.819;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.325;SOR=0.841 GT:AD:DP:GQ:PL 0/1:76,48:124:99:1175,0,1882 3 46000870 rs13069079 G A 1956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.781;SOR=0.815 GT:AD:DP:GQ:PL 0/1:84,85:169:99:1985,0,2135 3 46007823 rs13079478 G T 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.312;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.34;ReadPosRankSum=-0.615;SOR=1.051 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,74:151:99:0|1:46007823_G_T:2948,0,4375 3 46007825 rs13059238 T C 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.725;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.48;ReadPosRankSum=-0.442;SOR=0.883 GT:AD:DP:GQ:PGT:PID:PL 0/1:81,77:158:99:0|1:46007823_G_T:2948,0,4375 3 46008087 rs13079869 G A 2465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.448;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-1.072;SOR=0.533 GT:AD:DP:GQ:PL 0/1:112,104:216:99:2494,0,2688 3 46009487 rs33910087 G A 2350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.725;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=5.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.258;SOR=1.046 GT:AD:DP:GQ:PL 0/1:104,90:194:99:2379,0,2599 3 46009864 rs3733100 C G 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=6.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-1.2;SOR=1.132 GT:AD:DP:GQ:PL 0/1:120,89:209:99:2294,0,3306 3 46010007 rs13071283 T C 3122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.274;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=0.569;SOR=0.784 GT:AD:DP:GQ:PL 0/1:115,114:229:99:3151,0,2762 3 46010077 rs4683158 C T 2331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.385;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=5.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.586;SOR=1.071 GT:AD:DP:GQ:PL 0/1:121,95:216:99:2360,0,3136 3 46021218 rs4682801 G T 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=-0.684;SOR=0.434 GT:AD:DP:GQ:PL 0/1:53,66:119:99:1595,0,1387 3 46063329 rs2230322 T C 3032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.016;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.076;SOR=0.809 GT:AD:DP:GQ:PL 0/1:128,114:242:99:3061,0,3002 3 46245824 rs58092235 TAA T 119.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.162;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.99;ReadPosRankSum=-0.512;SOR=0.475 GT:AD:DP:GQ:PL 0/1:24,6:40:99:157,0,838 3 46399208 rs1799864 G A 2553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-1.265;SOR=0.741 GT:AD:DP:GQ:PL 0/1:79,110:189:99:2582,0,1838 3 46449978 rs11266744 A C 4676.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4705,447,0 3 46450070 rs3204849 T A 4431.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4460,438,0 3 46480801 rs9110 A G 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.686;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.383;SOR=1.048 GT:AD:DP:GQ:PL 0/1:87,62:149:99:1528,0,2133 3 46480958 rs2073495 C G 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.252;SOR=0.826 GT:AD:DP:GQ:PL 0/1:89,78:167:99:1822,0,2243 3 46484964 rs1042073 G A 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.584;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-1.144;SOR=0.892 GT:AD:DP:GQ:PL 0/1:98,86:184:99:2007,0,2217 3 46490366 rs2230895 G A 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=1.919;SOR=0.658 GT:AD:DP:GQ:PL 0/1:98,83:181:99:1943,0,2439 3 46490474 rs2230894 G A 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.736;SOR=0.644 GT:AD:DP:GQ:PL 0/1:92,96:188:99:2185,0,2151 3 46501213 rs1126478 T C 2278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=5.525;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=0.105;QD=13.4;ReadPosRankSum=1.058;SOR=0.722 GT:AD:DP:GQ:PL 0/1:76,94:170:99:2307,0,1633 3 46501268 rs1126477 C T 2218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.907;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=6.564;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=0.202;QD=12.9;ReadPosRankSum=0.074;SOR=1.148 GT:AD:DP:GQ:PL 0/1:80,92:172:99:2247,0,1735 3 46501284 rs10662431 C CCTT 6987.73 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.46;QD=44.51;SOR=1.164 GT:AD:DP:GQ:PL 1/1:0,157:157:99:7025,481,0 3 46574256 rs9849400 C T 902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.327;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-1.696;SOR=0.576 GT:AD:DP:GQ:PL 0/1:35,37:72:99:931,0,1125 3 46574418 rs1402152 A G 1065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.643;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.707;SOR=0.787 GT:AD:DP:GQ:PL 0/1:56,42:98:99:1094,0,1295 3 46580591 rs17078944 G T 933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.007;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-1.352;SOR=0.715 GT:AD:DP:GQ:PL 0/1:66,41:107:99:962,0,1629 3 46620614 rs11130097 T C 1427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.691;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=-0.146;SOR=0.964 GT:AD:DP:GQ:PL 0/1:101,63:164:99:1456,0,2300 3 46658737 rs9832679 A G 4857.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4886,520,0 3 46713457 rs7625303 C G 3738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.579;SOR=0.773 GT:AD:DP:GQ:PL 0/1:180,159:339:99:3767,0,4459 3 46729757 rs7642448 C G 2411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.477;SOR=0.765 GT:AD:DP:GQ:PL 0/1:85,89:174:99:2440,0,2244 3 46751073 rs10578999 TAAG T 3659.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.611;QD=19.57;ReadPosRankSum=-0.544;SOR=0.602 GT:AD:DP:GQ:PL 0/1:91,96:198:99:3697,0,3503 3 46753976 rs9815362 T C 1641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.777;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-1.771;SOR=0.843 GT:AD:DP:GQ:PL 0/1:88,71:159:99:1670,0,2034 3 47018214 rs936181 T C 7377.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7406,720,0 3 47036756 rs11720139 C G 9306.77 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,303:303:99:9335,909,0 3 47043622 rs2305635 G A 5874.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5903,578,0 3 47044122 rs11928558 A T 7452.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=1.299 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7481,681,0 3 47139465 . G T 1255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.402;SOR=0.576 GT:AD:DP:GQ:PL 0/1:61,59:120:99:1284,0,1406 3 47449058 rs900688 T C 4770.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.08;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4799,420,0 3 47451411 rs3736177 C T 7076.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7105,709,0 3 47452087 rs900689 G A 9792.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.14;SOR=1.071 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,227:227:99:1|1:47452087_G_A:9821,691,0 3 47452118 rs6780013 G A 9965.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.01;SOR=0.701 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,243:243:99:1|1:47452087_G_A:9994,730,0 3 47454399 rs6789730 G A 1993.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=4.868;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=18.46;ReadPosRankSum=-1.197;SOR=3.18 GT:AD:DP:GQ:PL 1/1:4,104:108:99:2022,187,0 3 47462200 rs900690 T C 8065.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=30.79;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8094,784,0 3 47604270 . T TG 168.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.799;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=5.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.01;ReadPosRankSum=-1.931;SOR=0.931 GT:AD:DP:GQ:PL 0/1:42,14:64:99:206,0,1082 3 47953405 rs4858871 A C 4523.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.02;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4552,410,0 3 47953733 rs34025851 C A 4763.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4792,474,0 3 47956424 rs1137524 C T 3977.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4006,421,0 3 47958037 rs1060407 G T 4346.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4375,423,0 3 48016946 rs79021891 C T 588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.056;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=1.677;SOR=0.622 GT:AD:DP:GQ:PL 0/1:45,26:71:99:617,0,1167 3 48282651 rs35806621 TGCGC T 6756.73 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.21;QD=42.76;SOR=1.29 GT:AD:DP:GQ:PL 1/1:0,158:158:99:6794,475,0 3 48282695 rs9847953 A G 5175.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.06;QD=28.44;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5204,545,0 3 48309828 rs11718329 C G 5929.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.31;SOR=1.237 GT:AD:DP:GQ:PL 1/1:0,178:180:99:5958,535,0 3 48360992 rs11718350 T G 4304.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4333,423,0 3 48422235 rs6784322 T A 2900.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2929,273,0 3 48451300 rs3214871 AG A 6605.73 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=36.5;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6643,545,0 3 48454468 rs3214041 C T 2040.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.59;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2069,177,0 3 48461313 rs2362450 C G 6978.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.21;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,204:204:99:7007,612,0 3 48463618 rs9883759 T A 3060.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3089,288,0 3 48465206 rs61729213 C T 2671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.223;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-1.703;SOR=0.633 GT:AD:DP:GQ:PL 0/1:125,110:235:99:2700,0,3469 3 48474249 rs2279077 A G 5853.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5882,584,0 3 48476431 rs13062723 C G 6993.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.53;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,215:215:99:7022,645,0 3 48505964 rs2242150 C A 5051.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.887;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.451;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.72;ReadPosRankSum=1.061;SOR=1.253 GT:AD:DP:GQ:PL 1/1:1,169:170:99:5080,498,0 3 48508585 rs11797 C T 10390.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,340:340:99:10419,1018,0 3 48602523 rs138595277 G GGGC 5561.73 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=44.49;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,125:125:99:5599,376,0 3 48625266 rs1264194 T C 5404.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5433,540,0 3 48638801 rs62618742 C T 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-1.969;SOR=0.685 GT:AD:DP:GQ:PL 0/1:85,67:152:99:1483,0,2258 3 48727112 rs4858798 G A 3904.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3933,383,0 3 48732816 rs184044431 C T 2667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.331;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.05;SOR=0.688 GT:AD:DP:GQ:PL 0/1:129,112:241:99:2696,0,3141 3 48897078 rs6414612 A G 1501.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1530,159,0 3 49004723 rs6446196 A G 5082.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.37;SOR=1.354 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5111,470,0 3 49044767 rs6781790 C T 4115.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=2.247 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4144,381,0 3 49053219 rs7100 A G 7901.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=3.111;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.16;ReadPosRankSum=0.96;SOR=0.309 GT:AD:DP:GQ:PL 1/1:1,261:262:99:7930,748,0 3 49054692 rs3087866 T C 6605.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6634,633,0 3 49137904 rs4521268 G T 3863.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3892,378,0 3 49161660 rs34290943 T C 2628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.156;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=0.105;SOR=0.712 GT:AD:DP:GQ:PL 0/1:100,103:203:99:2657,0,2454 3 49162284 rs34759087 C T 2133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.446;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.901;SOR=0.763 GT:AD:DP:GQ:PL 0/1:84,87:171:99:2162,0,2444 3 49200627 rs4955418 A G 10996.8 PASS AC=2;AF=1;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,361:361:99:11025,1085,0 3 49200692 rs4955419 T A 10283.8 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,335:335:99:10312,1005,0 3 49273996 rs12631989 C T 2322.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=2.062 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2351,222,0 3 49293819 rs147025639 T G 2538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.902;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.513;SOR=0.662 GT:AD:DP:GQ:PL 0/1:107,103:210:99:2567,0,2597 3 49365269 rs6795772 C T 2578.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.218 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2607,261,0 3 49394834 rs1050450 G A 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=53.08;MQRankSum=1.357;QD=13.84;ReadPosRankSum=0.381;SOR=0.627 GT:AD:DP:GQ:PL 0/1:69,78:147:99:2062,0,1794 3 49395673 rs28362588 GGCCGCC G,GGCC 7474.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=56.71;QD=41.07;SOR=1.198 GT:AD:DP:GQ:PL 1/2:0,81,101:182:99:7512,4181,4102,3342,0,3037 3 49455330 rs11715915 C T 2867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.219;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-1.936;SOR=0.599 GT:AD:DP:GQ:PL 0/1:153,125:278:99:2896,0,3632 3 49548008 rs2131107 C G 5598.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5627,540,0 3 49570200 rs1801143 C T 2714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.3;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.959;SOR=0.704 GT:AD:DP:GQ:PL 0/1:98,115:213:99:2743,0,2489 3 49689210 rs34762726 G A 3838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=0.971;SOR=0.558 GT:AD:DP:GQ:PL 0/1:136,154:290:99:3867,0,3411 3 49690199 rs4855885 G A 3759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=3.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.836;SOR=0.615 GT:AD:DP:GQ:PL 0/1:186,165:351:99:3788,0,4507 3 49690496 rs11709525 C T 3585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.605;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.566;SOR=0.757 GT:AD:DP:GQ:PL 0/1:115,147:262:99:3614,0,2531 3 49701983 rs9858542 G A 1906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.824;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.12;SOR=0.701 GT:AD:DP:GQ:PL 0/1:110,79:189:99:1935,0,2789 3 49714225 rs1131095 T C 3067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.892;SOR=0.593 GT:AD:DP:GQ:PL 0/1:115,123:238:99:3096,0,3005 3 49721532 rs3197999 G A 4764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=0.367;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.199;SOR=0.718 GT:AD:DP:GQ:PL 0/1:180,206:386:99:4793,0,4137 3 49721798 rs13085791 C A 4025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.5;MQ=58.82;MQRankSum=-0.376;QD=11.31;ReadPosRankSum=-1.817;SOR=0.63 GT:AD:DP:GQ:PL 0/1:179,177:356:99:4054,0,4188 3 49723726 . G GC 946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.37;MQRankSum=2.219;QD=20.14;ReadPosRankSum=2.428;SOR=2.303 GT:AD:DP:GQ:PL 0/1:8,39:62:75:964,0,75 3 49723823 rs7431215 A G 1020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=26.267;MLEAC=1;MLEAF=0.5;MQ=53.93;MQRankSum=-11.765;QD=3.21;ReadPosRankSum=-2.02;SOR=1.551 GT:AD:DP:GQ:PL 0/1:251,67:318:99:1049,0,6746 3 49724183 rs201944579 C G 240.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=39.788;MLEAC=1;MLEAF=0.5;MQ=47.56;MQRankSum=-7.984;QD=1.15;ReadPosRankSum=-0.93;SOR=3.402 GT:AD:DP:GQ:PL 0/1:180,30:210:99:269,0,5596 3 49724808 rs3020779 T C 3436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.86;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-3.379;QD=12.92;ReadPosRankSum=-0.899;SOR=0.679 GT:AD:DP:GQ:PL 0/1:127,139:266:99:3465,0,3342 3 49726028 rs62262685 T C 480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.729;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.5;MQ=56.1;MQRankSum=-9.95;QD=2.7;ReadPosRankSum=3.002;SOR=0.536 GT:AD:DP:GQ:PL 0/1:137,41:178:99:509,0,3470 3 49726070 rs62262686 G A 405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.5;MQ=54.51;MQRankSum=-6.885;QD=2.24;ReadPosRankSum=0.765;SOR=1.082 GT:AD:DP:GQ:PL 0/1:146,35:181:99:434,0,4083 3 49739507 rs1491985 G C 1759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.45;ReadPosRankSum=0.054;SOR=0.668 GT:AD:DP:GQ:PL 0/1:45,62:107:99:1788,0,1130 3 49753003 rs34614773 T G 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-1.087;SOR=0.791 GT:AD:DP:GQ:PL 0/1:109,127:236:99:2819,0,2542 3 49760039 rs1466685 T C 6167.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6196,614,0 3 49832788 rs73079003 G A 1843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=1.568;SOR=0.798 GT:AD:DP:GQ:PL 0/1:100,81:181:99:1872,0,2571 3 49842881 rs11400401 T TG 581.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.43;ReadPosRankSum=0.656;SOR=0.471 GT:AD:DP:GQ:PL 0/1:44,25:69:99:619,0,1281 3 49848414 rs28535523 C T 972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.568;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=1.085;SOR=0.56 GT:AD:DP:GQ:PL 0/1:75,49:124:99:1001,0,2032 3 49866584 rs35129566 T G 2715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=6.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.539;SOR=0.462 GT:AD:DP:GQ:PL 0/1:96,116:212:99:2744,0,2141 3 49898000 rs2777888 A G 4089.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.98;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4118,371,0 3 49898273 rs2681781 A G 4966.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.25;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4995,438,0 3 49899795 rs3796386 G A 1336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.166;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=9.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.345;SOR=0.271 GT:AD:DP:GQ:PL 0/1:71,60:131:99:1365,0,1910 3 49924940 rs1062633 T C 5748.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5777,582,0 3 49927503 rs12489386 G T 2053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.65;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.571;SOR=0.936 GT:AD:DP:GQ:PL 0/1:101,87:188:99:2082,0,2532 3 49928691 rs7433231 T C 5686.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5715,546,0 3 49929025 rs55643042 C A 1940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.609;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=4.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.726;SOR=1.093 GT:AD:DP:GQ:PL 0/1:97,74:171:99:1969,0,2456 3 49936102 rs2230590 T C 5248.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5277,489,0 3 49936715 rs41291716 G A 1441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.912;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-1.595;SOR=0.462 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1470,0,1462 3 49940078 rs2230593 C T 5172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.135;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.25;ReadPosRankSum=-0.341;SOR=0.739 GT:AD:DP:GQ:PL 0/1:173,190:363:99:5201,0,4317 3 49946812 rs61729114 G A 2408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.44;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.03;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-1.77;SOR=0.6 GT:AD:DP:GQ:PL 0/1:124,104:228:99:2437,0,3043 3 49949071 rs868891 A G 3021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.443;SOR=0.614 GT:AD:DP:GQ:PL 0/1:119,118:237:99:3050,0,3018 3 50114515 rs7061 C T 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=10.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=1.211;SOR=1.047 GT:AD:DP:GQ:PL 0/1:83,89:172:99:2221,0,1931 3 50144951 rs1061474 T C 885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.118;SOR=0.746 GT:AD:DP:GQ:PL 0/1:40,37:77:99:914,0,1015 3 50153356 rs1138536 T C 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=6.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=0.684;SOR=0.589 GT:AD:DP:GQ:PL 0/1:58,45:103:99:994,0,1351 3 50155887 rs112672304 TGA T 510.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.84;ReadPosRankSum=1.027;SOR=0.98 GT:AD:DP:GQ:PL 0/1:151,29:192:99:548,0,4669 3 50212512 rs2624833 G T 705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.39;SOR=0.828 GT:AD:DP:GQ:PL 0/1:29,33:62:99:734,0,684 3 50222926 rs1046956 T A 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.021;SOR=0.556 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1433,0,1610 3 50251833 rs5848902 A AG 4066.73 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=35.67;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,114:114:99:4104,346,0 3 50306752 rs67324803 G GC 3258.73 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=31.04;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3296,315,0 3 50329826 rs1076872 A G 2622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.259;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=1.098;SOR=0.536 GT:AD:DP:GQ:PL 0/1:101,93:194:99:2651,0,2762 3 50332697 rs13100173 G A 3011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.77;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.26;SOR=0.624 GT:AD:DP:GQ:PL 0/1:137,126:263:99:3040,0,3683 3 50357869 rs709210 A C 2576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-0.495;SOR=0.595 GT:AD:DP:GQ:PL 0/1:147,120:267:99:2605,0,3556 3 50597092 rs1034405 G A 4357.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4386,435,0 3 50609123 rs636168 T C 2409.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2438,243,0 3 50609624 rs2232248 T G 6300.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.219 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6329,596,0 3 50645793 rs622502 C G 2826.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.44 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2855,279,0 3 51273773 rs1480361 T C 2667.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2696,267,0 3 51274902 rs11386090 T TA 1606.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.47;ReadPosRankSum=2.695;SOR=0.612 GT:AD:DP:GQ:PL 0/1:36,51:87:99:1644,0,1074 3 51393706 rs72581996 C CAG 5760.73 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.65;QD=43.98;SOR=1.574 GT:AD:DP:GQ:PL 1/1:0,131:131:99:5798,394,0 3 51422766 rs13091931 G T 3157.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.585;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.958;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=41.01;ReadPosRankSum=0.914;SOR=0.373 GT:AD:DP:GQ:PL 1/1:4,73:77:99:3186,310,0 3 51812952 rs11130296 C T 3204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.748;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.171;SOR=0.658 GT:AD:DP:GQ:PL 0/1:126,128:254:99:3233,0,3089 3 51907736 rs7635409 A G 597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.131;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-0.934;SOR=1.112 GT:AD:DP:GQ:PL 0/1:26,23:49:99:626,0,663 3 51929360 rs34574240 GA G 3269.73 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.25;SOR=1.903 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3307,360,0 3 51930850 rs57859638 T C 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.373;QD=14.83;ReadPosRankSum=-1.094;SOR=0.85 GT:AD:DP:GQ:PL 0/1:35,58:93:99:1407,0,796 3 51978220 rs28547534 A G 4353.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4382,423,0 3 51990119 rs28587738 A C 7996.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8025,764,0 3 51990315 rs28651222 A G 8937.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8966,857,0 3 51990646 rs73082754 C A 2984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-1.292;SOR=0.752 GT:AD:DP:GQ:PL 0/1:112,123:235:99:3013,0,2904 3 52012320 rs41292350 G A 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.892;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=1.453;SOR=0.749 GT:AD:DP:GQ:PL 0/1:76,55:131:99:1278,0,1833 3 52027853 . T TCCTTGGCCTTGG 3233.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.716;QD=22.93;ReadPosRankSum=0.204;SOR=0.665 GT:AD:DP:GQ:PL 0/1:69,72:141:99:3271,0,3467 3 52236762 rs352169 G A 1202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.776;SOR=0.73 GT:AD:DP:GQ:PL 0/1:60,52:112:99:1231,0,1595 3 52237970 rs352168 C T 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.287;SOR=0.612 GT:AD:DP:GQ:PL 0/1:91,73:164:99:1605,0,2333 3 52256697 rs352140 C T 2672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.48;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.74;SOR=0.679 GT:AD:DP:GQ:PL 0/1:111,102:213:99:2701,0,2962 3 52264907 rs352143 T C 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=4.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.893;SOR=0.46 GT:AD:DP:GQ:PL 0/1:148,114:262:99:2751,0,3686 3 52279951 rs114645176 T G 2385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.75;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=1.78;SOR=0.738 GT:AD:DP:GQ:PL 0/1:92,90:182:99:2414,0,2137 3 52293859 rs3210487 A G 1898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=0.116;SOR=0.527 GT:AD:DP:GQ:PL 0/1:71,81:152:99:1927,0,1698 3 52294481 . A C 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.012;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.57;ReadPosRankSum=1.623;SOR=0.75 GT:AD:DP:GQ:PL 0/1:80,46:126:99:982,0,1959 3 52325039 rs35976326 G A 1838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.534;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=1.033;SOR=0.592 GT:AD:DP:GQ:PL 0/1:101,80:181:99:1867,0,2503 3 52325759 rs2276834 A G 1134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.124;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=4.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-0.598;SOR=1.195 GT:AD:DP:GQ:PL 0/1:76,46:122:99:1163,0,1980 3 52391735 rs11714402 A C 3268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.576;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.537;SOR=0.653 GT:AD:DP:GQ:PL 0/1:121,135:256:99:3297,0,2782 3 52400740 rs3752819 G C 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.093;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.068;SOR=0.652 GT:AD:DP:GQ:PL 0/1:76,64:140:99:1727,0,1915 3 52400878 rs199740667 G A 2751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=1.867;SOR=0.731 GT:AD:DP:GQ:PL 0/1:143,119:262:99:2780,0,3699 3 52404111 rs746239 G A 3315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.098;SOR=0.681 GT:AD:DP:GQ:PL 0/1:108,143:251:99:3344,0,2633 3 52409421 rs56002041 A G 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.554;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=3.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.336;SOR=0.978 GT:AD:DP:GQ:PL 0/1:99,62:161:99:1734,0,2407 3 52415865 rs770284 A G 8471.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=1.099 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8500,884,0 3 52428988 rs11708581 C A 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=0.88;SOR=0.721 GT:AD:DP:GQ:PL 0/1:122,99:221:99:2063,0,3181 3 52430698 rs365048 A G 7520.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7549,728,0 3 52453893 rs498778 C T 3529.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3558,386,0 3 52472172 . C T 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.3;ClippingRankSum=0;DP=146;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-1.976;SOR=0.442 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1773,0,1979 3 52478914 rs114942616 C T 1699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=-1.569;QD=13.08;ReadPosRankSum=-1.06;SOR=0.862 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1728,0,1657 3 52492707 rs1541495 T C 2720.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2749,267,0 3 52506426 rs6784615 C T 2500.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2529,252,0 3 52510592 rs9856575 G A 5093.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5122,525,0 3 52512318 rs2109559 A G 3809.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3838,394,0 3 52519854 rs17263770 G C 1583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-1.801;SOR=0.652 GT:AD:DP:GQ:PL 0/1:66,77:143:99:1612,0,1483 3 52523405 rs887515 C T 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.201;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.94;SOR=0.766 GT:AD:DP:GQ:PL 0/1:60,48:108:99:1195,0,1576 3 52540773 rs1010553 T C 3598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.538;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=0.392;SOR=0.666 GT:AD:DP:GQ:PL 0/1:114,143:257:99:3627,0,2564 3 52544470 rs9835659 A G 7367.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7396,739,0 3 52554304 rs7630214 G C 8543.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8572,884,0 3 52555957 rs9853056 T C 2400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=1.235;SOR=0.54 GT:AD:DP:GQ:PL 0/1:86,102:188:99:2429,0,2052 3 52556890 rs4434138 A G 3477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.99;ReadPosRankSum=0.365;SOR=0.75 GT:AD:DP:GQ:PL 0/1:97,135:232:99:3506,0,2417 3 52557038 rs4234633 C T 3076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=0.529;SOR=0.644 GT:AD:DP:GQ:PL 0/1:116,127:243:99:3105,0,3013 3 52558008 rs13303 T C 3029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.202;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-1.306;SOR=0.704 GT:AD:DP:GQ:PL 0/1:123,128:251:99:3058,0,2881 3 52558133 rs13621 T C 2178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.205;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.266;SOR=0.761 GT:AD:DP:GQ:PL 0/1:102,89:191:99:2207,0,2508 3 52558904 rs34005367 A T 2294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.27;SOR=0.628 GT:AD:DP:GQ:PL 0/1:89,90:179:99:2323,0,2298 3 52567617 rs66782572 A G 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-1.397;SOR=0.647 GT:AD:DP:GQ:PL 0/1:121,97:218:99:2037,0,2708 3 52584431 rs34372721 T TCTC 1409.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.43;ReadPosRankSum=1.388;SOR=0.507 GT:AD:DP:GQ:PL 0/1:33,36:69:99:1447,0,1601 3 52584787 rs2251219 T C 1149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-0.817;SOR=0.719 GT:AD:DP:GQ:PL 0/1:46,53:99:99:1178,0,965 3 52610651 rs17264436 T A 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.023;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=2.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.133;SOR=1.096 GT:AD:DP:GQ:PL 0/1:42,39:81:99:928,0,951 3 52637631 rs34341044 T C 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=0.957;SOR=0.766 GT:AD:DP:GQ:PL 0/1:55,36:91:99:799,0,1412 3 52643685 rs3755806 T C 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.622;SOR=0.812 GT:AD:DP:GQ:PL 0/1:41,39:80:99:1010,0,1129 3 52676065 rs11719685 C T 251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=1.328;QD=8.12;ReadPosRankSum=-0.073;SOR=0.787 GT:AD:DP:GQ:PL 0/1:17,14:38:99:280,0,578 3 52721305 rs11177 G A 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.117;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.168;SOR=0.676 GT:AD:DP:GQ:PL 0/1:49,38:87:99:1031,0,1065 3 52727257 rs2289247 G A 1149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=4.868;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-1;QD=11.06;ReadPosRankSum=-1.538;SOR=1.005 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1178,0,1276 3 52740182 rs6617 C G 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.624;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=2.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.116;SOR=0.83 GT:AD:DP:GQ:PL 0/1:112,89:201:99:2369,0,2911 3 52797634 rs1029871 G C 691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=0.253;SOR=1.042 GT:AD:DP:GQ:PL 0/1:50,31:81:99:720,0,1238 3 52800284 rs2230535 T C 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=2.08;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.11;ReadPosRankSum=0.517;SOR=0.912 GT:AD:DP:GQ:PL 0/1:23,55:78:99:1441,0,434 3 52802402 rs2230534 A C 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.213;SOR=0.752 GT:AD:DP:GQ:PL 0/1:82,71:153:99:1551,0,1889 3 52818301 rs11715487 G A 1114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.889;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.319;SOR=0.525 GT:AD:DP:GQ:PL 0/1:53,52:105:99:1143,0,1441 3 52820981 rs678 A T 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.38;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.952;QD=19.08;ReadPosRankSum=1.375;SOR=0.85 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,74:139:99:0|1:52820981_A_T:2680,0,3443 3 52821011 rs1042779 A G 3021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.31;ReadPosRankSum=0.327;SOR=0.577 GT:AD:DP:GQ:PGT:PID:PL 0/1:78,87:165:99:0|1:52820981_A_T:3050,0,3808 3 52821992 rs68094128 CT C 1477.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=3.015;SOR=0.527 GT:AD:DP:GQ:PL 0/1:63,47:110:99:1515,0,2119 3 52825528 rs1075653 T C 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.112;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=1.111;SOR=0.781 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1451,0,1499 3 52825585 rs9324 T C 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.849;SOR=0.624 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1595,0,2194 3 52833805 rs3617 C A 1142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=6.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=0.403;SOR=0.762 GT:AD:DP:GQ:PL 0/1:72,52:124:99:1171,0,1910 3 52836337 rs9848554 G A 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.389;SOR=0.705 GT:AD:DP:GQ:PL 0/1:63,71:134:99:1687,0,1555 3 52837855 rs2710331 T C 2077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=-0.136;SOR=0.76 GT:AD:DP:GQ:PL 0/1:65,86:151:99:2106,0,1551 3 52848207 rs77347777 C T 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.62;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.298;SOR=0.802 GT:AD:DP:GQ:PL 0/1:65,77:142:99:1783,0,1685 3 52852060 rs2245538 T C 1557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.234;SOR=0.7 GT:AD:DP:GQ:PL 0/1:58,61:119:99:1586,0,1500 3 52852538 rs4687657 G T 1202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.588;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.282;SOR=0.818 GT:AD:DP:GQ:PL 0/1:55,52:107:99:1231,0,1259 3 52853401 rs3821831 C T 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=-0.18;SOR=0.497 GT:AD:DP:GQ:PL 0/1:121,77:198:99:1674,0,3148 3 52857940 rs141154056 C T 1886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=1.319;SOR=0.677 GT:AD:DP:GQ:PL 0/1:107,84:191:99:1915,0,2652 3 52864584 rs2071042 A G 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.97;ReadPosRankSum=-0.018;SOR=0.642 GT:AD:DP:GQ:PL 0/1:83,46:129:99:928,0,1941 3 52864635 rs2276818 A G 901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.904;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=7.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.91;ReadPosRankSum=1.539;SOR=1.394 GT:AD:DP:GQ:PL 0/1:77,37:114:99:930,0,1762 3 52867715 rs6787916 G C 10433.8 PASS AC=2;AF=1;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,347:347:99:10462,1040,0 3 52877720 rs4687668 T C 7657.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,268:268:99:7686,803,0 3 52878825 rs7629528 C A 4208.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=28.83;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4237,437,0 3 53125922 rs11242 T C 2632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.876;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=-0.479;SOR=0.799 GT:AD:DP:GQ:PL 0/1:84,102:186:99:2661,0,1924 3 53213657 rs2230493 T C 3363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.811;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-0.653;SOR=0.531 GT:AD:DP:GQ:PL 0/1:114,134:248:99:3392,0,2550 3 53222761 rs2306574 C T 5545.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=1.325 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5574,560,0 3 53223927 rs1075865 C G 5339.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5368,548,0 3 53224002 rs900495 T C 6267.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6296,612,0 3 53259850 rs3163 C T 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.511;SOR=0.666 GT:AD:DP:GQ:PL 0/1:104,94:198:99:2314,0,2710 3 53260903 rs2279323 G C 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.728;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=2.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.29;SOR=0.913 GT:AD:DP:GQ:PL 0/1:111,88:199:99:2158,0,2665 3 53263279 rs3736156 A G 7450.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7479,685,0 3 53264485 rs1131728 A G 2150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.202;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-0.271;SOR=0.853 GT:AD:DP:GQ:PL 0/1:85,83:168:99:2179,0,2082 3 53267155 rs2242301 G A 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=1.31;SOR=0.542 GT:AD:DP:GQ:PL 0/1:48,74:122:99:1686,0,1019 3 53267296 rs2242302 G A 1091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.307;SOR=0.463 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1120,0,1277 3 53269046 rs1051485 T C 2402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.426;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.794;SOR=0.799 GT:AD:DP:GQ:PL 0/1:111,104:215:99:2431,0,2565 3 53269163 rs1051483 G A 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=1.718;SOR=0.56 GT:AD:DP:GQ:PL 0/1:85,77:162:99:1848,0,2188 3 53321631 rs9628 A C 575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.398;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=0.711;SOR=0.724 GT:AD:DP:GQ:PL 0/1:41,28:69:99:604,0,929 3 53324819 rs201612547 ATGGCAC A 942.73 PASS AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=42.85;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,22:22:66:980,66,0 3 53766026 rs2612033 T C 1303.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1332,126,0 3 53857676 rs17053532 C T 2926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.068;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.382;SOR=0.833 GT:AD:DP:GQ:PL 0/1:120,129:249:99:2955,0,3242 3 53857803 rs12676 A C 3585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.469;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.299;SOR=0.758 GT:AD:DP:GQ:PL 0/1:143,137:280:99:3614,0,3771 3 53857917 rs9001 T G 4283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=3.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=1.369;SOR=0.869 GT:AD:DP:GQ:PL 0/1:162,183:345:99:4312,0,3860 3 53882673 rs5849009 G GT 3050.73 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=29.33;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3088,313,0 3 53883722 rs1025689 C G 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.202;SOR=0.569 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1202,0,1420 3 53886912 rs3733075 C T 1089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.388;SOR=0.788 GT:AD:DP:GQ:PL 0/1:62,48:110:99:1118,0,1479 3 53905308 rs1046677 T C 2511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.896;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-1.278;SOR=0.593 GT:AD:DP:GQ:PL 0/1:112,102:214:99:2540,0,2640 3 53906513 rs4687757 G A 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.416;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=3.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=1.043;SOR=0.986 GT:AD:DP:GQ:PL 0/1:108,78:186:99:1846,0,2587 3 53910109 . T TG 857.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.784;ClippingRankSum=0;DP=156;ExcessHet=3.0103;FS=5.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.7;ReadPosRankSum=1.914;SOR=1.21 GT:AD:DP:GQ:PL 0/1:84,44:129:99:895,0,2079 3 53910122 rs62752960 G A 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=1.312;SOR=0.869 GT:AD:DP:GQ:PL 0/1:79,46:125:99:1072,0,2125 3 53910633 rs13073855 G C 103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.8;ReadPosRankSum=1.161;SOR=0.634 GT:AD:DP:GQ:PL 0/1:28,9:37:99:132,0,779 3 53912380 rs34549821 G A 733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=4.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.325;SOR=1.051 GT:AD:DP:GQ:PL 0/1:33,35:68:99:762,0,773 3 54156724 rs115882849 G A 4198.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.26;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4227,459,0 3 54354510 rs9879885 T C 2114.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2143,216,0 3 54798258 rs3732748 G A 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.276;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=5.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.656;SOR=0.388 GT:AD:DP:GQ:PL 0/1:68,63:131:99:1468,0,1828 3 54919351 rs10510774 A G 2097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.164;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=0.183;SOR=0.788 GT:AD:DP:GQ:PL 0/1:62,86:148:99:2126,0,1364 3 54930773 rs17253119 A G 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.465;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-0.295;SOR=0.848 GT:AD:DP:GQ:PL 0/1:71,57:128:99:1387,0,1667 3 54961949 rs4245920 C T 2474.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2503,249,0 3 56591278 rs150150392 T TGGGGTAAGCA 8195.73 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.87;QD=43.36;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:8233,586,0 3 56597954 rs6769055 C T 4141.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4170,405,0 3 56627048 rs1388256 A G 2914.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2943,282,0 3 56627598 rs1491170 A G 3348.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3377,356,0 3 56628031 rs7637449 G A 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.081;SOR=0.767 GT:AD:DP:GQ:PL 0/1:51,57:108:99:1252,0,1125 3 56650051 rs77152637 A ACTT 603.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=2.004;SOR=0.838 GT:AD:DP:GQ:PL 0/1:38,18:56:99:641,0,1776 3 56667682 rs9835332 G C 1879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.938;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=7.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=-0.749;SOR=1.032 GT:AD:DP:GQ:PL 0/1:73,66:139:99:1908,0,2021 3 56694877 rs9858728 A G 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=1.87;SOR=0.909 GT:AD:DP:GQ:PL 0/1:45,43:88:99:1076,0,1075 3 56695060 rs7619465 T A 348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=1.099;SOR=1.292 GT:AD:DP:GQ:PL 0/1:19,15:34:99:377,0,472 3 56703746 rs13094666 A C 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=1.284;SOR=0.894 GT:AD:DP:GQ:PL 0/1:65,45:110:99:984,0,1481 3 56716922 rs958755 T G 2950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.81;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=5.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.128;SOR=1.019 GT:AD:DP:GQ:PL 0/1:133,119:252:99:2979,0,3196 3 56763316 rs1565376 G A 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.395;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-0.119;SOR=1.022 GT:AD:DP:GQ:PL 0/1:83,61:144:99:1463,0,1932 3 56763328 rs1565377 T C 1775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.398;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.194;SOR=1.029 GT:AD:DP:GQ:PL 0/1:94,72:166:99:1804,0,2116 3 56771251 rs3772219 A C 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.562;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=5.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.102;SOR=1.082 GT:AD:DP:GQ:PL 0/1:89,80:169:99:1910,0,2033 3 56807854 rs374677472 TA T 111.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.416;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.337;QD=1.6;ReadPosRankSum=0.306;SOR=0.498 GT:AD:DP:GQ:PL 0/1:57,13:90:99:149,0,1320 3 56835761 rs3732508 G A 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=1.227;SOR=0.645 GT:AD:DP:GQ:PL 0/1:101,107:208:99:2819,0,2670 3 57132200 rs2291462 A G 2164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.207;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-3.135;SOR=0.655 GT:AD:DP:GQ:PL 0/1:95,85:180:99:2193,0,2238 3 57138419 rs6780995 G A 818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=0.629;SOR=0.573 GT:AD:DP:GQ:PL 0/1:42,35:77:99:847,0,1067 3 57139972 rs1545981 A G 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.129;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=0.53;SOR=0.572 GT:AD:DP:GQ:PL 0/1:60,74:134:99:1874,0,1280 3 57321916 rs883244 T G 3770.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.935;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=3.909;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.66;ReadPosRankSum=1.29;SOR=0.892 GT:AD:DP:GQ:PL 1/1:1,122:123:99:3799,357,0 3 57323170 rs528035 A G 1499.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1528,153,0 3 57326077 rs77118650 G A 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.379;SOR=0.846 GT:AD:DP:GQ:PL 0/1:64,60:124:99:1325,0,1496 3 57328003 . G GA 66.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.67;ReadPosRankSum=0.347;SOR=0.984 GT:AD:DP:GQ:PL 0/1:83,16:103:99:104,0,1738 3 57335876 rs4060726 C T 6155.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6184,620,0 3 57386148 rs12053975 C G 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.412;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.303;SOR=0.786 GT:AD:DP:GQ:PL 0/1:66,58:124:99:1480,0,1604 3 57388114 rs6445873 C T 1136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=10.562;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.345;QD=12.92;ReadPosRankSum=0.896;SOR=0.448 GT:AD:DP:GQ:PL 0/1:41,47:88:99:1165,0,993 3 57414071 rs4681982 G A 452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=1.722;SOR=0.955 GT:AD:DP:GQ:PL 0/1:27,21:48:99:481,0,713 3 57414434 rs4462937 A G 2700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.42;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.216;SOR=0.667 GT:AD:DP:GQ:PL 0/1:107,116:223:99:2729,0,2408 3 57419497 rs6773904 C T 2509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.807;SOR=0.758 GT:AD:DP:GQ:PL 0/1:109,106:215:99:2538,0,2647 3 57430988 rs6768943 G A 2190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.707;SOR=0.791 GT:AD:DP:GQ:PL 0/1:96,92:188:99:2219,0,2424 3 57431740 rs139063171 ATAAATAAATAAT A 2021.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.5;MQ=61.8;MQRankSum=4.038;QD=20.02;ReadPosRankSum=-2.346;SOR=0.803 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,56:101:99:1|0:57431721_A_AAAAT:2059,0,1662 3 57431985 rs2121743 G A 1649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-3.28;SOR=0.742 GT:AD:DP:GQ:PL 0/1:85,69:154:99:1678,0,2027 3 57443817 rs6768661 T C 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.719;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=1.369;SOR=0.928 GT:AD:DP:GQ:PL 0/1:92,83:175:99:2094,0,2194 3 57456371 rs9871422 T C 1108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=-0.134;SOR=0.414 GT:AD:DP:GQ:PL 0/1:37,45:82:99:1137,0,922 3 57469097 rs9863860 C T 1406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=2.814;SOR=0.602 GT:AD:DP:GQ:PL 0/1:60,59:119:99:1435,0,1519 3 57475351 rs6806444 T G 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.927;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=-0.309;SOR=0.892 GT:AD:DP:GQ:PL 0/1:72,53:125:99:1159,0,1654 3 57542173 rs2241988 C T 3061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.548;SOR=0.586 GT:AD:DP:GQ:PL 0/1:174,131:305:99:3090,0,4361 3 57563120 rs80155592 GA G 772.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.894;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=3.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.411;SOR=0.782 GT:AD:DP:GQ:PL 0/1:32,34:66:99:810,0,810 3 57644825 rs55790297 C T 830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.42;ReadPosRankSum=-0.202;SOR=0.62 GT:AD:DP:GQ:PL 0/1:70,42:112:99:859,0,1762 3 57846577 rs2306056 C A 288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.6;ReadPosRankSum=-0.631;SOR=0.765 GT:AD:DP:GQ:PL 0/1:22,16:40:99:317,0,617 3 58081888 rs1522384 T C 3504.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3533,357,0 3 58109162 rs1131356 G A 8017.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8046,811,0 3 58109430 rs11313721 TA T 648.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.817;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.03;ReadPosRankSum=1.154;SOR=0.758 GT:AD:DP:GQ:PL 1/1:3,24:47:53:532,53,0 3 58112440 rs2362903 A G 3761.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3790,375,0 3 58112488 rs2362904 C T 2631.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.429 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2660,261,0 3 58118555 rs12632456 G A 4543.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4572,467,0 3 58145263 rs12634123 G A 823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.144;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=5.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.879;SOR=1.395 GT:AD:DP:GQ:PL 0/1:45,33:78:99:852,0,1223 3 58154327 rs8640 C T 3845.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3874,398,0 3 58191266 rs2070117 C T 2861.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2890,276,0 3 58351660 rs11441667 C CT 452.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.155;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=0.957;QD=7.94;ReadPosRankSum=-1.823;SOR=0.542 GT:AD:DP:GQ:PL 0/1:30,27:65:99:490,0,541 3 58416538 rs4264746 T C 4123.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4152,390,0 3 58516383 rs4387990 G A 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=2.041;SOR=0.522 GT:AD:DP:GQ:PL 0/1:79,75:154:99:1923,0,1992 3 58572577 rs17059434 C G 2073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.63;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.991;SOR=0.752 GT:AD:DP:GQ:PL 0/1:92,86:178:99:2102,0,2462 3 58572625 rs80312641 G A 2142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=4.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.677;SOR=0.442 GT:AD:DP:GQ:PL 0/1:94,90:184:99:2171,0,2393 3 61734539 rs3821880 T C 1406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.175;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.95;SOR=0.659 GT:AD:DP:GQ:PL 0/1:45,61:106:99:1435,0,950 3 62189189 rs2292245 G A 2784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=1.533;SOR=0.803 GT:AD:DP:GQ:PL 0/1:118,114:232:99:2813,0,2994 3 62189437 rs17634074 G C 4096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.686;SOR=0.722 GT:AD:DP:GQ:PL 0/1:165,170:335:99:4125,0,4058 3 62229553 rs1352882 C T 3023.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3052,336,0 3 62319048 rs114729571 A G 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.105;SOR=0.516 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1577,0,1524 3 62556622 rs833663 A G 1730.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1759,177,0 3 63898360 . G GGCAGCAGCA 2111.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.32;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.27;ReadPosRankSum=0.814;SOR=0.873 GT:AD:DP:GQ:PL 0/1:39,48:93:99:2149,0,2006 3 63967900 rs1053338 A G 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.431;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-1.067;SOR=0.693 GT:AD:DP:GQ:PL 0/1:106,106:212:99:2621,0,2463 3 63981676 rs61736567 T C 3162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.889;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=1.152;SOR=0.544 GT:AD:DP:GQ:PL 0/1:128,125:253:99:3191,0,3263 3 63982082 rs3774729 G A 2742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.983;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=1.374;SOR=1.031 GT:AD:DP:GQ:PL 0/1:88,111:199:99:2771,0,2197 3 64133182 rs34460293 G A 2912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.163;SOR=0.632 GT:AD:DP:GQ:PL 0/1:124,126:250:99:2941,0,2970 3 64133350 rs27673 A G 4789.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4818,470,0 3 64672474 rs36115950 A T 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-0.521;SOR=0.598 GT:AD:DP:GQ:PL 0/1:88,105:193:99:2597,0,2274 3 65425560 rs142043619 T TCTG 8769.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.735;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=1.347;QD=33.47;ReadPosRankSum=-0.468;SOR=0.913 GT:AD:DP:GQ:PL 0/1:33,229:262:99:8807,0,548 3 65607637 rs3749455 A G 2174.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=28.24;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2203,230,0 3 66419942 rs1129179 A G 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=5.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=-0.036;SOR=0.62 GT:AD:DP:GQ:PL 0/1:56,37:93:99:774,0,1393 3 66419956 rs13874 C T 710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=5.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.17;ReadPosRankSum=-0.999;SOR=0.66 GT:AD:DP:GQ:PL 0/1:52,35:87:99:739,0,1271 3 66430811 rs2279290 T G 5609.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5638,572,0 3 66432680 rs332371 A G 3723.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3752,392,0 3 66433676 rs900171 A G 8265.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,250:250:99:8294,751,0 3 66444615 rs6793110 G A 3447.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3476,344,0 3 66550756 rs1403625 G C 9365.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.18;SOR=0.921 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,212:212:99:1|1:66550756_G_C:9394,641,0 3 66550762 rs1403626 G C 9351.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.32;SOR=1.004 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,211:211:99:1|1:66550756_G_C:9380,638,0 3 67048762 rs4856833 T C 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.49;SOR=1.926 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4315,384,0 3 67058329 . C CT 140.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.8;ReadPosRankSum=1.291;SOR=0.582 GT:AD:DP:GQ:PL 0/1:25,12:48:99:178,0,521 3 67559216 rs375093108 CT C 144.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.081;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.98;ReadPosRankSum=-1.203;SOR=0.757 GT:AD:DP:GQ:PL 0/1:55,18:77:99:182,0,1281 3 68788363 rs1504301 G T 4045.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4074,423,0 3 69036678 rs4855540 G C 1502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.848;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.89;ReadPosRankSum=-2.129;SOR=0.795 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,42:84:99:0|1:69036678_G_C:1531,0,2084 3 69036683 rs4855541 G A 1353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.81;ReadPosRankSum=-0.538;SOR=0.95 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,34:76:99:0|1:69036678_G_C:1382,0,2099 3 69038088 rs13085120 A G 715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=1.009;SOR=0.944 GT:AD:DP:GQ:PL 0/1:41,35:76:99:744,0,1020 3 69054341 rs6781612 T C 563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.671;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-1.104;SOR=0.559 GT:AD:DP:GQ:PL 0/1:40,26:66:99:592,0,934 3 69058783 rs56761230 C T 881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=2.245;SOR=0.777 GT:AD:DP:GQ:PL 0/1:43,37:80:99:910,0,1101 3 69073223 rs185749329 G A 631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=0.739;SOR=0.883 GT:AD:DP:GQ:PL 0/1:47,30:77:99:660,0,1177 3 69082873 rs937858 G T 829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.984;SOR=0.439 GT:AD:DP:GQ:PL 0/1:46,38:84:99:858,0,1304 3 69084161 rs2271121 C A 1072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.366;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.028;SOR=0.833 GT:AD:DP:GQ:PL 0/1:42,43:85:99:1101,0,948 3 69096614 rs2292199 G A 1934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=1.521;SOR=0.662 GT:AD:DP:GQ:PL 0/1:108,91:199:99:1963,0,2610 3 69104695 rs6549179 T A 1507.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=1.747 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1536,156,0 3 69112658 . CA C 83.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=9.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.09;ReadPosRankSum=-2.011;SOR=1.028 GT:AD:DP:GQ:PL 0/1:31,9:47:99:112,0,705 3 69230061 rs9831516 G A 2643.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=1.45 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2672,255,0 3 69230801 rs9836305 G A 3272.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.74;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3301,351,0 3 69244162 rs9853587 G A 2282.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.15;SOR=1.545 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2311,213,0 3 69245454 rs9310141 T C 2237.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2266,216,0 3 69246152 rs13059488 A G 1980.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2009,204,0 3 69299233 rs4361282 C G 822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.243;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.641;SOR=0.558 GT:AD:DP:GQ:PL 0/1:30,36:66:99:851,0,703 3 71015021 rs7638391 G T 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.789;SOR=0.48 GT:AD:DP:GQ:PL 0/1:41,40:81:99:949,0,1107 3 71739332 . GA G 126.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.44;ReadPosRankSum=-0.86;SOR=0.688 GT:AD:DP:GQ:PL 0/1:69,19:107:99:164,0,1768 3 71823582 rs3796224 C T 1939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.047;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.292;SOR=0.761 GT:AD:DP:GQ:PL 0/1:106,84:190:99:1968,0,2657 3 73111368 rs2231924 T C 5478.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5507,523,0 3 73111809 rs2231926 A G 5315.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5344,554,0 3 73111973 rs2231928 A G 4756.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4785,491,0 3 73111998 rs1060584 C T 4279.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4308,443,0 3 73651621 rs11343439 TA T 779.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.241;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=19.49;ReadPosRankSum=2.159;SOR=0.883 GT:AD:DP:GQ:PL 1/1:3,37:40:36:817,36,0 3 73673578 rs6763344 G C 5905.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.45;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5934,545,0 3 75786080 rs144586950 G T 67.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=22.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 3 75786230 rs149559986 C T 1200.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.86;QD=30.79;SOR=7.378 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1229,117,0 3 75786440 rs145944373 C T 2985.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.44;QD=29.27;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3014,306,0 3 75786753 rs3009020 C T 3038.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.09;QD=29.5;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3067,307,0 3 75786832 rs11122676 C T 5823.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.26;QD=29.41;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5852,593,0 3 78663958 rs5850376 GA G 187.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.853;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.551;QD=1.5;ReadPosRankSum=-0.257;SOR=1.091 GT:AD:DP:GQ:PL 0/1:99,26:141:99:225,0,2289 3 78666765 rs9839790 T C 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.849;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.042;QD=12.85;ReadPosRankSum=1.004;SOR=0.711 GT:AD:DP:GQ:PL 0/1:52,50:102:99:1339,0,1266 3 78676467 rs7636043 A G 3821.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.241 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3850,387,0 3 78700901 rs6795556 G T 1450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-0.922;SOR=0.784 GT:AD:DP:GQ:PL 0/1:64,62:126:99:1479,0,1670 3 81643167 rs2172397 T C 1384.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=1.464 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:81643167_T_C:1413,138,0 3 81810516 rs9820490 C A 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.423;SOR=0.62 GT:AD:DP:GQ:PL 0/1:119,86:205:99:1977,0,3084 3 87295049 rs11540913 T C 3525.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3554,342,0 3 88188420 rs9813894 G A 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.709;SOR=0.531 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1417,0,1956 3 88189341 rs7653652 T C 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.797;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-0.632;SOR=0.833 GT:AD:DP:GQ:PL 0/1:65,75:140:99:1838,0,1387 3 88190809 rs7432838 C T 773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.33;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.56;ReadPosRankSum=1.097;SOR=0.821 GT:AD:DP:GQ:PL 0/1:77,41:118:99:802,0,1773 3 88199185 rs11374933 T TC 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.471;SOR=0.658 GT:AD:DP:GQ:PL 0/1:68,58:128:99:1410,0,1647 3 88199298 rs6551278 T C 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-2.272;SOR=0.692 GT:AD:DP:GQ:PL 0/1:75,60:135:99:1558,0,1944 3 88514766 rs11713321 T A 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=4.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.813;SOR=0.741 GT:AD:DP:GQ:PL 0/1:118,110:228:99:2505,0,2936 3 88514808 rs7640178 C T 3127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=0.831;SOR=0.627 GT:AD:DP:GQ:PL 0/1:100,119:219:99:3156,0,2450 3 88515285 rs76301167 C T 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.546;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-1.216;SOR=0.663 GT:AD:DP:GQ:PL 0/1:62,69:131:99:1763,0,1764 3 88515373 rs71322830 C T 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.247;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=2.067;SOR=0.796 GT:AD:DP:GQ:PL 0/1:96,80:176:99:1917,0,2377 3 88515646 rs35079888 C T 1550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=-0.932;SOR=0.93 GT:AD:DP:GQ:PL 0/1:110,66:176:99:1579,0,2870 3 88515800 rs6551323 G T 2713.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2742,258,0 3 93593119 rs6123 T C 1503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.092;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=55.72;MQRankSum=-0.711;QD=10.23;ReadPosRankSum=1.026;SOR=0.787 GT:AD:DP:GQ:PL 0/1:81,66:147:99:1532,0,2017 3 93779860 rs17855824 C T 1935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=-2.02;SOR=0.844 GT:AD:DP:GQ:PL 0/1:114,85:199:99:1964,0,2948 3 97365038 rs301948 G A 4066.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.29;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4095,446,0 3 97365074 rs301949 A G 4397.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4426,461,0 3 97591153 rs17301717 C T 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-1.387;SOR=0.96 GT:AD:DP:GQ:PL 0/1:55,60:115:99:1467,0,1338 3 97593485 rs2279897 C T 1460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=6.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.835;SOR=0.729 GT:AD:DP:GQ:PL 0/1:86,64:150:99:1489,0,2342 3 97607290 rs13065340 G A 572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.272;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.25;ReadPosRankSum=0.243;SOR=0.826 GT:AD:DP:GQ:PL 0/1:52,27:79:99:601,0,1257 3 97660084 rs11544446 C T 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.383;SOR=1.127 GT:AD:DP:GQ:PL 0/1:52,64:116:99:1519,0,1253 3 97666183 rs2307808 TCTC T 1599.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.18;ReadPosRankSum=-0.884;SOR=1.157 GT:AD:DP:GQ:PL 0/1:28,41:69:99:1637,0,1209 3 97673268 rs832079 A C 2880.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2909,285,0 3 97726747 rs832032 T A 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.715;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=0.624;SOR=0.8 GT:AD:DP:GQ:PL 0/1:40,49:89:99:1235,0,847 3 97806944 rs80220955 T C 742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.905;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.15;SOR=0.836 GT:AD:DP:GQ:PL 0/1:33,25:58:99:771,0,914 3 97851998 rs9845327 A C 3149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.041;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.5;MQ=53.88;MQRankSum=-9.967;QD=12.7;ReadPosRankSum=0.517;SOR=0.517 GT:AD:DP:GQ:PL 0/1:122,126:248:99:3178,0,2901 3 97852083 rs9826076 C T 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.66;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.5;MQ=52;MQRankSum=-3.39;QD=13.6;ReadPosRankSum=1.221;SOR=0.518 GT:AD:DP:GQ:PL 0/1:74,80:154:99:2123,0,2347 3 97868419 rs4241468 G A 2557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.03;MLEAC=1;MLEAF=0.5;MQ=57.07;MQRankSum=-1.591;QD=11.32;ReadPosRankSum=-1.793;SOR=0.792 GT:AD:DP:GQ:PL 0/1:126,100:226:99:2586,0,3237 3 97868616 rs4379004 C T 2933.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=52.29;MQRankSum=-14.505;QD=11.37;ReadPosRankSum=1.554;SOR=0.665 GT:AD:DP:GQ:PL 0/1:131,127:258:99:2962,0,3126 3 97868795 rs4857076 A G 1805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.026;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.57;ReadPosRankSum=0.367;SOR=0.711 GT:AD:DP:GQ:PL 0/1:45,64:109:99:1834,0,1110 3 97868970 rs12639519 T A 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.839;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=0.953;QD=12.15;ReadPosRankSum=0.712;SOR=0.495 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1510,0,1719 3 97887865 rs4133320 G A 3082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.258;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=5.591;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.745;SOR=0.941 GT:AD:DP:GQ:PL 0/1:147,128:275:99:3111,0,3513 3 97887985 rs4133321 T A 2625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=6.006;MLEAC=1;MLEAF=0.5;MQ=59.47;MQRankSum=-0.313;QD=13.26;ReadPosRankSum=1.138;SOR=0.398 GT:AD:DP:GQ:PL 0/1:92,106:198:99:2654,0,2324 3 97888042 rs4133322 A T 2013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.5;MQ=53.98;MQRankSum=1.886;QD=13.61;ReadPosRankSum=0.804;SOR=0.494 GT:AD:DP:GQ:PL 0/1:67,81:148:99:2042,0,1621 3 97888197 rs7623031 C T 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=-1.403;QD=13.76;ReadPosRankSum=-0.644;SOR=0.611 GT:AD:DP:GQ:PL 0/1:54,59:113:99:1583,0,1498 3 97888337 rs13082608 C T 2511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.872;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=7.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.9;ReadPosRankSum=0.75;SOR=0.349 GT:AD:DP:GQ:PL 0/1:66,92:158:99:2540,0,1513 3 97983257 rs2132894 C G 2643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=2.41;SOR=0.737 GT:AD:DP:GQ:PL 0/1:98,102:200:99:2672,0,2532 3 97983391 rs2173236 C T 1349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-1.028;QD=11.94;ReadPosRankSum=0.028;SOR=0.619 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1378,0,1593 3 97983487 rs74203917 TTGTAACCAC T 1834.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.348;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-1.192;QD=14.92;ReadPosRankSum=-0.313;SOR=0.569 GT:AD:DP:GQ:PL 0/1:73,50:123:99:1872,0,4439 3 97983561 rs9289564 G C 1105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.607;SOR=0.65 GT:AD:DP:GQ:PL 0/1:70,47:117:99:1134,0,1859 3 97983711 rs9853887 T C 1256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=5.938;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.019;QD=11.22;ReadPosRankSum=-0.779;SOR=0.469 GT:AD:DP:GQ:PL 0/1:58,54:112:99:1285,0,1552 3 97983942 rs9853906 A G 1390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.44;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=0.643;SOR=0.696 GT:AD:DP:GQ:PL 0/1:95,60:155:99:1419,0,2432 3 97983981 rs9871143 G A 1290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.165;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.9;ReadPosRankSum=0.078;SOR=0.473 GT:AD:DP:GQ:PL 0/1:88,57:145:99:1319,0,2602 3 98073313 rs9822460 A G 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.474;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=-0.117;SOR=0.765 GT:AD:DP:GQ:PL 0/1:43,55:98:99:1429,0,1050 3 98073591 rs11288615 TA T 358.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.663;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=4.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=1.113;SOR=1.251 GT:AD:DP:GQ:PL 0/1:23,19:42:99:396,0,556 3 98109640 rs13068323 G A 1561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.306;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-1.065;SOR=0.555 GT:AD:DP:GQ:PL 0/1:65,66:131:99:1590,0,1705 3 98110406 rs144759043 G GA 347.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.574;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.292;QD=7.56;ReadPosRankSum=1.194;SOR=0.46 GT:AD:DP:GQ:PL 0/1:28,18:46:99:385,0,605 3 98217178 rs55639376 T A 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.058;QD=11.16;ReadPosRankSum=-0.725;SOR=0.754 GT:AD:DP:GQ:PL 0/1:68,59:127:99:1445,0,1813 3 98250862 rs3749260 C A 1135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=1.544;SOR=0.627 GT:AD:DP:GQ:PL 0/1:43,44:87:99:1164,0,1220 3 98503792 rs112115496 A G 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.855;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-1.426;SOR=0.608 GT:AD:DP:GQ:PL 0/1:31,25:56:99:644,0,813 3 98512540 rs28489284 G A 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.505;SOR=0.473 GT:AD:DP:GQ:PL 0/1:38,37:75:99:838,0,990 3 98541116 rs828616 G A 2058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.705;SOR=0.809 GT:AD:DP:GQ:PL 0/1:97,92:189:99:2087,0,2213 3 98600385 rs9838238 T C 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.106;SOR=0.682 GT:AD:DP:GQ:PL 0/1:58,47:105:99:1228,0,1677 3 99643176 rs793440 C T 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=0.661;SOR=0.796 GT:AD:DP:GQ:PL 0/1:72,56:128:99:1277,0,1854 3 100354524 rs1144122 A G 3813.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3842,353,0 3 100558416 rs9841585 T C 1822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.446;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.172;SOR=0.736 GT:AD:DP:GQ:PL 0/1:81,78:159:99:1851,0,1822 3 100570787 . T TAAAA 512.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.51;ReadPosRankSum=-0.767;SOR=0.685 GT:AD:DP:GQ:PL 0/1:13,12:43:99:550,0,788 3 100594326 rs3839090 CGGCATA C 3942.73 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=44.3;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3980,268,0 3 100617668 rs34999788 G T 5740.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5769,591,0 3 100949842 rs348867 G A 2979.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3008,311,0 3 100963154 rs571391 G A 3761.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3790,369,0 3 100994497 rs533852 C T 596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=1.006;SOR=0.985 GT:AD:DP:GQ:PL 0/1:47,28:75:99:625,0,1228 3 101046671 rs9849770 C A 808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=1.218;SOR=0.368 GT:AD:DP:GQ:PL 0/1:37,33:70:99:837,0,1035 3 101066717 rs2433031 T A 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.251;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.236;SOR=0.693 GT:AD:DP:GQ:PL 0/1:37,37:74:99:935,0,876 3 101080694 rs7616677 T C 762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.213;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.95;ReadPosRankSum=1.544;SOR=0.644 GT:AD:DP:GQ:PL 0/1:17,28:45:99:791,0,397 3 101085413 rs939443 G A 1113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.295;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.439;SOR=0.846 GT:AD:DP:GQ:PL 0/1:48,43:91:99:1142,0,1220 3 101231921 rs9682313 T C 1480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.31;SOR=0.608 GT:AD:DP:GQ:PL 0/1:64,61:125:99:1509,0,1575 3 101446207 rs3070526 AAT A 1686.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.263;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.763;QD=25.56;ReadPosRankSum=-2.268;SOR=0.818 GT:AD:DP:GQ:PL 0/1:23,43:66:99:1724,0,840 3 101484335 rs2625282 G A 4925.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4954,506,0 3 101576029 rs3217713 T TACTTTTAGAAAGCTTTAATAACC 3384.73 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=49.78;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,68:68:99:3422,229,0 3 101576175 rs14134 T C 4556.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4585,429,0 3 105238890 rs11291806 CT C 2457.73 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.23;QD=36.68;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,67:69:99:2495,212,0 3 105238901 rs2291376 T C 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.5;MQ=61.14;MQRankSum=1.029;QD=11.58;ReadPosRankSum=-1.669;SOR=1.024 GT:AD:DP:GQ:PL 0/1:31,43:74:99:885,0,679 3 105260596 rs599278 T C 4783.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4812,464,0 3 105264176 rs34926152 G T 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.767;SOR=0.69 GT:AD:DP:GQ:PL 0/1:33,39:72:99:881,0,776 3 105266274 rs16851279 T C 1787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.212;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.465;SOR=0.723 GT:AD:DP:GQ:PL 0/1:87,73:160:99:1816,0,2122 3 105389153 rs11713094 A G 722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=4.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=0.048;SOR=0.91 GT:AD:DP:GQ:PL 0/1:44,33:77:99:751,0,1065 3 105422844 rs2305037 C T 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-1.679;SOR=0.549 GT:AD:DP:GQ:PL 0/1:69,60:129:99:1433,0,1822 3 105438957 rs2305036 T G 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.161;SOR=0.538 GT:AD:DP:GQ:PL 0/1:73,54:127:99:1327,0,1921 3 105439026 rs2305035 G A 1041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.38;SOR=0.835 GT:AD:DP:GQ:PL 0/1:67,46:113:99:1070,0,1650 3 107097346 rs3811061 C A 1532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=0.892;SOR=0.799 GT:AD:DP:GQ:PL 0/1:47,64:111:99:1561,0,1168 3 107884269 rs62264150 A G 2207.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2236,228,0 3 107937408 rs1135897 C T 1450.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.37;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1479,159,0 3 108072298 rs6779254 T C 3138.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=1.516 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3167,296,0 3 108096098 rs1463426 C G 1728.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1757,167,0 3 108102586 rs34041576 T TA 796.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=1.232;SOR=0.426 GT:AD:DP:GQ:PL 0/1:22,41:71:99:834,0,328 3 108107925 rs7616341 C A 3518.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3547,354,0 3 108117694 rs13087507 G A 4125.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.418 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4154,423,0 3 108147728 rs3900940 T C 1163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.938;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-1.042;SOR=0.914 GT:AD:DP:GQ:PL 0/1:67,51:118:99:1192,0,1620 3 108158574 rs3996040 C T 3708.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.316 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3737,360,0 3 108179219 rs11303627 CA C 560.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=7.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=1.464;SOR=1.428 GT:AD:DP:GQ:PL 0/1:31,31:74:99:598,0,639 3 108188993 rs9868484 G A 3270.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3299,332,0 3 108229437 rs150536264 G GA 862.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=-0.773;SOR=0.837 GT:AD:DP:GQ:PL 0/1:51,45:101:99:900,0,981 3 108272588 rs72470117 T TA 514.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.867;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-1.864;SOR=0.34 GT:AD:DP:GQ:PL 0/1:20,24:44:99:552,0,384 3 108303989 rs34788499 C A 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=4.09;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=-0.956;QD=11.18;ReadPosRankSum=-0.359;SOR=0.355 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1034,0,1183 3 108355575 rs10711080 CT C 1217.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.938;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.602;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=18.73;ReadPosRankSum=0.235;SOR=0.87 GT:AD:DP:GQ:PL 1/1:7,58:70:20:1255,20,0 3 108373022 rs2969901 G A 1579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.289;SOR=0.667 GT:AD:DP:GQ:PL 0/1:48,66:114:99:1608,0,1203 3 108403086 rs9856097 T C 3249.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3278,320,0 3 108475974 rs11708527 G A 2045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=0.08;SOR=0.633 GT:AD:DP:GQ:PL 0/1:93,92:185:99:2074,0,2148 3 108541761 rs9879812 T C 580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.162;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.7;SOR=0.54 GT:AD:DP:GQ:PL 0/1:26,28:54:99:609,0,670 3 108557820 rs7651205 T C 769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.108;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=1.273;SOR=0.764 GT:AD:DP:GQ:PL 0/1:45,34:79:99:798,0,1027 3 108639270 rs6791441 C T 1775.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.238 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,57:57:99:1|1:108639270_C_T:1804,171,0 3 108639384 rs6804162 T C 1753.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.773 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1782,177,0 3 108639423 rs2715687 C T 1317.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.714 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1346,135,0 3 108705715 rs11433147 A AT 1995.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.34;ReadPosRankSum=-1.289;SOR=0.854 GT:AD:DP:GQ:PL 1/1:5,77:82:99:2033,122,0 3 108754238 rs4855576 A T 2744.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2773,288,0 3 108754320 rs11438791 T TAA 1380.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=35.4;ReadPosRankSum=1.508;SOR=0.997 GT:AD:DP:GQ:PL 1/1:1,38:46:96:1409,96,0 3 108776343 rs1031252 C T 2508.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2537,246,0 3 109027157 rs7611135 C T 3791.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.812 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3820,366,0 3 109052732 rs3762648 T C 4408.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4437,451,0 3 111356083 rs1533270 G C 1653.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,55:55:99:1|1:111356078_T_C:1682,165,0 3 111637904 rs2399399 G A 3378.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=1.29 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3407,348,0 3 111658486 rs712510 T G 4376.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.398 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4405,413,0 3 111659377 rs698358 T C 2059.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2088,216,0 3 111688578 rs774854 C T 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-0.875;SOR=0.651 GT:AD:DP:GQ:PL 0/1:69,70:139:99:1845,0,1854 3 111730591 rs3749311 G T 1201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=-1.452;SOR=0.843 GT:AD:DP:GQ:PL 0/1:83,57:140:99:1230,0,2069 3 111763085 rs4682350 C T 1548.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=1.358 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,52:52:99:1|1:111763076_C_A:1577,156,0 3 111768836 rs76384225 A G 1756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-1.581;SOR=0.569 GT:AD:DP:GQ:PL 0/1:52,73:125:99:1785,0,1240 3 111799845 rs340151 A T 5453.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5482,563,0 3 111828423 rs340167 G A 2205.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2234,222,0 3 111873902 rs201930245 T TA 1144.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.61;ReadPosRankSum=-0.954;SOR=0.412 GT:AD:DP:GQ:PL 0/1:12,53:74:45:1182,0,45 3 111887792 rs76007436 C A 800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.681;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.93;ReadPosRankSum=0.331;SOR=0.709 GT:AD:DP:GQ:PL 0/1:65,36:101:99:829,0,1631 3 111918215 rs28516377 C T 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.625;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.539;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,43:105:99:0|1:111918215_C_T:1053,0,1515 3 111918216 rs13098660 A G 3807.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.26;SOR=0.791 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,105:105:99:1|1:111918215_C_T:3836,318,0 3 111921116 rs9288938 C A 1695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.147;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=0.856;SOR=0.735 GT:AD:DP:GQ:PL 0/1:65,70:135:99:1724,0,1519 3 111921225 rs6781844 G T 3031.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3060,312,0 3 111923047 rs4422273 G A 1088.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1117,105,0 3 111923123 rs4434123 G A 1612.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1641,150,0 3 111958679 rs13065023 T C 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.471;SOR=0.598 GT:AD:DP:GQ:PL 0/1:50,52:102:99:1220,0,1284 3 111958862 rs13089635 C A 1410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-2.45;SOR=0.635 GT:AD:DP:GQ:PL 0/1:70,62:132:99:1439,0,1833 3 111962851 rs6768523 T C 868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.282;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.24;ReadPosRankSum=0.482;SOR=0.752 GT:AD:DP:GQ:PL 0/1:24,33:57:99:897,0,537 3 111981849 rs9860819 C T 4030.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4059,399,0 3 111981878 rs9809384 T C 3679.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3708,365,0 3 111981924 rs9809404 T C 2714.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.11;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2743,246,0 3 111983197 rs6788397 C T 1723.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.733 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1752,174,0 3 111985107 rs9872691 T C 1402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.562;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.92;ReadPosRankSum=0.485;SOR=1.038 GT:AD:DP:GQ:PL 0/1:36,58:94:99:1431,0,692 3 111996554 rs9828502 T C 1200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.782;SOR=0.742 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1229,0,1404 3 112063850 rs2272022 C A 3773.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3802,369,0 3 112185025 rs9288952 G A 4943.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4972,491,0 3 112190137 rs2931761 G T 5764.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.85;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5793,619,0 3 112253058 rs35560667 C CA 2842.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.196;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.61;ReadPosRankSum=0.489;SOR=0.748 GT:AD:DP:GQ:PL 1/1:4,107:115:99:2880,244,0 3 112253193 rs11381118 C CA 1192.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=-1.681;SOR=1.209 GT:AD:DP:GQ:PL 0/1:19,58:87:99:1230,0,229 3 112289372 rs9869579 G A 2842.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2871,287,0 3 112545910 rs58161637 GT G 2953.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.613;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.27;ReadPosRankSum=1.143;SOR=0.606 GT:AD:DP:GQ:PL 0/1:84,87:171:99:2991,0,2870 3 112546473 rs1997281 G A 1774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.5;MQ=58.05;MQRankSum=0.029;QD=10.2;ReadPosRankSum=0.114;SOR=0.558 GT:AD:DP:GQ:PL 0/1:95,79:174:99:1803,0,2433 3 112642568 rs9865242 C G 1184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.808;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.562;SOR=0.665 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1213,0,1246 3 112647832 rs9826308 A C 2243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.253;SOR=0.739 GT:AD:DP:GQ:PL 0/1:93,93:186:99:2272,0,2139 3 112647988 rs9868053 C T 1856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.202;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-1.519;QD=11.46;ReadPosRankSum=-1.578;SOR=0.666 GT:AD:DP:GQ:PL 0/1:87,75:162:99:1885,0,2147 3 112648125 rs6438117 G T 4503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=6.995;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-4.018;QD=18.38;ReadPosRankSum=-0.722;SOR=1.045 GT:AD:DP:GQ:PGT:PID:PL 0/1:128,117:245:99:0|1:112648125_G_T:4532,0,6765 3 112648127 rs4596117 T G 4503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.055;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=6.887;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-4.293;QD=18.16;ReadPosRankSum=-0.85;SOR=0.983 GT:AD:DP:GQ:PGT:PID:PL 0/1:129,119:248:99:0|1:112648125_G_T:4532,0,6765 3 112648222 rs2171509 T C 3181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=6.034;MLEAC=1;MLEAF=0.5;MQ=58.22;MQRankSum=-1.298;QD=12.93;ReadPosRankSum=-0.028;SOR=0.779 GT:AD:DP:GQ:PL 0/1:112,134:246:99:3210,0,2715 3 112709828 rs2272393 C G 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.827;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.82;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-1.421;SOR=0.865 GT:AD:DP:GQ:PL 0/1:60,43:103:99:1133,0,1571 3 112727184 rs2306857 A T 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.907;SOR=0.626 GT:AD:DP:GQ:PL 0/1:72,76:148:99:1714,0,1632 3 113010466 rs2291905 T C 6326.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6355,654,0 3 113015553 rs808950 A C 3660.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3689,356,0 3 113015660 rs2270781 G A 1916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.55;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-2.447;SOR=0.854 GT:AD:DP:GQ:PL 0/1:101,85:186:99:1945,0,2365 3 113022870 rs4682484 T C 6131.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6160,644,0 3 113128051 rs13059888 G T 2024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.195;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-2.861;SOR=0.762 GT:AD:DP:GQ:PL 0/1:73,92:165:99:2053,0,1538 3 113145006 rs73239107 C T 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.578;SOR=0.793 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1897,0,2177 3 113146130 rs59722850 T C 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.954;SOR=0.632 GT:AD:DP:GQ:PL 0/1:36,52:88:99:1153,0,771 3 113286405 rs2292511 C T 533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=5.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.31;ReadPosRankSum=-0.219;SOR=1.376 GT:AD:DP:GQ:PL 0/1:48,25:73:99:562,0,1325 3 113320477 rs33990195 C T 768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=1.128;SOR=0.497 GT:AD:DP:GQ:PL 0/1:42,35:77:99:797,0,1055 3 113323787 rs3732797 G A 2028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=-0.332;SOR=0.838 GT:AD:DP:GQ:PL 0/1:67,84:151:99:2057,0,1584 3 113373930 rs930818 A G 3599.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3628,348,0 3 113375077 rs75025102 T C 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.528;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-1.245;SOR=0.82 GT:AD:DP:GQ:PL 0/1:73,81:154:99:1976,0,1961 3 113376110 rs10606566 TTGC T 3685.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.406;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=6.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.34;ReadPosRankSum=1.251;SOR=0.688 GT:AD:DP:GQ:PL 0/1:101,100:209:99:3723,0,3623 3 113557787 rs372553869 AGCC A 5523.73 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=44.55;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,124:124:99:5561,374,0 3 113594377 rs13079383 A G 342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.027;SOR=0.495 GT:AD:DP:GQ:PL 0/1:16,14:30:99:371,0,375 3 113619872 rs2632244 C T 744.77 PASS AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,25:25:75:773,75,0 3 113673125 rs11921691 A G 2498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.432;SOR=0.656 GT:AD:DP:GQ:PL 0/1:127,103:230:99:2527,0,3293 3 113679589 rs12629415 C A 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.37;SOR=1.009 GT:AD:DP:GQ:PL 0/1:54,51:105:99:1263,0,1427 3 113720517 rs6784095 T A 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.62;SOR=0.585 GT:AD:DP:GQ:PL 0/1:70,70:140:99:1495,0,1509 3 113785149 rs3830297 ATATGT A 679.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=0.636;SOR=0.936 GT:AD:DP:GQ:PL 0/1:27,19:46:99:717,0,1948 3 113798789 rs138101918 C T 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.439;SOR=0.553 GT:AD:DP:GQ:PL 0/1:62,53:115:99:1235,0,1505 3 113858350 rs2251177 C T 4845.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.01;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4874,514,0 3 113890815 rs6280 C T 1963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.752;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.43;ReadPosRankSum=-0.287;SOR=0.873 GT:AD:DP:GQ:PL 0/1:146,87:233:99:1992,0,3699 3 113955753 rs146464395 C T 2083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.901;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=-0.857;SOR=0.611 GT:AD:DP:GQ:PL 0/1:121,87:208:99:2112,0,2943 3 118621664 rs36052974 C A 1588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.147;SOR=0.993 GT:AD:DP:GQ:PL 0/1:75,70:145:99:1617,0,1835 3 118645118 rs9848979 A G 927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.561;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=-1.946;SOR=0.927 GT:AD:DP:GQ:PL 0/1:61,43:104:99:956,0,1447 3 118649060 rs2903250 G T 6001.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6030,630,0 3 118865801 rs4077931 C T 2934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=4.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=1.821;SOR=0.925 GT:AD:DP:GQ:PL 0/1:98,118:216:99:2963,0,2417 3 118865970 rs4077930 G A 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-1.088;SOR=0.637 GT:AD:DP:GQ:PL 0/1:106,86:192:99:2035,0,2748 3 118867047 rs9289122 C G 1244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.329;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.37;ReadPosRankSum=-0.41;SOR=0.723 GT:AD:DP:GQ:PL 0/1:36,45:81:99:1273,0,819 3 118909159 rs9840317 A G 2869.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2898,293,0 3 118909962 rs3796356 T C 5637.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5666,574,0 3 118913261 rs36002465 T TC 3422.73 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.6;QD=32.91;SOR=1.436 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3460,313,0 3 118931389 rs6784208 C T 4220.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4249,420,0 3 118948716 rs4422294 G A 4940.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4969,477,0 3 119118104 rs4688001 A G 2681.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2710,267,0 3 119128628 rs1463139 A G 5118.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.38;SOR=1.131 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:119128628_A_G:5147,355,0 3 119128634 rs1463138 T C 4849.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.91;SOR=1.077 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,108:108:99:1|1:119128628_A_G:4878,328,0 3 119133183 rs3732413 G A 8253.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=3.69;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.9;ReadPosRankSum=1.304;SOR=0.725 GT:AD:DP:GQ:PL 1/1:1,275:276:99:8282,789,0 3 119171280 rs1919586 C G 2436.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.01;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2465,260,0 3 119196166 rs3732420 T C 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=1.39;SOR=0.606 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1395,0,1540 3 119211294 rs1997341 A G 414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=0.241;SOR=0.52 GT:AD:DP:GQ:PL 0/1:31,20:51:99:443,0,866 3 119305169 rs20569 G A 2678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.293;SOR=0.521 GT:AD:DP:GQ:PL 0/1:123,119:242:99:2707,0,2932 3 119327604 rs5852212 GC G 479.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.687;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.16;ReadPosRankSum=0.855;SOR=0.728 GT:AD:DP:GQ:PL 0/1:45,22:67:99:517,0,1263 3 119327653 rs1723969 T C 962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=-2.12;SOR=0.715 GT:AD:DP:GQ:PL 0/1:68,46:114:99:991,0,1575 3 119331874 rs2272270 C T 575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.508;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.85;ReadPosRankSum=0.422;SOR=0.844 GT:AD:DP:GQ:PL 0/1:55,29:84:99:604,0,1340 3 119331892 rs2272269 C G 598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.99;ReadPosRankSum=1.114;SOR=0.719 GT:AD:DP:GQ:PL 0/1:67,33:100:99:627,0,1660 3 119367390 rs2688643 T C 4457.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4486,444,0 3 119378872 rs1880040 G A 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=2.308;SOR=0.91 GT:AD:DP:GQ:PL 0/1:58,65:123:99:1762,0,1527 3 119378977 rs2873788 G A 1701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=4.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.179;SOR=0.585 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1730,0,2050 3 119379186 rs4688023 C T 2401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-0.829;SOR=0.768 GT:AD:DP:GQ:PL 0/1:84,107:191:99:2430,0,2047 3 119426307 rs9848716 T C 3305.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3334,327,0 3 119434527 rs6438544 G C 2682.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2711,270,0 3 119533910 rs4058490 T C 7206.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.4;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7235,787,0 3 119886548 rs9858566 G C 2940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.377;SOR=0.7 GT:AD:DP:GQ:PL 0/1:138,125:263:99:2969,0,3504 3 119886776 rs902790 T A 1635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.152;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=6.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=2.09;SOR=1.221 GT:AD:DP:GQ:PL 0/1:84,61:145:99:1664,0,2059 3 119905641 rs2319542 G A 1268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.301;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=1.237;SOR=0.765 GT:AD:DP:GQ:PL 0/1:67,54:121:99:1297,0,1950 3 120067797 rs4676696 G A 2704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-1.181;SOR=0.84 GT:AD:DP:GQ:PL 0/1:134,111:245:99:2733,0,3528 3 120068022 rs6770482 C G 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.465;SOR=0.832 GT:AD:DP:GQ:PL 0/1:97,69:166:99:1874,0,2792 3 120134883 rs2272515 T C 964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.54;ReadPosRankSum=-2.152;SOR=1.038 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,32:55:99:0|1:120134883_T_C:993,0,844 3 120389316 rs2255543 T A 1609.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1638,168,0 3 120428621 rs11720353 T C 1465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.078;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=3.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.04;ReadPosRankSum=0.234;SOR=1.162 GT:AD:DP:GQ:PL 0/1:32,54:86:99:1494,0,664 3 120840571 rs75367092 T C 797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.075;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.79;SOR=0.643 GT:AD:DP:GQ:PL 0/1:33,32:65:99:826,0,722 3 121100283 rs17740066 G A 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=4.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.503;SOR=0.982 GT:AD:DP:GQ:PL 0/1:107,86:193:99:1863,0,2522 3 121154974 rs1381057 T C 752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.689;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=-0.936;SOR=0.675 GT:AD:DP:GQ:PL 0/1:52,32:84:99:781,0,1267 3 121155122 rs41540016 C T 926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.526;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.019;SOR=1.091 GT:AD:DP:GQ:PL 0/1:57,38:95:99:955,0,1513 3 121202433 rs201304336 TA T 786.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.055;QD=9.37;ReadPosRankSum=-0.096;SOR=0.988 GT:AD:DP:GQ:PL 0/1:37,47:106:99:824,0,670 3 121208176 rs3218651 T C 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-1.606;SOR=0.739 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1263,0,1431 3 121208833 rs3218649 G C 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.134;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=-1.337;SOR=1.124 GT:AD:DP:GQ:PL 0/1:43,43:86:99:1220,0,1160 3 121208894 rs3218636 T C 569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.418;SOR=0.315 GT:AD:DP:GQ:PL 0/1:33,24:57:99:598,0,987 3 121238749 rs702018 G A 2328.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2357,249,0 3 121263720 rs702017 C A 2782.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.305 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2811,279,0 3 121304933 rs9813391 G A 2389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=0.077;SOR=0.832 GT:AD:DP:GQ:PL 0/1:137,111:248:99:2418,0,3284 3 121340536 rs4676684 T C 3202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.429;SOR=0.69 GT:AD:DP:GQ:PL 0/1:116,128:244:99:3231,0,2714 3 121350966 rs9869984 C G 4759.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4788,475,0 3 121353254 rs2070179 T C 1595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.509;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-0.215;SOR=0.51 GT:AD:DP:GQ:PL 0/1:56,63:119:99:1624,0,1368 3 121361787 rs2070178 G A 413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.24;ReadPosRankSum=0.195;SOR=0.593 GT:AD:DP:GQ:PL 0/1:55,24:79:99:442,0,1342 3 121412892 rs11915822 A G 1333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.767;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.419;SOR=0.683 GT:AD:DP:GQ:PL 0/1:61,52:113:99:1362,0,1497 3 121414217 rs35674179 C A 1479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.88;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-0.211;SOR=0.501 GT:AD:DP:GQ:PL 0/1:55,55:110:99:1508,0,1370 3 121415290 . ACT A 2543.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.009;ClippingRankSum=0;DP=129;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.954;QD=20.19;ReadPosRankSum=0.208;SOR=0.966 GT:AD:DP:GQ:PL 0/1:59,67:126:99:2581,0,2235 3 121435621 rs9832267 T C 1276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=1.254;SOR=0.545 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,35:89:99:0|1:121435621_T_C:1305,0,3001 3 121435624 rs9812411 C T 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=1.694;SOR=0.584 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,35:92:99:0|1:121435621_T_C:1275,0,3004 3 121489439 rs148949254 TA T 1010.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.579;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=1.3;SOR=0.754 GT:AD:DP:GQ:PL 0/1:43,36:79:99:1048,0,1256 3 121500699 rs17849995 C T 1502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-1.738;SOR=0.73 GT:AD:DP:GQ:PL 0/1:83,76:159:99:1531,0,1857 3 121526204 rs4543051 G A 920.77 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,32:32:96:949,96,0 3 121712051 rs2877561 A C 2013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.304;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=5.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=0.443;SOR=0.393 GT:AD:DP:GQ:PL 0/1:75,79:154:99:2042,0,1893 3 121712805 rs3915061 G C 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-1.445;SOR=0.577 GT:AD:DP:GQ:PL 0/1:94,75:169:99:1727,0,2526 3 121810427 rs63114861 CT C 1069.73 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.96;QD=24.88;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1107,129,0 3 121825197 rs2681417 G A 3078.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3107,315,0 3 121838319 rs1129055 G A 712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=1.27;SOR=0.693 GT:AD:DP:GQ:PL 0/1:26,33:59:99:741,0,564 3 121976253 rs9869985 G A 2670.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2699,270,0 3 122003045 rs2036400 G C 6354.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6383,609,0 3 122003757 rs1801725 G T 3014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.45;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=2.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.541;SOR=0.844 GT:AD:DP:GQ:PL 0/1:106,118:224:99:3043,0,2610 3 122003832 rs1801726 G C 6090.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6119,575,0 3 122056432 rs17589 C T 1328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=5.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.45;ReadPosRankSum=-0.346;SOR=0.3 GT:AD:DP:GQ:PL 0/1:31,55:86:99:1357,0,704 3 122060404 rs34173813 C T 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-2.585;SOR=0.954 GT:AD:DP:GQ:PL 0/1:54,41:95:99:925,0,1352 3 122186188 rs4678193 C T 2151.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2180,230,0 3 122259606 rs9851180 T C 4950.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=31.33;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4979,473,0 3 122259640 rs28365795 T C 4723.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;MQRankSum=0.157;QD=28.8;ReadPosRankSum=1.812;SOR=0.363 GT:AD:DP:GQ:PL 1/1:1,163:164:99:4752,457,0 3 122274988 . TAAAAAAAAAAA T 433.52 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=33.35;ReadPosRankSum=0.319;SOR=1.17 GT:AD:DP:GQ:PL 0/1:3,10:17:16:463,0,16 3 122277268 rs34006803 G A 1353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.925;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=11.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.054;SOR=0.353 GT:AD:DP:GQ:PL 0/1:64,60:124:99:1382,0,1772 3 122288210 rs2332285 G A 5768.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5797,543,0 3 122345870 rs17208928 C T 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=0.158;SOR=0.735 GT:AD:DP:GQ:PL 0/1:54,41:95:99:941,0,1234 3 122354037 rs1106346 A G 1841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.377;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.564;SOR=0.919 GT:AD:DP:GQ:PL 0/1:74,76:150:99:1870,0,1649 3 122354716 rs61754895 C T 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-2.163;SOR=0.69 GT:AD:DP:GQ:PL 0/1:97,74:171:99:1679,0,2459 3 122418750 rs11719086 G A 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=8.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.62;ReadPosRankSum=-1.116;SOR=0.669 GT:AD:DP:GQ:PL 0/1:56,73:129:99:1914,0,1400 3 122437321 rs7645033 T C 4086.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4115,396,0 3 122474121 rs61756481 G C 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.08;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=0.778;SOR=0.704 GT:AD:DP:GQ:PL 0/1:60,34:94:99:916,0,1640 3 122512542 rs76805079 G C 1097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.207;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.519;SOR=1.044 GT:AD:DP:GQ:PL 0/1:45,40:85:99:1126,0,1066 3 122630323 rs2303982 T G 6685.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.41;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,154:154:99:1|1:122630323_T_G:6714,469,0 3 122630346 rs2303983 T C 6651.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.64;SOR=0.8 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,156:156:99:1|1:122630323_T_G:6680,469,0 3 122631896 rs2276782 A T 4574.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.89;SOR=1.213 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4603,405,0 3 122642590 rs2276778 G A 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.533;SOR=0.671 GT:AD:DP:GQ:PL 0/1:72,84:156:99:1949,0,1763 3 122646734 rs2276775 C T 2537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-2.737;SOR=0.717 GT:AD:DP:GQ:PL 0/1:127,112:239:99:2566,0,2977 3 122646828 rs2276774 A G 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.943;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.786;SOR=0.762 GT:AD:DP:GQ:PL 0/1:87,70:157:99:1738,0,2166 3 122843110 rs861375 G T 686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.38;ReadPosRankSum=-1.3;SOR=0.686 GT:AD:DP:GQ:PL 0/1:51,31:82:99:715,0,1468 3 122864436 rs8739 G A 2745.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=1.099 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2774,291,0 3 122942402 rs1546604 G A 783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-3.225;SOR=0.551 GT:AD:DP:GQ:PL 0/1:31,36:67:99:812,0,818 3 123018963 rs4482616 A G 2168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=1.385;SOR=0.672 GT:AD:DP:GQ:PL 0/1:105,97:202:99:2197,0,2411 3 123047666 rs9855969 A G 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.564;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-0.721;SOR=0.758 GT:AD:DP:GQ:PL 0/1:63,51:114:99:1330,0,1703 3 123167249 rs4678027 G A 8883.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,299:299:99:8912,895,0 3 123411589 rs40305 G A 3274.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.99;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3303,351,0 3 123418913 rs865358 G A 6422.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=30.73;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6451,626,0 3 123440967 rs820355 G A 6168.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.018 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6197,609,0 3 123451773 rs9833275 G C 5186.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5215,525,0 3 123452838 rs4678047 G A 3274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.071;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=4.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=2.827;SOR=0.64 GT:AD:DP:GQ:PL 0/1:122,123:245:99:3303,0,3115 3 123457893 rs9840993 G A 5213.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=1.415 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5242,524,0 3 123633612 rs11551801 G A 966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=3.352;SOR=0.654 GT:AD:DP:GQ:PL 0/1:59,40:99:99:995,0,1547 3 123634046 rs2700373 G A 1677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=0.76;SOR=0.584 GT:AD:DP:GQ:PL 0/1:91,72:163:99:1706,0,2395 3 123665902 rs17310144 T G 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.002;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-1.128;SOR=1.016 GT:AD:DP:GQ:PL 0/1:89,73:162:99:1733,0,2291 3 123946895 rs2293641 G A 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=1.314;SOR=0.661 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1189,0,1293 3 123988039 rs2272486 T C 2307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.97;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=1.029;SOR=0.715 GT:AD:DP:GQ:PL 0/1:121,98:219:99:2336,0,2732 3 124044949 rs2289778 C T 4809.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4838,495,0 3 124066121 rs10664523 C CTGTG,CTGTGTG 1392.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.897;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.97;MQRankSum=0;QD=34.82;ReadPosRankSum=0.993;SOR=0.804 GT:AD:DP:GQ:PL 1/2:4,12,24:40:99:1430,472,511,167,0,237 3 124114068 rs9841322 G A 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=5.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-1.636;SOR=1.075 GT:AD:DP:GQ:PL 0/1:97,78:175:99:1832,0,2502 3 124196094 rs2289843 A T 813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.901;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1;QD=11.97;ReadPosRankSum=0.128;SOR=0.678 GT:AD:DP:GQ:PL 0/1:33,35:68:99:842,0,734 3 124351316 rs1708303 G A 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=0.981;SOR=0.779 GT:AD:DP:GQ:PL 0/1:116,99:215:99:2177,0,2786 3 124351424 rs1660038 T C 2826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-1.993;SOR=0.733 GT:AD:DP:GQ:PL 0/1:91,107:198:99:2855,0,2201 3 124369640 rs11372663 T TA 1275.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.022;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=5.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=-1.895;SOR=1.366 GT:AD:DP:GQ:PGT:PID:PL 0/1:56,34:90:99:0|1:124369640_T_TA:1313,0,3438 3 124369650 rs2291988 T C 1469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.606;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-2.249;SOR=0.864 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,44:107:99:0|1:124369640_T_TA:1498,0,3573 3 124376653 rs106520 G A 379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.347;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.67;ReadPosRankSum=-0.385;SOR=0.509 GT:AD:DP:GQ:PL 0/1:47,20:67:99:408,0,1200 3 124379817 rs333289 T C 826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.834;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.161;SOR=0.816 GT:AD:DP:GQ:PL 0/1:41,35:76:99:855,0,903 3 124412634 rs333283 G T 466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=0;SOR=0.685 GT:AD:DP:GQ:PL 0/1:36,24:60:99:495,0,918 3 124482494 rs71778313 TTTGTTGAAC T 845.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.862;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.361;SOR=1.022 GT:AD:DP:GQ:PL 0/1:47,25:72:99:883,0,2782 3 124487849 rs2291082 A G 734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-1.582;SOR=0.283 GT:AD:DP:GQ:PL 0/1:24,30:54:99:763,0,625 3 124515308 rs1803825 A G 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.8;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.212;SOR=0.68 GT:AD:DP:GQ:PL 0/1:74,89:163:99:2153,0,1634 3 124515498 rs2291087 T C 3291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.94;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=1.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.391;SOR=0.584 GT:AD:DP:GQ:PL 0/1:148,132:280:99:3320,0,3563 3 124515646 rs2291090 A C 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.659;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=1.469;SOR=0.492 GT:AD:DP:GQ:PL 0/1:113,77:190:99:1921,0,2891 3 124540332 rs61760575 G A 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.037;SOR=0.984 GT:AD:DP:GQ:PL 0/1:52,42:94:99:1002,0,1417 3 124627024 rs1127233 T G 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.097;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.449;SOR=0.535 GT:AD:DP:GQ:PL 0/1:87,64:151:99:1637,0,2070 3 124646705 rs10630030 A AAAG 6355.73 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=44.76;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:6393,433,0 3 124692689 rs2270778 C T 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.222;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.291;SOR=0.44 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1251,0,1585 3 124728626 rs6438869 A G 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.897;SOR=0.551 GT:AD:DP:GQ:PL 0/1:72,93:165:99:2235,0,1709 3 124731485 rs10804567 C G 5217.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.116 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5246,483,0 3 124731689 rs78680419 T A 2544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.746;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.39;SOR=0.744 GT:AD:DP:GQ:PL 0/1:95,92:187:99:2573,0,2457 3 124732419 . A AGAGGAGGAGGAGGAAGAG 2731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0;DP=193;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=2.248;QD=17.74;ReadPosRankSum=-0.536;SOR=0.657 GT:AD:DP:GQ:PL 0/1:85,69:154:99:2760,0,3479 3 124732618 rs6790837 A G 2320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=1.846;SOR=0.631 GT:AD:DP:GQ:PL 0/1:68,91:159:99:2349,0,1538 3 124732842 rs6438871 C A 3766.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.792 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3795,363,0 3 124738107 rs59232004 C T 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.77;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=3.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=1.142;SOR=0.413 GT:AD:DP:GQ:PL 0/1:69,46:115:99:1012,0,1867 3 124739892 rs6438874 G A 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.2;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.716;SOR=0.544 GT:AD:DP:GQ:PL 0/1:93,77:170:99:1808,0,2251 3 124746049 rs2981546 A G 1345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=0.692;SOR=1.173 GT:AD:DP:GQ:PL 0/1:47,55:102:99:1374,0,1155 3 124746182 rs2333041 C A 2199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-0.004;SOR=0.616 GT:AD:DP:GQ:PL 0/1:75,89:164:99:2228,0,1827 3 124746347 rs4404487 T C 3191.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=1.728 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3220,305,0 3 124748226 rs2860440 G A 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=1.187;SOR=0.912 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1429,0,2176 3 124774665 . G GCAT 2937.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.585;ClippingRankSum=0;DP=138;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60.78;MQRankSum=2.827;QD=21.6;ReadPosRankSum=-4.122;SOR=0.798 GT:AD:DP:GQ:PL 0/1:58,78:136:99:2975,0,2631 3 124802881 rs2981483 A G 6372.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.49;SOR=1.414 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,150:150:99:1|1:124802881_A_G:6401,451,0 3 124802888 rs2981482 C T 5919.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.51;SOR=1.505 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,133:133:99:1|1:124802881_A_G:5948,400,0 3 124837684 rs621383 T C 2834.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2863,291,0 3 124839470 rs863642 G A 3191.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3220,330,0 3 124854636 rs2981503 A T 771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.136;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.798;SOR=0.693 GT:AD:DP:GQ:PL 0/1:31,31:62:99:800,0,741 3 124951171 rs66701428 CT C 896.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.196;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=7.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=0.442;SOR=1.268 GT:AD:DP:GQ:PL 0/1:51,50:125:99:934,0,975 3 124951821 rs1053738 C T 2338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.006;SOR=0.882 GT:AD:DP:GQ:PL 0/1:107,95:202:99:2367,0,2830 3 124998098 rs10665336 C CAAA 1094.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=6.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=0.55;SOR=0.319 GT:AD:DP:GQ:PL 0/1:51,30:106:99:1132,0,2122 3 125701099 rs2270986 T C 842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.746;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-1.237;QD=9.58;ReadPosRankSum=-0.038;SOR=0.526 GT:AD:DP:GQ:PL 0/1:54,34:88:99:871,0,1443 3 125725268 rs377657493 TAACA T 2073.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.56;ReadPosRankSum=0.316;SOR=0.67 GT:AD:DP:GQ:PL 0/1:52,54:106:99:2111,0,2635 3 125726048 rs2279819 G C 2451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.386;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.94;SOR=0.659 GT:AD:DP:GQ:PL 0/1:88,92:180:99:2480,0,2319 3 125775228 rs7613944 T C 7735.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7764,744,0 3 125786879 rs4234270 T C 7048.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.989 GT:AD:DP:GQ:PL 1/1:0,221:221:99:7077,663,0 3 125826003 rs4646750 T C 1568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.614;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=4.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.083;SOR=0.657 GT:AD:DP:GQ:PL 0/1:62,72:134:99:1597,0,1280 3 125826059 rs1127717 T C 987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.626;SOR=0.818 GT:AD:DP:GQ:PL 0/1:61,45:106:99:1016,0,1517 3 125850381 rs2305228 A G 5600.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.989;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.27;ReadPosRankSum=-0.774;SOR=0.974 GT:AD:DP:GQ:PL 1/1:2,183:185:99:5629,506,0 3 125872384 rs3796191 A G 2498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.132;SOR=0.699 GT:AD:DP:GQ:PL 0/1:114,108:222:99:2527,0,2774 3 126142496 rs13064828 T C 2283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=4.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-1.612;SOR=0.979 GT:AD:DP:GQ:PL 0/1:111,93:204:99:2312,0,2723 3 126181071 rs6775965 A C 1815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.022;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-1.199;SOR=0.591 GT:AD:DP:GQ:PL 0/1:74,74:148:99:1844,0,1803 3 126194076 rs812367 T C 3744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.16;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.435;SOR=0.783 GT:AD:DP:GQ:PL 0/1:169,149:318:99:3773,0,4205 3 126194357 rs7624748 G C 6612.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.4;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6641,595,0 3 126202257 rs1687477 G A 1751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.573;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.81;SOR=0.616 GT:AD:DP:GQ:PL 0/1:90,78:168:99:1780,0,2073 3 126222856 rs139894266 C T 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.06;SOR=0.915 GT:AD:DP:GQ:PL 0/1:73,86:159:99:1913,0,1699 3 126260630 rs12495696 A G 2724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=1.236;SOR=0.844 GT:AD:DP:GQ:PL 0/1:103,114:217:99:2753,0,2500 3 126272252 rs9867693 G A 304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=1.133;SOR=0.768 GT:AD:DP:GQ:PL 0/1:30,16:46:99:333,0,797 3 126329910 rs777241 A G 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.009;QD=11.22;ReadPosRankSum=0.094;SOR=0.871 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1341,0,1330 3 126451937 rs2272487 G T 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.834;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=2.207;SOR=0.706 GT:AD:DP:GQ:PL 0/1:71,96:167:99:2294,0,1823 3 126708453 rs6773789 T C 2481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.535;SOR=0.719 GT:AD:DP:GQ:PL 0/1:115,112:227:99:2510,0,2677 3 126723549 rs28710010 C T 1766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=2.155;SOR=1.211 GT:AD:DP:GQ:PL 0/1:70,74:144:99:1795,0,1794 3 126726705 rs9876615 A G 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.511;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-1.368;SOR=0.706 GT:AD:DP:GQ:PL 0/1:82,72:154:99:1711,0,1820 3 126735453 rs9858521 C T 2303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-0.603;SOR=1.061 GT:AD:DP:GQ:PL 0/1:74,93:167:99:2332,0,1865 3 126737268 rs4679323 C A 6413.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6442,673,0 3 126741011 rs9289290 G A 2812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.026;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.313;SOR=0.804 GT:AD:DP:GQ:PL 0/1:153,123:276:99:2841,0,3630 3 126751689 rs6439031 G A 4235.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4264,429,0 3 127323830 rs893293 C T 8084.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8113,836,0 3 127336934 rs782427 A G 3437.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3466,362,0 3 127380021 rs369554526 G A 577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=1.587;SOR=0.519 GT:AD:DP:GQ:PL 0/1:33,26:59:99:606,0,860 3 127394820 rs35703629 C T 2755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.114;SOR=0.636 GT:AD:DP:GQ:PL 0/1:137,122:259:99:2784,0,3352 3 127641968 rs4141499 C A 645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=1.216;SOR=0.874 GT:AD:DP:GQ:PL 0/1:31,29:60:99:674,0,755 3 127642814 rs61268888 G C 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.625;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.04;SOR=0.519 GT:AD:DP:GQ:PL 0/1:71,60:131:99:1539,0,1757 3 127983495 rs2811544 T C 6815.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6844,713,0 3 128181777 rs2659690 A G 8211.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8240,811,0 3 128200072 rs34172218 C T 2138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.233;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-2.26;SOR=0.751 GT:AD:DP:GQ:PL 0/1:87,90:177:99:2167,0,2002 3 128205860 rs1573858 G C 4110.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4139,432,0 3 128292213 rs2734046 A G 2077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.695;SOR=0.799 GT:AD:DP:GQ:PL 0/1:81,86:167:99:2106,0,2027 3 128614133 rs1683791 C T 2288.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=1.522 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2317,237,0 3 128614185 rs1680778 A C 1774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.69;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.582;SOR=0.722 GT:AD:DP:GQ:PL 0/1:64,72:136:99:1803,0,1516 3 128627021 rs1683787 A G 1108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.921;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=-1.225;SOR=0.778 GT:AD:DP:GQ:PL 0/1:69,46:115:99:1137,0,1768 3 128627933 rs876755 C T 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.833;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.507;SOR=0.755 GT:AD:DP:GQ:PL 0/1:95,108:203:99:2501,0,2523 3 128653952 rs883602 A G 1993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.063;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=0.165;SOR=0.732 GT:AD:DP:GQ:PL 0/1:57,81:138:99:2022,0,1358 3 128663955 rs7619327 G A 2182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.616;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.235;SOR=0.512 GT:AD:DP:GQ:PL 0/1:83,91:174:99:2211,0,1852 3 128663991 rs34092381 G A 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-0.314;SOR=0.891 GT:AD:DP:GQ:PL 0/1:95,89:184:99:1914,0,2295 3 128664549 rs13059115 G T 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=0.637;SOR=0.62 GT:AD:DP:GQ:PL 0/1:90,86:176:99:2152,0,2359 3 128664654 rs9289336 G T 2544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.306;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.685;SOR=0.544 GT:AD:DP:GQ:PL 0/1:101,112:213:99:2573,0,2731 3 128720487 rs1871951 A G 10109.8 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,328:328:99:10138,984,0 3 128755814 rs3732429 T C 5927.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5956,575,0 3 128755953 rs3732430 G A 7804.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,271:271:99:7833,813,0 3 128755971 rs3732431 G A 7205.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7234,747,0 3 128859202 rs10664499 C CTTAG 5069.73 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=44.47;SOR=1.25 GT:AD:DP:GQ:PL 1/1:0,114:114:99:5107,345,0 3 128890350 rs4303883 G A 2813.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2842,273,0 3 128971113 rs4927953 T C 710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.141;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.693;SOR=1.008 GT:AD:DP:GQ:PL 0/1:24,31:55:99:739,0,536 3 128976396 rs4927910 T C 1932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.601;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.076;SOR=0.539 GT:AD:DP:GQ:PL 0/1:81,78:159:99:1961,0,2024 3 128976451 rs62266876 C G 2003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.073;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.996;SOR=0.778 GT:AD:DP:GQ:PL 0/1:117,81:198:99:2032,0,2935 3 128979256 rs6802965 C G 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.851;SOR=0.737 GT:AD:DP:GQ:PL 0/1:47,46:93:99:1034,0,1139 3 129020778 rs6765930 A G 2304.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.93;SOR=1.819 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2333,210,0 3 129034758 rs6795995 A G 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.691;SOR=0.502 GT:AD:DP:GQ:PL 0/1:44,39:83:99:1057,0,1228 3 129281980 rs2713625 C T 4298.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4327,446,0 3 129293183 rs2625962 T C 5941.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=1.267 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5970,555,0 3 129324193 rs7619850 A G 3301.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.02;SOR=1.911 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3330,299,0 3 129546729 rs784689 T C 8978.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9007,896,0 3 129694681 rs5658 C G 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.52;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.296;SOR=0.609 GT:AD:DP:GQ:PL 0/1:126,117:243:99:2677,0,3222 3 129695538 rs784704 C T 6064.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=1.536 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6093,568,0 3 129695954 rs5662 T C 10398.8 PASS AC=2;AF=1;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,339:339:99:10427,1016,0 3 129696041 rs5663 A G 7450.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.049 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7479,737,0 3 129810234 rs12495049 C T 1942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-0.111;QD=9.71;ReadPosRankSum=-1.172;SOR=0.754 GT:AD:DP:GQ:PL 0/1:105,95:200:99:1971,0,2481 3 129811073 rs13066399 T C 5312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=1.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.505;SOR=0.808 GT:AD:DP:GQ:PL 0/1:191,216:407:99:5341,0,4403 3 129813301 rs4610271 G A 3124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0.43;MLEAC=1;MLEAF=0.5;MQ=57.97;MQRankSum=1.768;QD=10.25;ReadPosRankSum=-0.837;SOR=0.727 GT:AD:DP:GQ:PL 0/1:173,132:305:99:3153,0,4547 3 129813361 rs4487280 G C 2270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=3.11;MLEAC=1;MLEAF=0.5;MQ=57.68;MQRankSum=1.044;QD=9.7;ReadPosRankSum=-0.053;SOR=0.927 GT:AD:DP:GQ:PL 0/1:145,89:234:99:2299,0,4113 3 129814934 rs55800015 GC G 7658.73 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=37;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,207:207:99:7696,623,0 3 130116696 rs12488457 A C 5227.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5256,504,0 3 130124491 rs10934940 G A 2812.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.79;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2841,313,0 3 130124989 rs4688761 C T 2635.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2664,246,0 3 130125116 rs1497312 G C 2252.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2281,222,0 3 130134492 rs16827497 T C 2961.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2990,297,0 3 130134563 rs7628563 G A 2307.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2336,240,0 3 130158465 rs78923843 A G 942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.645;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.734;SOR=0.836 GT:AD:DP:GQ:PL 0/1:42,43:85:99:971,0,901 3 130162395 rs9883988 A G 2304.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2333,245,0 3 130174334 rs819085 G A 2716.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.01;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2745,290,0 3 130187817 rs322113 T C 4231.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4260,409,0 3 130190630 rs322117 G A 2879.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2908,282,0 3 130190720 rs11355796 AT A 4150.73 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.18;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,118:118:99:4188,355,0 3 130190777 rs322118 G A 3380.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3409,339,0 3 130284284 rs9830253 G A 2308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.774;SOR=0.702 GT:AD:DP:GQ:PL 0/1:103,99:202:99:2337,0,2477 3 130286886 rs9836961 T C 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.944;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.176;SOR=0.454 GT:AD:DP:GQ:PL 0/1:48,34:82:99:861,0,1300 3 130300650 rs6439249 T C 1532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.051;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.19;SOR=0.854 GT:AD:DP:GQ:PL 0/1:57,62:119:99:1561,0,1325 3 130311398 rs73868925 C T 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.366;SOR=0.728 GT:AD:DP:GQ:PL 0/1:43,37:80:99:865,0,1124 3 130361856 rs16830494 G A 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.733;SOR=0.673 GT:AD:DP:GQ:PL 0/1:61,62:123:99:1527,0,1423 3 130368069 rs7614116 A G 2725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-1.64;SOR=0.804 GT:AD:DP:GQ:PL 0/1:90,112:202:99:2754,0,2114 3 130368301 rs7636656 G A 3026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.734;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=3.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-0.379;SOR=0.639 GT:AD:DP:GQ:PL 0/1:133,130:263:99:3055,0,2935 3 130748733 rs9864242 A G 2386.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=1.349 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2415,228,0 3 130947435 rs3738000 A T 3397.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3426,350,0 3 132063914 rs972774 A T 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.508;SOR=0.556 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1145,0,1173 3 132068831 rs2228402 C T 781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.18;SOR=0.813 GT:AD:DP:GQ:PL 0/1:39,35:74:99:810,0,1018 3 132075554 rs3181784 T C 2188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.379;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=4.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=0.255;SOR=1.027 GT:AD:DP:GQ:PL 0/1:132,90:222:99:2217,0,3162 3 132075707 rs2071505 A G 2522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.838;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=3.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.6;SOR=0.903 GT:AD:DP:GQ:PL 0/1:99,96:195:99:2551,0,2451 3 132166148 rs377096498 AT A 98.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1;ReadPosRankSum=-1.152;SOR=0.398 GT:AD:DP:GQ:PL 0/1:81,18:117:99:136,0,1902 3 132196816 rs2369796 A T 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-0.03;SOR=0.671 GT:AD:DP:GQ:PL 0/1:78,60:138:99:1129,0,1980 3 132218623 rs3762672 G T 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.609;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.611;SOR=0.678 GT:AD:DP:GQ:PL 0/1:65,52:117:99:1190,0,1539 3 132337477 rs41272317 C A 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-1.516;SOR=0.726 GT:AD:DP:GQ:PL 0/1:57,50:107:99:1116,0,1355 3 132338295 rs41272319 G A 614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-1.975;SOR=0.551 GT:AD:DP:GQ:PL 0/1:46,31:77:99:643,0,1006 3 132360883 rs821572 C T 3034.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3063,300,0 3 132363752 . TA T 41.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.8;ReadPosRankSum=-0.763;SOR=0.355 GT:AD:DP:GQ:PL 0/1:42,10:55:79:79,0,989 3 132409455 rs16839515 C T 1320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.703;SOR=0.729 GT:AD:DP:GQ:PL 0/1:53,54:107:99:1349,0,1310 3 133098806 rs34111099 C T 4301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DB;DP=371;ExcessHet=3.0103;FS=3.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-1.274;SOR=0.837 GT:AD:DP:GQ:PL 0/1:187,181:368:99:4330,0,4523 3 133099245 rs1197314 G A 3499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-1.037;SOR=0.632 GT:AD:DP:GQ:PL 0/1:174,149:323:99:3528,0,4398 3 133167363 rs2276737 G A 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.296;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-1.909;SOR=0.441 GT:AD:DP:GQ:PL 0/1:80,62:142:99:1422,0,1944 3 133191385 rs79087781 C A 2520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.715;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.903;SOR=0.577 GT:AD:DP:GQ:PL 0/1:107,107:214:99:2549,0,2796 3 133329943 rs1444601 G A 4593.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4622,471,0 3 133335787 rs3732574 C T 834.77 PASS AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,26:26:78:863,78,0 3 133356790 rs17301766 G A 2798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=0.537;SOR=0.639 GT:AD:DP:GQ:PL 0/1:86,121:207:99:2827,0,1981 3 133362154 rs17301889 A G 1882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.172;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=1.576;SOR=0.992 GT:AD:DP:GQ:PL 0/1:61,71:132:99:1911,0,1428 3 133368362 rs3192149 T G 4434.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4463,436,0 3 133485133 rs2692696 A G 4153.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4182,399,0 3 133494354 rs1049296 C T 4959.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.71;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4988,537,0 3 133524717 rs1107413 G C 7994.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,248:248:99:8023,744,0 3 133969437 . A AG 606.73 PASS AC=2;AF=1;AN=2;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.69;SOR=2.179 GT:AD:DP:GQ:PL 1/1:0,17:17:51:644,51,0 3 133969487 . G GC 1060.73 PASS AC=2;AF=1;AN=2;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.15;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1098,96,0 3 134080661 rs1077718 A G 4614.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.27;SOR=1.677 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4643,429,0 3 134278270 rs1127826 C T 2633.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.501 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2662,251,0 3 134280395 rs6777283 T A 3969.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.864;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.3;ReadPosRankSum=-0.521;SOR=0.249 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3998,382,0 3 134293619 rs4586863 A G 3269.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3298,317,0 3 134322742 rs2293293 A G 5026.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5055,486,0 3 134323156 rs4955535 A G 5715.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.23;SOR=1.07 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5744,516,0 3 134369716 rs13060869 C A 1637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.231;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.388;SOR=0.958 GT:AD:DP:GQ:PL 0/1:81,62:143:99:1666,0,2155 3 134898742 rs1042787 C T 4935.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.2;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4964,523,0 3 134920306 rs2270881 C T 1294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.148;SOR=0.916 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1323,0,1174 3 134967368 rs11717042 G A 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.986;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.473;SOR=0.654 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1576,0,1805 3 135720851 rs6779903 G T 1795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.344;SOR=0.807 GT:AD:DP:GQ:PL 0/1:94,72:166:99:1824,0,2448 3 135742057 rs113986045 G GTGTTT 1144.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.082;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.225;QD=14.68;ReadPosRankSum=0.549;SOR=0.739 GT:AD:DP:GQ:PL 0/1:46,32:78:99:1182,0,2488 3 135745911 rs16843645 G A 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-1.318;SOR=0.493 GT:AD:DP:GQ:PL 0/1:74,76:150:99:1959,0,1919 3 135797206 rs147006675 C T 689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=4.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.625;SOR=0.293 GT:AD:DP:GQ:PL 0/1:25,29:54:99:718,0,652 3 136573289 rs9865545 G A 1294.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=2.247 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1323,123,0 3 136573440 rs9827648 A G 4378.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4407,424,0 3 136574501 rs1052618 A G 2427.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2456,240,0 3 137786442 rs442800 T C 8592.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8621,855,0 3 137787041 rs115489792 C T 12457.8 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.8;SOR=0.769 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,272:272:99:1|1:137787041_C_T:12486,872,0 3 137787047 rs374045 C T 12397.8 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.2;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,287:287:99:1|1:137787041_C_T:12426,863,0 3 137787192 rs446644 T C 4513.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.95;SOR=1.734 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4542,411,0 3 137807259 rs2724693 G A 7261.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7290,746,0 3 137843106 rs2170309 T C 5900.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5929,577,0 3 137843476 rs2246945 G T 6046.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6075,567,0 3 137849888 rs79791762 C T 6688.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6717,665,0 3 137850003 rs2724691 A G 5018.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.38;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,155:155:99:5047,464,0 3 137880743 rs2622736 G A 2065.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.925;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.3;ReadPosRankSum=-0.07;SOR=0.872 GT:AD:DP:GQ:PL 1/1:3,70:73:84:2094,84,0 3 137881265 rs3732839 T A 4276.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4305,441,0 3 138213849 rs10593783 ATTTGT A 1492.73 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.9;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1530,102,0 3 138244400 rs9878436 C T 1243.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.04;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1272,137,0 3 138347957 rs641320 G A 640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=2.393;SOR=0.492 GT:AD:DP:GQ:PL 0/1:32,30:62:99:669,0,878 3 138348007 rs116620131 A G 788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.24;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-2.06;SOR=0.53 GT:AD:DP:GQ:PL 0/1:35,36:71:99:817,0,879 3 138664518 . C T 3018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.76;ClippingRankSum=0;DP=287;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.655;SOR=0.538 GT:AD:DP:GQ:PL 0/1:150,137:287:99:3047,0,3618 3 138762707 rs7636403 C G 7549.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.97;SOR=1.578 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7578,687,0 3 138763343 rs6804898 T G 15963.8 PASS AC=2;AF=1;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,507:507:99:15992,1521,0 3 139102120 rs7373302 C A 947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.933;SOR=0.556 GT:AD:DP:GQ:PL 0/1:47,43:90:99:976,0,1191 3 139173565 rs2233817 A G 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.511;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=-0.408;SOR=0.64 GT:AD:DP:GQ:PL 0/1:77,53:130:99:1170,0,1790 3 140167536 rs2081803 A G 3394.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.129 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3423,339,0 3 140178485 rs7632885 G A 2241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.352;SOR=0.605 GT:AD:DP:GQ:PL 0/1:86,97:183:99:2270,0,2143 3 140281723 rs11714465 C T 6283.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6312,642,0 3 140282861 rs10804675 C T 6396.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.88;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6425,713,0 3 140285115 rs4683510 T C 3865.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=28.64;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3894,405,0 3 140401693 rs698673 A G 8344.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8373,786,0 3 140406947 rs28594654 G A 5691.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5720,588,0 3 140407260 rs9876490 C A 7679.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7708,783,0 3 140419715 rs1540506 C T 3456.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3485,348,0 3 140675348 rs75174363 CTT C 327.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.241;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.28;ReadPosRankSum=0.118;SOR=0.425 GT:AD:DP:GQ:PL 0/1:28,17:71:99:365,0,969 3 140678384 . TA T 100.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.051;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.71;ReadPosRankSum=0.708;SOR=0.875 GT:AD:DP:GQ:PL 0/1:47,12:64:99:138,0,944 3 140784929 rs6771494 T C 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.47;ReadPosRankSum=0.948;SOR=0.924 GT:AD:DP:GQ:PL 0/1:29,59:88:99:1654,0,725 3 140785175 rs890529 C A 4870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.458;ClippingRankSum=0;DB;DP=369;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=2.193;SOR=0.695 GT:AD:DP:GQ:PL 0/1:171,198:369:99:4899,0,4097 3 140997320 rs11556022 C T 2669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.707;SOR=0.885 GT:AD:DP:GQ:PL 0/1:152,123:275:99:2698,0,3695 3 141162128 rs62282002 C G 2529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.535;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.438;SOR=0.552 GT:AD:DP:GQ:PL 0/1:114,99:213:99:2558,0,3128 3 141162185 rs16851435 T G 2490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.034;SOR=0.669 GT:AD:DP:GQ:PL 0/1:113,101:214:99:2519,0,2811 3 141162935 . C T 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.777;SOR=0.91 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1687,0,2134 3 141327474 rs295323 G A 2938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-1.26;SOR=0.812 GT:AD:DP:GQ:PL 0/1:104,123:227:99:2967,0,2504 3 141328918 rs295324 T G 810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.247;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=4.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-0.818;SOR=0.369 GT:AD:DP:GQ:PL 0/1:50,36:86:99:839,0,1253 3 141625999 rs7622417 G C 1037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.088;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.719;SOR=0.902 GT:AD:DP:GQ:PL 0/1:35,42:77:99:1066,0,865 3 141682825 rs3792409 C G 1179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.34;SOR=0.669 GT:AD:DP:GQ:PL 0/1:63,46:109:99:1208,0,1687 3 141697353 rs11569225 T C 1042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-1.794;SOR=1.086 GT:AD:DP:GQ:PL 0/1:49,44:93:99:1071,0,1192 3 141932356 rs6440072 G A 1583.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.287 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1612,159,0 3 142078759 rs73238159 C T 1830.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1859,188,0 3 142116151 rs2291363 A G 2847.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.216 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2876,276,0 3 142123732 . T C 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=0.132;SOR=0.843 GT:AD:DP:GQ:PL 0/1:51,68:119:99:1575,0,1247 3 142123841 rs2306700 C T 3756.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3785,395,0 3 142168331 rs1802904 C T 4058.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4087,393,0 3 142178144 rs2229032 C T 5873.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5902,617,0 3 142277575 rs2227930 A T 4291.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4320,447,0 3 142281612 rs2227928 A G 5040.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5069,482,0 3 142408606 rs6793735 G A 3611.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3640,377,0 3 142413407 rs6789958 C T 895.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,31:31:93:924,93,0 3 142467310 rs56246347 C T 2690.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2719,275,0 3 142503605 rs7621642 G A 4033.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4062,399,0 3 142523349 rs3821647 G A 3069.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3098,303,0 3 142524858 rs1132030 G A 2785.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.77;SOR=1.967 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2814,255,0 3 142567327 rs893883 G A 2586.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=1.638 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2615,249,0 3 142681249 rs62276870 G A 2528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.434;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=1.224;SOR=0.7 GT:AD:DP:GQ:PL 0/1:129,100:229:99:2557,0,3349 3 143293012 rs6763202 A G 1535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-1.85;SOR=0.886 GT:AD:DP:GQ:PL 0/1:63,65:128:99:1564,0,1453 3 145796891 rs73010484 T C 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.554;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=6.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=-0.108;SOR=1.089 GT:AD:DP:GQ:PL 0/1:35,38:73:99:1024,0,830 3 145838895 rs4681297 C T 456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.617;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-2.184;SOR=0.99 GT:AD:DP:GQ:PL 0/1:31,19:50:99:485,0,816 3 145917761 rs1061409 T C 919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=1.445;SOR=0.415 GT:AD:DP:GQ:PL 0/1:33,36:69:99:948,0,874 3 145938619 rs3762685 T C 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-1.201;SOR=0.687 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1123,0,981 3 146177815 rs6806535 C T 1469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.52;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.41;SOR=1.031 GT:AD:DP:GQ:PL 0/1:74,64:138:99:1498,0,1745 3 146311937 rs147223969 CA C 462.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.962;QD=9.64;ReadPosRankSum=-0.259;SOR=0.723 GT:AD:DP:GQ:PL 0/1:22,26:48:99:500,0,476 3 146318263 rs9867955 G A 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.089;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=0.742;SOR=0.881 GT:AD:DP:GQ:PL 0/1:88,62:150:99:1434,0,2088 3 147121751 rs6766244 C T 1331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=1.26;SOR=0.805 GT:AD:DP:GQ:PL 0/1:89,59:148:99:1360,0,2472 3 148562272 rs145346983 G A 754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.027;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=-1.492;SOR=0.888 GT:AD:DP:GQ:PL 0/1:43,34:77:99:783,0,908 3 148597612 rs12489516 C T 3136.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3165,317,0 3 148756825 rs6764352 G A 1930.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.646 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1959,194,0 3 148757864 rs2229361 C T 961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=5.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.28;SOR=0.827 GT:AD:DP:GQ:PL 0/1:37,44:81:99:990,0,842 3 148781246 rs61755303 A T 299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.345;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.17;ReadPosRankSum=-1.382;SOR=0.659 GT:AD:DP:GQ:PL 0/1:41,17:58:99:328,0,929 3 148786108 rs812249 C T 1597.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1626,165,0 3 148863151 rs11718908 A G 1183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.167;SOR=0.495 GT:AD:DP:GQ:PL 0/1:54,54:108:99:1212,0,1242 3 148872987 rs6440589 G A 223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.14;ReadPosRankSum=-1.25;SOR=0.699 GT:AD:DP:GQ:PL 0/1:39,15:54:99:252,0,1062 3 148901300 rs115552500 C T 1244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.954;SOR=0.695 GT:AD:DP:GQ:PL 0/1:57,57:114:99:1273,0,1363 3 148916235 rs701753 T A 3513.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.02;QD=31.66;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3542,333,0 3 149093238 rs4771 A G 5358.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5387,552,0 3 149192676 rs12488126 G A 5080.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.159 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5109,507,0 3 149192851 rs143312618 G GC 3787.73 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.77;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3825,310,0 3 149238595 rs112399999 C CTTAA 3681.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.23;ReadPosRankSum=0.044;SOR=0.536 GT:AD:DP:GQ:PL 0/1:88,94:182:99:3719,0,4224 3 149459341 rs7633238 A G 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=-0.564;SOR=0.389 GT:AD:DP:GQ:PL 0/1:43,61:104:99:1445,0,997 3 149485901 rs3839072 T TG 1058.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.497;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=6.884;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.867;QD=15.57;ReadPosRankSum=-1.768;SOR=1.538 GT:AD:DP:GQ:PL 0/1:28,40:68:99:1096,0,710 3 149678534 rs6768054 C T 4135.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4164,407,0 3 150128154 rs61734437 T C 4554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.253;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-1.2;SOR=0.757 GT:AD:DP:GQ:PL 0/1:168,176:344:99:4583,0,4285 3 150128392 rs879634 G A 3599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=5.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-2.087;SOR=1.005 GT:AD:DP:GQ:PL 0/1:164,153:317:99:3628,0,4333 3 150128484 rs3749400 C A 3913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.862;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=12.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.334;SOR=0.873 GT:AD:DP:GQ:PL 0/1:158,159:317:99:3942,0,4382 3 150128994 rs34647320 T G 2884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=6.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.582;SOR=0.431 GT:AD:DP:GQ:PL 0/1:122,119:241:99:2913,0,3228 3 150280445 rs1132979 C G 942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.23;SOR=0.513 GT:AD:DP:GQ:PL 0/1:46,43:89:99:971,0,1199 3 150286088 rs62283993 T A 739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.136;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.47;ReadPosRankSum=2.639;SOR=0.752 GT:AD:DP:GQ:PL 0/1:63,36:99:99:768,0,1476 3 150384657 rs114572143 G A 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=6.417;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=1.03;SOR=0.543 GT:AD:DP:GQ:PL 0/1:61,76:137:99:1808,0,1449 3 150384807 rs6440691 T G 3310.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.265 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3339,321,0 3 150391810 rs73003074 A C 661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.127;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.52;ReadPosRankSum=0.019;SOR=0.356 GT:AD:DP:GQ:PL 0/1:52,36:88:99:690,0,1387 3 150403749 rs4680107 T C 642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-1.38;SOR=0.735 GT:AD:DP:GQ:PL 0/1:30,28:58:99:671,0,819 3 150421419 rs17281287 G A 5384.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5413,516,0 3 151011944 rs12492699 A C 1825.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=2.066 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1854,168,0 3 151011969 rs1048408 G A 2011.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.646 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2040,195,0 3 151012497 rs2242353 T C 4189.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.34;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4218,366,0 3 151046308 rs1466684 G A 2884.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2913,276,0 3 151056598 rs6809699 A C 4870.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4899,503,0 3 151073033 rs7615865 T C 2005.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2034,201,0 3 151112568 rs3732768 G A 5528.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5557,563,0 3 151154666 rs2172250 T C 5787.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5816,555,0 3 151155620 rs6781302 G A 4110.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4139,401,0 3 151165678 rs9871952 T C 4406.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4435,417,0 3 151166422 rs6798252 C T 4846.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4875,468,0 3 151171439 rs7619322 A C 3728.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3757,348,0 3 151171542 rs7621591 A G 2723.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=1.375 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2752,254,0 3 151545601 rs1803155 G A 4467.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4496,438,0 3 153839866 rs12493885 G C 8182.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.38;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,238:238:99:8211,715,0 3 153839959 rs59508481 C T 9741.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.52;SOR=0.811 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,214:214:99:1|1:153839959_C_T:9770,668,0 3 153839960 rs12497267 T C 9741.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.88;SOR=0.748 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,222:222:99:1|1:153839959_C_T:9770,668,0 3 153972500 rs355749 T C 2405.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2434,246,0 3 154002357 rs200020002 A AT 333.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.064;QD=7.58;ReadPosRankSum=-1.522;SOR=1.426 GT:AD:DP:GQ:PL 0/1:24,20:47:99:371,0,459 3 154018887 rs9438 G C 1417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.252;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.338;SOR=0.418 GT:AD:DP:GQ:PL 0/1:66,56:122:99:1446,0,1788 3 154033066 rs71308484 G A 584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.189;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=1.758;SOR=0.546 GT:AD:DP:GQ:PL 0/1:42,27:69:99:613,0,1048 3 155200133 rs150418951 T C 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=7.922;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=1.251;SOR=0.481 GT:AD:DP:GQ:PL 0/1:61,69:130:99:1741,0,1575 3 155212325 rs3214639 G GA 1964.73 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=29.32;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2002,201,0 3 155241740 rs9840234 A G 1583.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.874;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.4;ReadPosRankSum=-0.603;SOR=0.836 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1612,131,0 3 155314034 rs359569 A G 1229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.52;SOR=0.715 GT:AD:DP:GQ:PL 0/1:42,50:92:99:1258,0,1028 3 155639959 rs3772117 A G 974.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.08;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1003,107,0 3 156266642 rs6809188 C T 2948.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=1.449 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2977,297,0 3 156570703 rs414683 A G 2521.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.12;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2550,278,0 3 157082082 rs3833585 C CAA 1112.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.541;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.61;ReadPosRankSum=-0.019;SOR=0.593 GT:AD:DP:GQ:PL 0/1:38,29:67:99:1150,0,1665 3 157154861 rs2305619 A G 4272.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4301,399,0 3 157155314 rs3816527 C A 5517.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5546,570,0 3 157823581 . A ACACCTCCTC 1943.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.822;ClippingRankSum=0;DP=139;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.5;MQ=61.99;MQRankSum=6.346;QD=16.2;ReadPosRankSum=0.882;SOR=0.752 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1981,0,3982 3 158320597 rs4875 T C 3590.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.25;SOR=1.343 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3619,324,0 3 158320703 rs15967 C A 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=1.06;SOR=0.648 GT:AD:DP:GQ:PL 0/1:88,67:155:99:1432,0,2048 3 158362441 rs1864507 T C 2971.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3000,309,0 3 158366900 rs2303909 G A 867.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.12;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,32:32:96:896,96,0 3 158367837 rs56167308 C T 1073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=0.698;SOR=0.676 GT:AD:DP:GQ:PL 0/1:72,53:125:99:1102,0,1684 3 158388780 rs8455 T C 1240.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.57;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1269,135,0 3 158409262 rs1047355 C T 2297.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.164 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2326,225,0 3 158428642 rs2307064 G A 4328.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4357,461,0 3 158449965 rs6441223 T C 7165.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7194,671,0 3 158450178 rs6786423 A G 7826.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7855,743,0 3 158537415 rs146160361 CTTTTT C 2147.73 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.53;QD=43.83;SOR=1.225 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,49:49:99:1|1:158537415_CTTTTT_C:2185,148,0 3 158537443 rs3765083 A G 2371.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.17;QD=43.12;SOR=0.97 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,55:55:99:1|1:158537415_CTTTTT_C:2400,169,0 3 158538056 rs4680469 T C 1072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=-0.635;SOR=0.62 GT:AD:DP:GQ:PL 0/1:29,46:75:99:1101,0,701 3 159609989 rs74495285 G A 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-0.547;SOR=0.634 GT:AD:DP:GQ:PL 0/1:85,75:160:99:1575,0,2135 3 159976432 rs58665245 G GA 752.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=2.058;QD=8.01;ReadPosRankSum=-1.129;SOR=0.674 GT:AD:DP:GQ:PL 0/1:56,38:97:99:790,0,1104 3 159995356 rs3737214 A G 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.19;ReadPosRankSum=-0.225;SOR=0.482 GT:AD:DP:GQ:PL 0/1:15,31:46:99:819,0,372 3 159997061 rs6778728 T A 638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.026;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=1.211;SOR=0.65 GT:AD:DP:GQ:PL 0/1:43,28:71:99:667,0,1145 3 160130110 rs2305407 G A 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=0.557;SOR=0.58 GT:AD:DP:GQ:PL 0/1:27,21:48:99:522,0,756 3 160156951 rs1141023 C T 473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=0.312;SOR=0.757 GT:AD:DP:GQ:PL 0/1:30,21:51:99:502,0,819 3 160955882 rs200517975 CTT C 969.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.78;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.863;QD=20.2;ReadPosRankSum=-0.316;SOR=0.846 GT:AD:DP:GQ:PL 0/1:24,24:59:99:1007,0,674 3 160967354 rs4290817 G A 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=5.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=1.83;SOR=0.275 GT:AD:DP:GQ:PL 0/1:24,31:55:99:646,0,587 3 161221705 rs3921595 A C 1395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=3.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=0.074;SOR=1.104 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1424,0,1163 3 164714532 rs4855271 C T 773.77 PASS AC=2;AF=1;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.64;SOR=2.4 GT:AD:DP:GQ:PL 1/1:0,23:23:69:802,69,0 3 164733721 rs2290738 G A 2515.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.275 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2544,252,0 3 164748665 rs11452619 C CA 508.25 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.731;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=4.378;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.467;QD=17.53;ReadPosRankSum=-0.108;SOR=1.232 GT:AD:DP:GQ:PL 0/1:5,24:38:77:536,0,77 3 164764719 rs9838509 C A 3197.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3226,324,0 3 164773057 rs9290257 G A 1920.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.44;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1949,209,0 3 164777677 rs9290259 T G 2895.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.122 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2924,293,0 3 164783165 rs9283633 T C 1911.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=30.83;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1940,186,0 3 164786629 rs11313475 TA T 1354.73 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.05;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1392,156,0 3 166960278 rs11923256 G T 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.46;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.9;ReadPosRankSum=-1.179;SOR=0.846 GT:AD:DP:GQ:PL 0/1:28,41:69:99:1056,0,726 3 167023738 rs13096767 G C 2497.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2526,258,0 3 167034814 rs13068132 T C 2418.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2447,251,0 3 167051769 rs11923054 T C 1926.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=1.812 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1955,178,0 3 167068256 rs4619784 T A 1799.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1828,171,0 3 167077691 rs4257551 T A 1802.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1831,186,0 3 167762678 rs57702503 C CA 555.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.363;SOR=0.675 GT:AD:DP:GQ:PL 0/1:18,28:49:99:593,0,294 3 168806987 rs1981745 G A 432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=0.254;SOR=0.932 GT:AD:DP:GQ:PL 0/1:28,20:48:99:461,0,763 3 168810874 rs17466625 C T 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.225;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=0.526;SOR=0.736 GT:AD:DP:GQ:PL 0/1:92,53:145:99:1222,0,2173 3 169486144 rs9822885 A G 1053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-2.382;SOR=0.512 GT:AD:DP:GQ:PL 0/1:48,42:90:99:1082,0,1327 3 169492101 rs10936599 C T 949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-2.418;SOR=0.905 GT:AD:DP:GQ:PL 0/1:50,41:91:99:978,0,1344 3 169514585 rs10936600 A T 1227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.542;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.554;SOR=0.572 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1256,0,1388 3 169518455 rs6793295 T C 709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=6.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.116;SOR=0.992 GT:AD:DP:GQ:PL 0/1:36,32:68:99:738,0,911 3 169525509 . CA C 84.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=5.501;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.819;QD=3.85;ReadPosRankSum=-0.937;SOR=0.692 GT:AD:DP:GQ:PL 0/1:12,10:33:99:113,0,257 3 169540397 rs1920119 T C 3616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=0.419;SOR=0.701 GT:AD:DP:GQ:PL 0/1:108,145:253:99:3645,0,2581 3 169550759 rs12486767 G A 737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.564;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.299;SOR=0.633 GT:AD:DP:GQ:PL 0/1:40,33:73:99:766,0,943 3 169558025 rs3732451 C T 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.652;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.183;SOR=0.542 GT:AD:DP:GQ:PL 0/1:91,85:176:99:2073,0,2143 3 169566090 rs9290375 A G 1441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.5;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.991;SOR=0.701 GT:AD:DP:GQ:PL 0/1:57,60:117:99:1470,0,1356 3 169644710 rs10513680 G C 1980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-1.453;SOR=0.606 GT:AD:DP:GQ:PL 0/1:66,75:141:99:2009,0,1673 3 169654216 rs9836170 G A 764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=1.265;SOR=0.749 GT:AD:DP:GQ:PL 0/1:32,35:67:99:793,0,748 3 169710363 rs2160898 G T 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=1.214;SOR=0.416 GT:AD:DP:GQ:PL 0/1:23,29:52:99:823,0,687 3 169988364 . CT C 504.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.093;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.82;ReadPosRankSum=-0.385;SOR=0.722 GT:AD:DP:GQ:PL 0/1:43,31:121:99:542,0,767 3 170078232 rs3772173 C T 5176.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.29;ReadPosRankSum=-0.502;SOR=0.26 GT:AD:DP:GQ:PL 1/1:1,182:183:99:5205,503,0 3 170198967 rs1861939 G A 6112.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6141,600,0 3 170825905 rs6444960 C G 5047.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5076,520,0 3 170825920 rs2291900 G A 1061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.818;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.76;ReadPosRankSum=0.062;SOR=0.613 GT:AD:DP:GQ:PL 0/1:104,53:157:99:1090,0,2474 3 170846676 . CA C 192.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.95;QD=3.11;ReadPosRankSum=1.501;SOR=0.66 GT:AD:DP:GQ:PL 0/1:44,18:95:99:230,0,780 3 170893070 rs12637875 G A 4173.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4202,449,0 3 171065010 rs3082367 G GA 512.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=1.678;QD=8.27;ReadPosRankSum=-1.189;SOR=0.625 GT:AD:DP:GQ:PL 0/1:32,30:80:99:550,0,623 3 171087469 rs3796295 G A 2920.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2949,276,0 3 171338237 rs9881788 T G 2488.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2517,240,0 3 171395468 rs2124147 A G 3198.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.115 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3227,315,0 3 171404478 rs2290480 C A 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.1;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-2.82;SOR=0.561 GT:AD:DP:GQ:PL 0/1:22,29:51:99:646,0,623 3 171405384 rs2305547 A T 1667.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.821;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=21.38;ReadPosRankSum=0.648;SOR=0.321 GT:AD:DP:GQ:PL 1/1:6,72:78:83:1696,83,0 3 172046861 rs2270568 T C 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.039;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=-1.802;SOR=0.598 GT:AD:DP:GQ:PL 0/1:58,75:133:99:1796,0,1191 3 172166033 rs495225 G A 3242.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.462;SOR=0.843 GT:AD:DP:GQ:PL 0/1:144,135:279:99:3271,0,3692 3 172224303 rs1131532 A G 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.638;SOR=0.526 GT:AD:DP:GQ:PL 0/1:81,82:163:99:2111,0,2091 3 172428782 rs2276805 T C 2169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-1.507;SOR=0.721 GT:AD:DP:GQ:PL 0/1:104,88:192:99:2198,0,2628 3 172631461 rs62622782 A G 1058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.165;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=1.207;SOR=0.653 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1087,0,1051 3 172631512 rs115095786 G A 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.744;SOR=0.582 GT:AD:DP:GQ:PL 0/1:40,42:82:99:1019,0,1049 3 172643300 rs146509162 G A 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.127;SOR=0.701 GT:AD:DP:GQ:PL 0/1:60,66:126:99:1491,0,1487 3 174814738 rs9823911 G A 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.848;SOR=0.58 GT:AD:DP:GQ:PL 0/1:81,84:165:99:2059,0,2030 3 174814920 rs9836841 A G 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.438;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=0.499;SOR=0.966 GT:AD:DP:GQ:PL 0/1:84,64:148:99:1525,0,2080 3 174951756 rs4371530 T C 686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.405;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=0.75;SOR=0.792 GT:AD:DP:GQ:PL 0/1:34,28:62:99:715,0,822 3 175165079 rs6802937 C T 2745.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2774,288,0 3 175189406 rs35213579 CT C 1495.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=5.019;MLEAC=2;MLEAF=1;MQ=60.39;MQRankSum=-5.001;QD=27.7;ReadPosRankSum=-1.284;SOR=1.658 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1533,152,0 3 175189417 rs79264590 G A 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.425;QD=12.32;ReadPosRankSum=1.093;SOR=0.523 GT:AD:DP:GQ:PL 0/1:34,35:69:99:878,0,837 3 175189447 rs9290555 G A 938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.457;QD=11.31;ReadPosRankSum=-0.433;SOR=0.568 GT:AD:DP:GQ:PL 0/1:42,41:83:99:967,0,1047 3 175345143 rs9866564 C G 2885.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2914,300,0 3 175473047 rs9826737 T C 3684.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3713,345,0 3 176756230 rs77478951 G A 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=5.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.068;SOR=0.349 GT:AD:DP:GQ:PL 0/1:68,56:124:99:1361,0,1840 3 176765269 rs3749234 T C 943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.237;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=0.813;SOR=0.688 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,40:89:99:0|1:176765253_G_A:972,0,1166 3 178546026 rs9831934 T C 4390.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4419,432,0 3 178560581 rs6443583 A C 4136.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4165,384,0 3 178785549 rs6772028 G A 5073.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.405 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5102,498,0 3 178922274 rs2699896 C A 359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.229;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.83;SOR=0.644 GT:AD:DP:GQ:PL 0/1:18,17:35:99:388,0,372 3 178937346 rs41273619 T C 495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.52;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.32;MQRankSum=-0.021;QD=15.99;ReadPosRankSum=-0.837;SOR=0.559 GT:AD:DP:GQ:PL 0/1:14,17:31:99:524,0,386 3 178957783 rs3976507 C T 926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.361;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.134;MLEAC=1;MLEAF=0.5;MQ=59.2;MQRankSum=0.009;QD=12.7;ReadPosRankSum=-0.32;SOR=1.083 GT:AD:DP:GQ:PL 0/1:34,39:73:99:955,0,778 3 178961038 rs139527128 T C 455.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.166;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.52;MQRankSum=0.849;QD=9.7;ReadPosRankSum=1.876;SOR=0.668 GT:AD:DP:GQ:PL 0/1:26,21:47:99:484,0,573 3 178962491 rs59453404 G GA 543.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.25;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=5.361;MLEAC=1;MLEAF=0.5;MQ=58.22;MQRankSum=-3.597;QD=9.54;ReadPosRankSum=3.375;SOR=0.283 GT:AD:DP:GQ:PL 0/1:28,29:62:99:581,0,532 3 178968634 rs7645550 C T 2326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.553;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=1.167;SOR=0.469 GT:AD:DP:GQ:PL 0/1:78,101:179:99:2355,0,1970 3 179092989 rs9865666 C T 3795.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3824,390,0 3 179096508 rs7637065 C G 3661.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3690,380,0 3 179103342 rs35893655 C CT 2876.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.146;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=6.771;MLEAC=2;MLEAF=1;MQ=60.08;MQRankSum=0.334;QD=23.58;ReadPosRankSum=0.378;SOR=1.41 GT:AD:DP:GQ:PL 1/1:11,111:128:99:2914,107,0 3 179137273 rs1362650 A G 1783.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.44;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1812,193,0 3 179298999 rs1132429 C T 999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=0.417;SOR=0.963 GT:AD:DP:GQ:PL 0/1:62,49:111:99:1028,0,1395 3 179371154 rs2276803 C T 3401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.279;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=3.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=1.474;SOR=0.768 GT:AD:DP:GQ:PL 0/1:144,148:292:99:3430,0,3301 3 179448066 rs11309768 AT A 1518.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;MQRankSum=0.316;QD=21.39;ReadPosRankSum=1.738;SOR=0.678 GT:AD:DP:GQ:PL 1/1:5,66:77:91:1556,91,0 3 179481971 rs71917525 CTG C 3349.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-1.177;SOR=0.809 GT:AD:DP:GQ:PL 0/1:133,123:287:99:3387,0,3422 3 179527459 rs35082123 G GAA 703.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=6.445;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.056;QD=11.93;ReadPosRankSum=1.916;SOR=1.467 GT:AD:DP:GQ:PL 0/1:37,22:72:99:741,0,1038 3 180680889 . AT A 45.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DP=29;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.91;ReadPosRankSum=1.018;SOR=0.182 GT:AD:DP:GQ:PL 0/1:17,7:24:83:83,0,306 3 182546017 rs9814205 C A 822.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,27:27:81:851,81,0 3 182681740 rs4859146 C T 3856.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3885,401,0 3 182681853 rs4859147 T C 2435.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.845;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.7;ReadPosRankSum=1.939;SOR=1.824 GT:AD:DP:GQ:PL 1/1:2,80:82:99:2464,196,0 3 182755209 rs2270968 T G 3634.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.63 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3663,347,0 3 182790249 rs7622479 G A 3608.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3637,381,0 3 182853670 rs482912 T C 3458.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.44;ReadPosRankSum=-0.778;SOR=0.547 GT:AD:DP:GQ:PL 1/1:1,109:110:99:3487,289,0 3 182871962 rs653316 C T 5756.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5785,572,0 3 182925404 rs6804951 T C 2747.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2776,269,0 3 183027542 rs7639705 T G 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.335;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.438;SOR=0.757 GT:AD:DP:GQ:PL 0/1:81,66:147:99:1694,0,1940 3 183211906 rs1520101 A G 4986.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5015,509,0 3 183212026 rs2256061 C T 1441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.578;SOR=0.542 GT:AD:DP:GQ:PL 0/1:70,68:138:99:1470,0,1583 3 183535763 rs897604 A G 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.436;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.173;SOR=0.722 GT:AD:DP:GQ:PL 0/1:34,41:75:99:1026,0,711 3 183543291 rs263006 G A 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.621;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=5.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.607;SOR=0.42 GT:AD:DP:GQ:PL 0/1:85,100:185:99:2110,0,2122 3 183558402 rs3732581 C G 561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.083;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.91;ReadPosRankSum=1.747;SOR=0.836 GT:AD:DP:GQ:PL 0/1:42,29:71:99:590,0,937 3 183560195 rs13091 A G 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.357;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.774;SOR=0.601 GT:AD:DP:GQ:PL 0/1:33,40:73:99:997,0,704 3 183706368 rs28365004 G A 3079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.581;SOR=0.65 GT:AD:DP:GQ:PL 0/1:145,135:280:99:3108,0,3650 3 183754294 rs6443930 G C 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.84;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=6.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-1.293;SOR=0.535 GT:AD:DP:GQ:PL 0/1:101,83:184:99:2253,0,2821 3 183755822 rs1000952 G A 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.577;SOR=0.55 GT:AD:DP:GQ:PL 0/1:95,108:203:99:2452,0,2173 3 183756426 rs6799766 T C 4279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.85;MQRankSum=-8.916;QD=13.46;ReadPosRankSum=-1.278;SOR=0.673 GT:AD:DP:GQ:PL 0/1:147,171:318:99:4308,0,3541 3 183756702 rs6789754 G A 3759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.528;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-1.863;QD=11.26;ReadPosRankSum=-0.709;SOR=0.696 GT:AD:DP:GQ:PL 0/1:179,155:334:99:3788,0,4390 3 183756742 rs55674402 C T 2789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.084;QD=11.07;ReadPosRankSum=-1.289;SOR=1.037 GT:AD:DP:GQ:PL 0/1:137,115:252:99:2818,0,3594 3 183756780 rs6765152 A C 2005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.716;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.659;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=-1.112;QD=11.66;ReadPosRankSum=0.976;SOR=0.992 GT:AD:DP:GQ:PL 0/1:96,76:172:99:2034,0,2440 3 183774762 rs6766410 C A 1661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.897;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-1.038;SOR=0.882 GT:AD:DP:GQ:PL 0/1:56,72:128:99:1690,0,1439 3 183777919 rs6807271 G A 2751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.014;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0.021;QD=13.83;ReadPosRankSum=2.585;SOR=0.67 GT:AD:DP:GQ:PL 0/1:98,101:199:99:2780,0,3048 3 183778010 rs6807362 G C 3923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.621;SOR=0.64 GT:AD:DP:GQ:PL 0/1:155,164:319:99:3952,0,3852 3 183818416 rs7627615 G A 5046.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5075,497,0 3 183823576 rs4912524 T C 5181.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5210,519,0 3 183861243 rs843358 A G 2713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.381;SOR=0.756 GT:AD:DP:GQ:PL 0/1:102,117:219:99:2742,0,2346 3 183888180 rs367640106 C T 3299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=5.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.743;SOR=0.445 GT:AD:DP:GQ:PL 0/1:140,140:280:99:3328,0,3625 3 183904049 rs11539876 A G 4138.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4167,395,0 3 183948663 rs1687225 G A 3593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.443;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.216;SOR=0.758 GT:AD:DP:GQ:PL 0/1:187,139:326:99:3622,0,4665 3 183951135 rs729377 C T 4309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.106;ClippingRankSum=0;DB;DP=369;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=1.649;SOR=0.721 GT:AD:DP:GQ:PL 0/1:189,179:368:99:4338,0,4401 3 183951431 rs902417 C T 3402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.63;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=2.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=2.765;SOR=0.602 GT:AD:DP:GQ:PL 0/1:135,144:279:99:3431,0,3337 3 183953972 rs1709657 G A 2186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.002;SOR=0.612 GT:AD:DP:GQ:PL 0/1:91,96:187:99:2215,0,2180 3 183955109 rs843334 C T 3256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.549;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=1.268;SOR=0.72 GT:AD:DP:GQ:PL 0/1:124,136:260:99:3285,0,2825 3 183957467 rs843332 G T 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.261;SOR=0.573 GT:AD:DP:GQ:PL 0/1:92,90:182:99:2388,0,2554 3 183959508 rs28606531 A C 3935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.839;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-1.116;SOR=0.727 GT:AD:DP:GQ:PL 0/1:162,165:327:99:3964,0,4217 3 183975365 rs7633387 C T 6138.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6167,611,0 3 183976108 rs902415 T C 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.08;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=0.54;SOR=0.61 GT:AD:DP:GQ:PL 0/1:78,89:167:99:2253,0,1809 3 183976241 rs6767237 A G 3847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.467;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=5.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-1.882;SOR=0.992 GT:AD:DP:GQ:PL 0/1:130,150:280:99:3876,0,3011 3 183995854 rs2272471 G A 2218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.85;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=-1.31;SOR=0.672 GT:AD:DP:GQ:PL 0/1:148,92:240:99:2247,0,3631 3 183996044 rs55920130 A G 3040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.248;SOR=0.775 GT:AD:DP:GQ:PL 0/1:134,135:269:99:3069,0,3322 3 183996068 rs3752904 C T 3076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.94;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=0.175;SOR=0.719 GT:AD:DP:GQ:PL 0/1:139,116:255:99:3105,0,3306 3 184037533 rs13319149 A G 5036.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5065,513,0 3 184039666 rs2178403 A G 3965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.359;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.351;SOR=0.718 GT:AD:DP:GQ:PL 0/1:200,165:365:99:3994,0,4707 3 184045799 rs939317 A G 1367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.32;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=0.304;SOR=0.847 GT:AD:DP:GQ:PL 0/1:77,58:135:99:1396,0,1929 3 184046470 rs2230571 C T 2196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=6.119;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.389;SOR=1.039 GT:AD:DP:GQ:PL 0/1:92,98:190:99:2225,0,2210 3 184062776 rs9839000 A G 5394.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5423,534,0 3 184071019 rs11920716 T C 5455.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.72;SOR=1.071 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,122:122:99:1|1:184071017_G_A:5484,370,0 3 184071063 rs9820367 G C 5431.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5460,512,0 3 184072459 rs73189624 G A 2122.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,75:78:99:2151,223,0 3 184075958 rs41266271 C T 6231.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6260,632,0 3 184081371 rs41559914 G T 616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=0.677;SOR=0.784 GT:AD:DP:GQ:PL 0/1:40,31:71:99:645,0,962 3 184082931 rs11556518 T C 867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.76;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=0.545;SOR=0.665 GT:AD:DP:GQ:PL 0/1:29,32:61:99:896,0,713 3 184098193 rs1920128 A C 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.857;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-0.406;SOR=0.705 GT:AD:DP:GQ:PL 0/1:100,89:189:99:1975,0,2135 3 184099378 rs35929225 C A 2252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.025;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-1.775;SOR=0.693 GT:AD:DP:GQ:PL 0/1:144,92:236:99:2281,0,3744 3 184100338 rs73189656 G A 3030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=7.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.619;SOR=0.988 GT:AD:DP:GQ:PL 0/1:136,122:258:99:3059,0,3589 3 184100961 rs3833587 G GT 6270.73 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.99;QD=37.33;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,168:168:99:6308,505,0 3 184102396 rs16858778 C T 3100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.978;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.067;SOR=0.763 GT:AD:DP:GQ:PL 0/1:116,131:247:99:3129,0,2593 3 184103903 rs16858780 A C 2502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-1.25;SOR=0.444 GT:AD:DP:GQ:PL 0/1:96,102:198:99:2531,0,2441 3 184289152 rs13069661 A G 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.152;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.247;SOR=0.697 GT:AD:DP:GQ:PL 0/1:84,84:168:99:1877,0,1866 3 184429332 rs34540780 T C 2920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.045;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.29;ReadPosRankSum=0.549;SOR=0.56 GT:AD:DP:GQ:PL 0/1:85,106:191:99:2949,0,2120 3 184550501 rs9830734 A G 1174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.833;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.047;SOR=0.46 GT:AD:DP:GQ:PL 0/1:58,50:108:99:1203,0,1274 3 184556483 rs62286936 T C 596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.913;SOR=0.826 GT:AD:DP:GQ:PL 0/1:20,27:47:99:625,0,436 3 184573555 rs6443999 C T 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.726;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.603;SOR=0.693 GT:AD:DP:GQ:PL 0/1:60,52:112:99:1190,0,1373 3 184587274 rs61741194 A G 1239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.526;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-0.036;SOR=0.564 GT:AD:DP:GQ:PL 0/1:47,52:99:99:1268,0,1083 3 184633247 rs4686879 A C 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.757;SOR=0.801 GT:AD:DP:GQ:PL 0/1:65,69:134:99:1720,0,1512 3 184647413 rs4643688 T C 1973.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2002,192,0 3 184700356 rs4572747 A C 3060.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.57;SOR=1.35 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3089,330,0 3 184766249 rs6779564 T C 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.072;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.93;ReadPosRankSum=1.896;SOR=0.614 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,72:140:99:0|1:184766249_T_C:2819,0,2587 3 184766250 rs6766721 C T 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.08;ReadPosRankSum=1.742;SOR=0.636 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,72:139:99:0|1:184766249_T_C:2819,0,2587 3 184766301 rs3821750 T C 2219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.088;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.158;SOR=0.544 GT:AD:DP:GQ:PL 0/1:71,93:164:99:2248,0,1680 3 184910133 rs11919970 G T 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=5.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=0.341;SOR=0.883 GT:AD:DP:GQ:PL 0/1:111,77:188:99:1674,0,2724 3 184911151 rs3732933 T C 1962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.276;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.13;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=1.554;SOR=0.65 GT:AD:DP:GQ:PL 0/1:110,81:191:99:1991,0,2585 3 184947212 rs41268595 A G 1091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.213;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.323;SOR=0.542 GT:AD:DP:GQ:PL 0/1:50,45:95:99:1120,0,1160 3 185146702 rs3732577 C T 2236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.897;SOR=0.505 GT:AD:DP:GQ:PL 0/1:95,95:190:99:2265,0,2380 3 185155430 rs5855064 C CT,CTT 1565.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.13;MQRankSum=0.372;QD=22.69;ReadPosRankSum=-1.415;SOR=0.836 GT:AD:DP:GQ:PL 1/2:7,42,20:73:99:1603,404,355,764,0,854 3 185331165 rs6762208 C A 1943.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1972,198,0 3 185990096 rs2193587 C T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.994;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=0.018;SOR=0.892 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1473,0,1339 3 186006566 rs710443 T C 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.033;SOR=0.711 GT:AD:DP:GQ:PL 0/1:85,102:187:99:2233,0,1825 3 186006618 rs1004588 G C 4716.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4745,481,0 3 186302391 rs140269415 A AGTGTGTGTGTGT,ATTGTGTGTGTGTGT 4707.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.228;MLEAC=1,1;MLEAF=0.5,0.5;MQ=62.97;MQRankSum=-0.788;QD=35.4;ReadPosRankSum=1.991;SOR=0.583 GT:AD:DP:GQ:PL 1/2:3,72,58:189:99:4745,2741,2729,1706,0,4015 3 186337713 rs4917 T C 947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.8;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=1.272;SOR=0.784 GT:AD:DP:GQ:PL 0/1:58,44:102:99:976,0,1316 3 186338382 rs4918 G C 2160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.508;SOR=0.683 GT:AD:DP:GQ:PL 0/1:95,83:178:99:2189,0,2588 3 186338425 rs1071592 A C 8394.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=1.301 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8423,816,0 3 186386776 rs4516605 C G 600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.231;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-0.736;QD=7.9;ReadPosRankSum=-0.967;SOR=0.591 GT:AD:DP:GQ:PL 0/1:48,28:76:99:629,0,1135 3 186395180 rs7629680 T C 8475.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.849;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.51;ReadPosRankSum=-0.672;SOR=0.365 GT:AD:DP:GQ:PL 1/1:1,268:269:99:8504,796,0 3 186435370 rs1050274 G A 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.575;SOR=0.395 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1144,0,1454 3 186507922 rs2066500 C T 656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.267;SOR=0.546 GT:AD:DP:GQ:PL 0/1:42,27:69:99:685,0,1174 3 186509517 rs187868 G A 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.453;SOR=0.748 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1228,0,1463 3 186917751 rs6764714 C G 2856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=1.383;SOR=0.778 GT:AD:DP:GQ:PL 0/1:81,107:188:99:2885,0,2103 3 186953808 rs850312 C T 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.269;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=5.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.077;SOR=1.055 GT:AD:DP:GQ:PL 0/1:104,88:192:99:2218,0,2698 3 186954285 rs710452 A G 6719.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6748,654,0 3 187088812 rs3821812 C T 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.507;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.328;SOR=0.726 GT:AD:DP:GQ:PL 0/1:95,87:182:99:1996,0,2499 3 187088903 rs1533595 C A 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.592;SOR=0.655 GT:AD:DP:GQ:PL 0/1:109,85:194:99:2088,0,2998 3 187088926 rs1533594 G A 6326.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6355,642,0 3 187089031 rs1003995 C A 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=5.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.363;SOR=0.413 GT:AD:DP:GQ:PL 0/1:116,92:208:99:2135,0,2890 3 187416634 rs1973791 C A 4281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=5.156;MLEAC=1;MLEAF=0.5;MQ=55.02;MQRankSum=-0.975;QD=13.68;ReadPosRankSum=2.048;SOR=0.479 GT:AD:DP:GQ:PL 0/1:149,164:313:99:4310,0,3918 3 187416719 rs11707167 T C 10341.8 PASS AC=2;AF=1;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.91;QD=29.63;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,349:349:99:10370,1047,0 3 187447032 rs1056932 G A 9667.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9696,953,0 3 188327461 rs1059380 C T 2437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.82;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=0.212;SOR=0.866 GT:AD:DP:GQ:PL 0/1:86,98:184:99:2466,0,2246 3 189690816 rs71674435 G GA 965.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.906;QD=9.75;ReadPosRankSum=0.725;SOR=0.78 GT:AD:DP:GQ:PL 0/1:53,46:120:99:1003,0,1018 3 189702395 rs11311050 TA T 1033.73 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=23.49;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1071,131,0 3 189712010 rs1719600 G A 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.797;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1.724;QD=9.26;ReadPosRankSum=0.222;SOR=0.747 GT:AD:DP:GQ:PL 0/1:74,55:129:99:1223,0,2042 3 189712089 rs1719599 G A 3693.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.64;QD=43.97;SOR=1.075 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,84:84:99:1|1:189712089_G_A:3722,253,0 3 189712090 rs1719598 G A 3693.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.65;QD=44.5;SOR=1.048 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,83:83:99:1|1:189712089_G_A:3722,253,0 3 189713205 rs9821880 T C 1637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.455;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=1.516;SOR=0.89 GT:AD:DP:GQ:PL 0/1:70,66:136:99:1666,0,1676 3 190030680 rs9869263 A G 4706.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4735,471,0 3 190158168 rs35161724 G C 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.379;SOR=0.632 GT:AD:DP:GQ:PL 0/1:71,78:149:99:1888,0,1820 3 190167533 rs10513852 C T 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.914;SOR=0.727 GT:AD:DP:GQ:PL 0/1:47,52:99:99:1108,0,1010 3 190345098 rs34908328 GT G 859.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.634;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=2.036;QD=9.77;ReadPosRankSum=-0.804;SOR=0.771 GT:AD:DP:GQ:PL 0/1:40,48:91:99:897,0,880 3 190578566 rs13075089 A G 3372.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3401,342,0 3 190995847 rs3214008 T C 2026.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2055,209,0 3 190999872 rs6444534 G A 1854.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.355 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1883,180,0 3 190999917 rs6788319 C A 2525.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2554,258,0 3 190999990 rs6444535 C T 2287.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2316,239,0 3 191047532 rs9847278 A G 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.621;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.346;SOR=0.735 GT:AD:DP:GQ:PL 0/1:75,79:154:99:1762,0,1586 3 191074873 rs188384 C G 563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-1.262;SOR=0.527 GT:AD:DP:GQ:PL 0/1:26,23:49:99:592,0,725 3 191075902 rs11542549 C T 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.27;SOR=0.651 GT:AD:DP:GQ:PL 0/1:112,116:228:99:2715,0,2715 3 191093053 rs2028572 T C 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.613;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.049;SOR=0.578 GT:AD:DP:GQ:PL 0/1:96,72:168:99:1712,0,2404 3 191093175 rs2028574 T A 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.398;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-1.174;SOR=0.687 GT:AD:DP:GQ:PL 0/1:91,94:185:99:2344,0,2226 3 191093310 rs4677728 A G 2157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.35;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.036;SOR=0.872 GT:AD:DP:GQ:PL 0/1:84,83:167:99:2186,0,1976 3 191093384 rs4677729 A G 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.217;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-1.411;SOR=0.929 GT:AD:DP:GQ:PL 0/1:58,58:116:99:1475,0,1383 3 191097928 rs34031057 G GT 327.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.99;ReadPosRankSum=1.476;SOR=0.638 GT:AD:DP:GQ:PL 0/1:22,19:46:99:365,0,392 3 191097966 rs293813 T C 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.598;SOR=0.779 GT:AD:DP:GQ:PL 0/1:32,38:70:99:803,0,712 3 191098731 rs211043 G A 777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=-0.376;SOR=0.951 GT:AD:DP:GQ:PL 0/1:44,38:82:99:806,0,988 3 191100561 rs364519 C A 720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.381;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.111;SOR=0.957 GT:AD:DP:GQ:PL 0/1:32,32:64:99:749,0,729 3 191179193 rs293833 A G 5969.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5998,597,0 3 191857059 rs74319492 T TA 1423.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.087;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.735;SOR=0.758 GT:AD:DP:GQ:PL 0/1:68,64:134:99:1461,0,1312 3 191888452 rs34265167 GA G 150.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.636;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.82;ReadPosRankSum=0.7;SOR=1.24 GT:AD:DP:GQ:PL 0/1:64,19:83:99:188,0,1419 3 193031875 rs78188075 C T 2455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-1.265;SOR=0.853 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2484,0,2343 3 193031926 rs2280268 C T 4750.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4779,467,0 3 193036794 rs6788770 G C 3035.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3064,315,0 3 193042776 rs11926955 T C 4540.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4569,468,0 3 193080344 rs12636830 C T 4517.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4546,467,0 3 193081122 rs12637558 G T 3582.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3611,375,0 3 193096529 rs4687419 C T 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.219;SOR=0.711 GT:AD:DP:GQ:PL 0/1:45,38:83:99:925,0,1056 3 193180592 rs59451116 G A 3019.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3048,300,0 3 193183817 rs3796181 A G 3938.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3967,407,0 3 193209178 rs6788448 T C 1958.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1987,198,0 3 193210768 rs2130407 A G 2800.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.34;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2829,252,0 3 193355074 rs166850 T C 1537.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1566,162,0 3 193855467 rs148500265 C T 1255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.094;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=1.092;SOR=0.678 GT:AD:DP:GQ:PL 0/1:61,50:111:99:1284,0,1615 3 194061826 rs11711157 C T 3596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=5.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=0.935;SOR=0.476 GT:AD:DP:GQ:PL 0/1:102,147:249:99:3625,0,2366 3 194061906 rs4974538 T C 9330.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.62;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,248:248:99:9359,748,0 3 194061907 rs4974539 G A 2767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.26;SOR=0.689 GT:AD:DP:GQ:PL 0/1:131,113:244:99:2796,0,3521 3 194062519 rs3732477 C T 2299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.935;SOR=0.736 GT:AD:DP:GQ:PL 0/1:112,99:211:99:2328,0,2830 3 194062565 rs3732476 C T 6359.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6388,646,0 3 194063153 rs3732474 G A 2719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.769;SOR=0.828 GT:AD:DP:GQ:PL 0/1:132,119:251:99:2748,0,3195 3 194063300 rs62288099 T C 4505.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4534,447,0 3 194080336 rs4974533 G A 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-0.012;SOR=0.706 GT:AD:DP:GQ:PL 0/1:131,71:202:99:1641,0,3476 3 194080648 rs9682540 G A 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.635;SOR=0.68 GT:AD:DP:GQ:PL 0/1:120,117:237:99:2869,0,3082 3 194080696 rs9682541 G A 3125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.848;SOR=0.622 GT:AD:DP:GQ:PL 0/1:128,125:253:99:3154,0,3167 3 194080916 rs13070515 G A 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.29;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=1.498;SOR=0.799 GT:AD:DP:GQ:PL 0/1:129,92:221:99:2257,0,3028 3 194080983 rs13060627 C T 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.983;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=-0.309;SOR=0.643 GT:AD:DP:GQ:PL 0/1:115,82:197:99:1959,0,2858 3 194081089 rs11713861 C T 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=1.354;SOR=0.661 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1839,0,2188 3 194081179 rs11715737 G A 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=4.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.479;SOR=0.609 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1848,0,1814 3 194081392 rs923936 G A 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.884;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=5.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.115;SOR=0.79 GT:AD:DP:GQ:PL 0/1:119,103:222:99:2536,0,2941 3 194081635 rs923935 T C 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.615;SOR=0.602 GT:AD:DP:GQ:PL 0/1:127,104:231:99:2489,0,3143 3 194118874 rs1223989 T C 4530.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4559,438,0 3 194325010 rs745168 G A 6550.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.205 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6579,653,0 3 194337901 rs922282 T C 6419.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6448,633,0 3 194349178 rs1563970 C T 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.55;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.7;SOR=0.571 GT:AD:DP:GQ:PL 0/1:101,117:218:99:2574,0,2272 3 194373832 rs1675953 T C 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.75;ReadPosRankSum=-0.636;SOR=0.499 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,58:130:99:0|1:194373832_T_C:2206,0,4062 3 194373833 rs1705991 G A 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.88;ReadPosRankSum=-0.433;SOR=0.532 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,57:129:99:0|1:194373832_T_C:2206,0,4062 3 194390869 rs36028600 G GA 1499.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.367;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.73;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.871;QD=14.02;ReadPosRankSum=-0.896;SOR=0.776 GT:AD:DP:GQ:PL 0/1:45,62:107:99:1537,0,910 3 194408704 rs4677673 A G 3512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=3.792;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.609;SOR=0.521 GT:AD:DP:GQ:PL 0/1:154,143:297:99:3541,0,3999 3 195245805 rs17847362 G A 1591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.979;QD=13.16;ReadPosRankSum=0.133;SOR=0.67 GT:AD:DP:GQ:PL 0/1:59,62:121:99:1620,0,1539 3 195447871 rs11185524 C T 87.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0;DB;DP=404;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=1.64;QD=0.22;ReadPosRankSum=0.048;SOR=0.706 GT:AD:DP:GQ:PL 0/1:358,45:403:99:116,0,9389 3 195447886 rs7627924 G C 4082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DB;DP=453;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.25;MQRankSum=-6.133;QD=9.01;ReadPosRankSum=1.843;SOR=0.69 GT:AD:DP:GQ:PL 0/1:275,178:453:99:4111,0,6968 3 195451880 rs142096782 A G 6306.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.39;QD=44.73;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,141:141:99:1|1:195451880_A_G:6335,424,0 3 195451881 rs146888306 G A 6306.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.39;QD=44.73;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,141:141:99:1|1:195451880_A_G:6335,424,0 3 195451917 rs369019587 G T 699.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.864;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=129.794;MLEAC=1;MLEAF=0.5;MQ=37.79;MQRankSum=-5.576;QD=3.84;ReadPosRankSum=-4.977;SOR=7.427 GT:AD:DP:GQ:PL 0/1:142,40:182:99:728,0,3156 3 195452005 rs145612981 C T 130.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.548;ClippingRankSum=0;DB;DP=434;ExcessHet=3.0103;FS=20.316;MLEAC=1;MLEAF=0.5;MQ=40.18;MQRankSum=-3.482;QD=0.3;ReadPosRankSum=-7.939;SOR=2.656 GT:AD:DP:GQ:PL 0/1:394,40:434:99:159,0,8515 3 195452136 . C T 407.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.777;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.5;MQ=22.91;MQRankSum=-2.138;QD=8.68;ReadPosRankSum=0.335;SOR=1.681 GT:AD:DP:GQ:PL 0/1:24,23:47:99:436,0,475 3 195452770 rs2550231 G A 3953.77 SNP_FS_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-11.769;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=175.989;MLEAC=1;MLEAF=0.5;MQ=39.85;MQRankSum=10.772;QD=15.15;ReadPosRankSum=-1.325;SOR=0.001 GT:AD:DP:GQ:PL 0/1:110,151:261:99:3982,0,2709 3 195452799 rs2550232 C T 4566.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-11.584;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=123.128;MLEAC=1;MLEAF=0.5;MQ=48.02;MQRankSum=11.189;QD=19.68;ReadPosRankSum=1.761;SOR=0.001 GT:AD:DP:GQ:PL 0/1:60,172:232:99:4595,0,1566 3 195452814 rs199753483 C T 119.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.72;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=49.317;MLEAC=1;MLEAF=0.5;MQ=50.61;MQRankSum=-8.254;QD=0.52;ReadPosRankSum=-1.332;SOR=4.781 GT:AD:DP:GQ:PL 0/1:202,27:229:99:148,0,7914 3 195452951 rs2688542 G C 8592.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.72;QD=32.8;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8621,786,0 3 195452987 rs9866681 G A 2630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.5;MQ=57.95;MQRankSum=-10.109;QD=8.86;ReadPosRankSum=1.984;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 0/1:219,78:297:99:0|1:195452987_G_A:2659,0,8941 3 195452991 rs3828411 C T 2612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.5;MQ=58.04;MQRankSum=-9.923;QD=8.46;ReadPosRankSum=1.96;SOR=0.7 GT:AD:DP:GQ:PGT:PID:PL 0/1:226,83:309:99:0|1:195452987_G_A:2641,0,9086 3 195453064 rs2550233 T G 9595.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.19;QD=32.86;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,292:292:99:9624,875,0 3 195453205 rs9870815 G A 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.068;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.5;MQ=54.8;MQRankSum=-6.937;QD=4.7;ReadPosRankSum=-0.544;SOR=0.877 GT:AD:DP:GQ:PL 0/1:248,82:330:99:1580,0,6479 3 195453243 rs3828408 C T 2312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.61;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=-9.185;QD=7.25;ReadPosRankSum=-0.793;SOR=0.777 GT:AD:DP:GQ:PGT:PID:PL 0/1:243,76:319:99:0|1:195453243_C_T:2341,0,12051 3 195453257 rs3828406 G A 2371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.389;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=3.631;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=-8.399;QD=7.53;ReadPosRankSum=-0.912;SOR=0.926 GT:AD:DP:GQ:PGT:PID:PL 0/1:237,78:315:99:0|1:195453243_C_T:2400,0,11890 3 195453406 rs3210209 G C 3010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.671;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.5;MQ=57.95;MQRankSum=-11.597;QD=8.18;ReadPosRankSum=2.062;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 0/1:274,94:368:99:0|1:195453406_G_C:3039,0,14302 3 195453412 rs1063306 C T 2961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.293;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=4.077;MLEAC=1;MLEAF=0.5;MQ=57.87;MQRankSum=-11.708;QD=8.23;ReadPosRankSum=1.346;SOR=0.949 GT:AD:DP:GQ:PGT:PID:PL 0/1:269,91:360:99:0|1:195453406_G_C:2990,0,14266 3 195456561 rs3762739 C G 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.83;ReadPosRankSum=-0.079;SOR=0.6 GT:AD:DP:GQ:PL 0/1:132,74:206:99:1641,0,3489 3 195477791 rs2291652 G A 5839.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.68;QD=29.05;SOR=1.213 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5868,597,0 3 195479237 rs67175307 C T 1598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.523;SOR=0.663 GT:AD:DP:GQ:PL 0/1:52,71:123:99:1627,0,1155 3 195479256 rs2258447 T C 3768.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3797,366,0 3 195487737 rs2246771 A G 4889.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4918,528,0 3 195489009 rs2246901 C A 8536.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8565,848,0 3 195489067 rs2246980 C G 2599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.887;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=1.628;SOR=0.675 GT:AD:DP:GQ:PL 0/1:125,108:233:99:2628,0,2948 3 195490284 rs2550261 T C 6629.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=1.222 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6658,636,0 3 195495916 rs2550240 G C 9085.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9114,895,0 3 195497174 rs2259102 C G 5457.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5486,541,0 3 195501149 rs2259292 C T 2426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.919;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.316;SOR=0.81 GT:AD:DP:GQ:PL 0/1:125,108:233:99:2455,0,3496 3 195505247 rs76650792 G T 835.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.667;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.5;MQ=32.79;MQRankSum=-0.253;QD=14.41;ReadPosRankSum=0.763;SOR=0.54 GT:AD:DP:GQ:PL 0/1:22,36:58:99:864,0,409 3 195505664 rs2688513 G A 3778.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.63;QD=34.99;SOR=3.872 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3807,324,0 3 195506303 rs192584273 G T 10054.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.987;ClippingRankSum=0;DB;DP=385;ExcessHet=3.0103;FS=8.489;MLEAC=2;MLEAF=1;MQ=59.29;MQRankSum=7.092;QD=26.67;ReadPosRankSum=0.319;SOR=0.156 GT:AD:DP:GQ:PL 1/1:12,365:377:99:10083,910,0 3 195506473 . A ACTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATG 13030.8 PASS AC=2;AF=1;AN=2;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.22;QD=125.3;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,104:104:99:13059,932,0 3 195506974 rs142066159 G A 46.98 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.94;MQRankSum=1.15;QD=11.74;ReadPosRankSum=-1.15;SOR=0.916 GT:AD:DP:GQ:PL 0/1:1,3:4:13:75,0,13 3 195507064 . G C 130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.44;MQRankSum=2.189;QD=18.68;ReadPosRankSum=1.006;SOR=0.368 GT:AD:DP:GQ:PGT:PID:PL 0/1:3,4:7:99:0|1:195507064_G_C:159,0,114 3 195507083 rs78552467 T C 129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.57;MQRankSum=2.45;QD=16.22;ReadPosRankSum=-0.18;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,4:8:99:0|1:195507064_G_C:158,0,116 3 195507086 rs79944988 C G 126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.12;MQRankSum=2.45;QD=15.85;ReadPosRankSum=-0.18;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,4:8:99:0|1:195507064_G_C:155,0,119 3 195507097 rs76083001 G A 126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.44;MQRankSum=2.189;QD=18.11;ReadPosRankSum=-1.068;SOR=0.368 GT:AD:DP:GQ:PGT:PID:PL 0/1:3,4:7:99:0|1:195507064_G_C:155,0,119 3 195508393 rs201623571 A G 121.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.009;ClippingRankSum=-0;DB;DP=17;ExcessHet=3.0103;FS=18.243;MLEAC=1;MLEAF=0.5;MQ=35.98;MQRankSum=0.791;QD=8.7;ReadPosRankSum=-0.944;SOR=1.026 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,6:14:99:0|1:195508393_A_G:150,0,318 3 195508414 . GGCACAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAA G 112.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.113;ClippingRankSum=-0;DP=17;ExcessHet=3.0103;FS=18.243;MLEAC=1;MLEAF=0.5;MQ=35.98;MQRankSum=0.791;QD=8.05;ReadPosRankSum=-3.291;SOR=1.026 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,6:14:99:0|1:195508393_A_G:150,0,318 3 195508478 . GACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC G 182.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.268;ClippingRankSum=-0;DP=17;ExcessHet=3.0103;FS=11.553;MLEAC=1;MLEAF=0.5;MQ=35.98;MQRankSum=-1.192;QD=13.05;ReadPosRankSum=0.938;SOR=4.169 GT:AD:DP:GQ:PL 0/1:7,7:14:99:220,0,194 3 195509331 rs369416005 C A 3912.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.665;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=6.394;MLEAC=1;MLEAF=0.5;MQ=37.12;MQRankSum=-2.118;QD=16.37;ReadPosRankSum=-1.118;SOR=0.411 GT:AD:DP:GQ:PGT:PID:PL 0/1:132,107:239:99:0|1:195509331_C_A:3941,0,5159 3 195509339 . C T 3857.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.578;ClippingRankSum=0;DP=237;ExcessHet=3.0103;FS=7.512;MLEAC=1;MLEAF=0.5;MQ=37.15;MQRankSum=-1.87;QD=16.35;ReadPosRankSum=-1.633;SOR=0.389 GT:AD:DP:GQ:PGT:PID:PL 0/1:133,103:236:99:0|1:195509331_C_A:3886,0,5165 3 195509346 rs371492604 G T 3704.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=7.878;MLEAC=1;MLEAF=0.5;MQ=37.39;MQRankSum=-2.203;QD=16.25;ReadPosRankSum=-2.589;SOR=0.36 GT:AD:DP:GQ:PGT:PID:PL 0/1:128,100:228:99:0|1:195509346_G_T:3733,0,5093 3 195509367 . G A 1835.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.209;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.23;MQRankSum=-0.428;QD=14.23;ReadPosRankSum=-3.363;SOR=0.692 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,46:129:99:0|1:195509346_G_T:1864,0,3581 3 195509374 rs62282479 T G 1396.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.64;MQRankSum=0.353;QD=15.87;ReadPosRankSum=-4.327;SOR=0.788 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,27:88:99:0|1:195509346_G_T:1425,0,2945 3 195509382 . G C 534.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.5;MQ=36.53;MQRankSum=0.339;QD=8.36;ReadPosRankSum=-4.773;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 0/1:48,16:64:99:0|1:195509346_G_T:563,0,2048 3 195509387 . C T 132.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=35.05;MQRankSum=0.747;QD=2.82;ReadPosRankSum=-3.472;SOR=1.27 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,6:47:99:0|1:195509346_G_T:161,0,1826 3 195509429 rs28542401 A G 340.89 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DB;DP=16;ExcessHet=3.0103;FS=9.031;MLEAC=1;MLEAF=0.5;MQ=29.8;MQRankSum=-2.47;QD=21.31;ReadPosRankSum=2.106;SOR=5.421 GT:AD:DP:GQ:PL 0/1:2,14:16:2:367,0,2 3 195510762 rs2911273 G A 8790.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.95;MQRankSum=3.243;QD=43.3;ReadPosRankSum=-0.925;SOR=0.669 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,200:203:99:1|1:195510762_G_A:8819,485,0 3 195510773 rs2911272 A G 9698.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.41;QD=44.69;SOR=1.067 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,217:217:99:1|1:195510762_G_A:9727,659,0 3 195510786 rs2948677 T G 9799.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.646;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.4;MQRankSum=2.741;QD=40.49;ReadPosRankSum=1.831;SOR=0.649 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,239:242:99:1|1:195510762_G_A:9828,592,0 3 195511142 rs430037 T C 1157.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.03;QD=37.35;SOR=2.694 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1186,93,0 3 195511331 rs56359992 A G 8785.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.43;QD=30.09;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8814,870,0 3 195511523 rs142766505 C G 9111.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.763;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=5.707;MLEAC=2;MLEAF=1;MQ=41.35;MQRankSum=-1.521;QD=42.58;ReadPosRankSum=0.24;SOR=1.454 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,211:214:99:1|1:195511523_C_G:9140,535,0 3 195511525 rs199709753 T C 9147.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.632;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=5.667;MLEAC=2;MLEAF=1;MQ=40.58;MQRankSum=-1.645;QD=44.19;ReadPosRankSum=0.885;SOR=1.44 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,204:207:99:1|1:195511523_C_G:9176,538,0 3 195511526 rs200787582 C T 9123.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.786;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=5.559;MLEAC=2;MLEAF=1;MQ=40.25;MQRankSum=-1.702;QD=44.72;ReadPosRankSum=0.96;SOR=1.4 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,201:204:99:1|1:195511523_C_G:9152,535,0 3 195511590 rs3103955 A G 3534.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.46;QD=44.74;SOR=3.726 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,79:79:99:1|1:195511523_C_G:3563,246,0 3 195511668 rs3107748 G A 274.78 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=16;ExcessHet=3.0103;FS=25.611;MLEAC=1;MLEAF=0.5;MQ=36.29;MQRankSum=2.739;QD=19.63;ReadPosRankSum=-0.867;SOR=4.97 GT:AD:DP:GQ:PL 0/1:3,11:14:26:303,0,26 3 195512107 rs374495657 T A 241.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.87;QD=30.22;SOR=4.407 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,8:8:24:1|1:195512042_T_C:270,24,0 3 195512186 rs202060675 T C 733.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.85;QD=34.94;SOR=6.184 GT:AD:DP:GQ:PL 1/1:0,21:21:63:762,63,0 3 195512245 rs62282486 T C 2445.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.89;QD=34.45;SOR=3.105 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2474,212,0 3 195512480 rs200533337 A G 6361.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.245;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=9.142;MLEAC=2;MLEAF=1;MQ=48.37;MQRankSum=-1.386;QD=30.44;ReadPosRankSum=1.047;SOR=0.04 GT:AD:DP:GQ:PL 1/1:4,205:209:99:6390,499,0 3 195513173 rs77448757 G A 5366.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.771;ClippingRankSum=0;DB;DP=426;ExcessHet=3.0103;FS=51.285;MLEAC=1;MLEAF=0.5;MQ=39.06;MQRankSum=-7.803;QD=12.6;ReadPosRankSum=-5.103;SOR=1.879 GT:AD:DP:GQ:PL 0/1:244,182:426:99:5395,0,9893 3 195513180 rs77724343 C G 5655.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.782;ClippingRankSum=0;DB;DP=418;ExcessHet=3.0103;FS=50.593;MLEAC=1;MLEAF=0.5;MQ=39.35;MQRankSum=-8.768;QD=13.53;ReadPosRankSum=-5.466;SOR=1.959 GT:AD:DP:GQ:PL 0/1:266,152:418:99:5684,0,6064 3 195513203 rs77879173 C T 2600.77 SNP_FS_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.523;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=148.455;MLEAC=1;MLEAF=0.5;MQ=40.1;MQRankSum=-8.903;QD=6.65;ReadPosRankSum=-8.906;SOR=4.066 GT:AD:DP:GQ:PGT:PID:PL 0/1:307,84:391:99:0|1:195513203_C_T:2629,0,12671 3 195513207 rs78338106 A G 2256.77 SNP_FS_filter;SNP_ReadPosRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.555;ClippingRankSum=0;DB;DP=385;ExcessHet=3.0103;FS=167.322;MLEAC=1;MLEAF=0.5;MQ=40;MQRankSum=-8.937;QD=5.86;ReadPosRankSum=-8.813;SOR=5.252 GT:AD:DP:GQ:PGT:PID:PL 0/1:313,72:385:99:0|1:195513203_C_T:2285,0,13076 3 195513214 rs75583821 A G 1705.77 SNP_FS_filter;SNP_ReadPosRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.971;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=170.568;MLEAC=1;MLEAF=0.5;MQ=40.11;MQRankSum=-8.485;QD=4.5;ReadPosRankSum=-9.301;SOR=6.836 GT:AD:DP:GQ:PGT:PID:PL 0/1:318,61:379:99:0|1:195513203_C_T:1734,0,13535 3 195513223 rs2641777 C G 1027.77 SNP_FS_filter;SNP_ReadPosRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.3;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=145.421;MLEAC=1;MLEAF=0.5;MQ=40.72;MQRankSum=-8.061;QD=2.76;ReadPosRankSum=-9.267;SOR=7.701 GT:AD:DP:GQ:PGT:PID:PL 0/1:327,46:373:99:0|1:195513203_C_T:1056,0,14252 3 195513227 rs74695732 C T 369.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.057;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=96.67;MLEAC=1;MLEAF=0.5;MQ=41.64;MQRankSum=-6.906;QD=1;ReadPosRankSum=-7.276;SOR=6.869 GT:AD:DP:GQ:PGT:PID:PL 0/1:338,30:368:99:0|1:195513203_C_T:398,0,14217 3 195513345 rs71321841 A C 7523.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.31;MQRankSum=1.144;QD=32.57;ReadPosRankSum=-0.494;SOR=1.266 GT:AD:DP:GQ:PGT:PID:PL 1/1:2,229:231:99:1|1:195513345_A_C:7552,654,0 3 195513420 rs71321842 G A 2704.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.754;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.54;MQRankSum=1.272;QD=44.34;ReadPosRankSum=0.627;SOR=1.121 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,60:61:98:1|1:195513345_A_C:2733,98,0 3 195513426 rs77396971 G T 2444.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.787;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.47;MQRankSum=1.242;QD=43.66;ReadPosRankSum=-1.124;SOR=1.211 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,55:56:74:1|1:195513345_A_C:2473,74,0 3 195513433 rs74419078 G A 1485.96 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.44;MQRankSum=0.749;QD=53.07;ReadPosRankSum=-1.616;SOR=2.376 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,27:28:5:1|1:195513345_A_C:1513,5,0 3 195513442 . G T 430.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.46;ClippingRankSum=0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.36;MQRankSum=0;QD=39.16;ReadPosRankSum=-1.46;SOR=1.981 GT:AD:DP:GQ:PGT:PID:PL 0/1:1,10:11:70:0|1:195513345_A_C:459,0,70 3 195513445 rs201442668 C T 388.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.74;MQRankSum=-0.566;QD=55.54;ReadPosRankSum=-1.465;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 0/1:1,6:7:73:0|1:195513345_A_C:417,0,73 3 195513446 . T C 346.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.77;MQRankSum=-0.524;QD=69.35;ReadPosRankSum=-1.282;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:1,4:5:76:0|1:195513345_A_C:375,0,76 3 195515008 rs201451131 C G 723.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.22;MQRankSum=0.588;QD=26.81;ReadPosRankSum=0.065;SOR=0.368 GT:AD:DP:GQ:PL 1/1:1,26:27:56:752,56,0 3 195515315 rs71617321 A G 1053.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.43;QD=40.53;SOR=5.136 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,26:26:78:1|1:195515315_A_G:1082,78,0 3 195515340 rs79661483 G A 1268.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.62;QD=40.93;SOR=6.932 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,31:31:93:1|1:195515315_A_G:1297,93,0 3 195515414 rs71180964 T TGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATTCTGAGGAAGTGTC 3531.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.71;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.94;MQRankSum=2.325;QD=117.72;ReadPosRankSum=-2.769;SOR=0.651 GT:AD:DP:GQ:PL 1/1:3,27:30:99:3569,115,0 3 195515422 . G GGAAGAGGGGTGGCGTGACCTGTGGATTCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGCATCGGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGCATCGGTGACAT 2635.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.1;MQRankSum=-3.174;QD=25.1;ReadPosRankSum=-2.935;SOR=0.832 GT:AD:DP:GQ:PL 0/1:99,6:105:99:2673,0,3566 3 195515594 rs13095016 C G 3842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.078;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-1.795;SOR=0.7 GT:AD:DP:GQ:PL 0/1:170,147:317:99:3871,0,4458 3 195515617 rs2641776 G C 10799.8 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.16;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,283:283:99:10828,851,0 3 195516630 rs3103954 G T 5985.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6014,588,0 3 195516878 rs2177336 T C 7255.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7284,707,0 3 195517258 rs1106502 G A 5028.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5057,494,0 3 195517321 rs1104760 G A 4833.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4862,467,0 3 195517553 rs882605 A C 4661.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4690,450,0 3 195518112 rs142781032 T TGTCTCCTGCGTAACA 5050.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.296;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;MQRankSum=0;QD=34.83;ReadPosRankSum=-0.314;SOR=0.794 GT:AD:DP:GQ:PL 1/1:2,143:145:99:5088,424,0 3 195518330 rs3107764 C G 3655.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.15;SOR=1.848 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3684,312,0 3 195778972 rs1805051 C T 1765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=0.762;SOR=0.717 GT:AD:DP:GQ:PL 0/1:110,82:192:99:1794,0,2664 3 195782176 rs419068 C T 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=-0.093;SOR=0.742 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,41:87:99:0|1:195782176_C_T:1625,0,4043 3 195782177 rs366268 A G 1593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.327;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.11;ReadPosRankSum=-0.43;SOR=0.777 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,42:88:99:0|1:195782176_C_T:1622,0,4065 3 195782184 rs419059 C T 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.41;ReadPosRankSum=0.348;SOR=0.507 GT:AD:DP:GQ:PGT:PID:PL 0/1:43,37:80:99:0|1:195782176_C_T:1421,0,3920 3 195789708 rs2239640 G T 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.459;SOR=0.463 GT:AD:DP:GQ:PL 0/1:43,39:82:99:841,0,1045 3 195798258 rs480760 T C 3007.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3036,317,0 3 195800811 rs3817672 C T 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.941;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.48;SOR=0.533 GT:AD:DP:GQ:PL 0/1:93,95:188:99:2373,0,2130 3 195936337 rs201286461 G T 3456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=6.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.392;SOR=0.601 GT:AD:DP:GQ:PL 0/1:116,149:265:99:3485,0,2676 3 195936382 rs11719281 G A 3107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=1.897;SOR=0.911 GT:AD:DP:GQ:PL 0/1:115,131:246:99:3136,0,2736 3 195955762 rs939885 G A 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.978;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.612;SOR=0.822 GT:AD:DP:GQ:PL 0/1:64,59:123:99:1448,0,1532 3 195956827 rs17852687 T C 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.092;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.315;SOR=0.442 GT:AD:DP:GQ:PL 0/1:93,87:180:99:2286,0,2258 3 195959924 rs1476331 T C 876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.271;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.27;ReadPosRankSum=-0.827;SOR=0.807 GT:AD:DP:GQ:PL 0/1:67,39:106:99:905,0,1670 3 196050834 rs35643777 C T 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.051;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=0.661;SOR=0.469 GT:AD:DP:GQ:PL 0/1:94,73:167:99:1735,0,2272 3 196051131 rs57405871 C T 1323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-1.526;SOR=0.919 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1352,0,1212 3 196054439 rs6785339 T G 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.302;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-2.031;SOR=1.067 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1490,0,1705 3 196088809 rs368893517 TA T 102.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=2.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.9;ReadPosRankSum=0.15;SOR=1.037 GT:AD:DP:GQ:PL 0/1:39,15:66:99:140,0,861 3 196096400 rs144406807 T TA 267.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.203;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.69;ReadPosRankSum=-0.499;SOR=1.375 GT:AD:DP:GQ:PL 0/1:25,15:44:99:305,0,503 3 196199204 rs3796129 G T 1075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.288;SOR=0.693 GT:AD:DP:GQ:PL 0/1:53,43:96:99:1104,0,1335 3 196386964 rs1798631 C G 2383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.458;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=-0.765;SOR=0.805 GT:AD:DP:GQ:PL 0/1:81,94:175:99:2412,0,1962 3 196388099 rs62623661 G C 1915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=-0.693;SOR=0.789 GT:AD:DP:GQ:PL 0/1:67,68:135:99:1944,0,1964 3 196547446 rs2084382 G C 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.396;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.81;ReadPosRankSum=-0.782;SOR=1.129 GT:AD:DP:GQ:PL 0/1:24,41:65:99:1056,0,514 3 196613075 rs34533379 C T 1828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.469;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.563;SOR=0.71 GT:AD:DP:GQ:PL 0/1:99,77:176:99:1857,0,2479 3 196657670 rs63736860 CT C 630.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=1.44;SOR=0.416 GT:AD:DP:GQ:PL 0/1:18,31:51:99:668,0,362 3 196674259 rs61179255 G A 3302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.458;SOR=0.794 GT:AD:DP:GQ:PL 0/1:126,133:259:99:3331,0,3232 3 196674749 rs4916589 C T 3152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=5.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=1.579;SOR=0.849 GT:AD:DP:GQ:PL 0/1:137,133:270:99:3181,0,3269 3 196674972 rs574365 C T 5182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.34;ReadPosRankSum=0.692;SOR=0.706 GT:AD:DP:GQ:PL 0/1:137,131:270:99:5211,0,6592 3 196674973 rs573708 T C 5182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.459;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=2.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.48;ReadPosRankSum=0.763;SOR=0.677 GT:AD:DP:GQ:PL 0/1:136,130:268:99:5211,0,6592 3 196730759 rs41292039 G A 1634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.149;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.693;SOR=0.659 GT:AD:DP:GQ:PL 0/1:63,69:132:99:1663,0,1530 3 196876600 rs73210523 G A 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.396;SOR=0.653 GT:AD:DP:GQ:PL 0/1:35,39:74:99:843,0,824 3 197483279 rs6794391 A G 2096.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2125,203,0 3 197495334 rs3205525 G A 2275.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2304,228,0 3 197496984 rs1708460 A G 1096.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.38;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1125,93,0 3 197557635 rs501101 C T 3426.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.86;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,123:125:99:3455,369,0 3 197566254 rs17850206 T C 1459.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1488,150,0 4 59350 rs6834707 A G 2255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.337;ClippingRankSum=0;DB;DP=953;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.37;ReadPosRankSum=0.22;SOR=0.688 GT:AD:DP:GQ:PL 0/1:777,174:951:99:2284,0,19323 4 59469 rs6834940 A G 2615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0;DB;DP=755;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.47;ReadPosRankSum=1.979;SOR=0.647 GT:AD:DP:GQ:PL 0/1:586,167:753:99:2644,0,15619 4 85995 rs61336127 C CA 6206.73 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.27;QD=42.22;SOR=1.5 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,147:147:99:1|1:85995_C_CA:6244,442,0 4 86016 rs57253237 G GC 7134.73 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.67;QD=47.25;SOR=2.136 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,151:151:99:1|1:85995_C_CA:7172,485,0 4 86022 rs74490941 C A 7486.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.98;QD=46.79;SOR=2.159 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,160:160:99:1|1:85995_C_CA:7515,503,0 4 86023 rs78362263 A T 7486.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.98;QD=46.79;SOR=2.215 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,160:160:99:1|1:85995_C_CA:7515,503,0 4 86024 rs77715101 G A 7351.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.92;QD=46.53;SOR=2.243 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,158:158:99:1|1:85995_C_CA:7380,494,0 4 86031 rs367720730 CA C 7837.73 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.38;QD=45.3;SOR=2.458 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,173:173:99:1|1:85995_C_CA:7875,527,0 4 86034 rs57594632 TC T 8017.73 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.35;QD=46.61;SOR=2.444 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,172:172:99:1|1:85995_C_CA:8055,539,0 4 86040 rs17853557 G T 8701.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.56;QD=48.34;SOR=2.225 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,180:180:99:1|1:85995_C_CA:8730,584,0 4 86042 rs17857099 A G 8611.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.71;QD=46.3;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,186:186:99:1|1:85995_C_CA:8640,578,0 4 86044 rs17857100 G A 10726.8 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.71;QD=56.76;SOR=2.341 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,189:189:99:1|1:85995_C_CA:10755,749,0 4 86101 rs58319295 G GC 15285.7 PASS AC=2;AF=1;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.71;QD=39.81;SOR=0.885 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,384:384:99:1|1:85995_C_CA:15323,1156,0 4 86738 rs2353625 A G 9488.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,287:287:99:9517,856,0 4 86798 rs3789149 C T 9790.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,313:313:99:9819,939,0 4 87113 rs2006748 T C 8856.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=31.63;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8885,840,0 4 87277 rs2006764 G C 7247.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=31.65;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7276,685,0 4 87313 rs60154095 G GA 7474.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.47;QD=37.94;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,197:199:99:7503,611,0 4 264941 rs11731285 A G 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.025;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=6.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.967;SOR=0.363 GT:AD:DP:GQ:PL 0/1:65,75:140:99:1817,0,1710 4 338112 . A T 500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0;DP=111;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.5;MQ=55.59;MQRankSum=-7.694;QD=4.86;ReadPosRankSum=-0.193;SOR=0.457 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,34:103:99:0|1:338100_ATT_A:529,0,2786 4 338113 . A T 500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.5;MQ=55.74;MQRankSum=-7.791;QD=4.77;ReadPosRankSum=0.079;SOR=0.47 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,34:105:99:0|1:338100_ATT_A:529,0,2786 4 338129 rs75245145 G A 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.5;MQ=55.55;MQRankSum=-7.972;QD=12.16;ReadPosRankSum=0.171;SOR=0.534 GT:AD:DP:GQ:PL 0/1:89,50:139:99:1719,0,2457 4 338156 rs79227679 T A 145.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.254;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=13.95;MLEAC=1;MLEAF=0.5;MQ=56.9;MQRankSum=-7.888;QD=1.05;ReadPosRankSum=-1.756;SOR=1.082 GT:AD:DP:GQ:PL 0/1:115,24:139:99:174,0,3059 4 338186 rs78725891 G T 298.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=22.796;MLEAC=1;MLEAF=0.5;MQ=57.35;MQRankSum=-5.844;QD=1.84;ReadPosRankSum=0.604;SOR=2.266 GT:AD:DP:GQ:PL 0/1:140,22:162:99:327,0,3667 4 338197 . T TGA 920.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.113;ClippingRankSum=0;DP=185;ExcessHet=3.0103;FS=17.15;MLEAC=1;MLEAF=0.5;MQ=57.57;MQRankSum=-5.891;QD=5.38;ReadPosRankSum=1.664;SOR=1.973 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,33:171:99:0|1:338197_T_TGA:958,0,5792 4 338200 . G C 980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.973;ClippingRankSum=0;DP=184;ExcessHet=3.0103;FS=16.773;MLEAC=1;MLEAF=0.5;MQ=57.58;MQRankSum=-6.853;QD=5.74;ReadPosRankSum=1.128;SOR=1.974 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,34:171:99:0|1:338197_T_TGA:1009,0,5714 4 338201 . ATC A 993.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.366;ClippingRankSum=0;DP=185;ExcessHet=3.0103;FS=16.633;MLEAC=1;MLEAF=0.5;MQ=57.59;MQRankSum=-6.877;QD=5.78;ReadPosRankSum=1.146;SOR=1.95 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,34:172:99:0|1:338197_T_TGA:1031,0,5711 4 338205 rs80052234 T C 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.101;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=16.687;MLEAC=1;MLEAF=0.5;MQ=57.56;MQRankSum=-7.075;QD=5.83;ReadPosRankSum=0.71;SOR=1.99 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,35:172:99:0|1:338197_T_TGA:1031,0,5711 4 436067 rs61793704 C A 3274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=0.882;SOR=0.676 GT:AD:DP:GQ:PL 0/1:113,126:239:99:3303,0,2994 4 437831 rs72501950 C T 3296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.498;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=1.341;SOR=0.831 GT:AD:DP:GQ:PL 0/1:116,128:244:99:3325,0,2883 4 648643 rs10902758 G A 839.77 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.99;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,30:30:90:868,90,0 4 663908 rs28675771 A G 3109.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=28.53;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3138,326,0 4 727695 rs73221126 A C 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.456;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=2.194;SOR=0.888 GT:AD:DP:GQ:PL 0/1:118,99:217:99:2286,0,2839 4 727939 rs73221127 C G 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.386;SOR=0.671 GT:AD:DP:GQ:PL 0/1:66,59:125:99:1607,0,1912 4 780286 rs10794536 C G 6518.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6547,624,0 4 786401 rs2306251 T C 1692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.749;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=1.236;SOR=0.727 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1721,0,1949 4 843695 rs8093 A G 4547.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4576,426,0 4 845772 rs10031922 T C 3863.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=1.903 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3892,360,0 4 858924 rs35227944 G A 2543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.047;QD=10.73;ReadPosRankSum=-1.207;SOR=0.683 GT:AD:DP:GQ:PL 0/1:123,114:237:99:2572,0,2959 4 858941 rs1026738 T C 8468.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=36.35;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,233:233:99:8497,709,0 4 860146 rs2306248 A G 4265.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4294,413,0 4 860192 rs1064207 A G 5710.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5739,561,0 4 946226 rs11552301 T C 2988.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3017,300,0 4 946974 rs2290405 G A 5708.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=1.411 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5737,548,0 4 960542 rs35117553 T G 2125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=1.403;SOR=0.669 GT:AD:DP:GQ:PL 0/1:58,92:150:99:2154,0,1357 4 961373 rs1377586 G A 5407.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.275 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5436,549,0 4 980896 rs11248061 C A 6308.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.19;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6337,588,0 4 980932 rs10902762 G A 6391.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6420,614,0 4 980971 rs10794537 T G 2673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.554;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.181;SOR=0.808 GT:AD:DP:GQ:PL 0/1:114,110:224:99:2702,0,2784 4 982852 rs3796621 G A 9080.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,290:290:99:9109,870,0 4 983060 rs3796622 T C 8286.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8315,760,0 4 983612 rs73219719 C T 3273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-2.411;SOR=0.781 GT:AD:DP:GQ:PL 0/1:170,141:311:99:3302,0,4446 4 983809 rs4690221 C T 8058.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,248:248:99:8087,743,0 4 1017903 . CGGGCGCTGGCGGGCGGGGGGTGCTGGTGGGCGG C 1523.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.2;MQRankSum=6.543;QD=19.79;ReadPosRankSum=0.87;SOR=0.785 GT:AD:DP:GQ:PL 0/1:32,45:77:99:1561,0,991 4 1018705 rs4647930 C A 2762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=1.064;SOR=0.694 GT:AD:DP:GQ:PL 0/1:100,115:215:99:2791,0,2458 4 1019054 rs145808953 CCA C 69.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=1.28;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=2.588;QD=0.22;ReadPosRankSum=-0.186;SOR=0.662 GT:AD:DP:GQ:PL 0/1:286,31:329:99:107,0,9625 4 1075271 rs2290407 C T 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.183;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.071;SOR=0.616 GT:AD:DP:GQ:PL 0/1:45,43:88:99:997,0,1202 4 1087265 rs1670534 T C 4537.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4566,450,0 4 1087327 rs138488801 G GCTGCCCAGGCTGGAGCCAGCC 7518.73 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=53.71;SOR=0.844 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,140:140:99:1|1:1087327_G_GCTGCCCAGGCTGGAGCCAGCC:7556,504,0 4 1087329 rs118112880 C T 7796.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=50.63;SOR=1.121 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,154:154:99:1|1:1087327_G_GCTGCCCAGGCTGGAGCCAGCC:7825,537,0 4 1087338 rs11725984 C T 7476.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.24;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,177:177:99:1|1:1087327_G_GCTGCCCAGGCTGGAGCCAGCC:7505,541,0 4 1090625 rs4045481 G A 1410.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.22;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1439,149,0 4 1164277 rs2279279 C G 3339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.034;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.076;SOR=0.75 GT:AD:DP:GQ:PL 0/1:132,142:274:99:3368,0,2987 4 1165130 rs11247975 G T 2953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=1.598;SOR=0.791 GT:AD:DP:GQ:PL 0/1:136,127:263:99:2982,0,3528 4 1165741 rs922697 A G 7756.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.63;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7785,673,0 4 1165764 rs11538062 C T 2233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-2.046;SOR=0.855 GT:AD:DP:GQ:PL 0/1:127,100:227:99:2262,0,3180 4 1165808 rs142113297 G A 3154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.11;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=3.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.549;SOR=0.887 GT:AD:DP:GQ:PL 0/1:131,142:273:99:3183,0,3034 4 1242682 . ACG A 140.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=1.477;QD=8.28;ReadPosRankSum=-0.406;SOR=0.551 GT:AD:DP:GQ:PL 0/1:11,6:17:99:178,0,371 4 1330759 rs1128427 T C 5640.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5669,546,0 4 1343405 rs2276903 T C 6767.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6796,660,0 4 1369885 rs11724369 G A 2361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.528;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.12;ReadPosRankSum=-0.372;SOR=0.761 GT:AD:DP:GQ:PL 0/1:165,126:291:99:2390,0,4120 4 1374695 rs28614045 C A 8244.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8273,821,0 4 1374774 rs28522910 C T 6999.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7028,728,0 4 1374789 rs28733902 A G 6700.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6729,672,0 4 1377615 rs9996817 A G 6109.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6138,606,0 4 1389101 rs71614971 A G 9373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.289;ClippingRankSum=0;DB;DP=632;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.11;MQRankSum=-1.56;QD=14.95;ReadPosRankSum=-1.826;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:301,326:627:99:0|1:1389101_A_G:9402,0,9630 4 1389148 rs79888804 T C 10370.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.497;ClippingRankSum=0;DB;DP=589;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.21;MQRankSum=-1.048;QD=17.79;ReadPosRankSum=1.957;SOR=0.716 GT:AD:DP:GQ:PL 0/1:299,284:583:99:10399,0,11428 4 1389156 rs71614972 T C 25523.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DB;DP=588;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.31;MQRankSum=4.601;QD=43.71;ReadPosRankSum=-0.356;SOR=0.257 GT:AD:DP:GQ:PL 1/1:1,583:584:99:25552,1730,0 4 1389161 rs71614973 A G 10599.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0;DB;DP=583;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.34;MQRankSum=1.67;QD=18.37;ReadPosRankSum=-0.621;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:285,292:577:99:0|1:1389101_A_G:10628,0,10809 4 1659128 rs56214302 T C 2039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.244;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.996;SOR=0.756 GT:AD:DP:GQ:PL 0/1:84,89:173:99:2068,0,1658 4 1701317 rs2247341 G A 786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.587;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=-1.339;SOR=0.627 GT:AD:DP:GQ:PL 0/1:59,35:94:99:815,0,1508 4 1719294 rs2236786 T C 4245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.428;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=0.127;SOR=0.574 GT:AD:DP:GQ:PL 0/1:152,170:322:99:4274,0,3499 4 1737502 rs11248073 C T 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.325;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.5;MQ=60.7;MQRankSum=2.873;QD=11.51;ReadPosRankSum=1.761;SOR=0.622 GT:AD:DP:GQ:PL 0/1:60,62:122:99:1432,0,1658 4 1746229 rs2290011 G T 846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.796;SOR=1.102 GT:AD:DP:GQ:PL 0/1:46,35:81:99:875,0,1234 4 1803704 rs2234909 T C 3744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.433;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-2.748;SOR=0.92 GT:AD:DP:GQ:PL 0/1:142,152:294:99:3773,0,3209 4 1807478 rs3135897 G T 2107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.084;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.82;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-2.083;SOR=0.859 GT:AD:DP:GQ:PL 0/1:94,89:183:99:2136,0,2470 4 1807894 rs7688609 G A 8293.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8322,863,0 4 1818594 rs9328763 C T 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.63 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3573,348,0 4 1843342 rs62623389 T C 3256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=7.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=0.297;SOR=0.916 GT:AD:DP:GQ:PL 0/1:103,131:234:99:3285,0,2422 4 1954945 rs489550 A G 6982.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7011,689,0 4 2044128 rs570712 C T 215.84 PASS AC=2;AF=1;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.97;SOR=3.912 GT:AD:DP:GQ:PL 1/1:0,6:6:18:244,18,0 4 2172456 rs34574483 T C 1489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.121;SOR=0.621 GT:AD:DP:GQ:PL 0/1:47,65:112:99:1518,0,1028 4 2275835 rs2051561 G A 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-1.419;SOR=0.712 GT:AD:DP:GQ:PL 0/1:107,105:212:99:2489,0,2671 4 2306053 rs661301 A G 3737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=3.225;SOR=0.684 GT:AD:DP:GQ:PL 0/1:162,159:321:99:3766,0,3913 4 2341194 rs2071680 T C 4898.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4927,486,0 4 2439900 rs7660914 C A 1188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.855;QD=13.51;ReadPosRankSum=1.273;SOR=0.768 GT:AD:DP:GQ:PL 0/1:36,52:88:99:1217,0,790 4 2451694 rs3108494 T C 2390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=-1.195;SOR=0.593 GT:AD:DP:GQ:PL 0/1:60,102:162:99:2419,0,1251 4 2453881 . C G 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DP=189;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-1.275;SOR=0.944 GT:AD:DP:GQ:PL 0/1:97,92:189:99:2393,0,2398 4 2460571 rs73205493 C T 2214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.733;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.009;SOR=0.628 GT:AD:DP:GQ:PL 0/1:118,94:212:99:2243,0,2894 4 2461888 rs3135152 A G 5668.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.86;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.07;ReadPosRankSum=1.337;SOR=0.812 GT:AD:DP:GQ:PL 1/1:2,193:195:99:5697,535,0 4 2464179 rs3135150 A G 2668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.981;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.273;SOR=0.948 GT:AD:DP:GQ:PL 0/1:120,103:223:99:2697,0,2683 4 2743999 rs232712 A G 2127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.407;SOR=0.589 GT:AD:DP:GQ:PL 0/1:89,86:175:99:2156,0,2366 4 2744087 rs2269495 G A 2187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-0.05;SOR=0.76 GT:AD:DP:GQ:PL 0/1:145,95:240:99:2216,0,3805 4 2822467 rs231402 G T 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-1.002;SOR=0.667 GT:AD:DP:GQ:PL 0/1:86,87:173:99:2065,0,2248 4 2826400 rs3213501 T C 4362.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4391,420,0 4 2831383 rs231399 T G 3309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.38;ReadPosRankSum=-0.258;SOR=0.66 GT:AD:DP:GQ:PL 0/1:80,122:202:99:3338,0,1993 4 2928413 rs4964 T C 3562.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3591,372,0 4 2933409 rs115593582 G A 1281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.413;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=4.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-0.374;SOR=1.055 GT:AD:DP:GQ:PL 0/1:59,53:112:99:1310,0,1787 4 2934308 rs1263349 G A 8729.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.86;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8758,822,0 4 2943361 rs1054090 T C 5330.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5359,543,0 4 2951804 rs2515960 A G 5846.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5875,569,0 4 2965857 rs79477485 C A 612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.939;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.144;QD=10.56;ReadPosRankSum=1.487;SOR=0.821 GT:AD:DP:GQ:PL 0/1:32,26:58:99:641,0,728 4 2990499 rs2960306 G T 1933.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.13;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1962,221,0 4 2993980 rs2515941 T C 1780.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1809,171,0 4 2994013 rs55646607 T C 468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.073;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.3;SOR=0.346 GT:AD:DP:GQ:PL 0/1:21,20:41:99:497,0,533 4 3005964 rs34857805 G A 300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.37;ReadPosRankSum=1.957;SOR=0.802 GT:AD:DP:GQ:PL 0/1:38,18:56:99:329,0,929 4 3006043 rs1024323 C T 1858.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1887,192,0 4 3015553 rs1140085 G A 1059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.21;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=2.359;SOR=0.676 GT:AD:DP:GQ:PL 0/1:72,50:122:99:1088,0,1847 4 3029623 rs7677445 A G 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.199;SOR=0.417 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1162,0,1303 4 3039150 rs1801058 T C 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.091;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=7.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.511;SOR=0.711 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1235,0,1222 4 3076603 rs71180116 CCAG C 731.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.188;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=5.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=2.989;SOR=0.521 GT:AD:DP:GQ:PL 0/1:29,30:59:99:769,0,1413 4 3076654 . G A 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=7.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.07;ReadPosRankSum=3.039;SOR=1.194 GT:AD:DP:GQ:PL 0/1:32,24:59:99:872,0,1392 4 3076659 . A C 936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=7.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.88;ReadPosRankSum=3.04;SOR=1.194 GT:AD:DP:GQ:PL 0/1:32,27:59:99:965,0,1013 4 3076662 rs61792465 A C 783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=7.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=2.703;SOR=1.456 GT:AD:DP:GQ:PL 0/1:35,24:59:99:812,0,1154 4 3076665 rs61792466 A C 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=9.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=3.083;SOR=1.352 GT:AD:DP:GQ:PL 0/1:32,24:58:99:885,0,1156 4 3076672 rs76533208 A G,ACCGCCGCCG 3759.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.788;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=80;ReadPosRankSum=2.403;SOR=0.693 GT:AD:DP:GQ:PL 1/2:2,27,18:48:99:3788,706,769,1300,0,1356 4 3117168 rs1936032 C G 477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.1;ReadPosRankSum=-0.138;SOR=1.202 GT:AD:DP:GQ:PL 0/1:38,21:59:99:506,0,1150 4 3162056 rs363099 C T 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=0.032;SOR=0.872 GT:AD:DP:GQ:PL 0/1:72,58:130:99:1276,0,1639 4 3180021 rs363096 T C 1948.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.03;SOR=1.773 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1977,177,0 4 3189547 rs363125 C A 972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.468;SOR=0.807 GT:AD:DP:GQ:PL 0/1:46,40:86:99:1001,0,1262 4 3213832 rs362336 G A 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.191;SOR=0.75 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1711,0,1815 4 3213875 rs362278 T C 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=1.578;SOR=0.51 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1150,0,1354 4 3215835 rs362331 T C 5154.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5183,510,0 4 3219613 rs2857790 A C 5664.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.389;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.04;ReadPosRankSum=-0.997;SOR=0.239 GT:AD:DP:GQ:PL 1/1:1,201:202:99:5693,595,0 4 3227419 rs362273 A G 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.869;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1.015;QD=12.44;ReadPosRankSum=-0.664;SOR=0.633 GT:AD:DP:GQ:PL 0/1:66,70:136:99:1720,0,1482 4 3234980 rs362272 G A 1822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.172;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.628;SOR=0.723 GT:AD:DP:GQ:PL 0/1:86,81:167:99:1851,0,2026 4 3240159 rs2071704 C T 2097.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2126,216,0 4 3240526 rs2858081 A G 2775.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.27;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2804,242,0 4 3257593 rs362287 C T 2733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.373;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=0.552;SOR=0.772 GT:AD:DP:GQ:PL 0/1:107,105:212:99:2762,0,2574 4 3318413 rs2236052 A G 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.766;SOR=0.723 GT:AD:DP:GQ:PL 0/1:112,78:190:99:1830,0,2881 4 3319271 rs10006362 C T 2597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=1.053;SOR=0.639 GT:AD:DP:GQ:PL 0/1:161,128:289:99:2626,0,3891 4 3417845 rs3213507 G C 6692.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6721,648,0 4 3444503 rs2073505 G A 1605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.888;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=1.926;SOR=1.138 GT:AD:DP:GQ:PL 0/1:64,59:123:99:1634,0,1601 4 3446132 rs1987546 C G 3131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.695;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=-0.376;SOR=0.698 GT:AD:DP:GQ:PL 0/1:99,115:214:99:3160,0,2344 4 3447034 rs34491545 G A 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.99;ReadPosRankSum=0.132;SOR=0.612 GT:AD:DP:GQ:PL 0/1:41,64:105:99:1707,0,1067 4 3449886 rs28468427 G A 2738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.264;SOR=0.649 GT:AD:DP:GQ:PL 0/1:97,108:205:99:2767,0,2428 4 3475252 rs4325970 T C 9449.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9478,942,0 4 3494600 rs6811423 A G 5307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.592;SOR=0.706 GT:AD:DP:GQ:PL 0/1:201,230:431:99:5336,0,4579 4 3494826 rs6811856 A C 7580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.095;ClippingRankSum=0;DB;DP=438;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.31;ReadPosRankSum=-2.916;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 0/1:235,203:438:99:0|1:3494826_A_C:7609,0,9644 4 3494847 rs6831659 G A 7621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0;DB;DP=446;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.13;ReadPosRankSum=-0.91;SOR=0.616 GT:AD:DP:GQ:PGT:PID:PL 0/1:237,208:445:99:0|1:3494826_A_C:7650,0,9651 4 3494898 rs6850908 C T 4471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.329;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.311;SOR=0.737 GT:AD:DP:GQ:PL 0/1:213,189:402:99:4500,0,5623 4 3519762 rs13325 A G 2668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.341;SOR=0.72 GT:AD:DP:GQ:PL 0/1:132,114:246:99:2697,0,3282 4 3520734 rs73197134 G A 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.977;QD=10.69;ReadPosRankSum=0.17;SOR=0.666 GT:AD:DP:GQ:PL 0/1:89,87:176:99:1910,0,2092 4 3526642 rs2228158 T C 2072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.922;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.817;SOR=0.526 GT:AD:DP:GQ:PL 0/1:86,86:172:99:2101,0,1903 4 3526786 rs1800485 C T 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.743;SOR=0.88 GT:AD:DP:GQ:PL 0/1:80,71:151:99:1643,0,1855 4 3769329 rs185354316 G A 833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=0.367;SOR=0.459 GT:AD:DP:GQ:PL 0/1:25,33:58:99:862,0,599 4 4190576 rs199742451 C G 45.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.664;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.15;MQRankSum=-12.569;QD=0.25;ReadPosRankSum=2.602;SOR=0.602 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,14:180:74:0|1:4190576_C_G:74,0,7662 4 4190577 rs200368405 G C 45.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.17;MQRankSum=-12.603;QD=0.25;ReadPosRankSum=2.603;SOR=0.614 GT:AD:DP:GQ:PGT:PID:PL 0/1:167,14:181:74:0|1:4190576_C_G:74,0,7662 4 4199634 rs2916414 A T 7596.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=29.79;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7625,765,0 4 4199760 rs17697262 G A 4611.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4640,477,0 4 4204299 rs2920182 T C 3634.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.12;QD=30.29;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3663,360,0 4 4249909 rs2272746 C T 2226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=6.121;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-1.985;SOR=1.133 GT:AD:DP:GQ:PL 0/1:123,89:212:99:2255,0,3272 4 4276132 rs7376390 T C 6937.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6966,704,0 4 4304337 rs2916382 C T 6417.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6446,612,0 4 4304522 rs2920217 A C 2855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.531;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.378;SOR=0.647 GT:AD:DP:GQ:PL 0/1:134,112:246:99:2884,0,3152 4 4436517 rs33952588 A T 676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=-0.86;QD=8.25;ReadPosRankSum=-1.968;SOR=0.558 GT:AD:DP:GQ:PL 0/1:46,36:82:99:705,0,1071 4 4440183 rs61740788 T G 924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.609;SOR=0.534 GT:AD:DP:GQ:PL 0/1:45,38:83:99:953,0,1211 4 4861974 rs34165410 C T 3406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.525;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=3.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=1.076;SOR=0.914 GT:AD:DP:GQ:PL 0/1:159,150:309:99:3435,0,4010 4 5018702 rs11724788 G A 2093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-0.863;SOR=0.693 GT:AD:DP:GQ:PL 0/1:118,88:206:99:2122,0,3062 4 5021149 rs35263598 G A 3152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.564;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=1.545;SOR=0.897 GT:AD:DP:GQ:PL 0/1:120,129:249:99:3181,0,2774 4 5469810 rs2301855 T C 2551.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.3;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2580,237,0 4 5577986 rs112554914 G A 2357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.557;SOR=0.6 GT:AD:DP:GQ:PL 0/1:101,100:201:99:2386,0,2535 4 5710189 rs6820907 G A 2618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.116;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.779;SOR=0.62 GT:AD:DP:GQ:PL 0/1:107,118:225:99:2647,0,2989 4 5743509 rs6446393 C T 1591.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.22;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,36:36:99:1|1:5743509_C_T:1620,108,0 4 5743512 rs6414624 T C 1591.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.22;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,36:36:99:1|1:5743509_C_T:1620,108,0 4 5746916 rs4689313 C T 2831.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.584 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2860,279,0 4 5747078 rs2286342 A G 2981.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=33.13;SOR=1.295 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3010,269,0 4 5749904 rs4688963 T C 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.414;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.192;SOR=0.623 GT:AD:DP:GQ:PL 0/1:76,58:134:99:1562,0,1854 4 5749961 rs4688962 G C 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=1.699;SOR=0.774 GT:AD:DP:GQ:PL 0/1:82,75:157:99:1763,0,2008 4 5750003 rs33929747 A G 1769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.445;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.941;SOR=0.543 GT:AD:DP:GQ:PL 0/1:70,79:149:99:1798,0,1382 4 5754544 rs899691 T C 1084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.338;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=3.448;SOR=0.951 GT:AD:DP:GQ:PL 0/1:60,43:103:99:1113,0,1502 4 5755542 rs2302075 C A 3419.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3448,354,0 4 5785442 rs1383180 G A 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-1.119;SOR=0.602 GT:AD:DP:GQ:PL 0/1:97,92:189:99:2177,0,2424 4 5803669 rs1031919 T C 4439.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=1.34 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4468,420,0 4 5812195 rs2279250 A G 2867.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2896,285,0 4 5812778 rs2291151 G A 2102.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2131,201,0 4 5830414 rs6818391 T C 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.079;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=6.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-1.17;SOR=1.263 GT:AD:DP:GQ:PL 0/1:90,60:150:99:1449,0,2220 4 5841232 rs200999477 G A 2838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=0.432;SOR=0.552 GT:AD:DP:GQ:PL 0/1:91,114:205:99:2867,0,2346 4 5975538 rs16837960 G A 1550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.406;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.111;SOR=0.781 GT:AD:DP:GQ:PL 0/1:68,64:132:99:1579,0,1667 4 5990599 rs751240 T C 7398.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7427,728,0 4 6087371 rs73196084 G A 928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.437;SOR=0.826 GT:AD:DP:GQ:PL 0/1:45,40:85:99:957,0,1133 4 6292909 rs9998519 C T 6803.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.47;SOR=1.641 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,153:153:99:1|1:6292909_C_T:6832,461,0 4 6292915 rs10010131 A G 6919.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=1.671 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,155:155:99:1|1:6292909_C_T:6948,470,0 4 6293696 rs1801213 C G 7650.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7679,776,0 4 6302519 rs1801212 G A 8996.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,296:296:99:9025,886,0 4 6302707 rs1801206 C T 8482.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8511,854,0 4 6302889 rs1801208 G A 3344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.623;SOR=0.657 GT:AD:DP:GQ:PL 0/1:159,139:298:99:3373,0,4109 4 6303022 rs1801214 C T 8635.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8664,843,0 4 6303354 rs734312 G A 4095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.61;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.266;SOR=0.668 GT:AD:DP:GQ:PL 0/1:172,174:346:99:4124,0,4700 4 6303955 rs1046314 G A 9677.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9706,954,0 4 6304087 rs1046316 A G 9933.77 PASS AC=2;AF=1;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,330:330:99:9962,989,0 4 6325018 rs3796402 A T 1987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.317;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.744;SOR=0.847 GT:AD:DP:GQ:PL 0/1:116,88:204:99:2016,0,2680 4 6325086 rs3796403 G A 3426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.42;SOR=0.792 GT:AD:DP:GQ:PL 0/1:138,141:279:99:3455,0,3370 4 6374230 rs35520578 C CA 5851.73 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=37.04;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5889,475,0 4 6377530 rs4688997 C G 3920.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.55;SOR=1.116 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,88:88:99:1|1:6377530_C_G:3949,265,0 4 6377534 rs4688998 A G 3945.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.33;SOR=1.08 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,89:89:99:1|1:6377530_C_G:3974,268,0 4 6596360 rs2301795 G A 7086.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7115,746,0 4 6612728 rs116495677 C T 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.89;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=1.059;SOR=0.613 GT:AD:DP:GQ:PL 0/1:90,86:176:99:1863,0,2248 4 6619165 rs4689489 A G 5186.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5215,504,0 4 6619204 rs4689490 G A 5469.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5498,552,0 4 6623032 rs4234768 G T 3914.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3943,433,0 4 6698667 rs11734898 T C 3670.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3699,381,0 4 6698706 rs11733989 A C 3495.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3524,356,0 4 6969163 rs62289166 A G 1662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.706;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=0.574;SOR=0.667 GT:AD:DP:GQ:PL 0/1:70,64:134:99:1691,0,1726 4 7044357 rs871133 A G 5617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.38;ReadPosRankSum=-0.108;SOR=0.539 GT:AD:DP:GQ:PGT:PID:PL 0/1:192,151:343:99:0|1:7044357_A_G:5646,0,7503 4 7044380 rs871134 C T 5606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.795;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=5.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.75;ReadPosRankSum=1.758;SOR=0.483 GT:AD:DP:GQ:PGT:PID:PL 0/1:218,162:380:99:0|1:7044357_A_G:5635,0,8826 4 7044384 . C A 5726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DP=383;ExcessHet=3.0103;FS=5.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.07;ReadPosRankSum=-1.835;SOR=0.939 GT:AD:DP:GQ:PL 0/1:162,218:380:99:5755,0,6168 4 7062895 rs141369619 G A 1341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.405;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.309;SOR=0.402 GT:AD:DP:GQ:PL 0/1:65,59:124:99:1370,0,1826 4 7435194 rs12498567 G A 2479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.385;SOR=0.549 GT:AD:DP:GQ:PL 0/1:141,107:248:99:2508,0,3576 4 7435379 rs4689746 A G 7232.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7261,695,0 4 7435901 rs56269914 C T 2839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.534;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=-1.172;SOR=0.754 GT:AD:DP:GQ:PL 0/1:100,108:208:99:2868,0,2898 4 7436486 rs11548325 C A 3059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.828;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.38;SOR=0.71 GT:AD:DP:GQ:PL 0/1:113,120:233:99:3088,0,3277 4 7655855 rs2285789 C T 1245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.05;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=0.88;SOR=1.043 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1274,0,977 4 7666180 rs35935435 C A 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-0.865;SOR=0.954 GT:AD:DP:GQ:PL 0/1:63,48:111:99:1076,0,1610 4 7666212 rs62290708 T C 1157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.84;ReadPosRankSum=2.092;SOR=0.298 GT:AD:DP:GQ:PL 0/1:33,45:78:99:1186,0,840 4 7691193 rs929264 G C 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.33;SOR=0.741 GT:AD:DP:GQ:PL 0/1:51,44:95:99:1084,0,1308 4 7714490 rs4689833 T C 5918.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5947,578,0 4 7716932 rs6816604 T C 7075.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7104,713,0 4 7717012 rs2285781 G A 3031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=1.903;SOR=0.851 GT:AD:DP:GQ:PL 0/1:140,128:268:99:3060,0,3497 4 7738775 rs75849760 G A 1992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=4.341;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=1.145;SOR=0.444 GT:AD:DP:GQ:PL 0/1:90,91:181:99:2021,0,2019 4 7770723 rs2285761 G T 2689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.005;SOR=0.637 GT:AD:DP:GQ:PL 0/1:120,116:236:99:2718,0,2830 4 7783163 rs28542374 G A 6982.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7011,706,0 4 7802227 rs28406288 G C 2526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.993;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=1.225;SOR=0.666 GT:AD:DP:GQ:PL 0/1:127,105:232:99:2555,0,3045 4 7845067 rs62289296 G A 2254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.74;ReadPosRankSum=-1.087;SOR=0.403 GT:AD:DP:GQ:PL 0/1:63,90:153:99:2283,0,1574 4 8009759 rs17180256 G A 8647.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8676,848,0 4 8031471 rs2385904 A G 7267.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7296,705,0 4 8062689 rs6811028 T C 5480.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.56;SOR=0.812 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,123:123:99:1|1:8062689_T_C:5509,379,0 4 8062690 rs10938683 G A 5480.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.85;SOR=0.81 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,125:125:99:1|1:8062689_T_C:5509,379,0 4 8217829 rs1712290 C A 5069.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=1.353 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5098,495,0 4 8228731 rs1281145 T C 5262.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.516 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5291,521,0 4 8228894 rs1292647 T C 5803.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5832,540,0 4 8228948 rs55642964 T C 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.941;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=7.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.203;SOR=0.362 GT:AD:DP:GQ:PL 0/1:91,86:177:99:2338,0,2346 4 8229218 rs1281146 A G 9784.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9813,948,0 4 8229326 rs1281147 T C 8801.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8830,864,0 4 8229713 rs1281148 A G 3552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.187;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.176;SOR=0.742 GT:AD:DP:GQ:PL 0/1:153,134:287:99:3581,0,4011 4 8229774 rs1281149 C T 8983.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9012,894,0 4 8229850 rs141246804 C T 4009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.205;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.479;SOR=0.784 GT:AD:DP:GQ:PL 0/1:146,159:305:99:4038,0,3701 4 8230070 rs1281150 T C 2818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-1.359;SOR=0.642 GT:AD:DP:GQ:PL 0/1:109,106:215:99:2847,0,2994 4 8230235 rs1281151 T C 7738.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7767,759,0 4 8238151 rs11603 C T 3370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.632;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.676;SOR=0.905 GT:AD:DP:GQ:PL 0/1:125,142:267:99:3399,0,2724 4 8242466 rs1281103 A G 8211.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8240,854,0 4 8582742 rs17844776 C T 4880.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.353 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4909,493,0 4 8582856 rs17844777 T G 6274.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.74;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,186:186:99:6303,559,0 4 8583312 rs17844778 A C 6028.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6057,588,0 4 8588950 rs61746144 C T 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.742;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.08;QD=6.82;ReadPosRankSum=-0.181;SOR=0.68 GT:AD:DP:GQ:PL 0/1:160,92:252:99:1747,0,3557 4 8594574 rs2302583 T C 6143.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6172,630,0 4 8602884 rs4301095 T C 7597.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7626,696,0 4 8602935 rs4431213 A G 8195.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,260:260:99:8224,780,0 4 8608634 rs2302580 C T 5160.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5189,510,0 4 8608979 rs2302578 G A 3298.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3327,309,0 4 8616070 rs2302571 T C 7331.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.98;SOR=0.808 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,163:163:99:1|1:8616054_C_T:7360,494,0 4 8616096 rs1131140 T C 7719.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.61;SOR=0.799 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,177:177:99:1|1:8616054_C_T:7748,536,0 4 8616179 rs7378066 T C 5353.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5382,525,0 4 8621194 rs28514374 A G 8176.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8205,835,0 4 8869587 rs13303225 T C 8099.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.92;ReadPosRankSum=-1.517;SOR=0.968 GT:AD:DP:GQ:PL 1/1:2,260:262:99:8128,690,0 4 9212403 rs368968666 C G 540.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.02;QD=23.51;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,23:23:69:569,69,0 4 9212484 rs370533531 T G 103.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=21.66;QD=20.78;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,5:5:15:132,15,0 4 9245671 . T C 440.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.785;ClippingRankSum=0;DP=242;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.5;MQ=33.23;MQRankSum=-1.506;QD=1.82;ReadPosRankSum=0.417;SOR=0.846 GT:AD:DP:GQ:PL 0/1:195,47:242:99:469,0,4465 4 9250422 rs376110430 T C 16745.8 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.719;ClippingRankSum=0;DB;DP=772;ExcessHet=3.0103;FS=2.088;MLEAC=2;MLEAF=1;MQ=30.81;MQRankSum=-4.132;QD=21.69;ReadPosRankSum=1.73;SOR=0.466 GT:AD:DP:GQ:PL 1/1:67,705:772:99:16774,402,0 4 9250456 . G A 614.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.967;ClippingRankSum=0;DP=350;ExcessHet=3.0103;FS=4.244;MLEAC=1;MLEAF=0.5;MQ=25.67;MQRankSum=0.368;QD=1.76;ReadPosRankSum=-0.369;SOR=1.345 GT:AD:DP:GQ:PGT:PID:PL 0/1:312,38:350:99:0|1:9250456_G_A:643,0,12593 4 9250459 . C G 676.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.051;ClippingRankSum=0;DP=316;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.53;MQRankSum=0.824;QD=2.14;ReadPosRankSum=-1.617;SOR=0.018 GT:AD:DP:GQ:PGT:PID:PL 0/1:279,37:316:99:0|1:9250456_G_A:705,0,11771 4 9270511 . A G 48.28 SNP_MQ_filter AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=20.67;QD=16.09;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:76,9,0 4 9446325 rs67703456 AG A 2105.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.15;ReadPosRankSum=-1.284;SOR=0.716 GT:AD:DP:GQ:PL 0/1:68,71:139:99:2143,0,2280 4 9784631 rs6283 C T 7727.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=33.17;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7756,699,0 4 9909923 rs2280205 G A 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=3.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=1.28;SOR=1.144 GT:AD:DP:GQ:PL 0/1:36,40:76:99:1005,0,868 4 9982330 rs13125646 A G 7019.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,225:225:99:7048,675,0 4 9998440 rs10939650 C T 2305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-1.033;SOR=0.63 GT:AD:DP:GQ:PL 0/1:94,99:193:99:2334,0,2152 4 9998493 rs13113918 A G 2207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.912;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.003;SOR=0.657 GT:AD:DP:GQ:PL 0/1:101,91:192:99:2236,0,2171 4 10027509 rs61256984 GA G 2158.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;MQRankSum=0.278;QD=22.03;ReadPosRankSum=-1.909;SOR=0.563 GT:AD:DP:GQ:PL 1/1:5,93:98:99:2196,154,0 4 10027542 rs6820230 C T 2893.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=27.04;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2922,319,0 4 10099340 rs13441 T C 6439.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=1.505 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6468,597,0 4 10445207 rs75487798 T C 2482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.797;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=-0.389;SOR=0.757 GT:AD:DP:GQ:PL 0/1:86,90:176:99:2511,0,2003 4 10446385 rs9291410 C T 4514.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4543,452,0 4 10446906 rs10016022 A G 5222.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5251,509,0 4 10502937 rs2903960 T G 4035.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4064,404,0 4 13383237 rs28406867 A G 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.738;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=0.96;SOR=0.459 GT:AD:DP:GQ:PL 0/1:23,31:54:99:819,0,520 4 13545792 rs9684692 G T 7835.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7864,756,0 4 13582739 rs16888852 A G 845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-2.224;SOR=0.882 GT:AD:DP:GQ:PL 0/1:60,42:102:99:874,0,1412 4 13606576 rs1971278 A T 2687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.364;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=1.941;SOR=0.543 GT:AD:DP:GQ:PL 0/1:101,109:210:99:2716,0,2323 4 13615293 rs2109917 C A 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.785;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.164;SOR=0.506 GT:AD:DP:GQ:PL 0/1:74,53:127:99:1222,0,1824 4 15004499 rs116150154 C T 2218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.307;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-1.735;SOR=0.811 GT:AD:DP:GQ:PL 0/1:88,95:183:99:2247,0,2476 4 15004655 rs7435318 G A 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=4.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=-0.22;SOR=0.442 GT:AD:DP:GQ:PL 0/1:109,73:182:99:1637,0,2809 4 15004876 rs146101385 G A 3440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.671;SOR=0.688 GT:AD:DP:GQ:PL 0/1:154,144:298:99:3469,0,3868 4 15482809 rs6810461 G A 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=6.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.407;SOR=0.289 GT:AD:DP:GQ:PL 0/1:42,51:93:99:1153,0,1089 4 15568992 rs13121363 T C 2155.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=1.194 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2184,227,0 4 15964485 rs758329 G A 7660.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7689,740,0 4 15964573 rs758328 A G 6815.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6844,660,0 4 15982163 rs34269395 A AG 950.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.3;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=1.659;QD=16.11;ReadPosRankSum=0.723;SOR=0.394 GT:AD:DP:GQ:PL 0/1:23,36:59:99:988,0,614 4 15985984 rs3815344 G C 1204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=0.448;SOR=0.763 GT:AD:DP:GQ:PL 0/1:76,57:133:99:1233,0,1727 4 16037352 rs2078622 C T 2493.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2522,267,0 4 17503382 rs2597775 C T 2205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-1.136;SOR=0.773 GT:AD:DP:GQ:PL 0/1:99,101:200:99:2234,0,2296 4 17517099 rs1551091 A G 6134.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6163,599,0 4 17586703 rs3733576 T C 1075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=-0.944;SOR=0.798 GT:AD:DP:GQ:PL 0/1:65,51:116:99:1104,0,1448 4 17634213 rs6825562 A G 3626.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3655,345,0 4 17694916 rs3822235 A G 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=-1.363;SOR=0.546 GT:AD:DP:GQ:PL 0/1:55,44:99:99:929,0,1342 4 17694943 rs3733579 A G 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.545;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=0.836;SOR=0.68 GT:AD:DP:GQ:PL 0/1:66,47:113:99:1026,0,1533 4 17711076 rs3733583 T C 3967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.987;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=4.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.207;SOR=0.605 GT:AD:DP:GQ:PL 0/1:161,158:319:99:3996,0,3842 4 17818885 rs2302212 T C 817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=5.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.14;ReadPosRankSum=1.673;SOR=0.246 GT:AD:DP:GQ:PL 0/1:23,31:54:99:846,0,627 4 17841465 rs2286537 A G 760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=4.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.478;SOR=0.316 GT:AD:DP:GQ:PL 0/1:43,33:76:99:789,0,1199 4 17875735 rs78581007 TCTC T 1675.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=3.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=0.868;SOR=0.429 GT:AD:DP:GQ:PL 0/1:69,46:115:99:1713,0,3344 4 20492417 rs7695303 G T 595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.072;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-0.748;SOR=1.03 GT:AD:DP:GQ:PL 0/1:35,27:62:99:624,0,812 4 20520993 rs519813 T C 1287.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1316,129,0 4 20533700 rs3215198 A AT 313.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.261;QD=7.47;ReadPosRankSum=1.245;SOR=0.74 GT:AD:DP:GQ:PL 0/1:25,17:42:99:351,0,524 4 20552510 rs17542486 A C 662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.141;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=6.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=0.028;SOR=1.034 GT:AD:DP:GQ:PL 0/1:19,28:47:99:691,0,376 4 20569254 rs12506323 A G 3500.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.22;SOR=0.995 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:20569254_A_G:3529,243,0 4 20709411 rs57364495 C T 345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.87;ReadPosRankSum=-1.107;SOR=0.856 GT:AD:DP:GQ:PL 0/1:22,17:39:99:374,0,489 4 20733708 rs111474115 C CA 756.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.257;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.55;ReadPosRankSum=0.653;SOR=1.165 GT:AD:DP:GQ:PL 0/1:21,31:52:99:794,0,437 4 20852166 rs3765121 A G 3680.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3709,377,0 4 20852244 rs3765122 A G 4697.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.84;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4726,524,0 4 21950259 rs6448102 A G 4587.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4616,447,0 4 22390167 rs9002 C T 2056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.681;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=1.765;SOR=0.771 GT:AD:DP:GQ:PL 0/1:83,89:172:99:2085,0,2158 4 22439914 rs6823735 A C 2760.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2789,260,0 4 22517355 rs186892593 G C 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.649;SOR=0.836 GT:AD:DP:GQ:PL 0/1:52,56:108:99:1138,0,1073 4 22749175 rs76988396 G A 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.311;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=7.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-1.162;SOR=0.922 GT:AD:DP:GQ:PL 0/1:101,84:185:99:2100,0,2445 4 22820504 rs358231 A T 5909.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.01;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5938,631,0 4 23815924 rs2970847 T C 2263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-1.219;SOR=0.719 GT:AD:DP:GQ:PL 0/1:98,93:191:99:2292,0,2554 4 23816242 rs11290186 TA T 370.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.41;ReadPosRankSum=0.579;SOR=0.648 GT:AD:DP:GQ:PL 0/1:27,23:65:99:408,0,487 4 24578097 rs6841898 C T 1790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.07;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=4.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-1.707;SOR=1.004 GT:AD:DP:GQ:PL 0/1:107,81:188:99:1819,0,2606 4 25005193 rs2232028 G A 1531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.863;SOR=0.67 GT:AD:DP:GQ:PL 0/1:83,66:149:99:1560,0,1957 4 25236017 rs313549 T C 6036.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,191:191:99:6065,573,0 4 25253995 rs313567 C T 1602.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1631,165,0 4 25363901 rs315675 T A 2348.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2377,251,0 4 25408516 rs3214034 T A 1062.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1091,108,0 4 25408838 rs34811474 G A 2175.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2204,228,0 4 25419283 rs9174 T C 5235.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5264,556,0 4 25678199 rs6448389 A G 5587.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5616,519,0 4 25767064 rs62411787 G A 476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.11;ReadPosRankSum=-1.902;SOR=0.739 GT:AD:DP:GQ:PL 0/1:53,25:78:99:505,0,1389 4 25769135 rs2290577 T C 1952.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1981,183,0 4 26387959 rs56122711 AT A 546.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.641;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0.744;QD=12.71;ReadPosRankSum=-0.778;SOR=0.555 GT:AD:DP:GQ:PL 0/1:14,29:43:99:584,0,257 4 26417136 rs2270226 T C 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.912;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.525;SOR=0.463 GT:AD:DP:GQ:PL 0/1:49,63:112:99:1515,0,1011 4 26426116 rs185171306 G A 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.097;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=0.313;SOR=0.85 GT:AD:DP:GQ:PL 0/1:40,35:75:99:935,0,1045 4 26585881 rs4692549 C T 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=1.568;SOR=0.527 GT:AD:DP:GQ:PL 0/1:86,86:172:99:1909,0,2173 4 26673761 rs9997999 T A 726.77 PASS AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,26:26:78:755,78,0 4 26673787 rs7691219 A G 881.77 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.93;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,34:34:99:910,101,0 4 26737063 rs33992685 C CT 1043.9 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=6.151;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=20.47;ReadPosRankSum=-0.037;SOR=0.164 GT:AD:DP:GQ:PL 1/1:7,44:57:14:1081,14,0 4 27004011 rs10028164 G A 2682.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=1.664 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2711,261,0 4 30725696 rs1047012 G A 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.164;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=11.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.183;SOR=0.745 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1301,0,1286 4 30725987 rs977931 G A 2540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=5.383;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=1.798;SOR=0.979 GT:AD:DP:GQ:PL 0/1:78,98:176:99:2569,0,1904 4 36081878 rs4833069 C T 2641.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2670,267,0 4 36130375 rs5857473 TA T 2155.73 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=32.66;SOR=1.284 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,66:66:99:1|1:36130375_TA_T:2193,201,0 4 36160340 rs1546495 G T 2234.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.35;SOR=2.07 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2263,201,0 4 36162273 rs11431961 C CA 2288.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.621;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.5;MQRankSum=0.448;QD=26.93;ReadPosRankSum=0.309;SOR=1.119 GT:AD:DP:GQ:PL 1/1:4,81:97:99:2317,194,0 4 36292018 rs1995319 T A 4138.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=1.204 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4167,411,0 4 36317970 rs9995922 T C 1977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.339;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-1.718;SOR=0.709 GT:AD:DP:GQ:PL 0/1:80,72:152:99:2006,0,2085 4 37432416 rs2973217 A C 2693.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.356 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2722,261,0 4 37445885 rs11724784 T C 2238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.841;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=1.361;SOR=0.713 GT:AD:DP:GQ:PL 0/1:85,88:173:99:2267,0,2122 4 37592044 rs62299700 T C 2183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.534;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=1.528;SOR=0.693 GT:AD:DP:GQ:PL 0/1:104,91:195:99:2212,0,2513 4 37903756 rs2279027 T C 2847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.22;SOR=0.574 GT:AD:DP:GQ:PL 0/1:109,123:232:99:2876,0,2396 4 37962186 rs6811863 G C 1815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-0.577;SOR=0.76 GT:AD:DP:GQ:PL 0/1:92,78:170:99:1844,0,2461 4 38016395 rs10501 T G 2402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.706;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.02;ReadPosRankSum=-2.24;SOR=1.101 GT:AD:DP:GQ:PL 0/1:67,83:150:99:2431,0,1710 4 38023302 rs34119528 C G 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.442;SOR=0.671 GT:AD:DP:GQ:PL 0/1:84,100:184:99:2338,0,1965 4 38138856 rs13110318 G A 2791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.433;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.874;SOR=0.644 GT:AD:DP:GQ:PL 0/1:123,115:238:99:2820,0,2965 4 38937372 rs2271031 T C 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.742;SOR=0.607 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1159,0,1065 4 38945169 rs1060582 A G 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.944;SOR=0.724 GT:AD:DP:GQ:PL 0/1:65,68:133:99:1474,0,1509 4 38987965 rs75988651 C T 411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.35;ReadPosRankSum=0.128;SOR=0.836 GT:AD:DP:GQ:PL 0/1:37,19:56:99:440,0,919 4 38995374 rs10212770 T C 3041.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3070,302,0 4 39064126 rs2711942 G C 1101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=-0.755;SOR=0.899 GT:AD:DP:GQ:PL 0/1:33,39:72:99:1130,0,1034 4 39064162 rs2711941 A C 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.335;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=-0.897;SOR=0.638 GT:AD:DP:GQ:PL 0/1:36,39:75:99:1129,0,991 4 39116775 rs10026775 A T 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=1.037;SOR=1.04 GT:AD:DP:GQ:PL 0/1:49,57:106:99:1398,0,1192 4 39116911 rs3733276 T C 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.58;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.441;SOR=0.679 GT:AD:DP:GQ:PL 0/1:69,83:152:99:1959,0,1761 4 39122697 rs3733275 C T 670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.889;SOR=0.732 GT:AD:DP:GQ:PL 0/1:25,31:56:99:699,0,558 4 39207318 rs17584431 A G 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.847;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=2.821;SOR=0.626 GT:AD:DP:GQ:PL 0/1:68,76:144:99:2007,0,1598 4 39216221 rs2167494 C T 1010.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.32;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1039,111,0 4 39226486 . AT A 335.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.9;ReadPosRankSum=0.159;SOR=0.532 GT:AD:DP:GQ:PL 0/1:58,28:102:99:373,0,1286 4 39259190 rs11096987 A G 3088.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3117,327,0 4 39448529 rs17618244 G A 1898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.493;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.145;SOR=0.853 GT:AD:DP:GQ:PL 0/1:88,72:160:99:1927,0,2169 4 39448542 rs7685429 C G 5387.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5416,513,0 4 39450229 rs4975017 C A 936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=4.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=-1.131;SOR=0.556 GT:AD:DP:GQ:PL 0/1:73,44:117:99:965,0,1807 4 39458051 rs2125313 A G 4012.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.76;QD=30.87;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4041,390,0 4 39460797 rs2687959 G A 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-1.292;SOR=0.622 GT:AD:DP:GQ:PL 0/1:79,62:141:99:1340,0,1872 4 39472842 rs2125314 T A 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.598;SOR=0.729 GT:AD:DP:GQ:PL 0/1:42,43:85:99:952,0,1044 4 39472946 rs67611743 CT C 473.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.599;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=1.684;SOR=0.386 GT:AD:DP:GQ:PL 0/1:26,27:62:99:511,0,407 4 39511530 rs71645104 T TA 788.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.92;ReadPosRankSum=-0.384;SOR=0.778 GT:AD:DP:GQ:PL 0/1:72,42:134:99:826,0,1403 4 39871086 rs77381988 T C 472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=6.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=2.068;SOR=0.18 GT:AD:DP:GQ:PL 0/1:24,22:46:99:501,0,575 4 39924372 rs373105119 T TA 130.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.167;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=10.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.26;ReadPosRankSum=-0.123;SOR=0.058 GT:AD:DP:GQ:PL 0/1:9,9:28:99:168,0,180 4 40103767 rs17511668 G T 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=6.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.846;SOR=0.26 GT:AD:DP:GQ:PL 0/1:36,41:77:99:997,0,929 4 40119501 rs1128372 T C 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.602;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=10.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=1.781;SOR=1.588 GT:AD:DP:GQ:PL 0/1:60,57:117:99:1476,0,1480 4 40121562 rs794001 G A 219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.415;SOR=1.112 GT:AD:DP:GQ:PL 0/1:10,10:20:99:248,0,222 4 40356422 rs10009228 A G 5016.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=1.215 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5045,473,0 4 40428010 rs278981 T C 7652.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7681,770,0 4 40438576 rs2307046 A G 1895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.563;SOR=0.663 GT:AD:DP:GQ:PL 0/1:91,81:172:99:1924,0,2136 4 40440215 rs2291580 T C 4295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.655;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=-2.486;SOR=0.826 GT:AD:DP:GQ:PL 0/1:122,157:279:99:4324,0,2876 4 40440854 rs1052153 G C 2852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.512;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.07;SOR=0.628 GT:AD:DP:GQ:PL 0/1:172,127:299:99:2881,0,4090 4 40778146 rs2465570 C T 1097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.355;SOR=0.613 GT:AD:DP:GQ:PL 0/1:48,50:98:99:1126,0,1152 4 40778162 rs2437323 T G 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.344;SOR=0.779 GT:AD:DP:GQ:PL 0/1:49,51:100:99:1228,0,1130 4 40810747 rs2261167 A G 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=1.06;SOR=0.716 GT:AD:DP:GQ:PL 0/1:107,91:198:99:2233,0,2815 4 41015823 rs2292234 G A 7777.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7806,809,0 4 41015899 rs4861358 C T 6755.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6784,648,0 4 41258978 rs9321 C T 3167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.586;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=6.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=-0.274;SOR=1.127 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,86:209:99:0|1:41258970_A_G:3196,0,6137 4 41615690 rs13146318 T A 3764.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.838;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.86;ReadPosRankSum=-0.557;SOR=0.693 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3793,356,0 4 41629036 rs5857808 G GGT,GGTGT 4624.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-2.364;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.35;MQRankSum=0;QD=36.42;ReadPosRankSum=-0.422;SOR=0.775 GT:AD:DP:GQ:PL 1/2:7,25,95:132:99:4662,2591,2405,460,0,461 4 41984118 rs2660320 C T 8558.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8587,861,0 4 41992677 rs2581434 C G 2200.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2229,219,0 4 42003671 rs1047626 A G 1999.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2028,201,0 4 42020142 rs2581423 A G 1635.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1664,156,0 4 42022464 rs15857 C A 1572.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1601,168,0 4 42400112 rs11733156 G T 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-0.681;SOR=0.548 GT:AD:DP:GQ:PL 0/1:96,82:178:99:1848,0,2397 4 42626659 rs11306052 GA G 697.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.516;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;MQRankSum=0.354;QD=20.52;ReadPosRankSum=1.08;SOR=1.371 GT:AD:DP:GQ:PL 1/1:2,32:38:60:735,60,0 4 42965159 rs10213360 A C 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.93;ReadPosRankSum=-1.538;SOR=0.823 GT:AD:DP:GQ:PL 0/1:76,49:125:99:1019,0,1833 4 44176960 rs13143747 T C 2277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.473;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.687;SOR=0.589 GT:AD:DP:GQ:PL 0/1:120,98:218:99:2306,0,2933 4 44682465 rs6447368 T C 1180.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1209,120,0 4 44696538 rs12641137 C G 997.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1026,107,0 4 46086060 rs976156 T C 1881.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1910,192,0 4 46994972 rs34464680 G GA 550.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=3.288;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.92;QD=8.88;ReadPosRankSum=0.408;SOR=0.404 GT:AD:DP:GQ:PL 0/1:31,31:70:99:588,0,610 4 46995366 rs2229940 G T 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.649;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=0.683;SOR=0.682 GT:AD:DP:GQ:PL 0/1:75,58:133:99:1145,0,1829 4 47033767 rs200686643 ATCTCGC A 1577.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=5.676;MLEAC=1;MLEAF=0.5;MQ=61.17;MQRankSum=1.813;QD=20.23;ReadPosRankSum=3.251;SOR=1.21 GT:AD:DP:GQ:PL 0/1:41,37:80:99:1615,0,2101 4 47322190 rs4482737 T C 2355.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2384,245,0 4 47408709 rs6289 A G 3694.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3723,378,0 4 47514685 rs33995001 C T 2316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.258;SOR=0.686 GT:AD:DP:GQ:PL 0/1:119,104:223:99:2345,0,2962 4 47525009 rs5858076 T A 2360.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.89;SOR=1.503 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2389,192,0 4 47525054 rs7683838 T C 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=0.345;SOR=0.822 GT:AD:DP:GQ:PL 0/1:41,58:99:99:1495,0,1035 4 47560002 rs34208443 C A 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.011;SOR=0.808 GT:AD:DP:GQ:PL 0/1:100,106:206:99:2715,0,2706 4 47578971 rs16851681 G A 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.844;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-2.148;SOR=0.868 GT:AD:DP:GQ:PL 0/1:56,72:128:99:1656,0,1458 4 47593283 rs4145944 G C 5024.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5053,468,0 4 47602375 rs13306282 A T 720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.51;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.362;SOR=0.863 GT:AD:DP:GQ:PL 0/1:37,32:69:99:749,0,977 4 47667064 rs11934749 T C 3425.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3454,342,0 4 47682174 rs10517195 A G 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-2.615;SOR=0.517 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1158,0,1108 4 47746602 rs372683178 TA T 162.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.098;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.54;ReadPosRankSum=0.56;SOR=0.641 GT:AD:DP:GQ:PL 0/1:83,23:127:99:200,0,2012 4 47839929 rs2289433 C T 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.863;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.13;SOR=0.588 GT:AD:DP:GQ:PL 0/1:61,48:109:99:1220,0,1863 4 47887536 rs2053404 T C 1097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.463;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=6.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-2.367;SOR=1.364 GT:AD:DP:GQ:PL 0/1:52,44:96:99:1126,0,1192 4 47887991 rs6818556 G A 1026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.898;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.85;ReadPosRankSum=-2.238;SOR=1.133 GT:AD:DP:GQ:PL 0/1:69,47:116:99:1055,0,1546 4 47901155 . CAAA C 1215.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.796;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=4.382;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=46.76;ReadPosRankSum=1.602;SOR=1.235 GT:AD:DP:GQ:PL 0/1:5,21:65:99:1165,0,121 4 47973110 rs7693648 G A 1396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.803;QD=13.97;ReadPosRankSum=-0.245;SOR=0.561 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,38:100:99:0|1:47973110_G_A:1425,0,2410 4 47973114 rs145846303 C T 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.96;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.824;QD=14.09;ReadPosRankSum=-0.706;SOR=0.513 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,38:97:99:0|1:47973110_G_A:1395,0,2413 4 47973119 . TA T 72.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0.519;QD=1.05;ReadPosRankSum=-0.328;SOR=0.914 GT:AD:DP:GQ:PL 0/1:56,13:69:99:110,0,1237 4 48037926 rs13116684 A G 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.242;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-0.56;SOR=0.927 GT:AD:DP:GQ:PL 0/1:58,36:94:99:935,0,1575 4 48147612 rs2661547 T G 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=1.596;SOR=0.526 GT:AD:DP:GQ:PL 0/1:51,74:125:99:1868,0,1273 4 48172266 rs2271173 G A 454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=2.365;SOR=0.417 GT:AD:DP:GQ:PL 0/1:34,23:57:99:483,0,910 4 48344154 rs28464394 G T 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.018;SOR=0.479 GT:AD:DP:GQ:PL 0/1:88,109:197:99:2711,0,2211 4 48492434 rs10008444 G C 11125.8 PASS AC=2;AF=1;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.25;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,345:345:99:11154,1035,0 4 48529683 rs58031023 TA T 1207.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.192;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.77;ReadPosRankSum=-0.852;SOR=1.516 GT:AD:DP:GQ:PL 0/1:12,60:85:68:1245,0,68 4 48577121 rs28558226 C T 2194.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2223,228,0 4 48588742 rs34558821 C T 1502.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.32;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1531,165,0 4 48625213 rs776579 C A 1282.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.314;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=1.713;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=20.36;ReadPosRankSum=0.609;SOR=1.238 GT:AD:DP:GQ:PGT:PID:PL 1/1:6,57:63:43:1|1:48625212_AC_A:1311,43,0 4 52752812 rs2271046 A T 3112.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.79;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3141,336,0 4 52943061 rs141695566 A G 3503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.308;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=-1.215;SOR=0.704 GT:AD:DP:GQ:PL 0/1:122,137:259:99:3532,0,2931 4 54310281 rs11723755 T G 1669.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1698,162,0 4 54327584 rs3765158 A G 2207.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2236,214,0 4 54373464 rs10021772 C T 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-0.844;SOR=0.75 GT:AD:DP:GQ:PL 0/1:65,54:119:99:1159,0,1642 4 54966667 rs3194383 C T 3118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.484;SOR=0.689 GT:AD:DP:GQ:PL 0/1:144,135:279:99:3147,0,3495 4 54966830 rs13144341 G A 5985.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6014,560,0 4 54966919 rs1132998 T C 1986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.279;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=0.834;SOR=0.818 GT:AD:DP:GQ:PL 0/1:83,69:152:99:2015,0,2040 4 55129831 rs55947416 C T 636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=0.904;SOR=0.812 GT:AD:DP:GQ:PL 0/1:40,29:69:99:665,0,1020 4 55141055 rs1873778 A G 2897.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2926,296,0 4 55161391 rs7685117 T C 4700.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4729,465,0 4 55602912 rs55817813 G A 970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.194;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=6.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=0.382;SOR=1.031 GT:AD:DP:GQ:PL 0/1:64,44:108:99:999,0,1483 4 55948108 rs2412617 A G 2014.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2043,207,0 4 55972974 rs1870377 T A 1748.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1777,168,0 4 55976947 rs5858314 T TA 601.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.147;SOR=0.953 GT:AD:DP:GQ:PL 0/1:27,32:65:99:639,0,498 4 55979558 rs2305948 C T 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=2.23;SOR=0.877 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1722,0,1573 4 56262374 rs1128141 A G 2056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.26;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=5.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.457;SOR=0.384 GT:AD:DP:GQ:PL 0/1:77,78:155:99:2085,0,2086 4 56291528 rs7660517 T C 676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.626;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=1.2;SOR=1.022 GT:AD:DP:GQ:PL 0/1:38,27:65:99:705,0,879 4 56301675 rs35793438 T G 1633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.733;SOR=0.622 GT:AD:DP:GQ:PL 0/1:72,69:141:99:1662,0,1778 4 56309992 rs3736544 A G 1485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.862;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.724;SOR=0.788 GT:AD:DP:GQ:PL 0/1:55,59:114:99:1514,0,1243 4 56310908 rs34812164 G A 2107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.878;SOR=0.606 GT:AD:DP:GQ:PL 0/1:79,93:172:99:2136,0,1793 4 56325365 rs34897046 G C 507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.279;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=0.225;SOR=0.58 GT:AD:DP:GQ:PL 0/1:33,22:55:99:536,0,867 4 56475338 rs3805383 G A 742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.504;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.545;SOR=0.765 GT:AD:DP:GQ:PL 0/1:34,33:67:99:771,0,759 4 56734701 rs3213948 C T 1305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=5.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-2.115;SOR=1.215 GT:AD:DP:GQ:PL 0/1:69,59:128:99:1334,0,1661 4 56756531 rs2290016 T C 908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=0.528;SOR=0.892 GT:AD:DP:GQ:PL 0/1:57,42:99:99:937,0,1436 4 57180473 rs6823339 C A 2965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.48;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=5.712;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.488;QD=11.23;ReadPosRankSum=1.422;SOR=0.955 GT:AD:DP:GQ:PL 0/1:138,126:264:99:2994,0,3277 4 57180576 rs138358443 C CGGAGCGGAGGGAGCGGAG 4148.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.313;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.625;QD=17.14;ReadPosRankSum=1.191;SOR=0.785 GT:AD:DP:GQ:PL 0/1:137,105:242:99:4186,0,8322 4 57180616 rs11723379 G C 3114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.223;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=3.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-2.19;SOR=0.874 GT:AD:DP:GQ:PL 0/1:150,128:278:99:3143,0,3415 4 57181632 rs7672073 G C 6784.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.4;ReadPosRankSum=-0.91;SOR=0.817 GT:AD:DP:GQ:PL 1/1:2,255:257:99:6813,708,0 4 57190356 rs7695701 G A 1917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=2.191;SOR=0.835 GT:AD:DP:GQ:PL 0/1:111,91:202:99:1946,0,2623 4 57204777 rs8340 A C 2729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.249;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.546;SOR=0.662 GT:AD:DP:GQ:PL 0/1:115,113:228:99:2758,0,2567 4 57211352 rs12498340 T C 1585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.798;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.91;SOR=0.642 GT:AD:DP:GQ:PL 0/1:90,65:155:99:1614,0,2056 4 57215677 rs3796544 G A 2611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.841;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.729;SOR=0.83 GT:AD:DP:GQ:PL 0/1:126,117:243:99:2640,0,3290 4 57219592 rs6554348 G A 3335.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.03;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3364,354,0 4 57219613 rs17086696 C T 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.484;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.745;SOR=0.519 GT:AD:DP:GQ:PL 0/1:64,61:125:99:1504,0,1473 4 57237683 rs6554354 G A 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.692;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.448;SOR=0.781 GT:AD:DP:GQ:PL 0/1:89,78:167:99:1846,0,2034 4 57269363 rs35136233 TA T 1651.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.22;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0;QD=18.15;ReadPosRankSum=1.129;SOR=0.637 GT:AD:DP:GQ:PL 0/1:36,55:91:99:1689,0,961 4 57269579 rs56066795 A T 490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.82;ReadPosRankSum=0.396;SOR=0.663 GT:AD:DP:GQ:PL 0/1:47,25:72:99:519,0,1237 4 57273840 rs11538098 C G 539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.452;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=6.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.58;ReadPosRankSum=-0.485;SOR=0.545 GT:AD:DP:GQ:PL 0/1:54,28:82:99:568,0,1299 4 57276739 rs2176785 G C 957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.094;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.51;ReadPosRankSum=0.889;SOR=0.91 GT:AD:DP:GQ:PL 0/1:26,40:66:99:986,0,560 4 57277065 rs71194104 TAAAAAA T 831.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.676;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=3.174;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0.392;QD=59.41;ReadPosRankSum=1.348;SOR=0.458 GT:AD:DP:GQ:PL 1/1:1,13:27:25:699,25,0 4 57333822 rs12513091 G T 3201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.379;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=2.131;SOR=0.424 GT:AD:DP:GQ:PL 0/1:99,135:234:99:3230,0,2579 4 57397050 rs28550555 A C 3333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.594;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.56;ReadPosRankSum=0.313;SOR=0.561 GT:AD:DP:GQ:PL 0/1:111,118:229:99:3362,0,2983 4 57397082 rs28470886 T C 3060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.235;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=2.619;SOR=0.537 GT:AD:DP:GQ:PL 0/1:158,124:282:99:3089,0,4058 4 57397196 rs28565512 C G 4062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.143;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.429;SOR=0.853 GT:AD:DP:GQ:PL 0/1:234,172:406:99:4091,0,5649 4 57797100 rs2227902 G T 7784.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7813,748,0 4 57797217 . GGAGCTGTCTCCTCCCATGGAGGTGGTCCAGAAGGAGCCTGTTCAGATA G 10643.7 PASS AC=2;AF=1;AN=2;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.6;QD=40.94;SOR=0.789 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,260:260:99:1|1:57797217_GGAGCTGTCTCCTCCCATGGAGGTGGTCCAGAAGGAGCCTGTTCAGATA_G:10681,824,0 4 57797308 rs2227903 A C 13234.8 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.63;QD=39.51;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,335:335:99:1|1:57797217_GGAGCTGTCTCCTCCCATGGAGGTGGTCCAGAAGGAGCCTGTTCAGATA_G:13263,1020,0 4 57843320 rs4865167 A G 7508.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.93;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7537,684,0 4 57887150 rs2271806 C T 1737.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1766,183,0 4 57889677 rs1056364 C T 3426.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3455,341,0 4 57898729 rs2271807 A G 1469.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.99;SOR=2.531 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1498,126,0 4 62598689 rs10434219 C T 4213.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4242,434,0 4 62599289 rs9312082 G A 1883.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1912,189,0 4 62775479 rs59884714 ATGTG A,ATG 3317.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=46.08;SOR=1.002 GT:AD:DP:GQ:PL 1/2:0,17,55:72:99:3355,1687,1459,552,0,294 4 62800554 rs2305339 G A 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.192;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=0.245;SOR=0.654 GT:AD:DP:GQ:PL 0/1:49,53:102:99:1144,0,1381 4 62800728 rs734644 T C 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.265;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.489;SOR=0.673 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1223,0,1306 4 62845388 rs1397547 G C 4948.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4977,518,0 4 62845490 rs1397548 A G 998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.13;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-1.019;SOR=0.833 GT:AD:DP:GQ:PL 0/1:50,44:94:99:1027,0,1205 4 66197804 rs7349683 C T 3568.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3597,357,0 4 68436883 rs13111555 T C 1557.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1586,162,0 4 68441091 rs2306810 T C 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.696;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-1.499;SOR=0.662 GT:AD:DP:GQ:PL 0/1:38,40:78:99:1056,0,877 4 68442968 rs11556614 A G 4078.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.13;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4107,432,0 4 68447040 rs11556615 C T 1459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.219;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.341;SOR=1.018 GT:AD:DP:GQ:PL 0/1:86,64:150:99:1488,0,1995 4 68447200 rs2242331 A G 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=6.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=0.13;SOR=0.354 GT:AD:DP:GQ:PL 0/1:67,78:145:99:2005,0,1568 4 68484770 rs138003529 T C 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.331;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.364;SOR=0.699 GT:AD:DP:GQ:PL 0/1:35,35:70:99:947,0,816 4 68492060 rs34742870 A G 636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.936;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=3.263;SOR=0.76 GT:AD:DP:GQ:PL 0/1:18,24:42:99:665,0,367 4 68497597 rs77075932 C A 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.235;SOR=0.777 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1077,0,1295 4 68500171 rs10008910 A G 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.687;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-0.827;SOR=0.822 GT:AD:DP:GQ:PL 0/1:47,35:82:99:807,0,1095 4 68534392 rs10010188 C T 709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.195;SOR=0.448 GT:AD:DP:GQ:PL 0/1:37,33:70:99:738,0,1016 4 68562365 rs17572160 A G 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.062;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=1.549;SOR=0.563 GT:AD:DP:GQ:PL 0/1:41,36:77:99:785,0,912 4 68619601 rs4986942 G A 1219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.696;SOR=0.44 GT:AD:DP:GQ:PL 0/1:53,53:106:99:1248,0,1414 4 68777054 rs12646286 C T 1019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-1.323;SOR=0.835 GT:AD:DP:GQ:PL 0/1:57,47:104:99:1048,0,1421 4 68780399 rs1371932 A G 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.152;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-0.478;SOR=0.629 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1286,0,1271 4 68784774 rs353163 T C 1896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.64;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=4.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.374;SOR=0.515 GT:AD:DP:GQ:PL 0/1:77,80:157:99:1925,0,1877 4 68812283 rs11930532 C T 4323.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4352,426,0 4 68919617 rs10018943 G A 3344.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3373,339,0 4 68995529 rs10030708 C T 729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=0.21;SOR=0.651 GT:AD:DP:GQ:PL 0/1:51,34:85:99:758,0,1221 4 69094507 rs2319797 T A 3116.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3145,312,0 4 69094575 rs2319796 T G 3166.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3195,316,0 4 69095197 rs12331141 T C 3077.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3106,287,0 4 69203551 rs10213623 A T 4785.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=30.48;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4814,470,0 4 69203634 rs370728191 TA T 416.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.023;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.615;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.133;QD=4.34;ReadPosRankSum=2.541;SOR=1.122 GT:AD:DP:GQ:PL 0/1:66,30:119:99:454,0,1532 4 69343287 rs976002 A G 1958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.566;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.052;SOR=0.791 GT:AD:DP:GQ:PL 0/1:92,76:168:99:1987,0,2207 4 69343353 rs1026341 A G 1178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.677;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.661;SOR=0.766 GT:AD:DP:GQ:PL 0/1:64,49:113:99:1207,0,1670 4 69416556 rs13102139 T C 2394.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.71;QD=34.21;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2423,210,0 4 69433714 rs34664906 C T 3576.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3605,345,0 4 69434217 rs28672900 G A 3845.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.26;QD=29.58;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3874,390,0 4 69512847 rs4148269 T G 4300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.504;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=5.264;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.32;QD=13.74;ReadPosRankSum=-0.079;SOR=0.469 GT:AD:DP:GQ:PL 0/1:146,167:313:99:4329,0,3546 4 69536084 rs1902023 A C 8144.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.807;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.71;MQRankSum=-0.54;QD=34.96;ReadPosRankSum=-0.706;SOR=0.57 GT:AD:DP:GQ:PL 1/1:1,232:233:99:8173,689,0 4 69681848 rs61749966 T C 2739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.844;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.768;QD=10.74;ReadPosRankSum=-0.261;SOR=0.843 GT:AD:DP:GQ:PL 0/1:144,111:255:99:2768,0,3459 4 69681936 rs61750900 G T 2341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=0.278;QD=10.89;ReadPosRankSum=1.482;SOR=0.76 GT:AD:DP:GQ:PL 0/1:116,99:215:99:2370,0,3080 4 69682471 rs294777 A G 3550.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.81;SOR=2.397 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3579,306,0 4 69687987 rs2942857 C A 9329.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.026;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.06;MQRankSum=-0.372;QD=29.06;ReadPosRankSum=-1.01;SOR=0.4 GT:AD:DP:GQ:PL 1/1:1,320:321:99:9358,950,0 4 69688125 rs146889061 G T 3562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.178;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.2;MQRankSum=-2.795;QD=10.45;ReadPosRankSum=-0.561;SOR=0.705 GT:AD:DP:GQ:PL 0/1:181,160:341:99:3591,0,4721 4 69795626 rs13128286 C T 6121.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6150,593,0 4 69962610 rs28365063 A G 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.685;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=7.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.266;SOR=1.097 GT:AD:DP:GQ:PL 0/1:74,55:129:99:1583,0,1979 4 69964337 rs7438284 A T 6217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.385;QD=19.93;ReadPosRankSum=1.937;SOR=0.613 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,159:312:99:0|1:69964337_A_T:6246,0,7419 4 69964338 rs7439366 T C 6217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.116;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.372;QD=19.74;ReadPosRankSum=1.558;SOR=0.622 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,162:315:99:0|1:69964337_A_T:6246,0,7419 4 69972949 rs4292394 C G 3376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.73;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-1.278;QD=13.35;ReadPosRankSum=-0.044;SOR=0.833 GT:AD:DP:GQ:PL 0/1:114,139:253:99:3405,0,2720 4 70079838 rs4694697 T C 3234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.803;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.5;MQ=58.94;MQRankSum=-0.286;QD=11.31;ReadPosRankSum=0.383;SOR=0.853 GT:AD:DP:GQ:PL 0/1:160,126:286:99:3263,0,3924 4 70146230 rs13139691 G A 8223.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.74;QD=30.46;SOR=1.239 GT:AD:DP:GQ:PL 1/1:0,270:270:99:8252,809,0 4 70146704 rs7689398 G A 2773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.497;QD=11.65;ReadPosRankSum=0.063;SOR=0.737 GT:AD:DP:GQ:PL 0/1:126,112:238:99:2802,0,3286 4 70146804 rs148987832 G C 3581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.638;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.5;MQ=59.19;MQRankSum=-4.293;QD=14.44;ReadPosRankSum=0.287;SOR=0.762 GT:AD:DP:GQ:PL 0/1:116,132:248:99:3610,0,2946 4 70156313 rs4235127 T A 3173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.32;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=9.855;MLEAC=1;MLEAF=0.5;MQ=54.62;MQRankSum=-9.894;QD=13.98;ReadPosRankSum=-1.182;SOR=1.295 GT:AD:DP:GQ:PL 0/1:115,112:227:99:3202,0,2923 4 70156392 rs10013145 A G 5243.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.065;ClippingRankSum=0;DB;DP=421;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=53.37;MQRankSum=-14.813;QD=12.46;ReadPosRankSum=1.598;SOR=0.655 GT:AD:DP:GQ:PL 0/1:219,202:421:99:5272,0,5037 4 70160277 rs6843900 T G 3901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.77;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=6.84;MLEAC=1;MLEAF=0.5;MQ=54.15;MQRankSum=7.564;QD=13.89;ReadPosRankSum=-2.66;SOR=1.073 GT:AD:DP:GQ:PL 0/1:134,147:281:99:3930,0,3176 4 70160309 rs6828191 C G 4589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.12;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=1.35;MLEAC=1;MLEAF=0.5;MQ=53.25;MQRankSum=10.008;QD=13.99;ReadPosRankSum=-1.846;SOR=0.8 GT:AD:DP:GQ:PL 0/1:145,183:328:99:4618,0,3593 4 70160338 rs72552703 G C 5735.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.178;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.5;MQ=52.65;MQRankSum=-12.856;QD=16.25;ReadPosRankSum=-2.232;SOR=0.769 GT:AD:DP:GQ:PL 0/1:200,153:353:99:5764,0,7885 4 70160342 rs72552704 T C 3840.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.719;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.5;MQ=52.69;MQRankSum=-12.718;QD=10.88;ReadPosRankSum=-2.929;SOR=0.755 GT:AD:DP:GQ:PGT:PID:PL 0/1:202,151:353:99:0|1:70160342_T_C:3869,0,8259 4 70160343 rs72552705 G C 3840.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.535;ClippingRankSum=0;DB;DP=361;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.5;MQ=52.8;MQRankSum=-12.896;QD=10.7;ReadPosRankSum=-2.537;SOR=0.724 GT:AD:DP:GQ:PGT:PID:PL 0/1:208,151:359:99:0|1:70160342_T_C:3869,0,8259 4 70346564 rs13142440 G T 16310.8 PASS AC=2;AF=1;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.56;SOR=1.381 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,366:366:99:1|1:70346564_G_T:16339,1101,0 4 70346565 rs13119049 A T 16310.8 PASS AC=2;AF=1;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.06;SOR=1.355 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,362:362:99:1|1:70346564_G_T:16339,1101,0 4 70355211 rs1845555 T C 8393.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.15;ReadPosRankSum=-0.622;SOR=0.237 GT:AD:DP:GQ:PL 1/1:1,287:288:99:8422,822,0 4 70513139 rs1347046 C T 5240.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5269,519,0 4 70592790 rs2292092 G T 2434.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2463,246,0 4 70807747 rs62305467 T C 1147.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1176,108,0 4 70807771 rs10030475 C T 1270.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1299,129,0 4 71024425 . CCCTGTTGCAGCTGAGCCTGCTGCAGAGGCACCTGTTGGAGCTGAGCCTGCTGCAGAGGCA C 2244.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.302;ClippingRankSum=0;DP=334;ExcessHet=3.0103;FS=4.932;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-2.562;QD=9.68;ReadPosRankSum=-2.729;SOR=1.054 GT:AD:DP:GQ:PL 0/1:159,73:232:99:2282,0,8085 4 71062256 rs3756132 C T 381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.7;ReadPosRankSum=0.136;SOR=0.395 GT:AD:DP:GQ:PL 0/1:38,19:57:99:410,0,1048 4 71062308 rs61747755 C A 483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.44;ReadPosRankSum=0.04;SOR=0.498 GT:AD:DP:GQ:PL 0/1:61,28:89:99:512,0,1518 4 71062426 rs17704351 C T 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=5.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.38;ReadPosRankSum=1.311;SOR=0.673 GT:AD:DP:GQ:PL 0/1:68,46:114:99:984,0,1865 4 71068489 rs3196714 T C 1482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.453;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.548;SOR=0.759 GT:AD:DP:GQ:PL 0/1:56,63:119:99:1511,0,1258 4 71201388 rs1351419 C T 6215.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6244,630,0 4 71201943 rs13039 A G 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=11.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=2.124;SOR=0.261 GT:AD:DP:GQ:PL 0/1:41,61:102:99:1575,0,1030 4 71232430 rs10024123 T C 7380.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7409,736,0 4 71232701 rs6853742 C T 5038.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=30.54;SOR=1.278 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5067,494,0 4 71255370 rs7674958 A T 3991.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=30.01;SOR=1.406 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4020,399,0 4 71347138 . CATCTTCCTCAGCTCCACCAGAGACCACAGCTGCCCCACCCACACCTTCTGCAACTACACCAGCTCCACT C 14355.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.802;ClippingRankSum=0;DP=703;ExcessHet=3.0103;FS=1.285;MLEAC=2;MLEAF=1;MQ=58.55;MQRankSum=1.154;QD=34.18;ReadPosRankSum=2.264;SOR=0.587 GT:AD:DP:GQ:PL 1/1:20,400:420:99:14393,651,0 4 71468345 rs368655454 CAGG C 1342.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.29;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.39;ReadPosRankSum=1.087;SOR=0.756 GT:AD:DP:GQ:PL 0/1:37,36:73:99:1380,0,1819 4 71469604 rs7439186 C T 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.227;SOR=0.839 GT:AD:DP:GQ:PL 0/1:67,70:137:99:1587,0,1662 4 71508137 rs201174697 A G 1921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.76;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.292;SOR=0.509 GT:AD:DP:GQ:PL 0/1:84,77:161:99:1950,0,2143 4 71510463 rs71599965 G A 1118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=2.43;SOR=0.789 GT:AD:DP:GQ:PL 0/1:59,49:108:99:1147,0,1479 4 71644171 rs16845439 G T 469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.214;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.633;SOR=0.711 GT:AD:DP:GQ:PL 0/1:17,22:39:99:498,0,351 4 71659634 rs59183938 T C 1790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.607;SOR=0.465 GT:AD:DP:GQ:PL 0/1:83,71:154:99:1819,0,2084 4 71698183 rs4694081 C A 895.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.942 GT:AD:DP:GQ:PL 1/1:0,29:29:87:924,87,0 4 71705262 rs6813092 A G 4578.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.47;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4607,423,0 4 72425863 rs1453458 C T 1980.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2009,192,0 4 72433545 rs1062677 A C 1082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.796;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.043;SOR=0.619 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1111,0,1044 4 72618296 rs9016 T C 2402.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2431,245,0 4 72618334 rs7041 A C 2490.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2519,258,0 4 73181564 rs74652320 G T 691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=4.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=0.084;SOR=1.022 GT:AD:DP:GQ:PL 0/1:38,34:72:99:720,0,931 4 73414286 rs788908 C T 2276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-2.187;SOR=0.852 GT:AD:DP:GQ:PL 0/1:103,96:199:99:2305,0,2565 4 73942678 rs2306058 C T 2195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.004;SOR=0.801 GT:AD:DP:GQ:PL 0/1:82,94:176:99:2224,0,1923 4 73991006 rs6822576 T C 2804.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2833,284,0 4 74285239 rs962004 C T 4824.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4853,506,0 4 74302071 rs3796678 T A 1534.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1563,156,0 4 74310844 rs2298839 A G 4985.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5014,498,0 4 74313169 rs7667494 T C 1913.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=1.066 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,67:67:99:1|1:74313154_T_C:1942,198,0 4 74318330 rs4235117 A G 3357.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3386,327,0 4 74367560 . C G 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0;DP=139;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.635;SOR=0.715 GT:AD:DP:GQ:PL 0/1:68,70:138:99:1693,0,1635 4 74464443 rs11368217 TA T 691.73 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.7;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,28:28:84:729,84,0 4 74735244 rs2071425 A G 6597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DB;DP=457;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.47;ReadPosRankSum=0.958;SOR=0.685 GT:AD:DP:GQ:PL 0/1:190,266:456:99:6626,0,4302 4 74863997 rs425535 T C 4719.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4748,444,0 4 74904296 rs182216932 G T 4640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.438;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.5;MQ=53.55;MQRankSum=0.117;QD=11.9;ReadPosRankSum=0.774;SOR=0.854 GT:AD:DP:GQ:PL 0/1:200,190:390:99:4669,0,5373 4 75248434 rs2367707 A G 3268.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3297,350,0 4 75482263 rs201229958 A G 583.77 PASS AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.12;QD=36.49;SOR=2.584 GT:AD:DP:GQ:PL 1/1:0,16:16:48:612,48,0 4 75858518 rs75120017 G C 370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.753;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=0.708;SOR=0.61 GT:AD:DP:GQ:PL 0/1:28,17:45:99:399,0,704 4 76489345 rs2306175 C T 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.633;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=1.007;QD=11.3;ReadPosRankSum=-0.119;SOR=0.922 GT:AD:DP:GQ:PL 0/1:69,68:137:99:1576,0,1459 4 76507094 . G C 811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.69;SOR=0.569 GT:AD:DP:GQ:PL 0/1:33,35:68:99:840,0,804 4 76793228 rs1394916 A G 4095.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4124,435,0 4 76794345 rs6858658 T G 5904.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5933,614,0 4 76804067 rs4859564 A G 4212.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4241,426,0 4 76805902 rs1976518 C T 4137.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4166,439,0 4 76809386 rs7691755 A G 2167.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2196,228,0 4 76811175 rs28436183 G T 2066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.634;SOR=0.541 GT:AD:DP:GQ:PL 0/1:107,94:201:99:2095,0,2628 4 76857309 rs4859571 C T 1676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.4;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-1.306;SOR=0.682 GT:AD:DP:GQ:PL 0/1:70,78:148:99:1705,0,1607 4 76857388 rs4859572 C T 2464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.925;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.12;ReadPosRankSum=0.371;SOR=0.982 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,66:136:99:0|1:76857388_C_T:2493,0,2987 4 76857395 rs4859573 A G 2384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.158;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.63;ReadPosRankSum=0.078;SOR=0.918 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,63:128:99:0|1:76857388_C_T:2413,0,2953 4 76861137 rs6847716 G C 6658.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6687,666,0 4 76878688 rs2242470 G A 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=-0.618;SOR=0.859 GT:AD:DP:GQ:PL 0/1:78,53:131:99:1136,0,2140 4 76878716 rs2242471 G C 2551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.759;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.37;ReadPosRankSum=1.224;SOR=0.504 GT:AD:DP:GQ:PL 0/1:69,97:166:99:2580,0,1542 4 76878982 rs2242474 T C 1425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.615;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-2.045;SOR=0.636 GT:AD:DP:GQ:PL 0/1:66,58:124:99:1454,0,1555 4 76956188 rs4241580 T C 1778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.041;QD=18.15;ReadPosRankSum=-0.431;SOR=0.889 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,48:98:99:0|1:76956179_G_A:1807,0,2713 4 76956289 rs5859488 C CAA 2004.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.53;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.018;QD=18.22;ReadPosRankSum=-1.104;SOR=0.715 GT:AD:DP:GQ:PL 0/1:55,55:110:99:2042,0,2149 4 77021433 rs6532189 C T 1174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.158;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-1.145;SOR=0.876 GT:AD:DP:GQ:PL 0/1:66,53:119:99:1203,0,1586 4 77033590 rs1128864 C T 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.955;SOR=0.654 GT:AD:DP:GQ:PL 0/1:95,100:195:99:2327,0,2239 4 77039352 rs13115827 A G 1236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=0.379;SOR=0.93 GT:AD:DP:GQ:PL 0/1:39,54:93:99:1265,0,834 4 77189984 rs1876538 T C 1448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.913;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=1.523;SOR=0.57 GT:AD:DP:GQ:PL 0/1:50,56:106:99:1477,0,1132 4 77192868 rs3733250 G A 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.376;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.231;SOR=0.612 GT:AD:DP:GQ:PL 0/1:140,140:280:99:3075,0,3511 4 77201487 rs1036788 C T 540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.15;ReadPosRankSum=0.74;SOR=0.569 GT:AD:DP:GQ:PL 0/1:58,30:88:99:569,0,1416 4 77290561 rs72657825 G A 1778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.329;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-1.416;SOR=0.561 GT:AD:DP:GQ:PL 0/1:71,77:148:99:1807,0,1900 4 77631425 rs3821979 T A 1945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-1.534;SOR=0.793 GT:AD:DP:GQ:PL 0/1:95,89:184:99:1974,0,2315 4 77660162 rs344140 G C 6645.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6674,630,0 4 77660731 rs344141 C G 3191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.63;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-1.551;SOR=0.61 GT:AD:DP:GQ:PL 0/1:113,131:244:99:3220,0,2726 4 77662248 rs344142 G A 3483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.23;SOR=0.656 GT:AD:DP:GQ:PL 0/1:151,144:295:99:3512,0,3863 4 77675505 rs3733242 C T 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-1.483;SOR=0.579 GT:AD:DP:GQ:PL 0/1:99,99:198:99:2346,0,2404 4 77969825 . GA G 71.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.898;QD=0.84;ReadPosRankSum=-1.574;SOR=0.765 GT:AD:DP:GQ:PL 0/1:70,15:90:99:109,0,1693 4 78669454 rs6855336 A G 1914.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.899 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,62:62:99:1|1:78669449_A_G:1943,186,0 4 78697552 rs34417165 T TA 1045.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;MQRankSum=0;QD=20.91;ReadPosRankSum=1.783;SOR=0.75 GT:AD:DP:GQ:PL 1/1:5,45:56:59:1083,59,0 4 78784013 rs28695846 C G 1477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.613;SOR=0.485 GT:AD:DP:GQ:PL 0/1:63,57:120:99:1506,0,1762 4 78815272 . CT C 37.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.14;ReadPosRankSum=-0.463;SOR=0.776 GT:AD:DP:GQ:PL 0/1:26,7:33:75:75,0,583 4 78870940 rs4859513 T A 472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.076;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=-0.936;SOR=0.665 GT:AD:DP:GQ:PL 0/1:15,18:33:99:501,0,366 4 78873629 rs17002849 G A 796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.178;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.371;SOR=0.466 GT:AD:DP:GQ:PL 0/1:29,34:63:99:825,0,681 4 78979257 rs71214392 C CGTGT 1263.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.243;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.5;MQ=60.6;MQRankSum=0;QD=15.6;ReadPosRankSum=2.626;SOR=0.512 GT:AD:DP:GQ:PL 0/1:41,40:100:99:1301,0,2009 4 78987157 rs4859905 A G 656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.282;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=1.755;SOR=0.582 GT:AD:DP:GQ:PL 0/1:45,29:74:99:685,0,1027 4 79186171 rs2867014 G A 1254.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1283,120,0 4 79238649 rs345514 T C 1837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-1.493;SOR=0.542 GT:AD:DP:GQ:PL 0/1:71,80:151:99:1866,0,1669 4 79284694 rs6835769 C T 1975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.424;SOR=1.19 GT:AD:DP:GQ:PL 0/1:74,81:155:99:2004,0,1873 4 79300899 rs35774552 T C 1295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.686;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.626;SOR=0.917 GT:AD:DP:GQ:PL 0/1:62,51:113:99:1324,0,1535 4 79300993 rs12512164 G A 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.718;SOR=0.685 GT:AD:DP:GQ:PL 0/1:93,78:171:99:1893,0,2401 4 79359885 rs2170899 T G 1064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.129;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.01;ReadPosRankSum=-1.733;SOR=0.491 GT:AD:DP:GQ:PL 0/1:18,38:56:99:1093,0,445 4 79372930 rs753752 C T 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.236;SOR=0.981 GT:AD:DP:GQ:PL 0/1:43,50:93:99:1159,0,990 4 79385719 rs6851427 G A 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.06;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=8.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=-0.124;SOR=0.508 GT:AD:DP:GQ:PL 0/1:88,59:147:99:1375,0,2069 4 79387464 rs7684722 A G 4619.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4648,485,0 4 79387586 rs34840208 A G 860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-1.063;SOR=0.595 GT:AD:DP:GQ:PL 0/1:50,38:88:99:889,0,1249 4 79391256 rs7664505 T C 2128.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.29;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2157,234,0 4 79400868 rs11098194 C T 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.02;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.45;SOR=0.711 GT:AD:DP:GQ:PL 0/1:65,46:111:99:1210,0,1677 4 79507411 rs71611026 T C 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-0.008;SOR=1.139 GT:AD:DP:GQ:PL 0/1:36,26:62:99:630,0,1001 4 79697892 rs371075171 AGGCTC A 2326.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.072;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.01;ReadPosRankSum=0.72;SOR=0.955 GT:AD:DP:GQ:PL 0/1:92,63:155:99:2364,0,6377 4 79832706 rs12507099 C G 2629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.5;QD=9.85;ReadPosRankSum=-1.309;SOR=0.753 GT:AD:DP:GQ:PL 0/1:156,111:267:99:2658,0,4180 4 79845007 rs13108247 C A 1885.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1914,195,0 4 80898808 rs35798108 C T 2037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.276;SOR=0.64 GT:AD:DP:GQ:PL 0/1:76,86:162:99:2066,0,1822 4 80905990 rs12647691 C G 3293.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.6;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3322,270,0 4 80905991 rs72653288 G T 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.109;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=-0.275;SOR=0.824 GT:AD:DP:GQ:PL 0/1:30,52:82:99:1223,0,780 4 81529518 rs2867782 T C 2753.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2782,285,0 4 81884722 rs1052325 G A 1245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.5;MQ=60.71;MQRankSum=-0.47;QD=13.69;ReadPosRankSum=1.017;SOR=0.444 GT:AD:DP:GQ:PL 0/1:37,54:91:99:1274,0,859 4 81967188 rs6831040 C T 5584.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5613,535,0 4 82013619 rs66740047 AAAGGAAGG A,AAAGGAAGGAAGGAAGG 1132.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.17;QD=40.45;SOR=1.382 GT:AD:DP:GQ:PL 1/2:0,21,7:28:99:1170,291,309,879,0,861 4 82366788 rs28560455 C T 553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=7.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=1.669;SOR=0.87 GT:AD:DP:GQ:PL 0/1:41,22:63:99:582,0,1163 4 82369205 rs1077803 T A 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.772;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.71;ReadPosRankSum=0.721;SOR=0.946 GT:AD:DP:GQ:PL 0/1:44,60:104:99:1558,0,976 4 83582064 rs3733228 G T 6179.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6208,617,0 4 83582211 rs3733227 C G 2648.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2677,249,0 4 83778839 rs7658703 T C 586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.671;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=-0.33;SOR=0.657 GT:AD:DP:GQ:PL 0/1:21,23:44:99:615,0,456 4 83788344 rs2045478 A T 3587.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.15 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3616,356,0 4 83792555 rs7686508 C A 1105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.293;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=5.223;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.65;SOR=1.242 GT:AD:DP:GQ:PL 0/1:62,45:107:99:1134,0,1485 4 83793243 rs4693525 A C 932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.643;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=5.928;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.139;QD=11.24;ReadPosRankSum=-0.165;SOR=1.402 GT:AD:DP:GQ:PL 0/1:46,37:83:99:961,0,1029 4 83838217 rs1031639 G A 5447.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5476,576,0 4 83839799 rs6535411 A G 4505.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.88;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4534,399,0 4 83900043 rs6535422 A G 2175.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.47;SOR=1.646 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2204,194,0 4 83989571 rs5859858 G GT 842.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.161;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.2;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.898;QD=12.21;ReadPosRankSum=0.808;SOR=1.091 GT:AD:DP:GQ:PL 0/1:31,38:72:99:880,0,567 4 84191031 rs6535454 A G 2122.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2151,198,0 4 84205872 rs6818847 C A 6695.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6724,659,0 4 84230619 rs11099592 T C 589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.626;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-1.353;SOR=0.682 GT:AD:DP:GQ:PL 0/1:24,26:50:99:618,0,538 4 84376743 rs6831595 A T 5645.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5674,543,0 4 84509465 rs11394944 T TG 5054.73 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=40.12;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,126:126:99:5092,382,0 4 87024409 rs28529458 T C 177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.44;ReadPosRankSum=-1.076;SOR=1.105 GT:AD:DP:GQ:PL 0/1:29,11:40:99:206,0,743 4 87684031 rs710832 A G 5799.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5828,591,0 4 87685796 rs10033029 T G 1149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.048;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-0.931;SOR=0.644 GT:AD:DP:GQ:PL 0/1:65,49:114:99:1178,0,1484 4 87692393 rs12500797 G A 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=5.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.895;SOR=1.039 GT:AD:DP:GQ:PL 0/1:122,105:227:99:2402,0,2952 4 87696470 rs12507034 A G 2104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.7;ReadPosRankSum=-0.787;SOR=0.859 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,57:126:99:0|1:87696470_A_G:2133,0,3868 4 87696476 rs12499471 G A 2079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.51;ReadPosRankSum=-0.673;SOR=0.922 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,56:126:99:0|1:87696470_A_G:2108,0,3900 4 87703430 rs9993838 A C 702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.078;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=0.708;SOR=0.606 GT:AD:DP:GQ:PL 0/1:58,34:92:99:731,0,1379 4 87706506 rs989902 T G 941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.062;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=0.865;SOR=0.874 GT:AD:DP:GQ:PL 0/1:57,43:100:99:970,0,1353 4 87706532 rs67067959 C T 890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.566;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.013;SOR=0.588 GT:AD:DP:GQ:PL 0/1:49,39:88:99:919,0,1061 4 87769929 rs13106574 T C 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.516;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-1.069;SOR=0.616 GT:AD:DP:GQ:PL 0/1:97,73:170:99:1808,0,2429 4 87809020 rs72613147 C G 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.091;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.359;SOR=0.891 GT:AD:DP:GQ:PL 0/1:72,63:135:99:1415,0,1776 4 87809387 rs1550931 G T 3363.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.03;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3392,360,0 4 88048863 rs62306540 T C 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=2.191;SOR=0.715 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1332,0,1415 4 88052219 rs342467 T C 1963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.814;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.867;SOR=0.954 GT:AD:DP:GQ:PL 0/1:99,85:184:99:1992,0,2219 4 88056719 rs56703224 GT G 1536.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.197;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-1.063;SOR=0.959 GT:AD:DP:GQ:PL 0/1:67,75:142:99:1574,0,1518 4 88226480 rs6850131 A C 687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.165;SOR=0.593 GT:AD:DP:GQ:PL 0/1:30,31:63:99:716,0,736 4 88258483 rs9991501 T C 1647.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1676,165,0 4 88293887 rs6531985 G A 709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.305;SOR=0.679 GT:AD:DP:GQ:PL 0/1:41,30:71:99:738,0,1094 4 88401616 rs9933 A G 3409.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3438,348,0 4 88415636 rs1049544 G C 1753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.847;SOR=0.75 GT:AD:DP:GQ:PL 0/1:87,75:162:99:1782,0,2378 4 88416188 rs13051 G T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.468;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=1.915;SOR=0.933 GT:AD:DP:GQ:PL 0/1:59,62:121:99:1473,0,1278 4 88416223 rs8342 A G 3675.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3704,392,0 4 88534235 rs2736982 A G 2463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-1.955;SOR=0.675 GT:AD:DP:GQ:PL 0/1:89,95:184:99:2492,0,2348 4 88535832 . A ATAGCAGTGACAGCAGCAG 8457.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.116;ClippingRankSum=0;DP=546;ExcessHet=3.0103;FS=3.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.58;ReadPosRankSum=-0.78;SOR=0.792 GT:AD:DP:GQ:PL 0/1:233,199:433:99:8495,0,13327 4 88536362 rs116385272 G A 11139.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.256;ClippingRankSum=0;DB;DP=875;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.455;QD=12.82;ReadPosRankSum=-0.274;SOR=0.713 GT:AD:DP:GQ:PL 0/1:423,446:869:99:11168,0,9556 4 88536457 rs199994008 T TAGTAGTGAC 16222.7 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0;DB;DP=817;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.56;ReadPosRankSum=1.069;SOR=0.847 GT:AD:DP:GQ:PL 0/1:383,406:789:99:16260,0,14302 4 88536520 rs115476207 T C 9364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.439;ClippingRankSum=0;DB;DP=863;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=1.295;QD=10.9;ReadPosRankSum=-0.374;SOR=0.588 GT:AD:DP:GQ:PL 0/1:468,391:859:99:9393,0,15323 4 88537420 rs112989710 C T 10747.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.268;ClippingRankSum=0;DB;DP=956;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-0.505;QD=11.31;ReadPosRankSum=-0.737;SOR=0.699 GT:AD:DP:GQ:PL 0/1:441,509:950:99:10776,0,10504 4 88537737 rs2615489 G A 3002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.27;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=6.255;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.295;SOR=1.059 GT:AD:DP:GQ:PL 0/1:120,126:246:99:3031,0,2971 4 88584148 rs2615498 C T 4869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.01;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.51;ReadPosRankSum=0.405;SOR=0.77 GT:AD:DP:GQ:PGT:PID:PL 0/1:162,133:295:99:0|1:88584148_C_T:4898,0,9095 4 88584160 rs2615497 G A 4686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.442;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.44;ReadPosRankSum=1.642;SOR=0.747 GT:AD:DP:GQ:PGT:PID:PL 0/1:161,124:285:99:0|1:88584148_C_T:4715,0,9121 4 88732531 rs4693878 T C 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=7.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.896;SOR=1.259 GT:AD:DP:GQ:PL 0/1:71,77:148:99:1902,0,1621 4 88732746 rs13144371 A G 4491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.695;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.6;ReadPosRankSum=-0.338;SOR=0.762 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,118:218:99:0|1:88732746_A_G:4520,0,4765 4 88732763 rs17013181 A G 4376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.331;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.99;ReadPosRankSum=0.847;SOR=0.636 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,114:219:99:0|1:88732746_A_G:4405,0,4832 4 89022362 rs2231153 C T 3309.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3338,351,0 4 89319296 rs17014118 T C 648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.37;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-1.026;SOR=0.833 GT:AD:DP:GQ:PL 0/1:22,27:49:99:677,0,548 4 89397091 rs7699006 A G 1226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.716;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=0.03;SOR=0.712 GT:AD:DP:GQ:PL 0/1:75,52:127:99:1255,0,1694 4 89415396 rs6857425 T C 3326.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3355,359,0 4 89421086 rs10516809 A G 598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.06;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.561;SOR=0.89 GT:AD:DP:GQ:PL 0/1:31,23:54:99:627,0,683 4 90034686 rs17015027 A G 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=0.304;SOR=0.673 GT:AD:DP:GQ:PL 0/1:52,56:108:99:1487,0,1453 4 90169925 rs7653897 A G 4822.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4851,459,0 4 90816294 rs1442138 A G 2844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=0.372;SOR=0.688 GT:AD:DP:GQ:PL 0/1:112,116:228:99:2873,0,2671 4 90857479 rs12646270 G A 1328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.614;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-0.977;SOR=0.906 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1357,0,1818 4 91230579 rs12647859 G A 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.51;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.336;SOR=0.791 GT:AD:DP:GQ:PL 0/1:81,80:161:99:1856,0,1998 4 91549156 rs11303496 CT C 751.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.09;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.937;QD=10.02;ReadPosRankSum=-0.57;SOR=0.785 GT:AD:DP:GQ:PL 0/1:34,41:75:99:789,0,679 4 94316763 rs1385405 T G 860.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,31:31:93:889,93,0 4 94344042 rs10034345 G A 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=5.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=0.377;SOR=0.775 GT:AD:DP:GQ:PL 0/1:35,50:85:99:1220,0,802 4 94750058 rs10009502 C G 2216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-1.154;SOR=0.909 GT:AD:DP:GQ:PL 0/1:80,85:165:99:2245,0,2073 4 95170839 rs11722476 G A 2054.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2083,222,0 4 95173779 rs7439869 T C 2371.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=1.704 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2400,228,0 4 95186055 rs2306802 A G 2999.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.099 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3028,290,0 4 95197520 rs6823404 C T 4334.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4363,441,0 4 95503902 rs5013417 T C 977.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1006,99,0 4 95531417 rs10017461 A G 2417.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2446,243,0 4 95539267 rs966845 G A 4900.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.69;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4929,529,0 4 95561459 rs7690296 A G 2085.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2114,198,0 4 95578588 rs13107595 G A 1987.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2016,209,0 4 96106322 rs2289043 A G 5830.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,206:206:99:5859,617,0 4 96123981 rs3733212 C T 2446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.318;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=1.45;SOR=0.739 GT:AD:DP:GQ:PL 0/1:131,109:240:99:2475,0,2988 4 96127869 rs2276322 T G 3356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.858;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.755;SOR=0.843 GT:AD:DP:GQ:PL 0/1:172,155:327:99:3385,0,3752 4 96256616 rs4699423 A G 2646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.889;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.022;SOR=0.577 GT:AD:DP:GQ:PL 0/1:113,116:229:99:2675,0,2479 4 96256673 rs1843018 G A 2211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.091;SOR=0.684 GT:AD:DP:GQ:PL 0/1:113,97:210:99:2240,0,2552 4 98893437 rs783960 A G 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=5.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.017;SOR=0.357 GT:AD:DP:GQ:PL 0/1:46,52:98:99:1216,0,1128 4 98893476 rs783959 C T 1085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=1.655;SOR=0.565 GT:AD:DP:GQ:PL 0/1:56,50:106:99:1114,0,1331 4 99027137 rs2865979 T C 958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.12;ReadPosRankSum=0.013;SOR=0.693 GT:AD:DP:GQ:PL 0/1:18,38:56:99:987,0,356 4 99027184 rs2903150 T C 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.46;ReadPosRankSum=2.469;SOR=0.613 GT:AD:DP:GQ:PL 0/1:14,36:50:99:901,0,289 4 99027218 rs2903151 T C 841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.76;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.15;ReadPosRankSum=-0.728;SOR=0.793 GT:AD:DP:GQ:PL 0/1:6,32:38:94:870,0,94 4 99049593 rs17558193 A G 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=1.701;SOR=0.892 GT:AD:DP:GQ:PL 0/1:52,53:105:99:1307,0,1354 4 99055480 rs13328005 T C 509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.64;ReadPosRankSum=-0.138;SOR=1.072 GT:AD:DP:GQ:PL 0/1:36,23:59:99:538,0,888 4 99802300 . G GA 30.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=0.65;ReadPosRankSum=-0.124;SOR=0.423 GT:AD:DP:GQ:PL 0/1:39,8:49:68:68,0,824 4 99808254 rs62323192 G A 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=59.39;MQRankSum=0.178;QD=9.92;ReadPosRankSum=-0.269;SOR=0.637 GT:AD:DP:GQ:PL 0/1:100,88:188:99:1893,0,2161 4 99850126 rs11723037 A G 6054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.73;ClippingRankSum=0;DB;DP=488;ExcessHet=3.0103;FS=4.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.017;SOR=0.946 GT:AD:DP:GQ:PL 0/1:246,239:485:99:6083,0,5826 4 99993833 rs28730643 A G 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.731;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.334;SOR=0.861 GT:AD:DP:GQ:PL 0/1:62,49:111:99:1145,0,1468 4 100045574 rs1042364 T C 729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.58;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=0.436;SOR=0.866 GT:AD:DP:GQ:PL 0/1:37,36:73:99:758,0,824 4 100045616 rs1126673 C T 760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.173;SOR=0.481 GT:AD:DP:GQ:PL 0/1:34,36:70:99:789,0,758 4 100047812 rs1126672 G A 2171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.502;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=-0.474;SOR=0.667 GT:AD:DP:GQ:PL 0/1:66,91:157:99:2200,0,1338 4 100048414 rs1126671 T C 858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.986;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.18;ReadPosRankSum=-0.157;SOR=0.931 GT:AD:DP:GQ:PL 0/1:67,38:105:99:887,0,1635 4 100048506 rs6836440 G A 3164.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.13;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3193,250,0 4 100048509 rs6813415 T C 1098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-0.981;SOR=0.462 GT:AD:DP:GQ:PL 0/1:37,43:80:99:1127,0,945 4 100052733 rs1126670 C A 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.514;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=7.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=1.038;SOR=1.155 GT:AD:DP:GQ:PL 0/1:100,73:173:99:1799,0,2562 4 100052818 rs142365973 C A 2271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.922;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=11.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.439;SOR=1.303 GT:AD:DP:GQ:PL 0/1:105,96:201:99:2300,0,2376 4 100057858 rs70955972 T TA 316.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.67;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.12;QD=9.32;ReadPosRankSum=-0.57;SOR=0.77 GT:AD:DP:GQ:PL 0/1:18,16:34:99:354,0,368 4 100062675 rs13138294 T G 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=2.594;SOR=0.551 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1480,0,1530 4 100062819 rs2032349 A G 3800.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3829,381,0 4 100140306 rs4699735 A T 2939.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2968,306,0 4 100235043 rs78574385 G A 4649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=12.405;MLEAC=1;MLEAF=0.5;MQ=47.68;MQRankSum=-6.066;QD=11.68;ReadPosRankSum=0.102;SOR=0.673 GT:AD:DP:GQ:PL 0/1:193,205:398:99:4678,0,4710 4 100235053 rs1789882 A G 14975.8 PASS AC=2;AF=1;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.13;QD=36.8;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,407:407:99:15004,1228,0 4 100235140 rs2018417 C A 4042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.784;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=11.994;MLEAC=1;MLEAF=0.5;MQ=51.41;MQRankSum=-6.457;QD=10.45;ReadPosRankSum=1.582;SOR=1.151 GT:AD:DP:GQ:PL 0/1:216,171:387:99:4071,0,5319 4 100237220 rs149912181 C T 3748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=2.29;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.505;QD=10.83;ReadPosRankSum=-0.493;SOR=0.711 GT:AD:DP:GQ:PL 0/1:184,162:346:99:3777,0,4336 4 100239319 rs1229984 T C 7189.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7218,749,0 4 100268190 rs283413 A C 8028.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=30.64;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8057,785,0 4 100356179 rs1154469 C T 1035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=0.09;SOR=0.375 GT:AD:DP:GQ:PL 0/1:49,45:94:99:1064,0,1146 4 100443720 rs13143848 G A 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.561;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.87;ReadPosRankSum=0.268;SOR=0.628 GT:AD:DP:GQ:PL 0/1:87,62:149:99:1350,0,1937 4 100443782 rs13119384 T C 2903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.017;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.69;ReadPosRankSum=-0.043;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,75:174:99:0|1:100443782_T_C:2932,0,4474 4 100443784 rs61732380 C G 2933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.16;ReadPosRankSum=-0.406;SOR=0.849 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,77:171:99:0|1:100443782_T_C:2962,0,4530 4 100443800 rs17029087 G A 2863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.36;ReadPosRankSum=-0.608;SOR=0.809 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,78:175:99:0|1:100443782_T_C:2892,0,4345 4 100451127 rs45440196 G A 530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.213;SOR=0.782 GT:AD:DP:GQ:PL 0/1:32,21:53:99:559,0,863 4 100485244 rs11944749 G C 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=0.634;SOR=0.851 GT:AD:DP:GQ:PL 0/1:80,51:131:99:1136,0,2084 4 100485255 rs11944752 G A 1263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=4.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=-0.697;SOR=1.025 GT:AD:DP:GQ:PL 0/1:85,58:143:99:1292,0,2286 4 100504664 rs3816873 T C 1961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=2.437;SOR=0.457 GT:AD:DP:GQ:PL 0/1:59,81:140:99:1990,0,1455 4 100784980 rs3737484 C T 436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.516;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=5.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.66;ReadPosRankSum=0.597;SOR=0.797 GT:AD:DP:GQ:PL 0/1:36,21:57:99:465,0,807 4 100805207 rs6532835 C A 2020.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.94;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2049,223,0 4 101109161 rs3749604 G C 2434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.86;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.451;SOR=0.95 GT:AD:DP:GQ:PL 0/1:115,98:213:99:2463,0,2831 4 102751076 rs10516487 G A 3645.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3674,357,0 4 102751276 rs10516486 C T 3803.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=31.7;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3832,360,0 4 102839287 rs3733197 G A 3923.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.63;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3952,425,0 4 102839351 . G GT 32.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.867;ClippingRankSum=0;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.41;ReadPosRankSum=-0.226;SOR=0.823 GT:AD:DP:GQ:PL 0/1:70,10:83:70:70,0,1467 4 102839362 rs3733198 A T 2029.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.678;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.46;ReadPosRankSum=-0.06;SOR=0.298 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2058,199,0 4 102942765 rs139919861 T TTA 238.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.534;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=6.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-1.376;SOR=2.064 GT:AD:DP:GQ:PL 0/1:13,9:22:99:276,0,432 4 102965043 rs3113676 T C 2102.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.96;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2131,233,0 4 103514658 rs1609993 T C 5261.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5290,559,0 4 103553447 rs5860729 GA G 592.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.135;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=7.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.51;ReadPosRankSum=-1.308;SOR=1.445 GT:AD:DP:GQ:PL 0/1:54,37:95:99:630,0,1243 4 103555992 rs2272697 A G 2970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=-0.171;SOR=0.741 GT:AD:DP:GQ:PL 0/1:91,116:207:99:2999,0,2202 4 103557077 rs2866413 G A 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.255;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.572;SOR=0.659 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1528,0,1414 4 103611845 rs227368 C T 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=0.46;SOR=0.645 GT:AD:DP:GQ:PL 0/1:55,70:125:99:1813,0,1330 4 103822404 rs58374767 G A 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.046;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=45.87;MQRankSum=-9.483;QD=4.61;ReadPosRankSum=4.652;SOR=0.64 GT:AD:DP:GQ:PL 0/1:161,71:234:99:1097,0,4305 4 103822492 rs3974500 G A 708.77 SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.911;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=54.856;MLEAC=1;MLEAF=0.5;MQ=54.18;MQRankSum=-11.092;QD=5.25;ReadPosRankSum=-1.819;SOR=6.122 GT:AD:DP:GQ:PL 0/1:101,34:135:99:737,0,2997 4 103826757 . T C 315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.42;MQRankSum=-6.85;QD=2.32;ReadPosRankSum=1.641;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:120,16:136:99:0|1:103826757_T_C:344,0,11388 4 103826769 rs200075071 G A 333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.5;MQRankSum=-7.118;QD=2.51;ReadPosRankSum=1.326;SOR=0.731 GT:AD:DP:GQ:PGT:PID:PL 0/1:116,17:133:99:0|1:103826757_T_C:362,0,11466 4 103826788 rs201197585 T G 291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.19;MQRankSum=-7.078;QD=2.21;ReadPosRankSum=1.111;SOR=0.784 GT:AD:DP:GQ:PGT:PID:PL 0/1:116,16:132:99:0|1:103826757_T_C:320,0,11457 4 103826813 . A G 255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.454;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=2.5;MLEAC=1;MLEAF=0.5;MQ=54.68;MQRankSum=-6.621;QD=2.28;ReadPosRankSum=-0.131;SOR=1.054 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,13:112:99:0|1:103826757_T_C:284,0,9896 4 103911069 rs2715591 C A 2967.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2996,290,0 4 104117354 rs146757212 T C 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.497;SOR=0.643 GT:AD:DP:GQ:PL 0/1:44,45:89:99:1119,0,1117 4 106196951 rs2454206 A G 2238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.52;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=0.088;SOR=0.849 GT:AD:DP:GQ:PL 0/1:80,91:171:99:2267,0,2020 4 106317429 rs13787 C G 659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.446;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=10.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.42;SOR=1.512 GT:AD:DP:GQ:PL 0/1:24,25:49:99:688,0,638 4 106317498 rs34331553 CCAAA C 1076.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.53;ReadPosRankSum=0.325;SOR=0.758 GT:AD:DP:GQ:PL 0/1:21,29:50:99:1114,0,810 4 106359209 rs2713862 T A 353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.53;ReadPosRankSum=0.327;SOR=0.551 GT:AD:DP:GQ:PL 0/1:28,19:47:99:382,0,759 4 106474096 rs6533206 T C 3664.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3693,378,0 4 106819053 rs34712979 G A 1613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=-2.571;SOR=0.661 GT:AD:DP:GQ:PL 0/1:49,68:117:99:1642,0,1071 4 106861730 rs4340795 A G 829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.527;SOR=0.555 GT:AD:DP:GQ:PL 0/1:38,37:75:99:858,0,987 4 107133919 rs17036613 A G 579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.195;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=3.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.225;SOR=0.905 GT:AD:DP:GQ:PL 0/1:31,26:57:99:608,0,748 4 107156462 rs34961213 C T 580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=1.735;SOR=0.797 GT:AD:DP:GQ:PL 0/1:34,26:60:99:609,0,1005 4 107168431 rs3775091 G C 3380.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3409,350,0 4 107171637 rs139991421 TAAATA T 783.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.65;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=6.235;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.495;QD=17.42;ReadPosRankSum=0.182;SOR=0.877 GT:AD:DP:GQ:PL 0/1:23,22:45:99:821,0,1502 4 107246136 rs3737498 C A 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=0.479;SOR=1.209 GT:AD:DP:GQ:PL 0/1:32,36:68:99:872,0,769 4 107279450 rs7654865 C T 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=-0.395;SOR=0.635 GT:AD:DP:GQ:PL 0/1:40,60:100:99:1581,0,1002 4 107279482 rs12645490 T A 1353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.232;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=1.053;SOR=0.362 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1382,0,1170 4 108575989 rs3733633 G A 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=1.402;SOR=0.703 GT:AD:DP:GQ:PL 0/1:50,73:123:99:1708,0,1100 4 108641300 rs973126 T C 5440.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.58;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5469,500,0 4 108641317 rs1127006 G A 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.191;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=1.138;SOR=0.749 GT:AD:DP:GQ:PL 0/1:90,68:158:99:1637,0,2287 4 108868515 rs6856745 T C 3181.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.47;SOR=1.708 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3210,293,0 4 108931039 rs4956145 T C 2640.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=31.44;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2669,251,0 4 108999366 rs4956157 G A 2606.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=1.32 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2635,248,0 4 109669319 rs33958723 TA T 289.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.3;ReadPosRankSum=-1.112;SOR=0.638 GT:AD:DP:GQ:PL 0/1:28,18:55:99:327,0,627 4 109672194 rs2276971 G A 398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=6.386;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.14;ReadPosRankSum=-1.664;SOR=1.762 GT:AD:DP:GQ:PL 0/1:31,18:49:99:427,0,792 4 109674116 rs1377210 A G 837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.639;SOR=0.76 GT:AD:DP:GQ:PL 0/1:34,40:74:99:866,0,810 4 109745336 rs7689008 T G 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-1.287;SOR=0.569 GT:AD:DP:GQ:PL 0/1:53,56:109:99:1407,0,1333 4 109769899 rs13135591 C T 1419.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1448,150,0 4 109841743 rs17596705 C T 845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.124;SOR=0.614 GT:AD:DP:GQ:PL 0/1:39,39:78:99:874,0,901 4 109895718 rs70949061 GA G 663.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.119;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.073;QD=9.62;ReadPosRankSum=1.148;SOR=0.906 GT:AD:DP:GQ:PL 0/1:36,33:69:99:701,0,868 4 109969337 rs3108954 G T 1178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.588;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-1.829;SOR=0.592 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1207,0,1052 4 110384047 rs70949082 G GCTTTT 2842.73 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.12;SOR=1.573 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2880,192,0 4 110581363 rs4698744 T A 997.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1026,105,0 4 110678925 rs11098044 T C 1719.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=29.15;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1748,177,0 4 110681505 rs2298749 C T 1219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.97;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-0.75;SOR=0.913 GT:AD:DP:GQ:PL 0/1:51,50:101:99:1248,0,1226 4 110737389 rs2276326 T C 2076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.075;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=5.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=0.335;SOR=0.604 GT:AD:DP:GQ:PL 0/1:88,90:178:99:2105,0,2009 4 110737549 rs6828254 G A 3970.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=1.537 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3999,386,0 4 110765361 rs7681770 T G 1907.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1936,198,0 4 110765372 rs7657133 A G 1817.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1846,183,0 4 110772711 rs17040904 C T 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.778;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=7.299;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-2.181;SOR=1.157 GT:AD:DP:GQ:PL 0/1:111,79:190:99:1934,0,2568 4 110773067 rs4698797 G A 1622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.947;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.4;SOR=0.624 GT:AD:DP:GQ:PL 0/1:90,76:166:99:1651,0,2400 4 110790911 rs764205 A T 1772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-0.617;SOR=0.874 GT:AD:DP:GQ:PL 0/1:74,72:146:99:1801,0,1915 4 110866442 rs4698756 G A 897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.028;SOR=0.802 GT:AD:DP:GQ:PL 0/1:51,39:90:99:926,0,1287 4 110890153 rs140682556 G A 1720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.087;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.161;SOR=0.669 GT:AD:DP:GQ:PL 0/1:73,77:150:99:1749,0,1946 4 110901198 rs2237051 G A 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=0.222;SOR=0.593 GT:AD:DP:GQ:PL 0/1:83,66:149:99:1375,0,2047 4 110914427 rs4698803 A T 5709.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5738,585,0 4 111398208 rs10004516 A G 7524.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.22;ReadPosRankSum=1.772;SOR=0.39 GT:AD:DP:GQ:PL 1/1:1,248:249:99:7553,710,0 4 111409705 rs1126483 T C 6029.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6058,603,0 4 113066831 rs10002700 G A 4924.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4953,490,0 4 113199075 rs701759 A G 4608.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4637,447,0 4 113350415 rs11944513 C T 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.666;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-0.496;SOR=0.689 GT:AD:DP:GQ:PL 0/1:53,55:108:99:1059,0,1251 4 113352397 rs2074388 G A 2659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.442;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-1.753;SOR=0.795 GT:AD:DP:GQ:PL 0/1:90,101:191:99:2688,0,2092 4 113352628 rs13148353 A G 2529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-0.105;SOR=0.751 GT:AD:DP:GQ:PL 0/1:95,102:197:99:2558,0,2476 4 113352899 rs2074379 G A 2878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.173;SOR=0.728 GT:AD:DP:GQ:PL 0/1:124,120:244:99:2907,0,3071 4 113353052 rs17044681 C T 3140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.796;SOR=0.568 GT:AD:DP:GQ:PL 0/1:141,131:272:99:3169,0,3438 4 113353285 rs11726117 T C 2773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.185;SOR=0.651 GT:AD:DP:GQ:PL 0/1:148,124:272:99:2802,0,3669 4 113359703 rs231247 A G 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.519;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-2.554;SOR=0.655 GT:AD:DP:GQ:PL 0/1:91,75:166:99:1719,0,2163 4 113436044 rs901474 T G 9285.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9314,920,0 4 113482146 rs17605622 G A 941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=1.134;SOR=0.963 GT:AD:DP:GQ:PL 0/1:36,42:78:99:970,0,834 4 113524723 rs17669218 G A 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.287;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=-1.553;SOR=0.63 GT:AD:DP:GQ:PL 0/1:52,41:93:99:821,0,1356 4 113539969 rs7696816 T C 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.92;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=5.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=-2.151;SOR=0.912 GT:AD:DP:GQ:PL 0/1:52,63:115:99:1762,0,1317 4 113568126 . TA T 268.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.12;ReadPosRankSum=-0.081;SOR=0.684 GT:AD:DP:GQ:PL 0/1:64,22:101:99:306,0,1512 4 113568359 rs141178932 G C 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.923;SOR=0.552 GT:AD:DP:GQ:PL 0/1:53,60:113:99:1609,0,1513 4 114277676 rs150878494 G A 2116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.192;SOR=0.651 GT:AD:DP:GQ:PL 0/1:90,88:178:99:2145,0,2187 4 114286357 . ATGTG A,ATG 3166.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-2.19;ClippingRankSum=0;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=31.35;ReadPosRankSum=0.26;SOR=1.127 GT:AD:DP:GQ:PL 1/2:2,19,80:110:99:3204,2326,2362,644,0,407 4 114582860 rs3775975 C T 348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-1.189;SOR=0.693 GT:AD:DP:GQ:PL 0/1:17,17:34:99:377,0,401 4 114823986 rs75252202 C T 2286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.786;SOR=0.827 GT:AD:DP:GQ:PL 0/1:103,95:198:99:2315,0,2562 4 115544714 rs6851610 A G 7040.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7069,728,0 4 115589302 rs11098261 A G 4559.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4588,413,0 4 118975146 rs13152576 C T 2475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.872;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.194;SOR=0.76 GT:AD:DP:GQ:PL 0/1:76,108:184:99:2504,0,1871 4 119035948 rs5861378 T TC 2755.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;MQRankSum=0.222;QD=29.63;ReadPosRankSum=-1.252;SOR=0.997 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2793,253,0 4 119161795 rs617430 G A 2264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.169;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.246;SOR=0.568 GT:AD:DP:GQ:PL 0/1:85,99:184:99:2293,0,1891 4 119174640 rs5861382 CT C 1242.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.802;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;MQRankSum=0.286;QD=21.8;ReadPosRankSum=-0.716;SOR=1.061 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1280,115,0 4 119219909 rs28661939 C A 1302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.8;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=7.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.394;SOR=0.289 GT:AD:DP:GQ:PL 0/1:59,55:114:99:1331,0,1585 4 119237348 rs2292597 T C 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.751;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=-1.506;SOR=0.781 GT:AD:DP:GQ:PL 0/1:62,72:134:99:1884,0,1427 4 119256617 rs3215324 C CT 1342.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.707;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.088;SOR=1.03 GT:AD:DP:GQ:PL 0/1:60,61:121:99:1380,0,1174 4 119273712 rs13119545 C G 3262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.884;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=4.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=0.912;SOR=0.75 GT:AD:DP:GQ:PL 0/1:207,133:340:99:3291,0,5406 4 119609182 . C CT 183.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.37;ReadPosRankSum=1.352;SOR=0.774 GT:AD:DP:GQ:PL 0/1:22,20:61:99:221,0,448 4 119736598 rs6843524 C T 5266.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5295,507,0 4 119736796 rs2389688 A C 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.835;SOR=0.632 GT:AD:DP:GQ:PL 0/1:100,88:188:99:1997,0,2483 4 119745768 rs139956480 A G 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=0.777;SOR=0.489 GT:AD:DP:GQ:PL 0/1:68,44:112:99:1002,0,1644 4 119944566 rs138607209 C CT 1025.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.665;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=4.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.41;ReadPosRankSum=-0.523;SOR=1.168 GT:AD:DP:GQ:PL 0/1:73,49:122:99:1063,0,1580 4 119947961 rs70944826 AAAG A 4195.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=5.772;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.638;QD=15.95;ReadPosRankSum=2.041;SOR=0.906 GT:AD:DP:GQ:PL 0/1:150,113:263:99:4233,0,5862 4 119947985 rs12645298 G C 2891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=14.953;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.107;QD=11.38;ReadPosRankSum=0.736;SOR=1.082 GT:AD:DP:GQ:PL 0/1:139,115:254:99:2920,0,3817 4 119948046 rs17263971 A C 4765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.225;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=8.924;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-1.163;QD=15.73;ReadPosRankSum=1.17;SOR=1.14 GT:AD:DP:GQ:PL 0/1:128,175:303:99:4794,0,3105 4 119951647 rs7698598 A G 7668.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7697,695,0 4 120079159 rs11721566 A G 3956.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=1.536 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3985,377,0 4 120177522 rs7668372 G T 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.62;SOR=0.732 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1072,0,1434 4 120181724 rs35372126 A G 1909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.367;SOR=0.608 GT:AD:DP:GQ:PL 0/1:83,87:170:99:1938,0,1906 4 120212425 rs34076547 AT A 617.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.067;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=1.552;SOR=0.807 GT:AD:DP:GQ:PL 0/1:17,30:47:99:655,0,351 4 120214030 rs3749591 T G 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.681;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.881;SOR=0.742 GT:AD:DP:GQ:PL 0/1:93,70:163:99:1808,0,2160 4 120240238 rs1511025 T C 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-0.192;SOR=0.368 GT:AD:DP:GQ:PL 0/1:28,28:56:99:591,0,699 4 120240802 rs71595363 C CATAATAATA 722.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=5.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.59;ReadPosRankSum=1.857;SOR=0.235 GT:AD:DP:GQ:PL 0/1:13,19:40:99:760,0,955 4 120241849 rs4834770 A G 3106.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.74;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3135,335,0 4 120241902 rs1799883 T C 3485.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.81;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3514,387,0 4 120423719 rs3733523 C T 482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=2.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.209;SOR=1.062 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,15:38:99:0|1:120423719_C_T:511,0,1081 4 120423729 rs3733524 T C 501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.452;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.243;SOR=0.886 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,16:41:99:0|1:120423719_C_T:530,0,1110 4 120446868 rs3832310 GA G 1096.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.9;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=6.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.019;SOR=0.283 GT:AD:DP:GQ:PL 0/1:27,56:85:99:1134,0,515 4 120474859 rs11947234 A G 454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.89;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=1.657;SOR=0.553 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,22:58:99:1|0:120474858_C_T:483,0,907 4 120481431 rs34308924 T C 330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.297;SOR=1.112 GT:AD:DP:GQ:PL 0/1:16,15:31:99:359,0,412 4 120528327 rs3733526 G A 4641.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4670,491,0 4 120983259 rs2908989 T C 2542.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2571,272,0 4 121706201 rs12499000 A G 3313.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3342,333,0 4 121719584 rs66792327 T TA 1787.73 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=28.83;SOR=3.407 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1825,189,0 4 121738049 rs343192 T C 2966.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2995,312,0 4 121957734 rs1397645 T C 5418.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5447,543,0 4 121958091 rs3733558 T G 5761.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5790,543,0 4 121958187 rs3822230 A G 5944.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5973,573,0 4 121958697 rs3733560 G A 4655.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4684,459,0 4 121966807 rs2276959 C T 2659.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.356 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2688,261,0 4 122137662 rs7663440 T G 3314.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.935;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.321;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.58;ReadPosRankSum=-0.563;SOR=0.477 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3343,334,0 4 122257942 rs4558890 A C 2858.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2887,302,0 4 122301622 rs17438900 A C 7424.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7453,699,0 4 122683007 rs4370153 G A 3018.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.7;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3047,324,0 4 122739183 rs3217772 C G 1150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.639;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=1.765;SOR=0.487 GT:AD:DP:GQ:PL 0/1:41,42:83:99:1179,0,1032 4 122742217 rs769242 T C 1452.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1481,144,0 4 122749436 rs2706793 G T 2127.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=1.376 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2156,198,0 4 122749541 rs1507994 C T 590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=4.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=1.603;SOR=0.71 GT:AD:DP:GQ:PL 0/1:41,27:68:99:619,0,1048 4 122872719 rs1396082 G A 7551.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,264:264:99:7580,788,0 4 123140739 rs6534345 G C 2884.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.76;SOR=1.638 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2913,249,0 4 123280860 rs1127348 T C 2921.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.46;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2950,270,0 4 123377482 rs2069763 C A 1929.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1958,204,0 4 123838758 rs12648093 A G 4423.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4452,461,0 4 123843716 rs13134412 T C 5232.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.453 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5261,525,0 4 123949556 rs1472949 G A 2640.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=1.408 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2669,267,0 4 125590478 rs1874748 T C 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.519;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-1.467;SOR=0.796 GT:AD:DP:GQ:PL 0/1:99,100:199:99:2359,0,2292 4 125591423 rs3822116 A T 3185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=1.597;SOR=0.681 GT:AD:DP:GQ:PL 0/1:116,133:249:99:3214,0,2790 4 125591687 rs3733471 A G 2226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.525;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.607;SOR=0.655 GT:AD:DP:GQ:PL 0/1:100,86:186:99:2255,0,2596 4 125592065 rs10018651 C A 2464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.266;SOR=0.837 GT:AD:DP:GQ:PL 0/1:121,104:225:99:2493,0,3182 4 126237971 rs72928772 C T 8210.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8239,798,0 4 126238924 rs6847454 A T 6952.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6981,672,0 4 126239986 rs1039808 C T 4179.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4208,426,0 4 126240510 rs2940779 T C 2490.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2519,240,0 4 126241871 rs2710555 C T 3480.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3509,350,0 4 126329789 rs958415 T C 3162.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3191,318,0 4 126369872 rs988863 G C 4778.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.65;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4807,426,0 4 126372742 rs1567047 G A 5941.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5970,576,0 4 126372975 rs76491994 A C 2074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.393;SOR=0.746 GT:AD:DP:GQ:PL 0/1:85,79:164:99:2103,0,2203 4 126373789 rs12650153 G A 6915.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6944,700,0 4 126412575 rs1014866 A G 5993.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.11;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6022,543,0 4 128565000 rs3749507 A G 2481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.541;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=-0.353;SOR=0.509 GT:AD:DP:GQ:PL 0/1:71,95:166:99:2510,0,1690 4 128584580 rs4833380 G A 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.106;SOR=0.627 GT:AD:DP:GQ:PL 0/1:48,46:94:99:1107,0,1141 4 128621144 rs377528224 CT C 85.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.461;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.59;ReadPosRankSum=2.717;SOR=0.698 GT:AD:DP:GQ:PL 0/1:41,13:62:99:123,0,984 4 128689936 rs2305958 A G 2891.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2920,311,0 4 128723042 rs1380154 T C 2710.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2739,270,0 4 128751775 . CT C 95.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.445;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.35;ReadPosRankSum=1.439;SOR=0.317 GT:AD:DP:GQ:PL 0/1:57,14:71:99:133,0,1359 4 128807219 rs3811740 T A 3107.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3136,309,0 4 128814964 rs17012739 G T 2623.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2652,281,0 4 129012181 rs2306054 G A 2687.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2716,279,0 4 129012638 rs1064205 A G 2773.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2802,273,0 4 129043204 rs12508837 C G 4642.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.92;QD=30.15;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4671,461,0 4 129043286 rs3733320 C T 3468.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3497,323,0 4 129043617 rs3733322 T G 3990.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.18;QD=43.85;SOR=1.389 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,91:91:99:1|1:129043601_T_TG:4019,274,0 4 129100643 rs12645577 G A 2328.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2357,246,0 4 129867280 rs10028124 T A 846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=1.118;SOR=0.495 GT:AD:DP:GQ:PL 0/1:35,39:74:99:875,0,786 4 129924977 rs3113487 C A 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=6.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.521;SOR=0.453 GT:AD:DP:GQ:PL 0/1:58,64:122:99:1416,0,1393 4 130023759 rs1757935 A T 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-1.2;SOR=0.716 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1129,0,989 4 130030652 rs337277 A G 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.58;ReadPosRankSum=1.081;SOR=0.754 GT:AD:DP:GQ:PL 0/1:46,66:112:99:1773,0,1114 4 135121066 rs11099273 T G 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.416;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.115;SOR=1.056 GT:AD:DP:GQ:PL 0/1:76,71:147:99:1805,0,1779 4 135121368 rs2044116 G T 2771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.538;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-0.521;SOR=0.702 GT:AD:DP:GQ:PL 0/1:159,129:288:99:2800,0,3573 4 135121601 rs10009368 C T 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.247;SOR=0.546 GT:AD:DP:GQ:PL 0/1:99,107:206:99:2513,0,2443 4 139100372 rs4479754 C T 3112.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=1.814 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3141,288,0 4 139140494 rs6838248 G C 1509.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1538,153,0 4 140005294 rs4863628 A G 8214.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;MQRankSum=0.124;QD=31.6;ReadPosRankSum=-0.887;SOR=0.297 GT:AD:DP:GQ:PL 1/1:1,259:260:99:8243,739,0 4 140640703 rs61747885 G T 3748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=0.667;SOR=0.718 GT:AD:DP:GQ:PL 0/1:148,152:300:99:3777,0,3590 4 140651584 rs5862430 TCTG T 7617.73 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=44.55;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,171:181:99:7655,515,0 4 140810637 rs11100342 C T 9814.77 PASS AC=2;AF=1;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,327:327:99:9843,979,0 4 140810700 rs11729794 C T 3491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=0.343;SOR=0.902 GT:AD:DP:GQ:PL 0/1:131,138:269:99:3520,0,3322 4 140811083 rs373804063 GC G 6927.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.243;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.1;MQRankSum=-0.62;QD=32.22;ReadPosRankSum=-0.975;SOR=0.702 GT:AD:DP:GQ:PL 1/1:2,213:215:99:6965,589,0 4 140811085 rs58287721 TGCTGCTGCTGC T 6502.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.94;MQRankSum=-0.394;QD=39.65;ReadPosRankSum=-0.654;SOR=0.74 GT:AD:DP:GQ:PL 1/1:2,162:176:99:6540,547,0 4 140811135 rs3733382 T C 8776.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.05;QD=41.6;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,211:211:99:8805,637,0 4 141264871 rs16998462 A G 441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=3.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.01;ReadPosRankSum=0.178;SOR=0.337 GT:AD:DP:GQ:PL 0/1:41,22:63:99:470,0,1095 4 141543997 rs1560440 G A 2300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.413;SOR=0.786 GT:AD:DP:GQ:PL 0/1:131,109:240:99:2329,0,3141 4 141590135 rs61742550 C T 1755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.137;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.486;SOR=1.009 GT:AD:DP:GQ:PL 0/1:92,76:168:99:1784,0,2061 4 141600320 rs4956329 A G 2383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=0.461;SOR=0.766 GT:AD:DP:GQ:PL 0/1:72,93:165:99:2412,0,1708 4 142150860 rs7684664 T G 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.332;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-1.182;SOR=0.81 GT:AD:DP:GQ:PL 0/1:61,95:156:99:2246,0,1501 4 142640637 rs2857261 A G 111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.191;ClippingRankSum=-0;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=8.6;ReadPosRankSum=-1.691;SOR=0.495 GT:AD:DP:GQ:PL 0/1:7,6:13:99:140,0,210 4 143007419 rs336324 A G 1471.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.314 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1500,153,0 4 143130034 rs1907123 A T 2497.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2526,267,0 4 143324094 rs1982966 G A 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.712;SOR=0.534 GT:AD:DP:GQ:PL 0/1:32,42:74:99:920,0,688 4 144135718 rs4285045 G A 4658.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4687,467,0 4 144442611 rs11100790 T C 1925.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1954,198,0 4 144442735 rs11541117 C T 2540.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2569,266,0 4 144456124 rs6818251 A G 2643.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2672,270,0 4 144467104 rs13139128 T C 2158.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2187,213,0 4 144617842 rs1545437 G T 1099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.95;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-0.748;SOR=0.672 GT:AD:DP:GQ:PL 0/1:76,50:126:99:1128,0,2211 4 144618610 rs1034494 G C 4086.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4115,386,0 4 144620758 rs61427459 C T 2988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.795;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=1.9;SOR=0.832 GT:AD:DP:GQ:PL 0/1:147,123:270:99:3017,0,3621 4 144621199 rs11100802 A G 3062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.946;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.086;SOR=0.642 GT:AD:DP:GQ:PL 0/1:116,125:241:99:3091,0,2662 4 144621779 rs55935372 A G 3465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-2.891;SOR=0.71 GT:AD:DP:GQ:PL 0/1:155,152:307:99:3494,0,3408 4 144801662 rs1132785 C T,G 6980.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=56.68;QD=33.56;SOR=1.234 GT:AD:DP:GQ:PL 1/2:0,102,106:208:99:7009,4276,3971,2957,0,3723 4 144801671 rs146400730 A C 3660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.979;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.5;MQ=56.5;MQRankSum=-5.083;QD=19.37;ReadPosRankSum=0.812;SOR=0.404 GT:AD:DP:GQ:PL 0/1:94,95:189:99:3689,0,3627 4 144921607 rs1849119 C T 1375.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.46;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1404,155,0 4 145041686 rs4867 A G 974.77 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.93;QD=32.49;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,30:30:90:1003,90,0 4 145041707 rs7658293 C A 594.77 PASS AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.75;QD=42.48;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,14:14:42:1|1:145041707_C_A:623,42,0 4 145041708 rs7687256 T C 594.77 PASS AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.75;QD=42.48;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,14:14:42:1|1:145041707_C_A:623,42,0 4 145041720 rs7682260 A G 342.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.41;QD=38.09;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,9:9:27:371,27,0 4 145041741 rs4449373 T G 196.9 PASS AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.09;QD=39.38;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,5:5:15:1|1:145041741_T_G:225,15,0 4 145041750 rs45468202 A C 321.78 PASS AC=2;AF=1;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.48;QD=40.22;SOR=4.407 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,8:8:24:1|1:145041741_T_G:350,24,0 4 145573954 rs3215015 GA G 1567.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.632;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.75;ReadPosRankSum=-1.22;SOR=0.966 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1605,141,0 4 146031236 . AT A 275.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.36;ReadPosRankSum=-0.058;SOR=0.896 GT:AD:DP:GQ:PL 0/1:59,23:98:99:313,0,1236 4 146046138 rs4835203 T C 2226.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2255,232,0 4 146576418 rs2270655 G C 2698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.68;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=1.142;SOR=0.657 GT:AD:DP:GQ:PL 0/1:108,108:216:99:2727,0,2788 4 146601349 rs17020528 C T 475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-0.139;SOR=1.172 GT:AD:DP:GQ:PL 0/1:20,19:39:99:504,0,539 4 147560457 rs5862765 T TGGC 10038.7 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0;DB;DP=606;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=0.472;QD=23.96;ReadPosRankSum=-0.925;SOR=0.83 GT:AD:DP:GQ:PL 0/1:42,377:429:99:10076,0,335 4 147628705 rs199560439 TA T 331.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.427;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=-1.984;SOR=0.694 GT:AD:DP:GQ:PL 0/1:30,20:52:99:369,0,666 4 148589677 rs2718454 C T 1758.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.48;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1787,192,0 4 148778685 rs11410393 G GT 701.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.39;ReadPosRankSum=1.619;SOR=0.487 GT:AD:DP:GQ:PL 1/1:1,29:30:64:739,64,0 4 149356516 rs5525 A G 6841.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6870,651,0 4 149357475 rs5522 C T 7741.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7770,784,0 4 149358014 rs2070951 G C 3175.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=1.563 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3204,303,0 4 150474280 rs2726745 G A 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=1.113;SOR=0.531 GT:AD:DP:GQ:PL 0/1:52,42:94:99:920,0,1304 4 150656603 rs17587072 T C 762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.07;SOR=0.871 GT:AD:DP:GQ:PL 0/1:23,33:56:99:791,0,508 4 151177340 rs13152819 C T 2993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.415;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.48;ReadPosRankSum=-0.255;SOR=0.566 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,96:162:99:0|1:151177340_C_T:3022,0,3265 4 151177341 rs13152820 C G 2993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.93;ReadPosRankSum=0.356;SOR=0.638 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,98:167:99:0|1:151177340_C_T:3022,0,3265 4 151231371 rs1813134 T C 1795.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1824,186,0 4 151765243 rs186080 G A 1060.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1089,114,0 4 152070633 rs3792611 T A 1792.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1821,186,0 4 152097962 rs11934792 T C 3615.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.11;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3644,318,0 4 152108560 rs4266274 A G 1734.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1763,179,0 4 152201018 rs148861921 G GCAGGT 2295.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.62;ReadPosRankSum=-0.094;SOR=0.653 GT:AD:DP:GQ:PL 0/1:95,62:157:99:2333,0,3788 4 152201053 rs36097019 G A 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=1.228;SOR=0.769 GT:AD:DP:GQ:PL 0/1:75,99:174:99:2257,0,1665 4 152212486 rs13126069 C T 1410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.025;SOR=0.48 GT:AD:DP:GQ:PL 0/1:66,68:134:99:1439,0,1651 4 152212603 rs2407221 T G 2711.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2740,278,0 4 152498625 rs17275536 C T 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.323;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.533;SOR=0.762 GT:AD:DP:GQ:PL 0/1:64,47:111:99:1141,0,1613 4 152583907 rs11378262 C CT 627.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=0.855;QD=11.41;ReadPosRankSum=-0.824;SOR=0.994 GT:AD:DP:GQ:PL 0/1:21,34:82:99:665,0,409 4 152592469 rs112033226 A ATTAC 687.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=1.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-1.605;SOR=0.974 GT:AD:DP:GQ:PL 0/1:38,20:58:99:725,0,1854 4 152609920 rs11292952 TA T 733.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.686;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=5.91;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.797;QD=10.33;ReadPosRankSum=0.885;SOR=1.033 GT:AD:DP:GQ:PL 0/1:31,40:83:99:771,0,644 4 152681952 rs1429559 A G 1364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.308;SOR=0.904 GT:AD:DP:GQ:PL 0/1:49,56:105:99:1393,0,1265 4 153549730 . AAAAAAAAAAAAAAAC A 67.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.726;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.12;ReadPosRankSum=1.195;SOR=1.129 GT:AD:DP:GQ:PL 0/1:21,11:32:99:105,0,542 4 153690842 rs4696354 T C 4352.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4381,432,0 4 153896358 rs3811833 C T 10955.8 PASS AC=2;AF=1;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,365:365:99:10984,1092,0 4 154216710 rs893805 G A 4305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=1.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=0.797;SOR=0.608 GT:AD:DP:GQ:PL 0/1:163,166:329:99:4334,0,4251 4 154387597 rs71620317 G C 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.323;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.13;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.543;SOR=0.813 GT:AD:DP:GQ:PL 0/1:102,90:192:99:2058,0,2296 4 154479430 rs6848033 T C 767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.108;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=1.05;SOR=0.889 GT:AD:DP:GQ:PL 0/1:30,31:61:99:796,0,689 4 154624656 rs3804099 T C 2199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.165;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=0.829;SOR=0.731 GT:AD:DP:GQ:PL 0/1:76,84:160:99:2228,0,1863 4 154631543 rs2405432 A T 3243.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3272,330,0 4 154631563 rs1339 T C 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-1.072;SOR=0.613 GT:AD:DP:GQ:PL 0/1:46,66:112:99:1628,0,1057 4 154631587 rs1337 C G 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.53;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=-1.127;SOR=0.666 GT:AD:DP:GQ:PL 0/1:67,49:116:99:1158,0,1642 4 154633734 rs2289318 G C 664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=1.037;SOR=0.968 GT:AD:DP:GQ:PL 0/1:23,29:52:99:693,0,614 4 154644537 rs10517577 T C 456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.141;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.88;ReadPosRankSum=-0.523;SOR=0.495 GT:AD:DP:GQ:PL 0/1:34,24:58:99:485,0,748 4 154709856 rs6535952 A C 7286.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7315,752,0 4 155250660 rs75602216 G A 1000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.348;SOR=1.22 GT:AD:DP:GQ:PL 0/1:45,39:84:99:1029,0,1267 4 155256205 rs6858712 G A 4776.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4805,497,0 4 155287535 rs10017772 T C 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-1.186;SOR=0.75 GT:AD:DP:GQ:PL 0/1:40,51:91:99:1194,0,892 4 155295076 rs11721758 A G 802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=1.631;SOR=0.481 GT:AD:DP:GQ:PL 0/1:23,32:55:99:831,0,565 4 155410650 rs72731014 T C 3518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.317;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=-0.157;SOR=0.626 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,96:200:99:0|1:155410650_T_C:3547,0,4386 4 155410667 rs55810732 G A 3453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.335;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.36;ReadPosRankSum=1.836;SOR=0.588 GT:AD:DP:GQ:PGT:PID:PL 0/1:109,90:199:99:0|1:155410650_T_C:3482,0,4353 4 155410731 rs72731016 G C 3090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.036;SOR=0.662 GT:AD:DP:GQ:PL 0/1:133,124:257:99:3119,0,3656 4 155410822 rs4696593 G A 3906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=1.338;SOR=0.7 GT:AD:DP:GQ:PL 0/1:156,165:321:99:3935,0,3867 4 155411065 rs7656522 T C 8724.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.5;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8753,831,0 4 155411104 rs6536016 A C 8763.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8792,831,0 4 155411649 rs13130030 G A 3411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.264;SOR=0.683 GT:AD:DP:GQ:PL 0/1:169,145:314:99:3440,0,4543 4 155411939 rs17373874 A C 3722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=1.473;SOR=0.82 GT:AD:DP:GQ:PL 0/1:136,150:286:99:3751,0,3137 4 155412464 rs13149269 C T 3253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.7;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.861;SOR=0.669 GT:AD:DP:GQ:PL 0/1:149,137:286:99:3282,0,3768 4 155459194 rs7668818 A T 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.138;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.15;ReadPosRankSum=-2.028;SOR=0.756 GT:AD:DP:GQ:PL 0/1:39,27:66:99:566,0,837 4 155461113 rs7671792 T C 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.777;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.458;SOR=1.047 GT:AD:DP:GQ:PL 0/1:25,25:50:99:644,0,541 4 155488821 rs6056 C T 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1.684;SOR=0.594 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1180,0,1360 4 155490649 rs140114081 TTTTG T 1359.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.075;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.078;QD=17.43;ReadPosRankSum=-0.164;SOR=0.454 GT:AD:DP:GQ:PL 0/1:41,37:78:99:1397,0,2260 4 155490832 rs4681 C T 1545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.41;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.588;SOR=0.709 GT:AD:DP:GQ:PL 0/1:84,68:152:99:1574,0,2194 4 155491759 rs4220 G A 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.391;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.66;SOR=0.448 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1469,0,1627 4 155525970 rs1049636 G A 3720.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3749,347,0 4 156135676 rs1047214 C T 5323.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5352,540,0 4 156136027 rs2880415 C T 4043.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4072,407,0 4 156273768 rs2305050 T C 2077.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=32.98;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2106,189,0 4 156273777 . GTTTATC G 857.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.69;MQRankSum=2.237;QD=15.88;ReadPosRankSum=-0.412;SOR=0.58 GT:AD:DP:GQ:PL 0/1:29,25:54:99:895,0,1101 4 156276289 rs2341894 C T 839.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,29:29:87:868,87,0 4 156276317 rs2880181 A G 663.77 PASS AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,21:21:63:692,63,0 4 156283302 rs6829123 G A 1803.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1832,192,0 4 156289900 rs3733390 C T 3840.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3869,392,0 4 156296910 rs41280485 C T 830.77 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,29:29:87:859,87,0 4 156632391 rs11944673 A G 1321.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=1.455 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1350,129,0 4 156643183 rs2306554 C A 1001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.421;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.42;ReadPosRankSum=0.69;SOR=0.36 GT:AD:DP:GQ:PL 0/1:19,42:61:99:1030,0,467 4 156706482 rs1459853 G A 335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.665;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.193;SOR=0.603 GT:AD:DP:GQ:PL 0/1:12,15:27:99:364,0,255 4 156721198 rs2229202 C T 1184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.928;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=-0.697;SOR=0.731 GT:AD:DP:GQ:PL 0/1:40,46:86:99:1213,0,937 4 156787340 rs6848883 G A 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.448;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-1.684;SOR=0.601 GT:AD:DP:GQ:PL 0/1:31,31:62:99:722,0,689 4 156838535 rs77984239 T G 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.068;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-1.3;SOR=0.6 GT:AD:DP:GQ:PL 0/1:49,46:95:99:1079,0,1141 4 156874849 rs7671674 G T 3075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.559;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=8.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=0.223;SOR=0.364 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,91:209:99:0|1:156874833_G_A:3104,0,5690 4 158043559 rs41280501 C T 659.77 PASS AC=2;AF=1;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,23:23:69:688,69,0 4 158065038 rs12507409 T C 4407.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4436,476,0 4 158073913 rs1801154 T C 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.784;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-1.767;SOR=0.44 GT:AD:DP:GQ:PL 0/1:57,43:100:99:1059,0,1443 4 158238830 rs4302506 T C 663.77 PASS AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,21:21:63:692,63,0 4 159076826 rs6830702 C T 4177.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4206,408,0 4 159601676 rs11559290 C T 1381.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.09;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1410,152,0 4 159618695 rs376153836 CT C 94.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.33;ReadPosRankSum=-0.671;SOR=0.567 GT:AD:DP:GQ:PL 0/1:56,15:87:99:132,0,1372 4 159631991 rs9410 G T 2408.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2437,249,0 4 159894250 rs619128 C T 2296.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=1.451 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2325,213,0 4 159894305 rs662473 T C 3333.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3362,344,0 4 160271268 rs11320537 GT G 1075.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;MQRankSum=0.369;QD=19.92;ReadPosRankSum=-0.083;SOR=1.002 GT:AD:DP:GQ:PL 1/1:5,49:58:34:1113,34,0 4 160277276 rs1135004 C T 6951.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6980,701,0 4 162459299 rs4691769 T C 3415.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3444,327,0 4 162577597 rs4691015 T G 1237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.245;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.085;SOR=0.841 GT:AD:DP:GQ:PL 0/1:60,53:113:99:1266,0,1451 4 162697014 rs34423160 T G 486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.125;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-2.126;SOR=1.158 GT:AD:DP:GQ:PL 0/1:19,19:38:99:515,0,492 4 162841814 rs5863499 T TA 2040.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;MQRankSum=0.243;QD=26.16;ReadPosRankSum=-0.19;SOR=1.519 GT:AD:DP:GQ:PL 1/1:2,76:78:99:2078,183,0 4 164272703 rs11946004 G A 938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.003;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.983;SOR=0.603 GT:AD:DP:GQ:PL 0/1:37,43:80:99:967,0,964 4 164435265 rs2304802 A C 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=2.487;SOR=0.824 GT:AD:DP:GQ:PL 0/1:39,33:72:99:630,0,956 4 164440581 rs1561736 T C 2390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.56;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=7.306;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.757;QD=12.85;ReadPosRankSum=0.44;SOR=0.672 GT:AD:DP:GQ:PL 0/1:80,106:186:99:2419,0,1815 4 164466824 rs13130399 C T 1487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=1.297;SOR=0.635 GT:AD:DP:GQ:PL 0/1:58,69:127:99:1516,0,1322 4 165878609 rs3196673 T A 2749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.059;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.078;SOR=0.764 GT:AD:DP:GQ:PL 0/1:124,110:234:99:2778,0,3102 4 166021811 rs6536890 G C 1752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.648;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=-1.64;SOR=0.714 GT:AD:DP:GQ:PL 0/1:53,68:121:99:1781,0,1247 4 166231868 rs28678193 A G 1396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.398;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=1.185;SOR=0.671 GT:AD:DP:GQ:PL 0/1:61,53:114:99:1425,0,1516 4 166388825 . CT C 170.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.266;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.69;ReadPosRankSum=-0.158;SOR=0.647 GT:AD:DP:GQ:PL 0/1:82,19:119:99:208,0,1920 4 167012381 rs2654492 G A 4708.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=28.89;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4737,489,0 4 167012480 rs2646914 T C 3637.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.336 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3666,362,0 4 167012506 rs2254420 A G 2664.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2693,258,0 4 167675635 rs2305593 G A 2290.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2319,222,0 4 169083694 rs6836994 A C 2485.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.32 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2514,249,0 4 169086441 rs4405979 A G 1806.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=28.68;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1835,189,0 4 169098914 rs477897 A G 1675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.284;SOR=1.078 GT:AD:DP:GQ:PL 0/1:70,72:142:99:1704,0,1621 4 169143035 rs17611179 G A 1106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=4.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-0.363;SOR=0.354 GT:AD:DP:GQ:PL 0/1:61,51:112:99:1135,0,1644 4 169158471 rs6552559 T G 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.556;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=0.7;SOR=0.795 GT:AD:DP:GQ:PL 0/1:42,47:89:99:1227,0,1078 4 169158489 rs3828560 G C 1202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.239;SOR=0.658 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1231,0,1199 4 169158531 rs3805396 T C 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.406;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.255;SOR=0.955 GT:AD:DP:GQ:PL 0/1:57,46:103:99:1175,0,1317 4 169172098 rs17053841 C T 831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.94;QD=13.42;ReadPosRankSum=-0.862;SOR=0.603 GT:AD:DP:GQ:PL 0/1:28,34:62:99:860,0,708 4 169188780 rs576619 T C 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.36;ReadPosRankSum=0.571;SOR=0.536 GT:AD:DP:GQ:PL 0/1:33,56:89:99:1395,0,758 4 169189151 rs72693142 A G 549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.374;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=-2.127;SOR=0.752 GT:AD:DP:GQ:PL 0/1:46,23:69:99:578,0,1297 4 169190129 rs33910888 CA C 468.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=1.702;SOR=0.446 GT:AD:DP:GQ:PL 0/1:29,26:62:99:506,0,577 4 169197297 rs550625 C T 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=0.55;SOR=0.658 GT:AD:DP:GQ:PL 0/1:43,56:99:99:1415,0,1021 4 169208334 rs72693161 C T 512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.75;ReadPosRankSum=0.192;SOR=0.597 GT:AD:DP:GQ:PL 0/1:50,26:76:99:541,0,1404 4 169282355 rs2684348 T C 428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.92;ReadPosRankSum=-1.215;SOR=0.58 GT:AD:DP:GQ:PL 0/1:40,22:62:99:457,0,965 4 169292759 rs6829368 T C 2329.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=2.239 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2358,215,0 4 169299528 rs13110927 T C 851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.032;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=1.176;SOR=0.674 GT:AD:DP:GQ:PL 0/1:41,33:74:99:880,0,972 4 169312801 rs6840397 A G 281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=0.556;SOR=0.886 GT:AD:DP:GQ:PL 0/1:11,21:32:99:310,0,165 4 169315760 rs3749499 C A 3520.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3549,380,0 4 169317279 rs3857035 C T 389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=1.92;SOR=1.078 GT:AD:DP:GQ:PL 0/1:31,20:51:99:418,0,1262 4 169317284 rs5863929 T TA 778.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.075;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.852;QD=17.7;ReadPosRankSum=0.629;SOR=0.982 GT:AD:DP:GQ:PL 0/1:19,25:48:99:816,0,328 4 169336662 rs4692661 T C 2182.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2211,206,0 4 169341435 rs2130145 A G 3010.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3039,323,0 4 169369820 rs2712113 T A 2207.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.45;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2236,198,0 4 169369853 rs2712114 A T 2545.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2574,231,0 4 169393595 rs13149639 A G 1859.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1888,189,0 4 169432673 rs61051061 C T 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=0.413;SOR=0.832 GT:AD:DP:GQ:PL 0/1:50,57:107:99:1418,0,1162 4 169432841 rs1806729 G A 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.33;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.219;SOR=0.691 GT:AD:DP:GQ:PL 0/1:86,88:174:99:2059,0,2045 4 169433326 rs7655494 T C 2190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.154;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=-0.838;SOR=0.438 GT:AD:DP:GQ:PGT:PID:PL 0/1:89,59:148:99:0|1:169433326_T_C:2219,0,7650 4 169433327 rs7671781 G A 2190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.654;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=-0.056;SOR=0.433 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,58:148:99:0|1:169433326_T_C:2219,0,7650 4 169433333 rs7673220 C T 2126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.178;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.47;ReadPosRankSum=-0.112;SOR=0.415 GT:AD:DP:GQ:PGT:PID:PL 0/1:89,58:147:99:0|1:169433326_T_C:2155,0,7609 4 169433444 rs72695199 C T 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.218;SOR=0.619 GT:AD:DP:GQ:PL 0/1:101,97:198:99:2257,0,2442 4 169606649 rs62333891 C A 620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=0.184;SOR=0.429 GT:AD:DP:GQ:PL 0/1:39,28:67:99:649,0,986 4 169835134 rs1059444 A G 488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.599;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=0.982;SOR=0.588 GT:AD:DP:GQ:PGT:PID:PL 0/1:34,22:56:99:1|0:169835132_C_T:517,0,833 4 169923363 . CA C 306.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DP=49;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.17;ReadPosRankSum=-0.87;SOR=0.223 GT:AD:DP:GQ:PL 0/1:3,13:31:25:226,0,25 4 170077540 rs10024401 A G 3495.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=30.66;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3524,341,0 4 170077789 rs10518039 A G 3237.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=29.17;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3266,333,0 4 170354836 rs7680152 C T 2918.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2947,290,0 4 170428901 rs33933790 C T 741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.615;SOR=0.66 GT:AD:DP:GQ:PL 0/1:31,35:66:99:770,0,727 4 170581570 rs4692739 G A 2726.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2755,273,0 4 170634390 rs1058868 C T 1038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-0.854;SOR=0.638 GT:AD:DP:GQ:PL 0/1:72,48:120:99:1067,0,1658 4 170663235 rs1047642 C T 2569.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2598,267,0 4 170678993 rs11540095 T C 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-1.19;SOR=0.696 GT:AD:DP:GQ:PL 0/1:77,69:146:99:1583,0,1875 4 170987636 rs1480544 A G 592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.065;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.95;SOR=0.894 GT:AD:DP:GQ:PL 0/1:30,26:56:99:621,0,672 4 172973580 rs1505495 C A 2957.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.072;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=4.021;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.9;ReadPosRankSum=-0.678;SOR=0.973 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2986,308,0 4 173873170 rs11322401 TG T 2282.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.131;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.54;ReadPosRankSum=-0.043;SOR=1.347 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2320,206,0 4 174090004 rs3733477 G A 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=5.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-1.101;SOR=1.057 GT:AD:DP:GQ:PL 0/1:50,44:94:99:928,0,1298 4 174235092 rs75731353 A T 96.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.772;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=1.775;QD=3.58;ReadPosRankSum=-2.216;SOR=0.714 GT:AD:DP:GQ:PL 0/1:20,7:27:99:125,0,891 4 174235094 rs73872552 A T 310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.383;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=1.112;QD=12.95;ReadPosRankSum=-0.972;SOR=0.582 GT:AD:DP:GQ:PL 0/1:14,10:27:99:339,0,751 4 174239704 rs34885736 C T 457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.014;SOR=0.668 GT:AD:DP:GQ:PL 0/1:22,19:41:99:486,0,644 4 175225452 rs4695918 G A 4547.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4576,473,0 4 175237408 rs1553669 T C 3077.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3106,309,0 4 175414316 . G A 441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.505;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.455;SOR=0.42 GT:AD:DP:GQ:PL 0/1:16,20:36:99:470,0,455 4 175443156 rs1050145 C T 3304.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3333,326,0 4 175580191 rs4365704 G A 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=1.341;SOR=0.725 GT:AD:DP:GQ:PL 0/1:29,32:61:99:761,0,783 4 175598280 rs12648678 A G 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=5.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=2.269;SOR=0.36 GT:AD:DP:GQ:PL 0/1:66,62:128:99:1442,0,1641 4 175598334 rs6812439 T C 4021.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4050,428,0 4 175688138 rs7696263 A G 2157.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.37;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,61:61:99:1|1:175688138_A_G:2186,183,0 4 175688141 rs12651268 G A 662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.063;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.268;SOR=0.701 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,29:62:99:0|1:175688138_A_G:691,0,745 4 177049982 rs141438504 A G 1182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.235;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.117;SOR=0.695 GT:AD:DP:GQ:PL 0/1:57,45:102:99:1211,0,1396 4 177073026 rs4690661 G A 3567.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3596,357,0 4 177113764 rs6857056 A C 2847.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=1.261 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2876,297,0 4 177113779 rs12502935 T C 3006.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3035,305,0 4 177113956 rs2291244 A G 3949.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3978,380,0 4 177605081 rs3062984 CTCA C 3375.73 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.42;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:3413,229,0 4 178262613 rs35370036 GT G 1864.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.411;QD=20.95;ReadPosRankSum=0.498;SOR=0.593 GT:AD:DP:GQ:PL 1/1:7,82:103:99:1876,124,0 4 178262683 rs17676249 T C 3834.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=28.62;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3863,401,0 4 178262811 rs28618113 T C 2062.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2091,195,0 4 178274565 rs2048074 A G 3395.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3424,320,0 4 178274694 rs10007075 T G 3507.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.39;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3536,306,0 4 178274750 rs13112358 C T 4022.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4051,416,0 4 178274835 rs13112390 A C 4173.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4202,416,0 4 178281754 rs1876268 G A 3889.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3918,383,0 4 178357514 . TA T 114.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.058;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.77;ReadPosRankSum=0.94;SOR=0.589 GT:AD:DP:GQ:PL 0/1:50,15:71:99:152,0,1186 4 178359960 rs2228119 G C 2564.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2593,254,0 4 183650100 rs13340295 G A 2229.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2258,222,0 4 183652175 rs10866256 T C 4103.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=31.81;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4132,386,0 4 183664522 rs7654255 T C 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.339;SOR=0.675 GT:AD:DP:GQ:PL 0/1:103,87:190:99:1955,0,2685 4 183674597 rs71620945 A C 518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=0.707;SOR=0.327 GT:AD:DP:GQ:PL 0/1:33,21:54:99:547,0,902 4 184170025 rs907357 G A 4059.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=1.049 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4088,405,0 4 184201909 rs11132173 G A 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=1.089;SOR=0.457 GT:AD:DP:GQ:PL 0/1:54,65:119:99:1555,0,1332 4 184242959 rs6839940 C G 2387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.587;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-2.522;SOR=0.969 GT:AD:DP:GQ:PL 0/1:111,92:203:99:2416,0,2826 4 184243528 rs7688467 G A 5537.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.3 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5566,552,0 4 184367558 rs147291711 TCTG T 1710.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.59;ReadPosRankSum=-1.501;SOR=0.881 GT:AD:DP:GQ:PL 0/1:47,45:92:99:1748,0,1998 4 184426387 rs8872 C T 2599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=6.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.046;SOR=1.139 GT:AD:DP:GQ:PL 0/1:91,110:201:99:2628,0,2188 4 184426526 rs6552675 A G 4457.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4486,429,0 4 184596309 rs140871779 CT C 469.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=0.231;SOR=0.869 GT:AD:DP:GQ:PL 0/1:27,22:49:99:507,0,703 4 184600601 rs4241779 A G 2761.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2790,276,0 4 184612553 rs67383011 G C 963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.234;SOR=0.766 GT:AD:DP:GQ:PL 0/1:56,41:97:99:992,0,1463 4 184614874 rs4862234 C T 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.031;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=1.185;SOR=0.521 GT:AD:DP:GQ:PL 0/1:61,59:120:99:1491,0,1491 4 185012398 rs4479748 T C 3114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=4.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=1.37;SOR=0.49 GT:AD:DP:GQ:PL 0/1:155,135:290:99:3143,0,3757 4 185310218 rs1131553 C T 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-2.07;SOR=0.567 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1429,0,1745 4 185340725 . G GAAA 371.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.526;QD=26.55;ReadPosRankSum=-1.048;SOR=0.446 GT:AD:DP:GQ:PL 0/1:5,9:31:99:359,0,227 4 185553098 rs2705897 T G 1886.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1915,197,0 4 185578485 rs56194967 C T 969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-1.522;SOR=0.693 GT:AD:DP:GQ:PL 0/1:44,44:88:99:998,0,984 4 185587165 rs2463447 A G 2525.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2554,264,0 4 185622046 rs11728389 C T 2282.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.54;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2311,257,0 4 185686032 rs2292898 C T 4663.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.8;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4692,521,0 4 185687863 rs11727009 A G 2145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=7.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.121;SOR=0.406 GT:AD:DP:GQ:PL 0/1:97,97:194:99:2174,0,2211 4 185694877 . TA T 273.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.407;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.71;ReadPosRankSum=-2.025;SOR=0.685 GT:AD:DP:GQ:PL 0/1:77,24:112:99:311,0,1729 4 186111639 rs1133657 T C 5270.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5299,485,0 4 186112111 rs3108237 G A 3710.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3739,354,0 4 186112369 rs34825796 G GA 1618.73 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=1.812 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1656,182,0 4 186339584 rs10003160 A G 2088.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2117,207,0 4 186357523 rs7697970 C G 1510.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1539,141,0 4 186361876 rs4476640 A G 2019.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2048,203,0 4 186379371 rs7687202 G A 3654.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3683,368,0 4 186379899 rs35596415 G C 2414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.095;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.712;SOR=0.758 GT:AD:DP:GQ:PL 0/1:90,93:183:99:2443,0,2306 4 186380243 rs59319722 A C 1120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.765;SOR=0.616 GT:AD:DP:GQ:PL 0/1:48,42:90:99:1149,0,1273 4 186380295 rs36007437 A G 1212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.643;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.438;SOR=0.83 GT:AD:DP:GQ:PL 0/1:47,46:93:99:1241,0,1219 4 186380515 rs11132306 G A 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.39;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-1.315;SOR=0.528 GT:AD:DP:GQ:PL 0/1:64,49:113:99:1209,0,1621 4 186380846 rs7698680 A T 1342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-1.082;SOR=0.593 GT:AD:DP:GQ:PL 0/1:55,52:107:99:1371,0,1434 4 186381115 rs7699687 G T 1367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.76;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=5.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.912;SOR=0.68 GT:AD:DP:GQ:PL 0/1:53,61:114:99:1396,0,1381 4 186381165 rs7699724 G A 1268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.515;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=1.667;SOR=0.603 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1297,0,1268 4 186382206 rs11132309 A G 338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.72;MQRankSum=-1.493;QD=4.64;ReadPosRankSum=-0.298;SOR=0.687 GT:AD:DP:GQ:PL 0/1:51,22:73:99:367,0,1244 4 186423637 rs4635850 G A 1281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.659;SOR=0.96 GT:AD:DP:GQ:PL 0/1:74,54:128:99:1310,0,1927 4 186423655 rs12644280 G A 873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.65;ReadPosRankSum=-0.281;SOR=1.029 GT:AD:DP:GQ:PL 0/1:61,40:101:99:902,0,1701 4 186541301 rs61753946 A G 373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.137;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=6.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.79;ReadPosRankSum=1.678;SOR=1.29 GT:AD:DP:GQ:PL 0/1:31,17:48:99:402,0,779 4 186544879 rs61910743 G C 3001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.383;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.829;SOR=0.702 GT:AD:DP:GQ:PL 0/1:159,129:288:99:3030,0,3859 4 186599992 rs67212481 A T 297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.474;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=0.474;SOR=1.675 GT:AD:DP:GQ:PL 0/1:20,12:32:99:326,0,414 4 187004074 rs3775291 C T 1701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=1.094;SOR=0.627 GT:AD:DP:GQ:PL 0/1:106,71:177:99:1730,0,2934 4 187004217 rs3775290 C T 3358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-0.459;SOR=0.661 GT:AD:DP:GQ:PL 0/1:125,135:260:99:3387,0,3066 4 187074833 rs4862650 A G 3787.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.85;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3816,407,0 4 187077206 rs4862653 A G 4590.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.49;ReadPosRankSum=-0.567;SOR=0.264 GT:AD:DP:GQ:PL 1/1:1,166:167:99:4619,457,0 4 187078785 rs2276924 A G 4929.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.7;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,178:178:99:4958,532,0 4 187078819 rs2276923 C G 2111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.396;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=2.583;SOR=0.678 GT:AD:DP:GQ:PL 0/1:104,97:201:99:2140,0,2263 4 187078866 rs2276922 C T 1805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=1.387;SOR=0.536 GT:AD:DP:GQ:PL 0/1:80,79:159:99:1834,0,1984 4 187120211 rs13146272 C A 3620.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3649,366,0 4 187122304 rs3817184 C T 1716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.36;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.459;SOR=0.55 GT:AD:DP:GQ:PL 0/1:78,73:151:99:1745,0,2135 4 187122319 rs3736455 T G 5459.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5488,560,0 4 187173012 rs4253301 T G 2384.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2413,234,0 4 187201211 rs5974 A G 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.589;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.701;SOR=1.099 GT:AD:DP:GQ:PL 0/1:68,46:114:99:1141,0,1654 4 187205301 rs5970 T C 2785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.816;SOR=0.633 GT:AD:DP:GQ:PL 0/1:100,117:217:99:2814,0,2265 4 187516880 rs1298865 A G 1725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=4.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-0.226;SOR=0.813 GT:AD:DP:GQ:PL 0/1:71,78:149:99:1754,0,1734 4 187519206 rs1280097 C G 4613.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4642,479,0 4 187521037 rs10009030 C A 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.927;SOR=0.544 GT:AD:DP:GQ:PL 0/1:59,65:124:99:1415,0,1393 4 187525020 rs2637777 A C 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.11;SOR=0.721 GT:AD:DP:GQ:PL 0/1:60,71:131:99:1671,0,1362 4 187531022 rs28647489 A G 1111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.267;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.354;SOR=0.742 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1140,0,1202 4 187534363 rs2249916 G A 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.159;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=0.026;SOR=0.602 GT:AD:DP:GQ:PL 0/1:77,63:140:99:1453,0,1772 4 187538942 rs1280098 T G 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.792;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-2.536;SOR=0.644 GT:AD:DP:GQ:PL 0/1:126,114:240:99:2635,0,2759 4 187542755 rs28489116 T C 2444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.781;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.524;SOR=0.778 GT:AD:DP:GQ:PL 0/1:90,96:186:99:2473,0,2151 4 187557893 rs328418 T C 2544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.359;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=0.441;SOR=0.719 GT:AD:DP:GQ:PL 0/1:156,115:271:99:2573,0,3556 4 187584771 rs172903 C G 3186.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.27;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3215,279,0 4 187627792 rs11939575 T C 1995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=-1.395;QD=10.97;ReadPosRankSum=2.252;SOR=0.613 GT:AD:DP:GQ:PL 0/1:92,90:182:99:2024,0,2146 4 187628398 rs1877731 C G 3457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=0.492;SOR=0.591 GT:AD:DP:GQ:PL 0/1:98,128:226:99:3486,0,2629 4 187629128 . G A 1432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=4.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.709;SOR=0.908 GT:AD:DP:GQ:PL 0/1:67,55:122:99:1461,0,1869 4 187629140 rs367863 G C 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=-1.553;SOR=1.028 GT:AD:DP:GQ:PL 0/1:68,67:135:99:1888,0,1899 4 187629831 . G A 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.304;ClippingRankSum=0;DP=175;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.223;SOR=0.527 GT:AD:DP:GQ:PL 0/1:79,96:175:99:2389,0,2043 4 187630590 rs3733415 G A 1519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.152;SOR=0.759 GT:AD:DP:GQ:PL 0/1:85,66:151:99:1548,0,2197 4 187630989 rs17077740 C A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.113;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.757;SOR=1.111 GT:AD:DP:GQ:PL 0/1:80,82:162:99:2038,0,1951 4 189012728 rs2279550 G C 3093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=6.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.665;SOR=1.04 GT:AD:DP:GQ:PL 0/1:123,128:251:99:3122,0,3273 4 189018486 rs17883789 A G 1314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.496;SOR=0.786 GT:AD:DP:GQ:PL 0/1:49,57:106:99:1343,0,1089 4 189022420 rs4862860 A G 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.323;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=-0.158;SOR=0.555 GT:AD:DP:GQ:PL 0/1:26,29:55:99:780,0,617 4 189026524 rs13139393 C G 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.029;SOR=0.609 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1189,0,1273 4 189061036 rs76826594 C T 3378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.51;SOR=0.561 GT:AD:DP:GQ:PL 0/1:129,149:278:99:3407,0,2965 4 189061106 rs13131525 G A 1574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.078;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0;QD=10.94;ReadPosRankSum=0.804;SOR=0.636 GT:AD:DP:GQ:PL 0/1:81,63:144:99:1603,0,2458 4 189061675 rs113738610 A AT 926.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.169;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=-0.668;SOR=0.931 GT:AD:DP:GQ:PL 0/1:32,34:66:99:964,0,921 4 190876319 rs77450681 A T 136.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.684;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.5;MQ=55.34;MQRankSum=-8.635;QD=1.78;ReadPosRankSum=3.134;SOR=0.401 GT:AD:DP:GQ:PL 0/1:61,16:77:99:165,0,1565 4 190878589 . A G 56.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.79;MQRankSum=-3.726;QD=0.37;ReadPosRankSum=-1.318;SOR=0.606 GT:AD:DP:GQ:PL 0/1:130,22:152:85:85,0,4408 4 190878597 rs62345290 C T 1778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.25;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=50.85;MQRankSum=-10.867;QD=11.63;ReadPosRankSum=0.206;SOR=0.622 GT:AD:DP:GQ:PL 0/1:79,74:153:99:1807,0,1853 4 190878661 rs62345291 A T 1455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.935;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.5;MQ=49.54;MQRankSum=-9.943;QD=11.03;ReadPosRankSum=-0.152;SOR=0.565 GT:AD:DP:GQ:PL 0/1:56,76:132:99:1484,0,1215 5 163205 rs3810870 G C 8094.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8123,765,0 5 163260 rs29674 A C 11469.8 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.63;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,246:246:99:1|1:163260_A_C:11498,794,0 5 163266 rs3810867 C G 11574.8 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.35;SOR=0.762 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,267:267:99:1|1:163260_A_C:11603,809,0 5 163436 rs115239044 G A 2875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.472;SOR=0.657 GT:AD:DP:GQ:PL 0/1:131,122:253:99:2904,0,3360 5 171569 rs4956981 T C 5362.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.502 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5391,519,0 5 173200 rs6885136 C T 4695.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4724,501,0 5 174106 rs4956987 G A 6451.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6480,642,0 5 181660 rs7717970 T G 4526.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.184;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=11.362;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.39;ReadPosRankSum=0.89;SOR=2.042 GT:AD:DP:GQ:PL 1/1:2,152:154:99:4555,433,0 5 181730 rs12519352 C G 6128.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=1.418 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6157,642,0 5 181762 rs11133847 A G 5679.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5708,576,0 5 192152 rs140234009 G A 9156.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,279:279:99:9185,837,0 5 230980 rs2288461 A G 5501.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5530,522,0 5 231111 rs1126417 T C 4563.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=30.63;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4592,447,0 5 311478 rs2244029 T C 3522.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3551,354,0 5 434722 rs34453673 G C 11336.8 PASS AC=2;AF=1;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.3;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,351:351:99:11365,1053,0 5 442571 rs56146525 A C 5180.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.21;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5209,468,0 5 475104 rs2247114 A G 6333.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6362,630,0 5 476353 rs2230437 C T 4873.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4902,453,0 5 482186 rs9885312 C G 3083.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=40.58;SOR=4.091 GT:AD:DP:GQ:PL 1/1:0,76:76:99:3112,228,0 5 482653 rs3777230 T C 3251.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=1.563 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3280,303,0 5 483564 rs56098739 A G 3648.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3677,348,0 5 485259 rs55989315 G T 2955.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2984,290,0 5 665280 rs1697963 T C 8833.77 PASS AC=2;AF=1;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,304:304:99:8862,912,0 5 666244 rs149807312 G GGGGCACAGGCGACTTA 5933.73 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=45.3;SOR=1.918 GT:AD:DP:GQ:PL 1/1:0,131:131:99:5971,394,0 5 678062 rs450628 A G 9425.77 PASS AC=2;AF=1;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,338:338:99:9454,1013,0 5 766939 rs4957103 G A 7763.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=28.44;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,273:273:99:7792,818,0 5 1009691 rs12173000 G A 3914.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=28.16;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3943,416,0 5 1057782 rs12108965 T C 4654.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4683,497,0 5 1065399 rs737154 C T 3095.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.945 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3124,294,0 5 1081767 rs4526148 C T 5933.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5962,624,0 5 1085604 rs11133624 C A 5809.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5838,567,0 5 1216775 rs4975629 A G 10990.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.939;ClippingRankSum=0;DB;DP=371;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.62;ReadPosRankSum=-0.04;SOR=1.065 GT:AD:DP:GQ:PL 1/1:2,369:371:99:11019,1062,0 5 1225613 rs7704058 G A 8486.77 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,304:304:99:8515,911,0 5 1225626 rs7728667 T A 8382.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.13;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,298:298:99:8411,892,0 5 1225676 rs33978774 C T 3184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=5.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=0.567;SOR=0.641 GT:AD:DP:GQ:PL 0/1:96,131:227:99:3213,0,2226 5 1225687 rs7705355 C T 10287.8 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.12;SOR=0.729 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,228:228:99:1|1:1225687_C_T:10316,693,0 5 1225688 rs7728814 T C 10287.8 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.73;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,230:230:99:1|1:1225687_C_T:10316,693,0 5 1225703 rs7724858 A G 7492.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7521,725,0 5 1232491 rs4975623 G C 6768.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6797,676,0 5 1240757 rs7447815 C G 2587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.021;SOR=0.8 GT:AD:DP:GQ:PL 0/1:130,115:245:99:2616,0,3118 5 1244425 rs4073918 C T 4799.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.007;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.09;ReadPosRankSum=-0.907;SOR=0.951 GT:AD:DP:GQ:PL 1/1:2,163:165:99:4828,444,0 5 1294166 rs61748181 C T 3957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.661;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.428;SOR=0.676 GT:AD:DP:GQ:PL 0/1:169,161:330:99:3986,0,4726 5 1320722 rs402710 C T 1453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.085;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-1.459;SOR=0.762 GT:AD:DP:GQ:PL 0/1:54,65:119:99:1482,0,1106 5 1334507 rs5865369 GA G 427.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.07;ReadPosRankSum=1.538;SOR=0.478 GT:AD:DP:GQ:PL 0/1:29,24:53:99:465,0,670 5 1344458 rs31490 G A 743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-1.071;SOR=0.985 GT:AD:DP:GQ:PL 0/1:33,31:64:99:772,0,760 5 1409127 rs429699 T C 2887.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2916,299,0 5 1467004 rs35452723 A G 3228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.037;SOR=0.591 GT:AD:DP:GQ:PL 0/1:115,135:250:99:3257,0,2733 5 1799001 rs114776273 T G 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=5.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=-1.052;SOR=0.398 GT:AD:DP:GQ:PL 0/1:101,71:172:99:1616,0,2671 5 1878440 rs1689717 C T 5519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.761;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=0.627;SOR=0.727 GT:AD:DP:GQ:PL 0/1:187,225:412:99:5548,0,4365 5 1880891 rs2232376 C T 1448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.76;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=1.023;SOR=0.757 GT:AD:DP:GQ:PL 0/1:47,61:108:99:1477,0,1193 5 2748439 rs112775132 G C 2787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.937;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=5.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.34;ReadPosRankSum=-0.401;SOR=1.12 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,75:152:99:0|1:2748427_C_G:2816,0,4650 5 2755191 rs76652220 G C 2924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.028;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.898;SOR=0.503 GT:AD:DP:GQ:PL 0/1:103,129:232:99:2953,0,2475 5 2755485 rs62333235 C T 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=7.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=0.322;SOR=1.151 GT:AD:DP:GQ:PL 0/1:45,54:99:99:1345,0,1027 5 3600334 rs844154 T C 8777.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8806,869,0 5 3600709 . C T 864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.552;SOR=0.519 GT:AD:DP:GQ:PL 0/1:40,40:80:99:893,0,1012 5 5140632 rs270208 T C 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.987;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=7.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.17;ReadPosRankSum=-1.844;SOR=0.347 GT:AD:DP:GQ:PL 0/1:69,81:150:99:2303,0,1632 5 5146223 rs1871468 G C 671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.377;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.396;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-0.532;SOR=1.14 GT:AD:DP:GQ:PL 0/1:54,27:81:99:700,0,1421 5 5146335 rs2086310 C G 1989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.513;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=1.793;SOR=0.782 GT:AD:DP:GQ:PL 0/1:106,83:189:99:2018,0,2592 5 5146395 rs1863968 A G 7785.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7814,795,0 5 5200281 rs6555335 C T 1972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.058;QD=11.21;ReadPosRankSum=0.111;SOR=0.615 GT:AD:DP:GQ:PL 0/1:92,84:176:99:2001,0,2263 5 5239921 rs11742341 C T 2877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.408;SOR=0.914 GT:AD:DP:GQ:PL 0/1:116,118:234:99:2906,0,2831 5 5240002 rs11742370 C A 2668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.216;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.535;SOR=0.71 GT:AD:DP:GQ:PL 0/1:109,116:225:99:2697,0,2522 5 5262766 rs34433845 G A 2288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.622;SOR=0.542 GT:AD:DP:GQ:PL 0/1:79,103:182:99:2317,0,1912 5 5460569 rs2578565 C T 2719.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.775 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2748,264,0 5 5460619 rs2619844 G C 3649.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3678,357,0 5 5462148 rs2578500 G A 4070.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4099,418,0 5 6378614 rs7723985 G C 5092.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.07;SOR=1.349 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5121,462,0 5 6600150 rs3822434 G A 1751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.691;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-0.452;SOR=0.663 GT:AD:DP:GQ:PL 0/1:95,71:166:99:1780,0,2343 5 6605532 rs2303707 C A 3265.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3294,339,0 5 6623405 rs368018490 GA G 84.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.37;ReadPosRankSum=0.202;SOR=0.646 GT:AD:DP:GQ:PL 0/1:50,12:71:99:122,0,1186 5 6632875 rs10076470 G A 7905.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.2;SOR=0.974 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,183:183:99:1|1:6632875_G_A:7934,554,0 5 6633042 rs10062086 C T 7508.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7537,762,0 5 6633779 rs248793 C G 7517.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7546,717,0 5 6651970 rs3822430 A G 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-0.601;SOR=0.751 GT:AD:DP:GQ:PL 0/1:67,80:147:99:1869,0,1507 5 6652009 rs8192186 G A 4601.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4630,485,0 5 6656210 rs3736316 G A 2896.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.25;QD=29.56;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2925,294,0 5 6742588 rs28381377 A G 480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.713;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=1.415;SOR=0.765 GT:AD:DP:GQ:PL 0/1:25,20:45:99:509,0,641 5 6748659 rs274681 T C 3988.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4017,402,0 5 6753013 rs28381429 C T 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=5.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=1.048;SOR=0.372 GT:AD:DP:GQ:PL 0/1:61,76:137:99:1783,0,1614 5 7743787 rs62342477 C T 4125.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.51;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4154,449,0 5 7835555 rs6883562 C G 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.929;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.005;SOR=0.791 GT:AD:DP:GQ:PL 0/1:28,31:59:99:803,0,625 5 7835616 rs34574678 G GA 231.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.44;ReadPosRankSum=-1.258;SOR=0.751 GT:AD:DP:GQ:PL 0/1:22,14:38:99:269,0,481 5 7862926 rs3733784 T C 1218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=1.449;SOR=0.892 GT:AD:DP:GQ:PL 0/1:30,49:79:99:1247,0,643 5 7866106 rs17184211 A T 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.399;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-1.459;SOR=0.705 GT:AD:DP:GQ:PL 0/1:20,29:49:99:692,0,410 5 7866967 rs162030 G C 2165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-1.411;SOR=0.789 GT:AD:DP:GQ:PL 0/1:90,88:178:99:2194,0,2298 5 7868030 rs2966952 T C 2167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.038;SOR=0.629 GT:AD:DP:GQ:PL 0/1:89,92:181:99:2196,0,2056 5 7870973 rs1801394 A G 2028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.183;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.348;SOR=0.696 GT:AD:DP:GQ:PL 0/1:96,90:186:99:2057,0,2099 5 7878179 rs1532268 C T 3448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.63;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.189;SOR=0.905 GT:AD:DP:GQ:PL 0/1:118,140:258:99:3477,0,2745 5 7885794 . T TTC 1144.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.5;MQ=61.21;MQRankSum=0;QD=17.61;ReadPosRankSum=1.146;SOR=1.324 GT:AD:DP:GQ:PL 0/1:35,30:70:99:1182,0,1268 5 7897319 rs1802059 G A 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=0.723;SOR=0.678 GT:AD:DP:GQ:PL 0/1:74,57:131:99:1275,0,1850 5 9043142 rs3834271 T TA 550.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.869;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=1.059;SOR=0.668 GT:AD:DP:GQ:PL 0/1:40,29:69:99:588,0,796 5 9154659 rs1806151 G C 5907.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5936,579,0 5 10227548 rs2136197 C A 2998.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3027,306,0 5 10239278 rs2252505 C T 3206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.546;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.56;SOR=0.718 GT:AD:DP:GQ:PL 0/1:126,136:262:99:3235,0,2806 5 10250443 rs2578618 T C 5933.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.1;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5962,522,0 5 10254817 rs2578617 A G 2095.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2124,216,0 5 10256161 rs1042392 T C 3266.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3295,324,0 5 10262740 rs2578642 C A 3289.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3318,342,0 5 10394911 . A AT 103.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.36;ReadPosRankSum=0.034;SOR=1.119 GT:AD:DP:GQ:PL 0/1:32,12:64:99:141,0,617 5 10397473 . CT C 56.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.77;ReadPosRankSum=-1.157;SOR=1.192 GT:AD:DP:GQ:PL 0/1:24,8:35:94:94,0,591 5 10564846 rs814576 C T 9916.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9945,952,0 5 10638180 rs11745612 T C 6104.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6133,618,0 5 10649784 rs113222960 G A 4058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.217;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-1.262;SOR=0.84 GT:AD:DP:GQ:PL 0/1:201,166:367:99:4087,0,5200 5 10650150 rs56969869 A G 3880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=3.329;QD=13.62;ReadPosRankSum=-0.563;SOR=0.67 GT:AD:DP:GQ:PL 0/1:128,157:285:99:3909,0,2978 5 10761182 rs267927 A G 4909.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4938,495,0 5 13701525 rs3734111 T C 4801.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=43.26;SOR=1.295 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,111:111:99:1|1:13701525_T_C:4830,334,0 5 13701536 rs3734110 T C 4610.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=44.76;SOR=1.477 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,103:103:99:1|1:13701525_T_C:4639,313,0 5 13714740 rs30175 G A 3792.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3821,389,0 5 13719022 rs30169 T G 3478.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.149 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3507,342,0 5 13719089 rs30168 G A 3857.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.98;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3886,428,0 5 13762972 rs6554812 T C 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.802;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=1.491;SOR=0.366 GT:AD:DP:GQ:PL 0/1:77,67:144:99:1709,0,2002 5 13810149 rs35732567 G A 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=3.86;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.366;SOR=0.454 GT:AD:DP:GQ:PL 0/1:72,85:157:99:2005,0,1733 5 13811775 rs10078391 T C 1352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.962;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=3.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-1.789;SOR=1.019 GT:AD:DP:GQ:PL 0/1:72,57:129:99:1381,0,1629 5 13829608 rs1348691 G A 1573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.184;SOR=0.746 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1602,0,1513 5 13829799 rs1348689 G A 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=0.956;SOR=0.653 GT:AD:DP:GQ:PL 0/1:58,62:120:99:1555,0,1489 5 13842027 . CA C 38.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=5.53;ReadPosRankSum=1.668;SOR=1.981 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,5:7:53:0|1:13842027_CA_C:76,0,53 5 13845045 rs10041113 G A 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.14;QD=10.32;ReadPosRankSum=0.926;SOR=1.038 GT:AD:DP:GQ:PL 0/1:63,50:113:99:1194,0,1575 5 13845107 rs4429853 A G 823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=1.174;SOR=0.446 GT:AD:DP:GQ:PL 0/1:33,34:67:99:852,0,862 5 13850750 rs6554820 A G 848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.525;SOR=0.572 GT:AD:DP:GQ:PL 0/1:33,33:66:99:877,0,946 5 13864728 rs6554827 C A 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.665;SOR=0.849 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1581,0,1674 5 13865980 rs7703349 T C 880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=0.842;SOR=0.727 GT:AD:DP:GQ:PL 0/1:48,41:89:99:909,0,1156 5 13868103 rs35398031 TA T 378.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.078;QD=7.73;ReadPosRankSum=-0.651;SOR=0.598 GT:AD:DP:GQ:PL 0/1:27,22:52:99:416,0,646 5 13882841 rs10057007 A G 791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=0.94;SOR=0.425 GT:AD:DP:GQ:PL 0/1:50,41:91:99:820,0,1144 5 13886244 rs201639682 CAAA C,CA 2415.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=35.01;SOR=1.075 GT:AD:DP:GQ:PL 1/2:0,38,31:84:99:2453,672,549,895,0,690 5 13894894 rs4701997 T A 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.221;SOR=0.6 GT:AD:DP:GQ:PL 0/1:62,65:127:99:1487,0,1516 5 13900345 rs1445823 A G 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.889;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.223;SOR=1.052 GT:AD:DP:GQ:PL 0/1:61,63:124:99:1563,0,1396 5 13931205 rs1530497 G C 2327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.356;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=7.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=1.037;SOR=0.489 GT:AD:DP:GQ:PL 0/1:90,93:183:99:2356,0,2230 5 13931340 rs1530496 C T 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.524;SOR=0.73 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1607,0,1566 5 13944512 rs339445 A C 3785.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.217;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.68;ReadPosRankSum=-0.387;SOR=0.299 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3814,385,0 5 14316642 rs55920001 G A 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.723;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-0.903;SOR=0.79 GT:AD:DP:GQ:PL 0/1:103,80:183:99:1863,0,2520 5 14330940 rs2277045 T C 2209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.479;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.072;SOR=0.542 GT:AD:DP:GQ:PL 0/1:95,93:188:99:2238,0,2142 5 14368975 rs13189406 C T 2335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.595;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=3.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=-0.118;SOR=0.938 GT:AD:DP:GQ:PL 0/1:155,99:254:99:2364,0,3782 5 14397238 rs30774 T C 773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.16;ReadPosRankSum=0.099;SOR=0.605 GT:AD:DP:GQ:PL 0/1:69,39:108:99:802,0,1675 5 14420027 rs30612 A C 3955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.563;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=7.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.312;SOR=0.871 GT:AD:DP:GQ:PL 0/1:187,159:346:99:3984,0,4465 5 14485161 . G GT 131.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.18;ReadPosRankSum=-2.003;SOR=0.954 GT:AD:DP:GQ:PL 0/1:91,21:122:99:169,0,1873 5 14610309 rs16903574 C G 1108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=1.625;SOR=0.608 GT:AD:DP:GQ:PL 0/1:57,47:104:99:1137,0,1533 5 14769103 rs17251667 G A 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.393;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.364;SOR=0.792 GT:AD:DP:GQ:PL 0/1:74,88:162:99:2113,0,1600 5 16477751 rs162850 C A 2333.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=1.339 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2362,242,0 5 16478200 rs162848 G A 1727.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1756,171,0 5 16508674 rs332811 A G 1245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.795;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=1.099;SOR=1.022 GT:AD:DP:GQ:PL 0/1:38,46:84:99:1274,0,900 5 16617099 rs35003 A G 4827.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=1.488 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4856,456,0 5 16670618 rs27431 C T 924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.444;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.71;ReadPosRankSum=1.178;SOR=0.926 GT:AD:DP:GQ:PL 0/1:76,44:120:99:953,0,1772 5 16673975 rs25901 C G 3905.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.55;SOR=1.71 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3934,360,0 5 16681966 rs399833 G A 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.706;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.188;SOR=0.609 GT:AD:DP:GQ:PL 0/1:70,64:134:99:1491,0,1917 5 16711365 rs3214558 CA C 953.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=1.49;SOR=0.752 GT:AD:DP:GQ:PL 0/1:50,52:102:99:991,0,1081 5 16762646 rs31511 T C 3085.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3114,312,0 5 16769273 rs11750538 G A 4987.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5016,527,0 5 16877701 rs7710976 C G 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.56;SOR=0.42 GT:AD:DP:GQ:PL 0/1:43,48:91:99:1103,0,1156 5 19591174 rs17285716 A G 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.58;ReadPosRankSum=0.41;SOR=0.641 GT:AD:DP:GQ:PL 0/1:28,44:72:99:1150,0,687 5 19721490 rs12187552 T C 3191.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3220,327,0 5 21755685 rs16888487 A G 1018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.819;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.274;SOR=0.845 GT:AD:DP:GQ:PL 0/1:45,44:89:99:1047,0,990 5 22078584 rs4371716 C T 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-1.86;SOR=0.941 GT:AD:DP:GQ:PL 0/1:70,63:133:99:1411,0,1636 5 24488120 rs141645081 G A 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.83;ReadPosRankSum=0.939;SOR=0.665 GT:AD:DP:GQ:PL 0/1:72,43:115:99:929,0,1992 5 26988328 rs2288466 G A 2027.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.04;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2056,224,0 5 26988424 rs2288467 T C 1081.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.9;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1110,93,0 5 31302288 rs2287582 C T 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=0.917;SOR=0.562 GT:AD:DP:GQ:PL 0/1:105,69:174:99:1442,0,2492 5 31317494 rs2302904 C T 577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.516;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.11;SOR=0.922 GT:AD:DP:GQ:PL 0/1:23,26:49:99:606,0,504 5 31317529 rs2302903 A G 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.743;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.816;SOR=0.684 GT:AD:DP:GQ:PL 0/1:33,35:68:99:843,0,747 5 31317952 rs2229575 T C 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.215;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.65;SOR=0.598 GT:AD:DP:GQ:PL 0/1:106,80:186:99:1809,0,2549 5 31483753 rs11341915 GA G 904.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.833;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=0.852;QD=17.4;ReadPosRankSum=1.43;SOR=0.557 GT:AD:DP:GQ:PL 0/1:9,43:64:19:912,0,19 5 31515657 rs55656741 G A 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.354;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-0.113;SOR=0.635 GT:AD:DP:GQ:PL 0/1:49,41:90:99:888,0,1082 5 31538692 rs17410000 A C 1423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=0.18;SOR=0.553 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1452,0,1695 5 32058115 rs151861 A G 4605.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4634,465,0 5 32379210 rs1862636 G A 3714.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3743,390,0 5 32400266 rs1051489 A G 1761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.058;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.013;SOR=0.877 GT:AD:DP:GQ:PL 0/1:74,69:143:99:1790,0,1672 5 32403346 rs4867440 C T 5557.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5586,560,0 5 32591804 . AT A 428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.446;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.82;ReadPosRankSum=-1.618;SOR=0.721 GT:AD:DP:GQ:PL 0/1:55,34:123:99:457,0,1030 5 33461355 rs2270905 G A 2625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.335;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-1.223;SOR=0.569 GT:AD:DP:GQ:PL 0/1:107,110:217:99:2654,0,2439 5 33535060 rs25754 G A 4865.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4894,503,0 5 33549387 rs61748195 G A 3016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.434;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-1.657;SOR=0.8 GT:AD:DP:GQ:PL 0/1:151,135:286:99:3045,0,3529 5 33576602 rs3813474 A G 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.043;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-1.711;SOR=0.722 GT:AD:DP:GQ:PL 0/1:130,97:227:99:2489,0,3135 5 33649807 rs4504387 C A 2660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.06;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=-2.135;SOR=0.56 GT:AD:DP:GQ:PL 0/1:80,112:192:99:2689,0,2034 5 33951693 rs16891982 C G 4321.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4350,431,0 5 33954511 rs2287949 T C 6051.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6080,641,0 5 33989518 rs2278008 C T 4780.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4809,474,0 5 33998883 rs2287939 A G 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.083;SOR=0.44 GT:AD:DP:GQ:PL 0/1:67,69:136:99:1616,0,1713 5 34004707 rs10941112 C T 1632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.402;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=-0.835;SOR=0.68 GT:AD:DP:GQ:PL 0/1:118,73:191:99:1661,0,2818 5 34008100 rs3195676 C T 2583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=61;MQRankSum=4.265;QD=12.67;ReadPosRankSum=1.786;SOR=0.772 GT:AD:DP:GQ:PL 0/1:95,109:204:99:2612,0,2394 5 34811131 rs35607113 G A 825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.301;SOR=0.793 GT:AD:DP:GQ:PL 0/1:36,38:74:99:854,0,895 5 34818976 rs5867249 G GT 687.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=1.774;SOR=0.862 GT:AD:DP:GQ:PL 0/1:33,32:74:99:725,0,567 5 34824555 rs1048944 G T 1786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=-0.381;SOR=0.369 GT:AD:DP:GQ:PL 0/1:59,67:126:99:1815,0,1601 5 34830788 rs17523026 C T 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=4.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=1.225;SOR=1.225 GT:AD:DP:GQ:PL 0/1:34,39:73:99:921,0,849 5 34840841 rs6451173 A G 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.164;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.609;SOR=0.894 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1138,0,1375 5 34925312 . CT C 239.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.958;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.87;ReadPosRankSum=2.367;SOR=0.671 GT:AD:DP:GQ:PL 0/1:44,18:85:99:277,0,958 5 35010138 rs466067 A G 4874.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4903,471,0 5 35033605 rs180749 G A 3666.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3695,401,0 5 35039437 rs2279651 A G 3571.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3600,363,0 5 35039486 rs37370 C T 4715.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4744,506,0 5 35641582 rs6897513 A C 2788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.81;ReadPosRankSum=0.981;SOR=0.63 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,71:134:99:0|1:35641582_A_C:2817,0,3157 5 35641591 rs34307272 G A 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.02;ReadPosRankSum=-0.483;SOR=0.602 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,74:135:99:0|1:35641582_A_C:2866,0,3083 5 35644621 rs7706444 T C 2956.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=1.368 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2985,303,0 5 35654711 rs2270558 C T 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.106;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=0.538;SOR=0.72 GT:AD:DP:GQ:PL 0/1:82,64:146:99:1422,0,1946 5 35659239 rs16902381 G A 1756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-1.92;SOR=0.791 GT:AD:DP:GQ:PL 0/1:102,84:186:99:1785,0,2380 5 35692775 rs7710284 T A 932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.461;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.502;SOR=0.822 GT:AD:DP:GQ:PL 0/1:55,40:95:99:961,0,1239 5 35700598 rs6451206 T C 3333.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.365 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3362,326,0 5 35709095 rs13170082 C T 3980.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.27;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4009,436,0 5 35709184 rs13170390 G C 5073.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5102,519,0 5 35713007 rs10073537 T G 3004.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3033,299,0 5 35727857 rs115170604 G A 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.284;SOR=0.616 GT:AD:DP:GQ:PL 0/1:51,73:124:99:1727,0,1232 5 35753715 rs11957963 T C 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.561;SOR=0.648 GT:AD:DP:GQ:PL 0/1:96,98:194:99:2325,0,2160 5 35910529 rs1445898 C T 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.158;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=1.227;SOR=0.891 GT:AD:DP:GQ:PL 0/1:83,47:130:99:1021,0,1856 5 35921069 rs6859892 T C 4298.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4327,407,0 5 35954588 rs700164 C T 2219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.33;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=7.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.856;SOR=0.345 GT:AD:DP:GQ:PL 0/1:78,103:181:99:2248,0,1958 5 36142589 rs267764 T A 1771.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1800,204,0 5 36142648 rs12658867 A G 2701.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2730,276,0 5 36143392 rs267766 C T 2663.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2692,282,0 5 36260976 rs6881086 T A 527.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,17:17:51:556,51,0 5 36269551 rs1035480 G C 2180.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2209,225,0 5 36301420 rs884694 G T 2042.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2071,204,0 5 36985303 rs3822471 A G 2347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.422;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=5.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.276;SOR=1.069 GT:AD:DP:GQ:PL 0/1:113,89:202:99:2376,0,2799 5 37001074 rs78827246 A G 1114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.027;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.16;ReadPosRankSum=2.224;SOR=0.859 GT:AD:DP:GQ:PL 0/1:32,37:69:99:1143,0,827 5 37139474 rs34646696 TA T 120.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.422;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.89;ReadPosRankSum=1.587;SOR=1.524 GT:AD:DP:GQ:PL 0/1:21,10:31:99:158,0,478 5 37173930 rs10076911 A C 1511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.313;SOR=0.804 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1540,0,1657 5 37176091 rs10805625 A G 583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.752;SOR=0.767 GT:AD:DP:GQ:PL 0/1:29,25:54:99:612,0,684 5 37182902 rs75589774 G A 958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=1.148;SOR=0.384 GT:AD:DP:GQ:PL 0/1:34,40:74:99:987,0,874 5 37247700 rs6876576 G A 3003.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3032,302,0 5 37333727 rs150594 A G 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=-0.009;SOR=1.067 GT:AD:DP:GQ:PL 0/1:39,57:96:99:1416,0,896 5 37364443 rs217852 C T 2609.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2638,273,0 5 38370537 rs1465567 T C 3709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.964;SOR=0.754 GT:AD:DP:GQ:PL 0/1:117,162:279:99:3738,0,2588 5 38407060 rs138323038 C T 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.123;QD=10.03;ReadPosRankSum=-1.572;SOR=0.742 GT:AD:DP:GQ:PL 0/1:128,103:231:99:2346,0,3090 5 38486065 rs3110234 C T 1134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.13;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.11;SOR=0.534 GT:AD:DP:GQ:PL 0/1:41,50:91:99:1163,0,1048 5 38528951 rs34759137 GAC G 733.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.783;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=0.84;QD=20.96;ReadPosRankSum=-0.222;SOR=0.502 GT:AD:DP:GQ:PL 0/1:10,25:42:99:771,0,206 5 38950776 rs2115949 G A 2304.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2333,222,0 5 38953665 rs72534668 G GA 978.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.914;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.47;ReadPosRankSum=1.15;SOR=1.329 GT:AD:DP:GQ:PL 1/1:2,38:40:70:1016,70,0 5 38958750 rs6868087 A G 1640.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1669,159,0 5 39134295 rs4957318 C T 1383.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1412,137,0 5 39342308 rs476569 C T 1557.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.33;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1586,171,0 5 39364474 rs6864541 A G 494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.754;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=0.572;SOR=1.163 GT:AD:DP:GQ:PL 0/1:20,20:40:99:523,0,438 5 39376840 rs61742957 G A 2355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=1.63;SOR=0.705 GT:AD:DP:GQ:PL 0/1:86,95:181:99:2384,0,2133 5 39376858 rs61744160 C A 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=0.851;SOR=0.723 GT:AD:DP:GQ:PL 0/1:85,95:180:99:2388,0,2105 5 39383257 rs34507990 T C 1484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.367;SOR=0.426 GT:AD:DP:GQ:PL 0/1:72,66:138:99:1513,0,1827 5 39394408 rs34529705 T C 1324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.35;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.09;SOR=0.846 GT:AD:DP:GQ:PL 0/1:61,57:118:99:1353,0,1287 5 40746885 rs3805497 A T 2469.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2498,246,0 5 40777531 rs144157386 T TTA 4012.73 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=1.584 GT:AD:DP:GQ:PL 1/1:0,90:90:99:4050,271,0 5 40852451 rs188934 C G 4694.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4723,453,0 5 40964852 rs13157656 A C 1347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.858;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.98;ReadPosRankSum=-1.172;SOR=1.067 GT:AD:DP:GQ:PL 0/1:42,48:90:99:1376,0,1004 5 40981689 rs1061429 C A 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.27;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-1.137;SOR=0.712 GT:AD:DP:GQ:PL 0/1:76,54:130:99:1201,0,1971 5 40998196 rs704040 T C 927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.916;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=0.03;SOR=0.678 GT:AD:DP:GQ:PL 0/1:63,38:101:99:956,0,1466 5 40998235 rs722575 C T 761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.846;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=1.996;SOR=0.647 GT:AD:DP:GQ:PL 0/1:57,35:92:99:790,0,1393 5 40999900 rs1376175 T A 1183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.417;SOR=0.541 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1212,0,1147 5 41000343 rs1001420 G A 2090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-0.033;SOR=0.761 GT:AD:DP:GQ:PL 0/1:113,100:213:99:2119,0,2742 5 41000851 . C CA 2510.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0;DP=206;ExcessHet=3.0103;FS=3.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=1.026;SOR=0.675 GT:AD:DP:GQ:PL 0/1:90,111:201:99:2548,0,1728 5 41008780 rs2271704 A G 2856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.461;SOR=0.853 GT:AD:DP:GQ:PL 0/1:106,124:230:99:2885,0,2489 5 41033931 . C CTATT 539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-0.518;QD=6;ReadPosRankSum=2.22;SOR=0.5 GT:AD:DP:GQ:PL 0/1:71,19:92:99:568,0,2416 5 41039000 rs325849 A G 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.32;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.602;SOR=1.021 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1432,0,1511 5 41042204 rs16870720 T A 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.731;SOR=0.646 GT:AD:DP:GQ:PL 0/1:39,52:91:99:1150,0,799 5 41042284 rs325854 G T 678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.096;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=4.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=0.437;SOR=1.27 GT:AD:DP:GQ:PL 0/1:52,28:80:99:707,0,1212 5 41045835 rs6864243 C G 1022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.518;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.388;SOR=0.613 GT:AD:DP:GQ:PL 0/1:45,43:88:99:1051,0,998 5 41049389 rs325863 T C 2418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.12;ReadPosRankSum=0.982;SOR=0.583 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,66:160:99:0|1:41049389_T_C:2447,0,4817 5 41049397 rs325864 C T 2461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.42;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=-0.31;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,68:162:99:0|1:41049389_T_C:2490,0,4811 5 41061716 rs865093 A G 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.02;SOR=0.811 GT:AD:DP:GQ:PL 0/1:78,85:163:99:1837,0,1806 5 41069852 rs13174484 T C 833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.707;SOR=0.686 GT:AD:DP:GQ:PL 0/1:29,36:65:99:862,0,627 5 41158863 rs6866352 G A 1737.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1766,182,0 5 41199959 rs1801033 G T 1673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.536;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.961;SOR=0.547 GT:AD:DP:GQ:PL 0/1:74,72:146:99:1702,0,1712 5 41382647 rs76547469 A T 827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.291;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=-0.096;SOR=0.963 GT:AD:DP:GQ:PL 0/1:62,36:98:99:856,0,1559 5 42700044 rs6179 A G 2587.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2616,264,0 5 42719239 rs6180 A C 4154.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.139;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.041;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.05;ReadPosRankSum=-0.546;SOR=0.268 GT:AD:DP:GQ:PL 1/1:1,142:143:99:4183,419,0 5 43039793 rs1054428 T C 3018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.09;SOR=0.605 GT:AD:DP:GQ:PL 0/1:128,122:250:99:3047,0,3337 5 43161337 rs903391 A G 1431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.652;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.812;SOR=0.968 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,55:107:99:1|0:43161317_T_C:1460,0,1857 5 43175040 rs115363430 T G 2831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.527;SOR=0.569 GT:AD:DP:GQ:PL 0/1:133,118:251:99:2860,0,3334 5 43297144 rs3733769 A G 1232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.5;ReadPosRankSum=-2.011;SOR=0.76 GT:AD:DP:GQ:PL 0/1:36,49:85:99:1261,0,883 5 43492978 rs10039298 G A 2315.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.164 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2344,225,0 5 43505993 rs7710628 A G 2199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.262;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.05;ReadPosRankSum=-0.505;SOR=0.582 GT:AD:DP:GQ:PL 0/1:49,80:129:99:2228,0,1251 5 43509348 rs6872851 T A 3144.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=29.39;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3173,320,0 5 43535754 rs6869933 G C 466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.784;SOR=0.518 GT:AD:DP:GQ:PL 0/1:24,21:45:99:495,0,660 5 43609343 rs10057103 C T 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-3.116;SOR=0.61 GT:AD:DP:GQ:PL 0/1:67,50:117:99:1146,0,1754 5 45267183 rs56154381 T TA 1139.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.497;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=0.147;SOR=0.892 GT:AD:DP:GQ:PL 0/1:43,38:81:99:1177,0,1367 5 50045967 rs2442107 G T 1659.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.238 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1688,171,0 5 50057729 rs282547 G A 1908.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.27;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1937,210,0 5 50122645 rs35290606 GT G 57.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.684;QD=1.31;ReadPosRankSum=-0.448;SOR=1.022 GT:AD:DP:GQ:PL 0/1:32,12:44:95:95,0,701 5 50685505 rs2303751 A G 2436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.321;SOR=0.867 GT:AD:DP:GQ:PL 0/1:119,107:226:99:2465,0,2724 5 52096889 rs1499280 C A 4390.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4419,426,0 5 52157374 rs2447867 T C 2497.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2526,268,0 5 52193287 rs1531545 C T 511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.178;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-0.701;QD=6.56;ReadPosRankSum=-0.452;SOR=0.712 GT:AD:DP:GQ:PL 0/1:51,27:78:99:540,0,1211 5 52248291 rs1054085 T C 1073.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1102,99,0 5 52344610 rs1421933 A G 2990.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3019,278,0 5 52347369 rs1126643 C T 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.527;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.635;SOR=0.729 GT:AD:DP:GQ:PL 0/1:59,51:110:99:1175,0,1426 5 52351413 rs1062535 G A 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.27;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=1.026;SOR=0.866 GT:AD:DP:GQ:PL 0/1:67,46:113:99:1021,0,1619 5 52355854 rs2303127 T C 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.415;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.105;SOR=0.922 GT:AD:DP:GQ:PL 0/1:57,39:96:99:952,0,1382 5 52379277 rs2303122 C T 441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.854;SOR=0.916 GT:AD:DP:GQ:PL 0/1:17,21:38:99:470,0,430 5 52856504 rs2279516 G C 2431.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.86;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2460,222,0 5 52942083 rs31304 A C 3314.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.06;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.81;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.33;ReadPosRankSum=0.537;SOR=0.825 GT:AD:DP:GQ:PL 1/1:1,112:113:99:3343,328,0 5 52942197 rs31303 A G 3633.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3662,348,0 5 53606295 rs35941 T C 4664.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4693,474,0 5 53751901 rs7699 G A 5818.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5847,586,0 5 53751988 rs7823 T C 5100.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5129,503,0 5 53813830 rs76854460 A C 5715.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5744,572,0 5 53814052 rs2548615 T C 8533.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8562,843,0 5 53814394 rs2548614 T C 12506.8 PASS AC=2;AF=1;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,390:390:99:12535,1170,0 5 53815066 rs2548613 C A 4434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=4.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=0.623;SOR=0.506 GT:AD:DP:GQ:PL 0/1:159,175:334:99:4463,0,4143 5 53815219 rs35241631 G A 3777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.983;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-2.991;SOR=0.647 GT:AD:DP:GQ:PL 0/1:160,154:314:99:3806,0,4384 5 53815495 rs2548612 A C 8737.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8766,828,0 5 54403957 rs3104233 T C 1403.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1432,135,0 5 54404015 rs1875506 C T 1973.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2002,207,0 5 54410120 rs3104230 A C 3313.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3342,351,0 5 54439466 rs1021580 G A 3630.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3659,357,0 5 54459961 rs381852 A G 3746.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3775,389,0 5 54516521 rs6879219 G A 1981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.377;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-1.963;SOR=0.636 GT:AD:DP:GQ:PL 0/1:112,83:195:99:2010,0,3304 5 54528388 rs72749883 G C 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=-1.723;SOR=0.422 GT:AD:DP:GQ:PL 0/1:41,58:99:99:1440,0,1031 5 54572163 rs3761764 T C 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.419;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=4.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=1.16;SOR=0.744 GT:AD:DP:GQ:PL 0/1:37,47:84:99:1223,0,832 5 54603822 rs2290595 T C 1334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.214;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-2.159;SOR=0.693 GT:AD:DP:GQ:PL 0/1:53,53:106:99:1363,0,1389 5 54635826 rs111348674 T TC 996.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.539;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.588;QD=13.65;ReadPosRankSum=-0.837;SOR=1.031 GT:AD:DP:GQ:PL 0/1:40,33:73:99:1034,0,1165 5 54645411 rs2061242 G A 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.75;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.231;SOR=0.906 GT:AD:DP:GQ:PL 0/1:25,28:53:99:630,0,594 5 54674296 rs10471413 A G 699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.307;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.472;SOR=0.955 GT:AD:DP:GQ:PL 0/1:38,26:64:99:728,0,866 5 54693374 rs230802 G A 701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.659;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=9.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.905;SOR=0.169 GT:AD:DP:GQ:PL 0/1:28,32:60:99:730,0,720 5 54710072 rs201611017 GT G 168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.22;ReadPosRankSum=1.064;SOR=0.377 GT:AD:DP:GQ:PL 0/1:26,14:58:99:197,0,532 5 54830380 rs11745331 A G 1695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.567;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=1.493;SOR=0.741 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1724,0,1731 5 54960609 rs4865614 A G 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.172;SOR=0.714 GT:AD:DP:GQ:PL 0/1:54,63:117:99:1448,0,1186 5 54960673 rs4865615 C G 1292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-0.651;SOR=0.698 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1321,0,1293 5 54960687 rs4865616 C T 1089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-1.072;SOR=0.533 GT:AD:DP:GQ:PL 0/1:42,46:88:99:1118,0,1078 5 55058992 rs3761776 C A 541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.487;SOR=1.201 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,23:47:99:0|1:55058992_C_A:570,0,558 5 55062764 rs13181170 T C 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.529;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16;ReadPosRankSum=-1.223;SOR=0.886 GT:AD:DP:GQ:PL 0/1:25,43:68:99:1116,0,587 5 55081694 rs2305123 A G 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.401;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.37;ReadPosRankSum=1.972;SOR=0.636 GT:AD:DP:GQ:PL 0/1:30,34:64:99:1012,0,788 5 55082474 rs957459 C T 868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.223;SOR=0.666 GT:AD:DP:GQ:PL 0/1:45,38:83:99:897,0,1083 5 55149407 rs10940487 T C 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.132;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.66;ReadPosRankSum=1.482;SOR=0.779 GT:AD:DP:GQ:PL 0/1:48,63:111:99:1655,0,1035 5 55155402 rs1009639 C T 600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.75;ReadPosRankSum=1.016;SOR=0.727 GT:AD:DP:GQ:PL 0/1:56,33:89:99:629,0,1322 5 56111751 rs28710284 G C 7053.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,221:221:99:7082,663,0 5 56152416 rs832567 C A 2122.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2151,204,0 5 56161787 rs832575 G A 2402.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.349 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2431,228,0 5 56177443 rs702689 G A 2734.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2763,276,0 5 56177743 rs832582 G A 4915.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=31.31;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4944,470,0 5 56177848 rs67794491 TCAA T 6093.73 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=44.48;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,137:147:99:6131,414,0 5 56178217 rs832583 A C 3870.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.66;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3899,345,0 5 56207123 rs2257505 T A 3762.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.44;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3791,348,0 5 56209735 rs40497 A G 799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.963;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.534;SOR=1.041 GT:AD:DP:GQ:PL 0/1:45,31:76:99:828,0,1163 5 56526783 rs1130203 G A 3156.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3185,312,0 5 57754005 rs1848510 G A 522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-0.447;SOR=0.714 GT:AD:DP:GQ:PL 0/1:28,24:52:99:551,0,734 5 57754808 rs697133 G A 492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-1.263;SOR=0.446 GT:AD:DP:GQ:PL 0/1:19,20:39:99:521,0,480 5 57755703 rs3211270 C T 2037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.145;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=4.65;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.319;SOR=0.77 GT:AD:DP:GQ:PL 0/1:80,79:159:99:2066,0,1923 5 58286625 rs1553114 C T 1860.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1889,198,0 5 58286737 . GA G 106.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.68;ReadPosRankSum=0.617;SOR=0.549 GT:AD:DP:GQ:PL 0/1:20,9:35:99:144,0,455 5 58295380 rs35776313 G GTA 429.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.146;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.58;SOR=0.876 GT:AD:DP:GQ:PL 0/1:29,17:50:99:467,0,958 5 59899413 rs11740327 G A 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.357;SOR=1.005 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1350,0,1775 5 60170512 . TA T 177.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=3.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.4;ReadPosRankSum=-0.755;SOR=0.355 GT:AD:DP:GQ:PL 0/1:57,17:79:99:215,0,1294 5 60200665 rs4647100 A G 571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.627;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,26:55:99:0|1:60200651_G_T:600,0,637 5 60241142 rs158921 G A 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=5.573;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=2.492;QD=12.26;ReadPosRankSum=-1.878;SOR=0.715 GT:AD:DP:GQ:PL 0/1:83,83:166:99:2063,0,2089 5 60628153 . G GGGC 2057.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.142;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=2.001;QD=19.05;ReadPosRankSum=0.495;SOR=0.929 GT:AD:DP:GQ:PL 0/1:53,55:108:99:2095,0,2021 5 60628181 . A AGCG 1071.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.29;ReadPosRankSum=1.511;SOR=0.534 GT:AD:DP:GQ:PL 0/1:33,29:62:99:1109,0,1276 5 60982841 rs16893687 G A 1597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=1.387;SOR=0.885 GT:AD:DP:GQ:PL 0/1:57,68:125:99:1626,0,1425 5 61642937 rs3213940 T C 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.092;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=0.821;SOR=1.125 GT:AD:DP:GQ:PL 0/1:21,21:42:99:591,0,474 5 61684882 rs35130331 GA G 680.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=1.389;SOR=1.197 GT:AD:DP:GQ:PL 0/1:31,32:63:99:718,0,751 5 61694379 rs247264 T C 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.394;SOR=0.637 GT:AD:DP:GQ:PL 0/1:60,54:114:99:1228,0,1355 5 61697859 rs27089 C T 758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.911;SOR=0.668 GT:AD:DP:GQ:PL 0/1:44,32:76:99:787,0,1222 5 61745737 rs11329383 CT C 440.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.1;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.43;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=0.684;QD=12.24;ReadPosRankSum=-0.734;SOR=0.463 GT:AD:DP:GQ:PL 0/1:11,25:39:99:478,0,208 5 61772535 rs26635 G T 235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=3.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-0.776;SOR=1.802 GT:AD:DP:GQ:PL 0/1:14,11:25:99:264,0,418 5 61785936 rs26644 T C 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.692;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=2.403;SOR=1.024 GT:AD:DP:GQ:PL 0/1:31,43:74:99:1076,0,668 5 63802636 rs36025131 C CT 363.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=5.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.91;ReadPosRankSum=-1.051;SOR=0.384 GT:AD:DP:GQ:PL 0/1:22,24:59:99:401,0,459 5 63905068 rs889248 A G 2054.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.69;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2083,230,0 5 64023981 rs275819 C T 566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.17;ReadPosRankSum=-0.96;SOR=0.602 GT:AD:DP:GQ:PL 0/1:51,28:79:99:595,0,1277 5 64273018 rs1309581 G A 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.937;SOR=0.867 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1052,0,1084 5 64447777 rs17206779 C T 3528.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3557,368,0 5 64748681 rs1309615 T C 5516.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5545,569,0 5 64881936 rs27141 A G 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.032;SOR=0.791 GT:AD:DP:GQ:PL 0/1:88,84:172:99:1879,0,2055 5 64890479 rs36135 A C 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.21;ReadPosRankSum=1.665;SOR=0.782 GT:AD:DP:GQ:PL 0/1:61,49:110:99:821,0,1431 5 64892939 rs33945461 T G 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.563;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=0.164;SOR=0.419 GT:AD:DP:GQ:PL 0/1:62,74:136:99:1903,0,1506 5 64926104 rs6874425 A G 1052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-0.82;SOR=0.886 GT:AD:DP:GQ:PL 0/1:47,45:92:99:1081,0,1204 5 64926174 rs35217736 C T 637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=3.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=1.862;SOR=0.352 GT:AD:DP:GQ:PL 0/1:31,24:55:99:666,0,918 5 64960311 rs3830443 A ATCTC 1650.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.094;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=4.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.25;ReadPosRankSum=1.29;SOR=1.312 GT:AD:DP:GQ:PL 0/1:28,43:71:99:1688,0,1287 5 65108215 rs2254485 A G 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.79;SOR=1.088 GT:AD:DP:GQ:PL 0/1:23,25:48:99:697,0,604 5 65317181 rs706679 C T 2050.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.98;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2079,226,0 5 65364692 rs1160930 CCT C 1459.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.585;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.32;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.14;QD=16.22;ReadPosRankSum=1.828;SOR=1.236 GT:AD:DP:GQ:PL 0/1:50,40:90:99:1497,0,1986 5 66195774 rs7711116 T C 752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.508;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=0.933;SOR=0.629 GT:AD:DP:GQ:PL 0/1:57,33:90:99:781,0,1302 5 66391516 . CT C 255.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=5.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.5;ReadPosRankSum=0.371;SOR=1.319 GT:AD:DP:GQ:PL 0/1:53,20:88:99:293,0,1141 5 66429329 rs2371882 G T 3333.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.365 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3362,326,0 5 66459878 rs1705399 G C 9365.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,315:315:99:9394,945,0 5 66480004 rs1697144 T C 3426.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3455,321,0 5 66492412 rs5744463 C G 1550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.558;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-1.06;SOR=0.508 GT:AD:DP:GQ:PL 0/1:72,66:138:99:1579,0,1716 5 68412048 rs34215592 A AT 1600.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.371;QD=14.42;ReadPosRankSum=0.015;SOR=0.646 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1638,0,1520 5 68417643 rs164578 C T 1219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.768;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.725;SOR=0.733 GT:AD:DP:GQ:PL 0/1:64,48:112:99:1248,0,1538 5 68419054 rs164572 A T 1266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=6.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.297;SOR=0.325 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1295,0,1364 5 68525027 rs2932777 C T 1607.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.36;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1636,182,0 5 68531253 rs2972388 C T 1201.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1230,122,0 5 68602746 rs6881767 G C 589.77 PASS AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.81;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,22:22:66:618,66,0 5 68609885 rs11749723 G T 1415.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.71;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1444,126,0 5 68692375 rs34097088 T TA 487.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.482;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=7.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.893;SOR=1.714 GT:AD:DP:GQ:PL 0/1:15,28:48:99:525,0,166 5 68695940 rs1045051 T G 4037.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=28.64;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4066,422,0 5 68715310 rs1185246 C T 7566.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,267:267:99:7595,797,0 5 68868255 rs201020620 C T 336.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.6;QD=28.06;SOR=5.136 GT:AD:DP:GQ:PL 1/1:0,12:12:36:365,36,0 5 70308251 rs28409706 C T 4620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.7;ReadPosRankSum=1.038;SOR=0.665 GT:AD:DP:GQ:PL 0/1:81,180:261:99:4649,0,1645 5 70751818 rs3748043 T G 1823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.214;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-0.785;SOR=0.605 GT:AD:DP:GQ:PL 0/1:112,82:194:99:1852,0,2738 5 70797500 . TAAA T 265.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.416;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.15;ReadPosRankSum=1.056;SOR=0.507 GT:AD:DP:GQ:PL 0/1:4,8:23:99:300,0,224 5 70800475 rs3761966 C T 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=0.369;SOR=0.693 GT:AD:DP:GQ:PL 0/1:58,38:96:99:848,0,1430 5 70806711 rs715747 C G 1787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.694;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=5.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.163;SOR=0.727 GT:AD:DP:GQ:PL 0/1:89,70:159:99:1816,0,2385 5 70806958 rs6886336 G A 1364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.555;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.308;QD=12.64;ReadPosRankSum=-1.136;SOR=0.875 GT:AD:DP:GQ:PL 0/1:49,59:108:99:1393,0,1278 5 70818329 . CA C 91.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.791;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.562;QD=1.24;ReadPosRankSum=1.003;SOR=0.495 GT:AD:DP:GQ:PL 0/1:59,15:84:99:129,0,1259 5 70837295 rs6453014 A C 313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.189;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.375;SOR=0.793 GT:AD:DP:GQ:PL 0/1:16,14:30:99:342,0,443 5 70858194 rs277941 C T 827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=0.46;SOR=0.551 GT:AD:DP:GQ:PL 0/1:58,42:100:99:856,0,1398 5 70930966 rs277984 A G 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.666;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.04;ReadPosRankSum=0.713;SOR=0.791 GT:AD:DP:GQ:PL 0/1:43,56:99:99:1616,0,1009 5 70945075 rs10064079 A G 1291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.63;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.619;SOR=0.76 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1320,0,1495 5 71479649 . C T 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=1.007;SOR=0.612 GT:AD:DP:GQ:PL 0/1:45,45:90:99:1019,0,1139 5 71490962 rs1866374 A G 6243.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6272,628,0 5 71495041 rs3805452 T C 5412.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5441,549,0 5 71519664 rs3209157 C T 1961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.161;SOR=0.498 GT:AD:DP:GQ:PL 0/1:86,87:173:99:1990,0,2057 5 71524163 rs10942927 A T 1110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=-1.199;SOR=0.483 GT:AD:DP:GQ:PL 0/1:33,47:80:99:1139,0,802 5 71756102 rs7721922 G A 4089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=1.042;SOR=0.555 GT:AD:DP:GQ:PL 0/1:173,174:347:99:4118,0,4487 5 72184098 rs17606 C T 5444.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5473,551,0 5 72419267 rs638333 T C 4583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=-3.537;QD=13.32;ReadPosRankSum=2.182;SOR=0.598 GT:AD:DP:GQ:PL 0/1:155,189:344:99:4612,0,3692 5 72419293 . CTTG C 5859.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.559;ClippingRankSum=0;DP=354;ExcessHet=3.0103;FS=4.856;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=3.462;QD=17.39;ReadPosRankSum=-2.16;SOR=0.949 GT:AD:DP:GQ:PL 0/1:183,154:340:99:5897,0,6973 5 72419410 rs7731777 A G 11137.8 PASS AC=2;AF=1;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.03;QD=30.94;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,360:360:99:11166,1078,0 5 72742882 rs2972191 T C 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.97;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.277;SOR=0.857 GT:AD:DP:GQ:PL 0/1:40,51:91:99:1159,0,800 5 72743214 . C T 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=5.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-0.047;SOR=1.085 GT:AD:DP:GQ:PL 0/1:52,69:121:99:1421,0,1036 5 72743299 . G GGC 5397.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.634;ClippingRankSum=0;DP=170;ExcessHet=3.0103;FS=14.307;MLEAC=2;MLEAF=1;MQ=60.7;MQRankSum=0;QD=34.6;ReadPosRankSum=6.231;SOR=1.007 GT:AD:DP:GQ:PL 1/1:29,127:156:99:5435,164,0 5 72865307 rs347234 C T 781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=2.765;SOR=0.656 GT:AD:DP:GQ:PL 0/1:25,34:59:99:810,0,580 5 72872766 rs1220622 C T 1524.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.436 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1553,153,0 5 72874907 rs343122 A C 2249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.871;SOR=0.61 GT:AD:DP:GQ:PL 0/1:81,90:171:99:2278,0,1873 5 73090261 rs7716253 T C 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-1.152;SOR=0.843 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1253,0,907 5 73091228 rs2973548 C T 690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.258;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-1.483;SOR=0.916 GT:AD:DP:GQ:PL 0/1:46,30:76:99:719,0,1109 5 73142296 rs2973571 C T 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.456;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=5.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.091;SOR=1.271 GT:AD:DP:GQ:PL 0/1:56,53:109:99:1421,0,1410 5 73144845 rs2973568 A G 3860.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3889,405,0 5 73148481 rs2973566 G A 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.056;SOR=0.73 GT:AD:DP:GQ:PL 0/1:45,46:91:99:1025,0,1051 5 73163831 rs2931423 C T 2074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=4.965;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.471;SOR=0.442 GT:AD:DP:GQ:PL 0/1:107,91:198:99:2103,0,2784 5 73163861 rs2931422 C T 6088.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6117,614,0 5 73163965 rs2973558 C A 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.036;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=1.74;SOR=0.657 GT:AD:DP:GQ:PL 0/1:111,96:207:99:2333,0,2711 5 73179672 rs3749645 C T 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.36;ReadPosRankSum=1.707;SOR=0.705 GT:AD:DP:GQ:PL 0/1:33,56:89:99:1395,0,753 5 73930751 rs300239 C T 3943.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3972,375,0 5 73931246 rs442425 T C 5202.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5231,506,0 5 73932315 rs9176 T C 2250.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.3;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2279,186,0 5 73981270 rs820878 T C 5843.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5872,552,0 5 74400516 rs56174528 G C 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.08;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.304;SOR=0.814 GT:AD:DP:GQ:PL 0/1:107,81:188:99:2059,0,2856 5 74433839 rs5868765 G GA 558.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.76;ReadPosRankSum=2.565;SOR=0.507 GT:AD:DP:GQ:PL 0/1:43,29:77:99:596,0,800 5 74442410 rs1422699 G A 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=0.342;SOR=0.676 GT:AD:DP:GQ:PL 0/1:53,63:116:99:1740,0,1486 5 74442920 rs6888707 A G 2703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=1.019;SOR=0.763 GT:AD:DP:GQ:PL 0/1:110,116:226:99:2732,0,2631 5 74443132 rs1422698 C T 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.143;SOR=0.692 GT:AD:DP:GQ:PL 0/1:62,79:141:99:1893,0,1488 5 74491715 rs10563854 TTCA T 3456.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=7.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.33;ReadPosRankSum=-0.783;SOR=1.005 GT:AD:DP:GQ:PL 0/1:81,89:170:99:3494,0,3511 5 74506658 rs2219745 C T 684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=1.018;SOR=0.931 GT:AD:DP:GQ:PL 0/1:31,31:62:99:713,0,800 5 74646878 rs11742194 C T 270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.991;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.15;ReadPosRankSum=-2.329;SOR=0.576 GT:AD:DP:GQ:PL 0/1:30,14:44:99:299,0,1017 5 74656175 rs5909 G A 1202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.494;SOR=0.627 GT:AD:DP:GQ:PL 0/1:56,56:112:99:1231,0,1328 5 74965122 rs34358 G A 4127.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=1.069 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4156,423,0 5 75427935 rs10070440 G A 7690.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7719,762,0 5 75884734 rs1131232 G A 343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.251;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=-0.501;SOR=1.061 GT:AD:DP:GQ:PL 0/1:28,17:45:99:372,0,700 5 75923285 rs2431351 C T 3483.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.55;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,80:80:99:1|1:75923285_C_T:3512,241,0 5 75923294 rs2431352 T G 3458.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.34;SOR=0.855 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,78:78:99:1|1:75923285_C_T:3487,238,0 5 75923307 rs2909888 A G 2284.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2313,234,0 5 75932869 rs2910819 C T 2928.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2957,314,0 5 75932965 rs2455230 G C 2918.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2947,276,0 5 75936944 rs457821 G A 2022.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.63;SOR=2.019 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2051,186,0 5 75948650 rs2431363 A G 2431.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2460,254,0 5 75960865 rs253093 T C 1579.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=29.25;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1608,162,0 5 76128521 rs616235 G A 2519.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=1.7 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2548,237,0 5 76129053 rs631465 T C 4968.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4997,459,0 5 76171252 rs1320308 A C 4306.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4335,435,0 5 76704849 rs186753 T C 3696.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3725,386,0 5 76708987 rs335614 A G 3670.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.96;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.84;ReadPosRankSum=-1.064;SOR=0.85 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3699,319,0 5 76734084 rs33204 C T 2262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.16;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-1.627;SOR=0.84 GT:AD:DP:GQ:PL 0/1:119,102:221:99:2291,0,2803 5 76736621 rs2560077 G A 1095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-2.098;SOR=0.933 GT:AD:DP:GQ:PL 0/1:50,49:99:99:1124,0,1295 5 76785406 rs56195720 G GGA 295.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.425;SOR=0.278 GT:AD:DP:GQ:PL 0/1:14,14:39:99:333,0,759 5 76926578 rs13357072 T C 5417.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5446,504,0 5 77425028 rs6453373 A T 4048.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4077,420,0 5 77524068 rs5868908 T TA 1168.73 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.18;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1206,129,0 5 77745853 rs66744502 C CA 2345.73 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.83;SOR=1.234 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2383,187,0 5 77784738 rs2241566 A G 4534.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.62;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4563,417,0 5 78135241 rs25414 C T 563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.424;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.81;ReadPosRankSum=0;SOR=0.922 GT:AD:DP:GQ:PL 0/1:69,28:97:99:592,0,1697 5 78181423 rs1071598 C T 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.79;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.559;SOR=0.727 GT:AD:DP:GQ:PL 0/1:144,130:274:99:2908,0,3539 5 78340257 rs248385 C G 4657.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4686,464,0 5 78340286 rs532964 A G 4534.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4563,454,0 5 78351636 rs2253262 A C 2012.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2041,204,0 5 78373431 rs682985 C T 3854.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3883,375,0 5 78532658 rs3733893 C T 2741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.937;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.685;SOR=0.636 GT:AD:DP:GQ:PL 0/1:104,119:223:99:2770,0,2711 5 78573790 rs13182512 A T 781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.92;ReadPosRankSum=1.588;SOR=0.656 GT:AD:DP:GQ:PL 0/1:73,40:113:99:810,0,1822 5 78587135 rs17234734 A T 1061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=3.045;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.702;SOR=0.42 GT:AD:DP:GQ:PL 0/1:39,44:83:99:1090,0,989 5 78596044 rs10514159 T C 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.57;ReadPosRankSum=-0.183;SOR=0.669 GT:AD:DP:GQ:PL 0/1:93,58:151:99:1172,0,2132 5 78742858 rs12516663 T C 726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.144;SOR=0.653 GT:AD:DP:GQ:PL 0/1:41,33:74:99:755,0,927 5 78742980 rs6862358 G A 1747.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=1.355 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1776,180,0 5 78964871 . GTGTT G 1785.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.037;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.41;ReadPosRankSum=0.166;SOR=1.053 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1823,0,2440 5 79351852 rs438042 A T 3128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.258;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.09;ReadPosRankSum=-1.67;SOR=0.767 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,81:173:99:0|1:79351852_A_T:3157,0,5084 5 79351859 rs405482 G A 3203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.144;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.74;ReadPosRankSum=-1.63;SOR=0.99 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,81:171:99:0|1:79351852_A_T:3232,0,5021 5 79351860 rs447875 G A 3147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.52;ReadPosRankSum=-1.398;SOR=1.033 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,80:170:99:0|1:79351852_A_T:3176,0,5027 5 79354147 rs368936 C T 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.69;ReadPosRankSum=0.272;SOR=0.657 GT:AD:DP:GQ:PL 0/1:25,51:76:99:1221,0,509 5 79366249 rs256438 T G 1363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.141;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=-0.091;SOR=0.806 GT:AD:DP:GQ:PL 0/1:37,59:96:99:1392,0,893 5 79375724 rs2288395 G C 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=0.075;SOR=0.501 GT:AD:DP:GQ:PL 0/1:56,51:107:99:1403,0,1633 5 79616083 rs1862136 G C 1909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.285;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.332;SOR=0.715 GT:AD:DP:GQ:PL 0/1:81,77:158:99:1938,0,1856 5 79616936 rs35337118 A C 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.745;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.19;SOR=0.677 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1708,0,2025 5 79733079 rs2544600 T C 5474.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5503,507,0 5 79734297 rs259028 T C 4746.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.15;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4775,416,0 5 79734409 rs259029 G A 5959.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5988,593,0 5 79735858 rs168939 A G 2075.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.48;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2104,185,0 5 79745469 rs249038 A G 3460.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3489,342,0 5 79747291 rs249039 A G 1546.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1575,150,0 5 79773028 rs166062 T G 2977.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.514 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3006,288,0 5 79815658 rs369998 T C 4887.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4916,494,0 5 79855372 rs32857 A G 2256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.12;SOR=0.733 GT:AD:DP:GQ:PL 0/1:85,91:176:99:2285,0,2201 5 79950781 rs1650697 A G 4814.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=1.594 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4843,449,0 5 80149981 rs184967 A G 2812.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2841,297,0 5 80168937 rs26279 G A 1643.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=1.656 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1672,150,0 5 80381725 rs34679424 A G 994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.533;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=3.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.057;SOR=1.028 GT:AD:DP:GQ:PL 0/1:54,41:95:99:1023,0,1216 5 80521485 rs7725743 C A 2109.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2138,210,0 5 80655709 rs13163821 T C 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.15;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=0.727;SOR=0.418 GT:AD:DP:GQ:PL 0/1:53,60:113:99:1527,0,1346 5 80689953 rs13178695 C A 2804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.042;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.478;SOR=0.828 GT:AD:DP:GQ:PL 0/1:111,118:229:99:2833,0,2661 5 81549216 rs1864183 C T 2428.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2457,249,0 5 81549240 rs1864182 C A 2131.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2160,207,0 5 82786194 rs12332199 T C 3230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.46;SOR=0.646 GT:AD:DP:GQ:PL 0/1:124,145:269:99:3259,0,2847 5 82789647 rs4470745 A G 2747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.287;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-2.664;SOR=0.657 GT:AD:DP:GQ:PL 0/1:124,109:233:99:2776,0,2972 5 82833145 rs2548541 G A 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-0.161;SOR=0.689 GT:AD:DP:GQ:PL 0/1:119,94:213:99:2192,0,3242 5 82833369 rs309559 A G 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.471;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=1.51;SOR=0.673 GT:AD:DP:GQ:PL 0/1:95,94:189:99:2574,0,2230 5 82834299 rs188703 G A 2638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.309;SOR=0.622 GT:AD:DP:GQ:PL 0/1:109,113:222:99:2667,0,2742 5 82834630 rs309557 T C 2421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=1.019;SOR=0.644 GT:AD:DP:GQ:PL 0/1:124,104:228:99:2450,0,3110 5 82835545 rs160279 A G 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.646;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=3.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-2.73;SOR=0.762 GT:AD:DP:GQ:PL 0/1:79,76:155:99:2065,0,2012 5 82835724 rs160278 T A 2183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=1.433;SOR=0.614 GT:AD:DP:GQ:PL 0/1:94,95:189:99:2212,0,2250 5 82837631 rs160277 G T 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=3.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-2.146;SOR=0.763 GT:AD:DP:GQ:PL 0/1:111,88:199:99:2097,0,2797 5 82875800 rs308365 C T 3821.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.384 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3850,387,0 5 82940273 rs2242128 C G 2005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.469;SOR=0.913 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2034,0,2134 5 83476194 rs163715 G A 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.752;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.394;SOR=0.415 GT:AD:DP:GQ:PL 0/1:64,54:118:99:1183,0,1759 5 87498849 rs3097146 G A 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.34;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=-0.297;SOR=0.489 GT:AD:DP:GQ:PL 0/1:24,33:57:99:827,0,622 5 87502325 rs357515 G A 679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.557;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=6.188;MLEAC=1;MLEAF=0.5;MQ=61;MQRankSum=2.193;QD=10.79;ReadPosRankSum=0.29;SOR=0.822 GT:AD:DP:GQ:PL 0/1:31,32:73:99:708,0,653 5 89703641 rs4873 C G 768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=0.535;SOR=0.831 GT:AD:DP:GQ:PL 0/1:48,34:82:99:797,0,1282 5 89769647 rs3763072 G A 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=6.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.371;SOR=1.306 GT:AD:DP:GQ:PL 0/1:65,67:132:99:1694,0,1689 5 89769728 rs2162986 T C 6056.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6085,615,0 5 89815312 rs34548009 G GA 837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.462;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.021;QD=9.63;ReadPosRankSum=0.685;SOR=0.614 GT:AD:DP:GQ:PL 0/1:47,40:94:99:866,0,993 5 89820984 rs10069050 T C 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-2.147;SOR=0.586 GT:AD:DP:GQ:PL 0/1:78,71:149:99:1741,0,2028 5 89914925 rs41311333 T G 524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=0.706;SOR=0.37 GT:AD:DP:GQ:PL 0/1:37,27:64:99:553,0,931 5 89938587 rs2366773 C T 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=-0.03;SOR=0.622 GT:AD:DP:GQ:PL 0/1:71,44:115:99:1116,0,1960 5 89943571 rs2366777 G T 894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=1.433;SOR=0.375 GT:AD:DP:GQ:PL 0/1:48,40:88:99:923,0,1271 5 89979589 rs4916684 G A 2427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=0.664;SOR=0.61 GT:AD:DP:GQ:PL 0/1:90,102:192:99:2456,0,2198 5 89979698 rs4916685 C T 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.023;SOR=0.882 GT:AD:DP:GQ:PL 0/1:71,71:142:99:1811,0,1795 5 89985882 rs10037067 A G 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=5.339;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=1.583;SOR=0.245 GT:AD:DP:GQ:PL 0/1:38,27:65:99:682,0,972 5 89988412 rs10040165 G A 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-1.225;SOR=0.776 GT:AD:DP:GQ:PL 0/1:32,34:66:99:885,0,900 5 89988504 rs2366926 A G 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.505;SOR=0.657 GT:AD:DP:GQ:PL 0/1:67,78:145:99:1768,0,1456 5 89989779 rs16876822 G A 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.519;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=4.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.099;SOR=1.168 GT:AD:DP:GQ:PL 0/1:55,59:114:99:1528,0,1332 5 89990324 rs1878878 A G 2528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.783;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.88;ReadPosRankSum=-1.41;SOR=0.588 GT:AD:DP:GQ:PL 0/1:76,94:170:99:2557,0,1842 5 90002220 rs60522638 C CT 479.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.994;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=1.522;QD=7.38;ReadPosRankSum=-0.974;SOR=0.456 GT:AD:DP:GQ:PL 0/1:39,26:74:99:517,0,765 5 90020923 rs16869042 T G 614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=1.17;SOR=0.627 GT:AD:DP:GQ:PL 0/1:27,24:51:99:643,0,742 5 90024735 rs2366928 G A 631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.523;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=1.252;SOR=0.951 GT:AD:DP:GQ:PL 0/1:37,24:61:99:660,0,1022 5 90052263 rs34894132 T TC 405.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.8;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=-0.549;SOR=0.446 GT:AD:DP:GQ:PL 0/1:34,18:52:99:443,0,949 5 90052289 rs10062026 G A 785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.309;QD=8.45;ReadPosRankSum=-0.448;SOR=0.687 GT:AD:DP:GQ:PL 0/1:58,35:93:99:814,0,1669 5 90052372 rs2438349 C T 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.5;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.183;QD=8.53;ReadPosRankSum=0.505;SOR=0.71 GT:AD:DP:GQ:PL 0/1:82,60:142:99:1239,0,1890 5 90079820 rs17554631 A G 3771.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3800,402,0 5 90107108 rs2438374 A G 3860.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3889,413,0 5 90119324 rs2438378 G A 3152.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3181,332,0 5 90151589 rs2247870 G A 3039.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3068,288,0 5 90445829 rs35858094 T TTC 1138.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.52;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.938;SOR=1.014 GT:AD:DP:GQ:PL 0/1:26,62:88:99:1176,0,432 5 90449031 rs7726023 T C 3149.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3178,312,0 5 93722050 rs29913 G T 1333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.8;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=8.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.015;SOR=0.27 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1362,0,1406 5 93731985 rs308207 A G 1600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.712;SOR=0.719 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1629,0,1877 5 93753017 rs29910 C T 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.25;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-0.925;SOR=0.666 GT:AD:DP:GQ:PL 0/1:66,81:147:99:1941,0,1541 5 94050487 rs2636 T A 2140.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.45;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2169,234,0 5 94206202 rs159032 C T 606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=1.389;SOR=0.657 GT:AD:DP:GQ:PL 0/1:35,29:64:99:635,0,906 5 94278129 rs293035 T C 573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.911;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-2.586;SOR=0.674 GT:AD:DP:GQ:PL 0/1:36,23:59:99:602,0,894 5 94619545 rs5869672 G GC 4512.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.009;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.56;ReadPosRankSum=-0.716;SOR=1.223 GT:AD:DP:GQ:PL 1/1:2,156:158:99:4550,428,0 5 94772540 rs6878669 C T 2276.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2305,245,0 5 94903575 . CT C 191.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.3;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.18;ReadPosRankSum=0.568;SOR=0.616 GT:AD:DP:GQ:PL 0/1:68,20:97:99:229,0,1544 5 94956619 rs113272282 G C 2594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.409;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.07;SOR=0.589 GT:AD:DP:GQ:PL 0/1:101,91:192:99:2623,0,2732 5 94994339 rs10705 A G 362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=1.234;SOR=1.493 GT:AD:DP:GQ:PL 0/1:14,12:26:99:391,0,445 5 95084131 rs34896 G A 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.048;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.048;SOR=0.604 GT:AD:DP:GQ:PL 0/1:41,41:82:99:1069,0,993 5 95091194 rs34898 C T 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=0.412;SOR=0.623 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,57:142:99:0|1:95091194_C_T:2128,0,4107 5 95091201 rs34899 A G 2110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.106;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=-0.389;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,59:146:99:0|1:95091194_C_T:2139,0,4204 5 95152313 rs4561 A G 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.389;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.699;SOR=0.662 GT:AD:DP:GQ:PL 0/1:20,22:42:99:522,0,455 5 95234350 rs3777204 A G 2620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-2.155;QD=11.49;ReadPosRankSum=0.857;SOR=0.736 GT:AD:DP:GQ:PL 0/1:122,106:228:99:2649,0,3105 5 95234377 rs3777203 C T 2463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-2.462;QD=10.02;ReadPosRankSum=-0.055;SOR=0.698 GT:AD:DP:GQ:PL 0/1:134,112:246:99:2492,0,3424 5 95234392 rs3777202 A C 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.6;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-2.427;QD=10.31;ReadPosRankSum=-1.79;SOR=0.694 GT:AD:DP:GQ:PL 0/1:129,111:240:99:2503,0,3193 5 95236415 rs17085249 G A 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.123;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=1.459;SOR=0.598 GT:AD:DP:GQ:PL 0/1:38,38:76:99:918,0,866 5 95236459 rs3815768 C T 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.724;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=0.213;SOR=0.836 GT:AD:DP:GQ:PL 0/1:33,40:73:99:1018,0,762 5 95728898 rs6235 C G 2637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.13;ReadPosRankSum=-0.206;SOR=0.509 GT:AD:DP:GQ:PL 0/1:55,99:154:99:2666,0,1373 5 95728974 rs6234 G C 2888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.249;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=0.601;SOR=0.644 GT:AD:DP:GQ:PL 0/1:85,121:208:99:2917,0,1883 5 95733112 rs6233 A G 626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.432;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=-0.356;SOR=0.739 GT:AD:DP:GQ:PL 0/1:43,28:71:99:655,0,1099 5 95751785 rs6232 T C 557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.851;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=0.243;SOR=0.673 GT:AD:DP:GQ:PL 0/1:34,25:59:99:586,0,722 5 96076487 rs7724759 G A 1493.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.16;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1522,165,0 5 96079402 rs26506 C T 2844.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2873,296,0 5 96086334 rs754615 G C 2667.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2696,267,0 5 96101031 rs373206248 TAAAA T 398.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.232;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=36.25;ReadPosRankSum=-0.141;SOR=1.609 GT:AD:DP:GQ:PL 0/1:2,9:18:66:380,0,66 5 96112083 rs1065407 T G 4240.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4269,449,0 5 96116112 rs35237285 AT A 613.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=1.343;SOR=0.578 GT:AD:DP:GQ:PL 0/1:25,32:63:99:651,0,478 5 96117555 rs61745685 C T 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.195;SOR=0.945 GT:AD:DP:GQ:PL 0/1:49,46:95:99:1116,0,1286 5 96118852 rs27044 G C 5248.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5277,533,0 5 96118866 rs17482078 C T 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=0.164;SOR=0.687 GT:AD:DP:GQ:PL 0/1:100,81:181:99:1799,0,2310 5 96121524 rs469783 C T 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=0.378;SOR=0.641 GT:AD:DP:GQ:PL 0/1:73,58:131:99:1242,0,1756 5 96122210 rs10050860 C T 723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.93;SOR=0.563 GT:AD:DP:GQ:PL 0/1:41,32:73:99:752,0,936 5 96122260 rs30379 T G 1447.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.345 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1476,146,0 5 96124330 rs30187 T C 4081.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.35;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4110,432,0 5 96126197 rs27710 A G 3229.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3258,305,0 5 96126308 rs27529 A G 2579.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2608,260,0 5 96127905 rs27640 T C 3001.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=1.584 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3030,279,0 5 96129512 rs27434 A G 2266.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2295,219,0 5 96129535 rs2287987 T C 1139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.738;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.512;SOR=0.65 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1168,0,1107 5 96139250 rs26653 C G 6844.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6873,671,0 5 96215680 rs41506651 C T 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=-0.725;SOR=0.798 GT:AD:DP:GQ:PL 0/1:118,78:196:99:1771,0,3086 5 96231000 rs2549782 G T 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=12.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-1.125;SOR=0.665 GT:AD:DP:GQ:PL 0/1:51,39:90:99:901,0,1354 5 96232142 rs2548538 T A 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.071;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=6.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=-1.071;SOR=1.115 GT:AD:DP:GQ:PL 0/1:70,53:123:99:1219,0,1547 5 96232222 rs2548537 G C 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=2.404;SOR=0.631 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1420,0,1438 5 96235896 rs2248374 A G 1774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.703;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.186;SOR=0.69 GT:AD:DP:GQ:PL 0/1:65,73:138:99:1803,0,1360 5 96237326 rs2287988 G A 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.58;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=1.992;SOR=0.61 GT:AD:DP:GQ:PL 0/1:106,84:190:99:1881,0,2579 5 96245343 rs2549796 C T 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.4;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-1.436;SOR=0.746 GT:AD:DP:GQ:PL 0/1:95,80:175:99:1808,0,2385 5 96245439 rs1056893 C T 1756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.9;SOR=0.519 GT:AD:DP:GQ:PL 0/1:92,80:172:99:1785,0,2343 5 96249115 rs2255546 C T 1889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.36;ReadPosRankSum=0.379;SOR=0.606 GT:AD:DP:GQ:PL 0/1:46,77:123:99:1918,0,996 5 96332085 rs3836862 TC T 483.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.778;SOR=1.112 GT:AD:DP:GQ:PL 0/1:18,20:38:99:521,0,457 5 96339102 rs3214461 AC A 240.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.63;ReadPosRankSum=0.249;SOR=0.339 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,15:52:99:0|1:96339102_AC_A:278,0,1202 5 96498783 rs8654 G A 2894.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=1.79 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2923,285,0 5 96503523 rs160632 C T 5115.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5144,518,0 5 96512865 rs2548319 T A 4447.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.93;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,99:99:99:1|1:96512865_T_A:4476,307,0 5 96512871 rs2544772 T A 4544.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.7;SOR=0.772 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,104:104:99:1|1:96512865_T_A:4573,316,0 5 96513471 rs2544773 G C 2281.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2310,228,0 5 98109828 rs2547973 G A 780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.972;SOR=0.983 GT:AD:DP:GQ:PL 0/1:45,35:80:99:809,0,1178 5 98109838 rs2662263 A C 3002.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.18;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3031,249,0 5 101575091 rs62370437 C T 546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.165;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=7.036;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.04;ReadPosRankSum=-0.733;SOR=1.659 GT:AD:DP:GQ:PL 0/1:44,24:68:99:575,0,1014 5 101592809 rs261101 T A 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.485;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.366;SOR=0.578 GT:AD:DP:GQ:PL 0/1:38,35:73:99:819,0,925 5 101596032 rs202209380 AAAAT A 510.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.67;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=0.971;QD=17.61;ReadPosRankSum=0.023;SOR=1.174 GT:AD:DP:GQ:PL 0/1:13,16:29:99:548,0,493 5 101606518 rs33922930 G GA 796.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-1.402;SOR=0.848 GT:AD:DP:GQ:PL 0/1:38,37:77:99:834,0,728 5 101631592 rs3114659 A G 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=1.558;SOR=0.558 GT:AD:DP:GQ:PL 0/1:77,80:157:99:1881,0,1871 5 101631790 rs10479190 T G 3700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.536;SOR=0.695 GT:AD:DP:GQ:PL 0/1:158,152:310:99:3729,0,3885 5 101724448 rs10055840 G C 905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=0.139;SOR=1.085 GT:AD:DP:GQ:PL 0/1:62,40:102:99:934,0,1558 5 101795490 rs11746217 A G 2762.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=32.5;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2791,250,0 5 101795499 rs148394431 G GA 480.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.077;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=2.095;QD=7.18;ReadPosRankSum=0.406;SOR=0.705 GT:AD:DP:GQ:PL 0/1:42,25:72:99:518,0,840 5 101816104 rs6884141 G A 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=1.532;SOR=0.948 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1166,0,1550 5 102512570 rs11408825 C CA 1905.73 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.65;SOR=1.48 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1943,156,0 5 102890560 rs11373550 G GA 570.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.647;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.83;ReadPosRankSum=-0.491;SOR=1.445 GT:AD:DP:GQ:PL 1/1:2,23:28:63:607,63,0 5 102891695 rs10045774 A G 3028.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3057,311,0 5 108168451 rs376837075 CT C 228.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.35;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=5.429;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.169;QD=4.01;ReadPosRankSum=0.563;SOR=0.254 GT:AD:DP:GQ:PL 0/1:39,18:69:99:266,0,812 5 108203451 rs67418706 GT G 364.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.444;QD=6.08;ReadPosRankSum=0.626;SOR=0.82 GT:AD:DP:GQ:PL 0/1:36,24:72:99:402,0,810 5 108691738 rs2431253 A T 2437.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2466,260,0 5 108713970 rs10042721 C T 3125.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3154,303,0 5 108713982 rs12523186 T C 3108.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3137,315,0 5 108714298 rs1045706 T C 6634.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6663,644,0 5 108719151 rs1045704 G A 1858.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.33;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1887,204,0 5 109110537 rs6894260 T A 3278.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3307,336,0 5 109181682 rs3186988 A T 3937.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3966,405,0 5 109960960 rs72771461 T C 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.42;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=0.161;SOR=0.634 GT:AD:DP:GQ:PL 0/1:73,39:112:99:1052,0,1955 5 109960989 rs61730920 A G 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.639;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.85;ReadPosRankSum=0.562;SOR=0.727 GT:AD:DP:GQ:PL 0/1:85,47:132:99:1196,0,2293 5 109973902 rs1422495 T G 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.176;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.305;SOR=0.46 GT:AD:DP:GQ:PL 0/1:50,42:92:99:1084,0,1171 5 110079450 rs17446534 T C 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.413;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=1.648;SOR=0.63 GT:AD:DP:GQ:PL 0/1:38,26:64:99:591,0,836 5 110439509 rs11241095 A G 3899.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3928,363,0 5 110448753 rs33919278 T TATA,TATATA 431.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=19.62;SOR=1.101 GT:AD:DP:GQ:PL 1/2:0,7,15:27:99:469,338,452,153,0,177 5 110456704 rs13186912 A T 2296.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2325,231,0 5 110784822 rs2116824 A G 597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.905;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=0.474;SOR=0.742 GT:AD:DP:GQ:PL 0/1:19,26:45:99:626,0,379 5 110819753 rs25925 G C 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=0.303;SOR=0.625 GT:AD:DP:GQ:PL 0/1:78,95:173:99:2389,0,1986 5 111500816 rs145708081 C CTAAAA 1156.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.52;ReadPosRankSum=0.595;SOR=0.407 GT:AD:DP:GQ:PGT:PID:PL 0/1:22,48:70:99:0|1:111500816_C_CTAAAA:1194,0,597 5 111500822 . T TAAA 558.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.232;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=2.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=-0.092;SOR=1.17 GT:AD:DP:GQ:PGT:PID:PL 0/1:48,23:71:99:1|0:111500816_C_CTAAAA:596,0,1195 5 111500824 rs33929905 T TAC 558.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.856;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=-0.572;SOR=1.17 GT:AD:DP:GQ:PGT:PID:PL 0/1:48,23:71:99:1|0:111500816_C_CTAAAA:596,0,1195 5 111504479 rs7703522 C T 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.974;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=0.211;SOR=0.678 GT:AD:DP:GQ:PL 0/1:80,57:137:99:1306,0,1818 5 111506069 rs10040749 G A 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=0.397;SOR=0.796 GT:AD:DP:GQ:PL 0/1:37,45:82:99:1052,0,980 5 111519740 rs1560058 T C 2381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.127;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=1.132;SOR=0.687 GT:AD:DP:GQ:PL 0/1:75,103:178:99:2410,0,1470 5 111530284 rs7719346 A G 1123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.941;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=0.727;SOR=0.61 GT:AD:DP:GQ:PL 0/1:30,51:81:99:1152,0,529 5 111545670 rs890757 C G 418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.805;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.58;ReadPosRankSum=-0.537;SOR=0.82 GT:AD:DP:GQ:PL 0/1:54,21:75:99:447,0,1290 5 112043282 rs79896135 C G 5546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.262;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.32;ReadPosRankSum=0.937;SOR=0.555 GT:AD:DP:GQ:PL 0/1:164,198:362:99:5575,0,4468 5 112043384 rs78429131 T G 6678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.75;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=-0.941;SOR=0.779 GT:AD:DP:GQ:PL 0/1:205,246:451:99:6707,0,5340 5 112072793 rs2464810 A G 1284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.197;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=-0.865;SOR=0.943 GT:AD:DP:GQ:PL 0/1:89,55:144:99:1313,0,2141 5 112072889 rs2439593 C T 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.605;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=1.598;SOR=0.757 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1238,0,1685 5 112158431 rs2545162 G A 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.558;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.325;SOR=0.573 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1361,0,1198 5 112162854 rs2229992 T C 1136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.585;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.884;SOR=0.755 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1165,0,1213 5 112164561 rs351771 G A 734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-1.618;SOR=0.452 GT:AD:DP:GQ:PL 0/1:44,35:79:99:763,0,1034 5 112175770 rs41115 G A 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.534;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.702;SOR=0.603 GT:AD:DP:GQ:PL 0/1:91,82:173:99:2054,0,2325 5 112176325 rs42427 G A 1818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.907;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-3.074;SOR=0.656 GT:AD:DP:GQ:PL 0/1:99,75:174:99:1847,0,2442 5 112176559 rs866006 T G 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-1.388;SOR=0.616 GT:AD:DP:GQ:PL 0/1:73,82:155:99:1976,0,1897 5 112176756 rs459552 T A 1882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.588;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.635;SOR=0.585 GT:AD:DP:GQ:PL 0/1:85,78:163:99:1911,0,2074 5 112177171 rs465899 G A 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.857;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.075;SOR=0.834 GT:AD:DP:GQ:PL 0/1:86,71:157:99:1838,0,2190 5 112312676 rs33555 T C 3944.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.87;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3973,360,0 5 112384802 rs6594664 G A 4061.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=31.24;SOR=1.503 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4090,389,0 5 112399791 rs2227947 G A 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.173;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.341;SOR=0.771 GT:AD:DP:GQ:PL 0/1:95,88:183:99:2031,0,2471 5 112406785 rs149928825 G GCCTCGCGCTGTCTT 2290.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.47;ReadPosRankSum=0.613;SOR=0.885 GT:AD:DP:GQ:PL 0/1:70,54:124:99:2328,0,2736 5 112406862 rs2227950 G A 1633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.467;QD=10.89;ReadPosRankSum=0.523;SOR=0.648 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1662,0,1736 5 112439941 rs6594681 T C 5086.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5115,503,0 5 112479004 rs2227949 T C 5733.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5762,587,0 5 112487137 rs1947026 A C 554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.309;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.087;SOR=1.552 GT:AD:DP:GQ:PL 0/1:24,24:48:99:583,0,558 5 112720648 rs17327526 C A 1362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.51;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.957;SOR=0.918 GT:AD:DP:GQ:PL 0/1:57,57:114:99:1391,0,1414 5 112770027 rs26980 T G 3924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.994;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=0.371;SOR=0.708 GT:AD:DP:GQ:PL 0/1:133,155:288:99:3953,0,3244 5 112823998 rs348943 C T 6747.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=29.73;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6776,676,0 5 112824039 rs348942 T C 6714.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.9;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;MQRankSum=0.231;QD=28.82;ReadPosRankSum=2.076;SOR=0.89 GT:AD:DP:GQ:PL 1/1:2,231:233:99:6743,649,0 5 112824048 rs35336557 T TGCC 4737.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.91;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=4.037;MLEAC=2;MLEAF=1;MQ=60.28;MQRankSum=0.288;QD=24.3;ReadPosRankSum=1.364;SOR=0.523 GT:AD:DP:GQ:PL 1/1:13,182:195:99:4775,130,0 5 113698544 rs40179 G C 4580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0;DB;DP=361;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.951;QD=12.69;ReadPosRankSum=2.327;SOR=0.589 GT:AD:DP:GQ:PL 0/1:175,186:361:99:4609,0,4396 5 113698631 rs151038013 T TGCC 5595.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.562;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.191;QD=20.27;ReadPosRankSum=-0.448;SOR=0.517 GT:AD:DP:GQ:PL 0/1:134,142:276:99:5633,0,5167 5 113829121 rs1841251 A G 2569.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2598,240,0 5 114462355 rs2974617 C T 5363.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.179;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.3;ReadPosRankSum=0.355;SOR=0.705 GT:AD:DP:GQ:PL 1/1:2,175:177:99:5392,482,0 5 114612637 rs372585190 GATTAT G 535.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.235;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.76;ReadPosRankSum=0.85;SOR=0.538 GT:AD:DP:GQ:PL 0/1:19,15:34:99:573,0,1363 5 114620614 rs189371209 A G 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.442;SOR=0.656 GT:AD:DP:GQ:PL 0/1:56,50:106:99:1197,0,1354 5 115177721 rs1050864 G C 3505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.914;ClippingRankSum=0;DB;DP=471;ExcessHet=3.0103;FS=7.319;MLEAC=1;MLEAF=0.5;MQ=59.43;MQRankSum=2.202;QD=8.63;ReadPosRankSum=-2.974;SOR=1.175 GT:AD:DP:GQ:PL 0/1:257,149:406:99:3534,0,6411 5 115177803 . C CA 106.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.91;ClippingRankSum=0;DP=364;ExcessHet=3.0103;FS=55.992;MLEAC=1;MLEAF=0.5;MQ=59.26;MQRankSum=-12.437;QD=0.32;ReadPosRankSum=-3.457;SOR=4.981 GT:AD:DP:GQ:PGT:PID:PL 0/1:310,27:337:99:0|1:115177803_C_CA:144,0,13023 5 115177805 . T TGAAGATACACAACAGCAAATCATCAGG 106.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.925;ClippingRankSum=0;DP=355;ExcessHet=3.0103;FS=55.679;MLEAC=1;MLEAF=0.5;MQ=59.18;MQRankSum=-12.514;QD=0.31;ReadPosRankSum=-3.839;SOR=4.959 GT:AD:DP:GQ:PGT:PID:PL 0/1:314,27:341:99:0|1:115177803_C_CA:144,0,13023 5 115249078 rs7733604 C T 526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.515;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=22.496;MLEAC=1;MLEAF=0.5;MQ=59.43;MQRankSum=-6.219;QD=3.54;ReadPosRankSum=-3.442;SOR=2.603 GT:AD:DP:GQ:PL 0/1:120,29:149:99:555,0,3102 5 115298378 rs10062297 C T 6844.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6873,705,0 5 115298475 rs12520255 T C 8320.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8349,805,0 5 115298518 rs12522632 A G 9465.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9494,940,0 5 115298977 rs1445708 C T 4804.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4833,497,0 5 115339086 rs6594929 A G 2852.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2881,277,0 5 115341611 rs10078748 G T 2460.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2489,261,0 5 115341638 rs10078759 G C 2724.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2753,276,0 5 115394626 rs6880759 G A 5827.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5856,590,0 5 115428334 rs1129494 G T 2697.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2726,278,0 5 115469773 rs1129496 C T 2546.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2575,258,0 5 115813726 rs34966 A G 5586.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5615,549,0 5 118669304 rs56329027 C T 2724.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2753,263,0 5 118728495 . CT C 252.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.167;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.84;ReadPosRankSum=0.295;SOR=0.77 GT:AD:DP:GQ:PL 0/1:67,22:106:99:290,0,1543 5 118811533 rs25640 G A 1327.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1356,138,0 5 118861713 rs11205 A G 1694.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1723,167,0 5 120021817 rs17853861 C A 2724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=0.9;SOR=0.626 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,111:198:99:0|1:120021817_C_A:2753,0,2168 5 120021819 rs1158194 G A 7519.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.37;SOR=0.822 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,196:196:99:1|1:120021817_C_A:7548,593,0 5 121355961 rs55708726 G A 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=5.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.646;SOR=0.842 GT:AD:DP:GQ:PL 0/1:107,90:197:99:1975,0,2678 5 121356468 rs184386674 C T 1226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=1.417;SOR=0.821 GT:AD:DP:GQ:PL 0/1:72,53:125:99:1255,0,1986 5 121356506 rs189642466 C T 921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.21;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-1.237;SOR=0.538 GT:AD:DP:GQ:PL 0/1:45,40:85:99:950,0,1268 5 121413208 rs1800449 C T 2092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=1.282;SOR=0.656 GT:AD:DP:GQ:PL 0/1:136,91:227:99:2121,0,3313 5 121518309 rs9112 G A 3896.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3925,390,0 5 122131082 rs2161391 A G 2095.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2124,216,0 5 122425832 rs13182369 G T 3567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.243;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=4.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-0.543;SOR=0.775 GT:AD:DP:GQ:PL 0/1:177,159:336:99:3596,0,3992 5 122425971 rs199942027 A ACCTCCGCCT 4867.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.77;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.9;ReadPosRankSum=0.777;SOR=0.649 GT:AD:DP:GQ:PL 0/1:151,121:272:99:4905,0,7822 5 122682348 rs1047438 A G 1745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=0.199;SOR=0.533 GT:AD:DP:GQ:PL 0/1:54,75:129:99:1774,0,1207 5 122685727 rs1047437 C G 1724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.044;SOR=0.631 GT:AD:DP:GQ:PL 0/1:84,77:161:99:1753,0,2011 5 122685801 rs485847 G A 2586.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.637 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2615,258,0 5 122714134 . TA T 67.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=1.327;QD=3.39;ReadPosRankSum=2.18;SOR=0.269 GT:AD:DP:GQ:PL 0/1:12,8:20:99:105,0,189 5 122718736 rs6595440 G C 484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.554;SOR=0.404 GT:AD:DP:GQ:PL 0/1:22,17:39:99:513,0,634 5 122727026 rs6876883 G A 1082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.19;ReadPosRankSum=0.046;SOR=0.464 GT:AD:DP:GQ:PL 0/1:22,41:63:99:1111,0,571 5 122758268 rs6882791 G C 2703.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2732,264,0 5 123983915 rs6862252 G T 1714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-1.686;SOR=0.741 GT:AD:DP:GQ:PL 0/1:91,70:161:99:1743,0,2471 5 123984763 rs7708070 C T 2231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.953;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-1.311;SOR=0.817 GT:AD:DP:GQ:PL 0/1:127,96:223:99:2260,0,2995 5 125696140 rs11241887 G A 4419.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4448,447,0 5 126161690 rs36105360 C T 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=1.091;SOR=0.721 GT:AD:DP:GQ:PL 0/1:64,52:116:99:1181,0,1670 5 126738271 . C T 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=1.37;SOR=0.73 GT:AD:DP:GQ:PL 0/1:90,79:169:99:1707,0,2204 5 126746277 rs31483 C T 5183.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5212,534,0 5 126792974 rs3812052 T A 6828.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.1;ReadPosRankSum=-0.416;SOR=0.251 GT:AD:DP:GQ:PL 1/1:1,242:243:99:6857,687,0 5 126993249 rs45074 G C 4508.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4537,444,0 5 126993263 rs248709 A T 4389.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4418,444,0 5 127614472 rs190450 A G 4529.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.088 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4558,441,0 5 127622983 rs2042327 C T 3621.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3650,380,0 5 127640783 rs27713 G A 1690.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=21.96;ReadPosRankSum=0.548;SOR=0.527 GT:AD:DP:GQ:PL 1/1:5,72:77:99:1719,100,0 5 127685135 rs154001 C T 3716.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3745,387,0 5 128301824 rs2526246 T A 1373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=-2.607;SOR=0.661 GT:AD:DP:GQ:PL 0/1:84,66:150:99:1402,0,2066 5 128301885 rs2526247 T G 1469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.269;SOR=0.724 GT:AD:DP:GQ:PL 0/1:86,63:149:99:1498,0,2241 5 128301971 rs2577541 T C 1879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.853;SOR=0.571 GT:AD:DP:GQ:PL 0/1:77,80:157:99:1908,0,1942 5 128430757 rs1127827 T C 2487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.147;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=6.367;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=0.305;SOR=0.587 GT:AD:DP:GQ:PL 0/1:84,95:179:99:2516,0,1981 5 128844838 rs28630040 A G 1443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.961;SOR=0.842 GT:AD:DP:GQ:PL 0/1:65,69:134:99:1472,0,1411 5 128863471 rs6595908 A G 1753.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1782,186,0 5 129015452 rs30645 T C 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.023;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.36;SOR=0.874 GT:AD:DP:GQ:PL 0/1:49,36:85:99:964,0,1240 5 129100561 rs72792876 T C 432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=0.121;SOR=0.622 GT:AD:DP:GQ:PL 0/1:31,19:50:99:461,0,831 5 129240972 rs33917 G C 3401.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3430,342,0 5 129521126 rs2015018 A G 1820.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1849,180,0 5 130500751 rs2278060 A C 4333.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4362,423,0 5 130766662 rs1291602 T C 2218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.053;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.177;SOR=0.72 GT:AD:DP:GQ:PL 0/1:96,93:189:99:2247,0,2204 5 130831365 rs40400 T C 1159.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.14;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1188,105,0 5 130846190 rs116131520 A C 1300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.312;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-1.514;SOR=0.446 GT:AD:DP:GQ:PL 0/1:58,53:111:99:1329,0,1478 5 130982768 rs26006 A G 3125.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3154,336,0 5 131008194 rs26008 T C 4617.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4646,460,0 5 131066577 rs7729787 A C 2216.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=1.226 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2245,216,0 5 131066725 rs7730228 C A 2121.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2150,210,0 5 131312327 rs370652 G T 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=1.305;SOR=0.671 GT:AD:DP:GQ:PL 0/1:52,37:89:99:748,0,1196 5 131324250 rs3043838 C CTG 4738.73 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.21;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,115:115:99:4776,346,0 5 131396478 rs40401 C T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.259;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.413;SOR=0.983 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1473,0,1858 5 131411460 rs25882 T C 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.397;SOR=0.596 GT:AD:DP:GQ:PL 0/1:57,42:99:99:997,0,1341 5 131602166 rs1007602 T C 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.821;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.1;SOR=0.384 GT:AD:DP:GQ:PL 0/1:30,30:60:99:843,0,629 5 131663062 rs272893 T C 3030.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3059,293,0 5 131670546 rs272879 C G 3872.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3901,387,0 5 131676320 rs1050152 C T 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-3.691;SOR=0.749 GT:AD:DP:GQ:PL 0/1:64,54:118:99:1115,0,1554 5 131719999 rs4551059 A G 3543.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=1.343 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3572,324,0 5 131995964 rs20541 A G 1363.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1392,147,0 5 132098242 rs30510 A G 4747.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4776,480,0 5 132112848 . C A 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=18.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=1.793;SOR=0.142 GT:AD:DP:GQ:PL 0/1:47,84:139:99:1893,0,839 5 132149684 rs40274 G C 9081.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,283:283:99:9110,849,0 5 132150948 rs40470 T G 5583.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5612,541,0 5 132198199 rs254286 G A 2558.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2587,267,0 5 132202716 . GC G 3789.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.88;ClippingRankSum=0;DP=231;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=2.062;QD=16.41;ReadPosRankSum=0.592;SOR=0.556 GT:AD:DP:GQ:PL 0/1:118,113:231:99:3827,0,4065 5 132202744 rs145649482 C T 2546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.439;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=1.392;SOR=0.702 GT:AD:DP:GQ:PL 0/1:100,103:203:99:2575,0,2378 5 133655029 . G GA 84.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.199;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.61;QD=1.02;ReadPosRankSum=-0.343;SOR=0.819 GT:AD:DP:GQ:PL 0/1:68,15:95:99:122,0,1378 5 133657610 rs34094285 G GA 281.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.59;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.87;ReadPosRankSum=-0.97;SOR=0.618 GT:AD:DP:GQ:PL 0/1:25,16:41:99:319,0,511 5 133747354 rs141449831 C G 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=4.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=1.287;SOR=0.46 GT:AD:DP:GQ:PL 0/1:83,98:181:99:2539,0,2119 5 133902288 rs2044318 C T 1275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.024;SOR=0.51 GT:AD:DP:GQ:PL 0/1:53,56:109:99:1304,0,1366 5 133944043 rs201249311 AT A 219.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.432;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=5.281;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.444;QD=2.27;ReadPosRankSum=0.632;SOR=1.281 GT:AD:DP:GQ:PL 0/1:73,24:109:99:257,0,1567 5 134011834 . CT C 44.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.877;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.528;QD=0.67;ReadPosRankSum=0.737;SOR=0.716 GT:AD:DP:GQ:PL 0/1:54,13:78:82:82,0,1317 5 134343661 rs10044000 C T 1557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.298;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.154;SOR=0.869 GT:AD:DP:GQ:PL 0/1:73,66:139:99:1586,0,1614 5 134782414 rs12518053 G T 5313.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5342,504,0 5 134782450 rs12520799 T A 5885.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5914,552,0 5 134782510 rs12520809 T C 6440.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.37;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6469,579,0 5 134782576 rs1031844 T G 7513.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7542,716,0 5 134914233 rs11950696 C T 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.078;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=0.024;SOR=0.763 GT:AD:DP:GQ:PL 0/1:44,42:86:99:1166,0,1135 5 135178124 rs2304075 T C 3880.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3909,399,0 5 135178142 rs6596270 A G 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-0.057;SOR=0.84 GT:AD:DP:GQ:PL 0/1:58,71:129:99:1559,0,1330 5 135207187 rs2304079 G A 2616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.073;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-3.244;SOR=0.511 GT:AD:DP:GQ:PL 0/1:110,111:221:99:2645,0,2616 5 135207382 rs2304080 C T 6904.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.144 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6933,680,0 5 135223713 rs9327734 G T 1004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.216;SOR=0.823 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1033,0,1230 5 135228165 rs2069885 G A 1669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.63;SOR=0.765 GT:AD:DP:GQ:PL 0/1:64,75:139:99:1698,0,1358 5 135286946 rs78234114 A G 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=1.726;SOR=0.788 GT:AD:DP:GQ:PL 0/1:65,81:146:99:1806,0,1419 5 135286996 rs145630645 G C 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=3.236;SOR=0.515 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1570,0,1673 5 135287029 rs31517 T C 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.79;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-1.242;SOR=0.675 GT:AD:DP:GQ:PL 0/1:63,52:115:99:1215,0,1476 5 135498944 rs11318760 AT A 1791.73 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.46;QD=25.97;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1829,207,0 5 135513085 rs55765823 T TC 3386.73 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=41.3;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:3424,259,0 5 135692575 rs2546661 G A 3678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.384;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.267;SOR=0.897 GT:AD:DP:GQ:PL 0/1:174,159:333:99:3707,0,4084 5 136969793 rs2301708 C T 1917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-1.684;SOR=0.661 GT:AD:DP:GQ:PL 0/1:107,97:204:99:1946,0,2489 5 137013350 . CA C 84.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.73;ReadPosRankSum=1.58;SOR=0.502 GT:AD:DP:GQ:PL 0/1:38,11:56:99:122,0,863 5 137028029 rs2905608 T C 5092.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5121,536,0 5 137206560 rs6890689 A C 6070.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6099,600,0 5 137244517 rs1880458 G A 1933.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1962,204,0 5 137259179 rs12187140 T C 844.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,29:29:87:873,87,0 5 137347498 rs10064910 G A 3097.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3126,321,0 5 137419989 rs2040862 C T 1280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=1.371;SOR=0.598 GT:AD:DP:GQ:PL 0/1:81,56:137:99:1309,0,2165 5 137426447 rs6596422 G A 3219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=1.551;SOR=0.732 GT:AD:DP:GQ:PL 0/1:122,127:249:99:3248,0,3095 5 137475787 rs423258 C T 1147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.934;SOR=0.652 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1176,0,1255 5 137476416 rs412051 T C 5618.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5647,549,0 5 137486426 rs217272 T C 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.267;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.028;SOR=0.772 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1652,0,1568 5 137507104 rs11303706 TA T 658.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.409;QD=19.96;ReadPosRankSum=-0.456;SOR=0.818 GT:AD:DP:GQ:PL 0/1:5,28:48:17:608,0,17 5 137513369 rs10671440 G GAA 297.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.157;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.347;QD=7.84;ReadPosRankSum=-1.207;SOR=0.914 GT:AD:DP:GQ:PL 0/1:27,11:43:99:335,0,810 5 137665323 rs3734166 G A 675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.284;SOR=0.693 GT:AD:DP:GQ:PL 0/1:32,32:64:99:704,0,772 5 137688497 rs200772506 G A 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.963;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=1.031;SOR=0.869 GT:AD:DP:GQ:PL 0/1:80,89:169:99:2253,0,2221 5 137708434 rs4835678 C T 4332.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4361,452,0 5 137717213 rs10073922 G A 822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=6.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=2.069;SOR=0.451 GT:AD:DP:GQ:PL 0/1:28,36:64:99:851,0,738 5 137717265 rs6865472 G A 1906.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1935,201,0 5 137754695 rs7726234 T C 4339.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4368,444,0 5 138221989 rs288028 G C 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=1.252;SOR=0.568 GT:AD:DP:GQ:PL 0/1:66,76:142:99:1769,0,1604 5 138266546 rs1059110 G A 709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.351;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-1.013;SOR=0.702 GT:AD:DP:GQ:PL 0/1:53,32:85:99:738,0,1284 5 138456815 rs3088052 T C 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.347;SOR=0.702 GT:AD:DP:GQ:PL 0/1:133,119:252:99:2794,0,3235 5 138713959 rs6596474 A C 7154.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7183,696,0 5 138728483 rs10078623 A G 6335.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.71;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,168:168:99:6364,505,0 5 138732579 rs10900862 C T 7660.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7689,770,0 5 138773090 rs10900864 A G 6976.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7005,680,0 5 138857919 rs1131769 T C 2159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.592;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=6.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.111;SOR=1.007 GT:AD:DP:GQ:PL 0/1:97,83:180:99:2188,0,2364 5 138861146 rs7447927 C G 2430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=1.483;SOR=0.737 GT:AD:DP:GQ:PL 0/1:82,92:174:99:2459,0,2118 5 139227696 rs149093144 C T 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.703;SOR=0.633 GT:AD:DP:GQ:PL 0/1:106,88:196:99:1972,0,2523 5 139260428 rs889022 T C 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-0.51;SOR=0.953 GT:AD:DP:GQ:PL 0/1:39,62:101:99:1471,0,859 5 139745154 rs6860077 T C 3429.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3458,351,0 5 139931628 rs3085220 A AGT 7866.73 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=45.21;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,174:174:99:1|1:139931628_A_AGT:7904,529,0 5 139931629 rs5871740 C CG 7867.73 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.48;SOR=0.88 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,173:173:99:1|1:139931628_A_AGT:7905,529,0 5 139931776 rs60236323 AGG A 5168.73 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.56;SOR=2.033 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,116:116:99:1|1:139931776_AGG_A:5206,349,0 5 139931779 rs10589076 T A 5177.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=2.033 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,116:116:99:1|1:139931776_AGG_A:5206,349,0 5 139936760 rs250426 G T 4781.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=31.67;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4810,449,0 5 139940233 rs250431 G A 3448.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3477,338,0 5 139941228 rs250430 A G 7640.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7669,758,0 5 139941318 rs171632 A G 8349.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8378,804,0 5 140021482 rs11554680 C T 2306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-1.34;SOR=0.6 GT:AD:DP:GQ:PL 0/1:129,97:226:99:2335,0,3317 5 140022212 rs201116062 G C 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.198;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=6.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.407;SOR=0.345 GT:AD:DP:GQ:PL 0/1:63,75:138:99:1695,0,1569 5 140023238 rs17208187 C G 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-1.699;SOR=0.571 GT:AD:DP:GQ:PL 0/1:76,77:153:99:1903,0,1915 5 140048209 rs2251860 T C 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.561;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=7.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.573;SOR=1.06 GT:AD:DP:GQ:PL 0/1:91,85:176:99:2347,0,2359 5 140048267 rs2530245 T C 5646.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5675,565,0 5 140048544 rs2286394 C T 2245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.98;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=6.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.363;SOR=0.73 GT:AD:DP:GQ:PL 0/1:125,100:225:99:2274,0,3269 5 140052271 rs2563333 A G 4303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.137;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=5.797;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.289;QD=13.41;ReadPosRankSum=-0.633;SOR=0.716 GT:AD:DP:GQ:PL 0/1:146,175:321:99:4332,0,3214 5 140054257 rs58302597 C T 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.331;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.938;SOR=0.763 GT:AD:DP:GQ:PL 0/1:60,60:120:99:1447,0,1423 5 140057535 rs2230361 G A 578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.443;SOR=0.392 GT:AD:DP:GQ:PL 0/1:26,27:53:99:607,0,671 5 140073883 rs6883035 G A 657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.515;SOR=0.337 GT:AD:DP:GQ:PL 0/1:19,29:48:99:686,0,464 5 140167463 rs3733710 C T 9584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.638;ClippingRankSum=0;DB;DP=826;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.473;QD=11.63;ReadPosRankSum=0.618;SOR=0.56 GT:AD:DP:GQ:PL 0/1:429,395:824:99:9613,0,11955 5 140168070 rs2240696 A G 4390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.717;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=1.691;SOR=0.584 GT:AD:DP:GQ:PL 0/1:159,165:324:99:4419,0,4184 5 140168151 rs2240695 G T 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.489;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-1.445;SOR=0.777 GT:AD:DP:GQ:PL 0/1:114,112:226:99:2715,0,3281 5 140174622 rs9686540 G A 5469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0;DB;DP=509;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.051;QD=10.75;ReadPosRankSum=0.065;SOR=0.695 GT:AD:DP:GQ:PL 0/1:268,241:509:99:5498,0,6603 5 140174865 rs11167600 G C 9190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.767;ClippingRankSum=0;DB;DP=682;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0.078;QD=13.52;ReadPosRankSum=-1.189;SOR=0.728 GT:AD:DP:GQ:PL 0/1:326,354:680:99:9219,0,8064 5 140175932 rs111743563 A G 10316.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.942;ClippingRankSum=0;DB;DP=803;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-1.232;SOR=0.729 GT:AD:DP:GQ:PL 0/1:389,413:802:99:10345,0,10194 5 140181094 rs251382 C T 7662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.43;ClippingRankSum=0;DB;DP=605;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=0.923;QD=12.75;ReadPosRankSum=0.555;SOR=0.746 GT:AD:DP:GQ:PL 0/1:312,289:601:99:7691,0,8449 5 140181734 rs3733708 A G 3556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.034;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=1.516;SOR=0.639 GT:AD:DP:GQ:PL 0/1:106,127:233:99:3585,0,2705 5 140181892 rs3733707 T C 3903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.409;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=5.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-0.499;SOR=0.493 GT:AD:DP:GQ:PL 0/1:181,149:330:99:3932,0,4979 5 140182101 rs7701755 G T 8758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.873;ClippingRankSum=0;DB;DP=843;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.54;SOR=0.75 GT:AD:DP:GQ:PL 0/1:465,375:840:99:8787,0,12171 5 140183058 rs2240694 G A 4199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0;DB;DP=409;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-1.379;SOR=0.678 GT:AD:DP:GQ:PL 0/1:227,182:409:99:4228,0,5853 5 140186937 rs11167605 G T 3588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0;DB;DP=505;ExcessHet=3.0103;FS=7.75;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-7.08;QD=7.13;ReadPosRankSum=-0.126;SOR=0.649 GT:AD:DP:GQ:PL 0/1:340,163:503:99:3617,0,9426 5 140186979 rs3822355 G A 1474.77 SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.31;ClippingRankSum=0;DB;DP=483;ExcessHet=3.0103;FS=19.84;MLEAC=1;MLEAF=0.5;MQ=59.19;MQRankSum=-12.414;QD=3.07;ReadPosRankSum=-8.505;SOR=2.403 GT:AD:DP:GQ:PGT:PID:PL 0/1:416,65:481:99:0|1:140186979_G_A:1503,0,17416 5 140186980 rs3822354 G A 1678.77 SNP_MQRankSum_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.91;ClippingRankSum=0;DB;DP=485;ExcessHet=3.0103;FS=19.836;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=-12.612;QD=3.48;ReadPosRankSum=-8.873;SOR=2.291 GT:AD:DP:GQ:PGT:PID:PL 0/1:417,66:483:99:0|1:140186979_G_A:1707,0,17485 5 140186981 rs200172095 G GACA 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=10.007;ClippingRankSum=0;DB;DP=484;ExcessHet=3.0103;FS=18.786;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=-12.381;QD=3.73;ReadPosRankSum=-9.274;SOR=2.221 GT:AD:DP:GQ:PL 0/1:414,66:482:99:1818,0,17636 5 140186984 . GC G 1676.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.556;ClippingRankSum=0;DP=479;ExcessHet=3.0103;FS=8.974;MLEAC=1;MLEAF=0.5;MQ=58.83;MQRankSum=-15.559;QD=3.52;ReadPosRankSum=-9.808;SOR=1.501 GT:AD:DP:GQ:PGT:PID:PL 0/1:418,59:477:99:0|1:140186979_G_A:1714,0,17671 5 140186988 . AGG A 1250.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.915;ClippingRankSum=0;DP=467;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=58.57;MQRankSum=-18.491;QD=2.69;ReadPosRankSum=-9.46;SOR=0.701 GT:AD:DP:GQ:PGT:PID:PL 0/1:415,50:465:99:0|1:140186979_G_A:1288,0,17450 5 140187048 rs3822349 G C 2365.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.376;ClippingRankSum=0;DB;DP=534;ExcessHet=3.0103;FS=7.621;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-16.9;QD=4.45;ReadPosRankSum=-3.415;SOR=0.982 GT:AD:DP:GQ:PL 0/1:417,115:532:99:2394,0,11207 5 140187102 rs3822347 A G 4476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.959;ClippingRankSum=0;DB;DP=506;ExcessHet=3.0103;FS=5.159;MLEAC=1;MLEAF=0.5;MQ=57.29;MQRankSum=-11.184;QD=8.88;ReadPosRankSum=3.732;SOR=0.578 GT:AD:DP:GQ:PL 0/1:314,190:504:99:4505,0,8278 5 140187322 rs3822346 C T 2371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.665;SOR=0.782 GT:AD:DP:GQ:PL 0/1:105,96:201:99:2400,0,2877 5 140188383 rs2337987 T G 15302.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.684;ClippingRankSum=0;DB;DP=698;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-3.25;QD=21.92;ReadPosRankSum=0.45;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:297,401:698:99:0|1:140188383_T_G:15331,0,15089 5 140188401 rs2879086 A G 15114.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.862;ClippingRankSum=0;DB;DP=680;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=-3.211;QD=22.33;ReadPosRankSum=1.167;SOR=0.672 GT:AD:DP:GQ:PGT:PID:PL 0/1:284,393:677:99:0|1:140188383_T_G:15143,0,14749 5 140188575 rs2879087 G C 6755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.826;ClippingRankSum=0;DB;DP=545;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-1.575;SOR=0.699 GT:AD:DP:GQ:PL 0/1:286,257:543:99:6784,0,7338 5 140201420 rs11958868 T C 4534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.11;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.31;ReadPosRankSum=-0.442;SOR=0.789 GT:AD:DP:GQ:PL 0/1:155,162:317:99:4563,0,3959 5 140203432 rs4141841 C T 4196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.36;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=3.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=0.215;SOR=0.55 GT:AD:DP:GQ:PL 0/1:148,161:309:99:4225,0,3795 5 140209467 rs7710794 T G 6850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.935;ClippingRankSum=0;DB;DP=508;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.755;SOR=0.738 GT:AD:DP:GQ:PL 0/1:252,256:508:99:6879,0,6380 5 140214361 rs17844307 G A 447.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0;DB;DP=564;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.5;MQ=55;MQRankSum=-14.018;QD=0.8;ReadPosRankSum=-5.621;SOR=0.933 GT:AD:DP:GQ:PL 0/1:487,75:562:99:476,0,13293 5 140214381 rs10067182 G A 5957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.866;ClippingRankSum=0;DB;DP=460;ExcessHet=3.0103;FS=16.208;MLEAC=1;MLEAF=0.5;MQ=53.97;MQRankSum=-8.899;QD=13.01;ReadPosRankSum=-1.355;SOR=1.648 GT:AD:DP:GQ:PL 0/1:240,218:458:99:5986,0,6117 5 140221065 rs62384462 G A 516.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.609;ClippingRankSum=0;DB;DP=771;ExcessHet=3.0103;FS=15.155;MLEAC=1;MLEAF=0.5;MQ=57.69;MQRankSum=-19.851;QD=0.67;ReadPosRankSum=-2.701;SOR=2.449 GT:AD:DP:GQ:PGT:PID:PL 0/1:704,65:769:99:0|1:140221065_G_A:545,0,29868 5 140221071 rs62384463 G T 640.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DB;DP=797;ExcessHet=3.0103;FS=11.641;MLEAC=1;MLEAF=0.5;MQ=57.38;MQRankSum=-19.527;QD=0.81;ReadPosRankSum=-1.979;SOR=2.2 GT:AD:DP:GQ:PGT:PID:PL 0/1:724,71:795:99:0|1:140221065_G_A:669,0,30027 5 140221139 rs3756331 G A 13701.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.563;ClippingRankSum=0;DB;DP=1005;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.76;MQRankSum=-19.651;QD=13.63;ReadPosRankSum=1.101;SOR=0.683 GT:AD:DP:GQ:PL 0/1:402,603:1005:99:13730,0,9385 5 140221195 rs199713478 G C 992.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.426;ClippingRankSum=0;DB;DP=959;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.5;MQ=54.21;MQRankSum=-15.647;QD=1.04;ReadPosRankSum=0.768;SOR=0.975 GT:AD:DP:GQ:PL 0/1:813,144:957:99:1021,0,22065 5 140222157 rs3733705 A C 9428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0;DB;DP=708;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=58.13;MQRankSum=-10.391;QD=13.37;ReadPosRankSum=-0.266;SOR=0.634 GT:AD:DP:GQ:PL 0/1:328,377:705:99:9457,0,8271 5 140222641 rs6580012 A G 10350.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.591;ClippingRankSum=0;DB;DP=759;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=1.504;SOR=0.649 GT:AD:DP:GQ:PL 0/1:359,399:758:99:10379,0,8919 5 140228164 rs251353 C A 5902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0;DB;DP=539;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-1.715;SOR=0.74 GT:AD:DP:GQ:PL 0/1:291,247:538:99:5931,0,7237 5 140228410 rs17844322 A G 5181.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.093;ClippingRankSum=0;DB;DP=495;ExcessHet=3.0103;FS=10.609;MLEAC=1;MLEAF=0.5;MQ=54.69;MQRankSum=-14.176;QD=10.49;ReadPosRankSum=-5.777;SOR=1.374 GT:AD:DP:GQ:PGT:PID:PL 0/1:342,152:494:99:0|1:140228410_A_G:5210,0,16381 5 140228413 rs17844323 C A 5073.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.667;ClippingRankSum=0;DB;DP=480;ExcessHet=3.0103;FS=10.647;MLEAC=1;MLEAF=0.5;MQ=54.51;MQRankSum=-15.093;QD=10.59;ReadPosRankSum=-5.327;SOR=1.339 GT:AD:DP:GQ:PGT:PID:PL 0/1:338,141:479:99:0|1:140228410_A_G:5102,0,16329 5 140229086 rs251354 C G 2391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.446;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.5;MQ=56.48;MQRankSum=2.366;QD=10.35;ReadPosRankSum=2.718;SOR=0.607 GT:AD:DP:GQ:PL 0/1:135,96:231:99:2420,0,3295 5 140229368 rs251355 G C 8063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.822;ClippingRankSum=0;DB;DP=716;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-2.103;SOR=0.749 GT:AD:DP:GQ:PL 0/1:383,332:715:99:8092,0,9406 5 140229526 rs251356 T G 12808.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.029;ClippingRankSum=0;DB;DP=963;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.926;QD=13.3;ReadPosRankSum=-0.912;SOR=0.753 GT:AD:DP:GQ:PL 0/1:447,516:963:99:12837,0,11439 5 140230370 rs369636 A C 3428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.7;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.53;ReadPosRankSum=1.005;SOR=0.953 GT:AD:DP:GQ:PGT:PID:PL 0/1:78,89:167:99:0|1:140230370_A_C:3457,0,4277 5 140230371 rs369639 A C 3428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.04;ReadPosRankSum=0.968;SOR=0.959 GT:AD:DP:GQ:PGT:PID:PL 0/1:76,87:163:99:0|1:140230370_A_C:3457,0,4277 5 140236950 rs251362 C G 10111.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0;DB;DP=878;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-2.144;QD=11.52;ReadPosRankSum=-0.738;SOR=0.765 GT:AD:DP:GQ:PL 0/1:469,409:878:99:10140,0,12321 5 140237109 rs251363 T G 12492.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DB;DP=983;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=58.91;MQRankSum=-11.165;QD=12.71;ReadPosRankSum=-0.513;SOR=0.623 GT:AD:DP:GQ:PL 0/1:502,481:983:99:12521,0,12921 5 140237387 rs251364 T G 5417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.506;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=5.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=1.696;SOR=0.492 GT:AD:DP:GQ:PL 0/1:194,201:395:99:5446,0,5119 5 140237548 rs630162 A G 3182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.077;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=9.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=0.73;SOR=0.877 GT:AD:DP:GQ:PL 0/1:143,124:267:99:3211,0,3656 5 140250252 rs251372 T C 12545.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.571;ClippingRankSum=0;DB;DP=1006;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-2.413;QD=12.5;ReadPosRankSum=-1.211;SOR=0.689 GT:AD:DP:GQ:PL 0/1:538,466:1004:99:12574,0,13499 5 140255792 rs251377 C A 3788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.698;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.439;SOR=0.735 GT:AD:DP:GQ:PL 0/1:141,157:298:99:3817,0,3647 5 140263290 rs251380 T G 12401.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0;DB;DP=884;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=14.08;ReadPosRankSum=0.907;SOR=0.551 GT:AD:DP:GQ:PL 0/1:403,478:881:99:12430,0,10028 5 140307284 rs155361 G A 2331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=1.047;SOR=0.616 GT:AD:DP:GQ:PL 0/1:118,97:215:99:2360,0,3190 5 140307746 rs155820 C G 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=5.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.361;SOR=0.816 GT:AD:DP:GQ:PL 0/1:96,80:176:99:1976,0,2534 5 140307969 rs246074 C G 1676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-1.534;SOR=0.724 GT:AD:DP:GQ:PL 0/1:107,77:184:99:1705,0,2712 5 140346468 rs155364 T A 3427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.176;SOR=0.642 GT:AD:DP:GQ:PL 0/1:176,150:326:99:3456,0,4062 5 140346712 rs155808 T C 2988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.394;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.819;SOR=0.719 GT:AD:DP:GQ:PL 0/1:124,109:233:99:3017,0,3102 5 140347053 rs155807 C T 2583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.827;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=0.081;SOR=0.722 GT:AD:DP:GQ:PL 0/1:93,106:199:99:2612,0,2420 5 140474756 rs31853 G A 1474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=0.643;SOR=0.668 GT:AD:DP:GQ:PL 0/1:72,67:139:99:1503,0,1743 5 140475980 rs17844376 G A 13699.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0;DB;DP=1249;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=56.21;MQRankSum=-6.96;QD=10.99;ReadPosRankSum=3.94;SOR=0.599 GT:AD:DP:GQ:PL 0/1:665,581:1246:99:13728,0,16587 5 140476060 rs17844377 C T 13346.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.599;ClippingRankSum=0;DB;DP=965;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=48.64;MQRankSum=7.495;QD=13.85;ReadPosRankSum=0.981;SOR=0.626 GT:AD:DP:GQ:PL 0/1:425,539:964:99:13375,0,10707 5 140476395 rs384081 T C 7022.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=12.368;ClippingRankSum=0;DB;DP=756;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.5;MQ=54.44;MQRankSum=-24.849;QD=9.29;ReadPosRankSum=-5.532;SOR=0.563 GT:AD:DP:GQ:PL 0/1:503,253:756:99:7051,0,23466 5 140476396 rs429198 G T 9211.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.691;ClippingRankSum=0;DB;DP=760;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.5;MQ=54.48;MQRankSum=-24.906;QD=12.12;ReadPosRankSum=-5.884;SOR=0.541 GT:AD:DP:GQ:PL 0/1:501,259:760:99:9240,0,14095 5 140476630 rs141291764 G A 1083.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.89;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=24.824;MLEAC=1;MLEAF=0.5;MQ=36.5;MQRankSum=-1.907;QD=2.96;ReadPosRankSum=-2.172;SOR=2.13 GT:AD:DP:GQ:PL 0/1:298,68:366:99:1112,0,9764 5 140480355 rs31849 A G 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.075;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=0.265;SOR=0.88 GT:AD:DP:GQ:PL 0/1:79,80:159:99:2081,0,1867 5 140480578 rs17844387 A G 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.561;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=1.921;SOR=0.65 GT:AD:DP:GQ:PL 0/1:82,80:162:99:2037,0,1967 5 140481594 rs17844392 T C 9803.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.78;ClippingRankSum=0;DB;DP=725;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.5;MQ=56.95;MQRankSum=-12.789;QD=13.56;ReadPosRankSum=-1.809;SOR=0.55 GT:AD:DP:GQ:PL 0/1:344,379:723:99:9832,0,8532 5 140481833 rs13157538 A G 14500.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.795;ClippingRankSum=0;DB;DP=1025;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=57.06;MQRankSum=-13.863;QD=14.15;ReadPosRankSum=2.566;SOR=0.647 GT:AD:DP:GQ:PGT:PID:PL 0/1:628,397:1025:99:0|1:140481833_A_G:14529,0,25205 5 140481841 rs13161592 T C 14359.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.508;ClippingRankSum=0;DB;DP=1007;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.5;MQ=56.68;MQRankSum=-14.527;QD=14.26;ReadPosRankSum=1.15;SOR=0.798 GT:AD:DP:GQ:PGT:PID:PL 0/1:617,390:1007:99:0|1:140481833_A_G:14388,0,25182 5 140481913 rs17844397 C T 7829.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.302;ClippingRankSum=0;DB;DP=891;ExcessHet=3.0103;FS=4.272;MLEAC=1;MLEAF=0.5;MQ=49.2;MQRankSum=-16.424;QD=8.79;ReadPosRankSum=-1.664;SOR=1.054 GT:AD:DP:GQ:PL 0/1:561,330:891:99:7858,0,15129 5 140482013 rs13174972 G A 5563.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.178;ClippingRankSum=0;DB;DP=764;ExcessHet=3.0103;FS=2.595;MLEAC=1;MLEAF=0.5;MQ=43.96;MQRankSum=-15.595;QD=7.29;ReadPosRankSum=1.654;SOR=0.797 GT:AD:DP:GQ:PL 0/1:503,260:763:99:5592,0,13174 5 140482102 rs3896009 A G 4758.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=12.864;ClippingRankSum=0;DB;DP=750;ExcessHet=3.0103;FS=12.845;MLEAC=1;MLEAF=0.5;MQ=50.14;MQRankSum=-21.284;QD=6.37;ReadPosRankSum=-2.513;SOR=1.527 GT:AD:DP:GQ:PL 0/1:554,193:747:99:4787,0,14697 5 140482312 rs429364 A G 4848.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.049;ClippingRankSum=0;DB;DP=612;ExcessHet=3.0103;FS=16.545;MLEAC=1;MLEAF=0.5;MQ=55.44;MQRankSum=-16.786;QD=7.95;ReadPosRankSum=-4.695;SOR=1.709 GT:AD:DP:GQ:PL 0/1:406,204:610:99:4877,0,10803 5 140482342 rs17844403 T C 2205.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=12.241;ClippingRankSum=0;DB;DP=513;ExcessHet=3.0103;FS=40.416;MLEAC=1;MLEAF=0.5;MQ=53.39;MQRankSum=-15.179;QD=4.32;ReadPosRankSum=-2.991;SOR=3.459 GT:AD:DP:GQ:PL 0/1:410,101:511:99:2234,0,10606 5 140482483 rs31848 G A 6674.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=2.712;MLEAC=2;MLEAF=1;MQ=37.37;MQRankSum=2.291;QD=34.05;ReadPosRankSum=0.097;SOR=0.285 GT:AD:DP:GQ:PL 1/1:2,194:196:99:6703,529,0 5 140502177 rs3776100 G A 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=3.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-0.665;SOR=0.468 GT:AD:DP:GQ:PL 0/1:78,88:166:99:2218,0,2060 5 140502841 rs3776099 G A 4508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0;DB;DP=376;ExcessHet=3.0103;FS=6.922;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=2.166;SOR=0.455 GT:AD:DP:GQ:PL 0/1:195,181:376:99:4537,0,5299 5 140503154 rs147934595 C A 10981.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.134;ClippingRankSum=0;DB;DP=977;ExcessHet=3.0103;FS=1.12;MLEAC=1;MLEAF=0.5;MQ=55.11;MQRankSum=-25.398;QD=11.26;ReadPosRankSum=1.483;SOR=0.813 GT:AD:DP:GQ:PL 0/1:553,422:975:99:11010,0,14562 5 140503237 rs246669 A G 10230.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.858;ClippingRankSum=0;DB;DP=991;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.83;MQRankSum=-21.173;QD=10.39;ReadPosRankSum=4.476;SOR=0.682 GT:AD:DP:GQ:PL 0/1:576,409:985:99:10259,0,13841 5 140503443 rs17844416 C G 13343.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=1070;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.5;MQ=53.95;MQRankSum=-11.977;QD=12.48;ReadPosRankSum=0.72;SOR=0.791 GT:AD:DP:GQ:PL 0/1:535,534:1069:99:13372,0,13661 5 140503531 rs17844417 C T 13357.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=1013;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.3;MQRankSum=-5.436;QD=13.23;ReadPosRankSum=-0.135;SOR=0.667 GT:AD:DP:GQ:PL 0/1:481,529:1010:99:13386,0,12179 5 140516795 rs246726 C T 29547.8 PASS AC=2;AF=1;AN=2;DB;DP=950;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.44;QD=31.17;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,948:948:99:29576,2839,0 5 140517174 rs400562 T C 23991.8 PASS AC=2;AF=1;AN=2;DB;DP=758;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.9;QD=31.69;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,757:757:99:24020,2269,0 5 140530529 rs3776096 G A 2907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=0.137;SOR=0.496 GT:AD:DP:GQ:PL 0/1:95,108:203:99:2936,0,2575 5 140531175 rs246707 T C 19037.8 PASS AC=2;AF=1;AN=2;DB;DP=583;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.13;QD=32.77;SOR=1.221 GT:AD:DP:GQ:PL 1/1:0,581:581:99:19066,1744,0 5 140531592 rs55834559 C T 10236.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.635;ClippingRankSum=0;DB;DP=755;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.5;MQ=45.91;MQRankSum=0.421;QD=13.56;ReadPosRankSum=0.051;SOR=0.577 GT:AD:DP:GQ:PL 0/1:371,384:755:99:10265,0,10599 5 140531746 rs246703 C G 30718.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.954;ClippingRankSum=0;DB;DP=952;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.51;MQRankSum=-0.443;QD=32.3;ReadPosRankSum=-0.584;SOR=0.264 GT:AD:DP:GQ:PL 1/1:1,950:951:99:30747,2843,0 5 140553581 rs2910313 G C 7027.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.47;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,210:210:99:7056,626,0 5 140553856 rs2907330 G A 25050.8 PASS AC=2;AF=1;AN=2;DB;DP=820;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.77;QD=30.62;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,818:818:99:25079,2454,0 5 140554006 rs2907329 C G 34725.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.187;ClippingRankSum=0;DB;DP=1102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.83;MQRankSum=11.694;QD=31.57;ReadPosRankSum=2.181;SOR=1.053 GT:AD:DP:GQ:PL 1/1:2,1098:1100:99:34754,3251,0 5 140554189 rs4912601 G C 11505.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.962;ClippingRankSum=0;DB;DP=911;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=56.86;MQRankSum=-1.622;QD=12.69;ReadPosRankSum=0.368;SOR=0.597 GT:AD:DP:GQ:PL 0/1:462,445:910:99:11534,0,12501 5 140554481 rs1811237 G T 10245.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0;DB;DP=913;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.432;QD=11.38;ReadPosRankSum=-0.358;SOR=0.78 GT:AD:DP:GQ:PL 0/1:456,444:900:99:10274,0,11384 5 140554562 rs2910314 A T 7820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.651;ClippingRankSum=0;DB;DP=613;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=1.425;QD=12.8;ReadPosRankSum=0.966;SOR=0.586 GT:AD:DP:GQ:PL 0/1:304,307:611:99:7849,0,7606 5 140554606 rs11741863 T C 6062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.434;ClippingRankSum=0;DB;DP=525;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.447;SOR=0.641 GT:AD:DP:GQ:PL 0/1:278,247:525:99:6091,0,6966 5 140554808 rs6892507 T A 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.006;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=1.356;SOR=0.533 GT:AD:DP:GQ:PL 0/1:45,51:96:99:1201,0,1147 5 140558212 rs2950845 A C 2725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=13.639;MLEAC=1;MLEAF=0.5;MQ=50.03;MQRankSum=2.069;QD=18.93;ReadPosRankSum=0.115;SOR=0.192 GT:AD:DP:GQ:PL 0/1:43,101:144:99:2754,0,980 5 140558308 rs2910316 T C 529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.289;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=14.96;MLEAC=1;MLEAF=0.5;MQ=55.75;MQRankSum=-9.333;QD=4.2;ReadPosRankSum=-1.186;SOR=1.773 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,21:126:99:0|1:140558308_T_C:558,0,4196 5 140558313 . T TCC 762.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.983;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=15.208;MLEAC=1;MLEAF=0.5;MQ=56.36;MQRankSum=-10.175;QD=6.3;ReadPosRankSum=-0.74;SOR=1.766 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,21:121:99:0|1:140558308_T_C:800,0,4400 5 140558315 . GTC G 834.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.677;ClippingRankSum=0;DP=129;ExcessHet=3.0103;FS=13.625;MLEAC=1;MLEAF=0.5;MQ=56.76;MQRankSum=-10.02;QD=6.47;ReadPosRankSum=-0.954;SOR=1.523 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,25:129:99:0|1:140558308_T_C:872,0,4362 5 140558326 rs2910317 T C 978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.545;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=17.282;MLEAC=1;MLEAF=0.5;MQ=57.26;MQRankSum=-8.711;QD=7.09;ReadPosRankSum=-1.065;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,35:138:99:0|1:140558308_T_C:1007,0,4127 5 140558345 rs2950844 G C 3024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=8.35;MLEAC=1;MLEAF=0.5;MQ=57.59;MQRankSum=7.232;QD=17.9;ReadPosRankSum=0.149;SOR=0.573 GT:AD:DP:GQ:PL 0/1:56,113:169:99:3053,0,1260 5 140559320 rs17844498 G A 12252.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0;DB;DP=1051;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.5;MQ=48.34;MQRankSum=0.398;QD=11.69;ReadPosRankSum=0.492;SOR=0.726 GT:AD:DP:GQ:PL 0/1:551,497:1048:99:12281,0,14540 5 140559532 rs2740582 G C 9696.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.359;ClippingRankSum=0;DB;DP=873;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.78;MQRankSum=-18.577;QD=11.11;ReadPosRankSum=-1.404;SOR=0.679 GT:AD:DP:GQ:PL 0/1:505,368:873:99:9725,0,14160 5 140559596 rs2697541 T G 9782.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.485;ClippingRankSum=0;DB;DP=891;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=57.32;MQRankSum=-13.79;QD=10.98;ReadPosRankSum=1.929;SOR=0.632 GT:AD:DP:GQ:PL 0/1:493,398:891:99:9811,0,12485 5 140563579 rs17844646 C T 8773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0;DB;DP=793;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.3;MQRankSum=-3.529;QD=11.08;ReadPosRankSum=-1.738;SOR=0.698 GT:AD:DP:GQ:PL 0/1:420,372:792:99:8802,0,10283 5 140563931 rs13158239 T C 4247.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.359;ClippingRankSum=0;DB;DP=719;ExcessHet=3.0103;FS=11.458;MLEAC=1;MLEAF=0.5;MQ=51.87;MQRankSum=-21.064;QD=5.91;ReadPosRankSum=-3.625;SOR=1.334 GT:AD:DP:GQ:PL 0/1:542,177:719:99:4276,0,14352 5 140564048 rs17844664 G C 7634.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0;DB;DP=803;ExcessHet=3.0103;FS=8.363;MLEAC=1;MLEAF=0.5;MQ=53.7;MQRankSum=-14.962;QD=9.51;ReadPosRankSum=-0.124;SOR=0.878 GT:AD:DP:GQ:PL 0/1:486,317:803:99:7663,0,13612 5 140564088 rs13176519 C T 9291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.715;ClippingRankSum=0;DB;DP=904;ExcessHet=3.0103;FS=3.236;MLEAC=1;MLEAF=0.5;MQ=56.27;MQRankSum=-9.189;QD=10.29;ReadPosRankSum=0.292;SOR=0.755 GT:AD:DP:GQ:PL 0/1:501,402:903:99:9320,0,13271 5 140564263 rs17844666 C T 7409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0;DB;DP=655;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-0.095;QD=11.33;ReadPosRankSum=-0.272;SOR=0.726 GT:AD:DP:GQ:PL 0/1:349,305:654:99:7438,0,9057 5 140567264 rs2740588 G T 2463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=4.029;MLEAC=1;MLEAF=0.5;MQ=57.1;MQRankSum=-0.755;QD=12.26;ReadPosRankSum=-1.561;SOR=0.994 GT:AD:DP:GQ:PL 0/1:103,98:201:99:2492,0,2570 5 140567445 rs17844512 A G 3067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.77;MQRankSum=-5.459;QD=12.62;ReadPosRankSum=-0.628;SOR=0.706 GT:AD:DP:GQ:PL 0/1:116,127:243:99:3096,0,2737 5 140568026 rs2697531 T C 2203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=5.307;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=-0.048;QD=12.31;ReadPosRankSum=-0.107;SOR=0.427 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,93:179:99:0|1:140568026_T_C:2232,0,2203 5 140568034 rs33974901 C CA 7222.73 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=41.27;SOR=1.172 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,175:175:99:1|1:140568026_T_C:7260,533,0 5 140568998 rs1811235 C T 7839.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.854;ClippingRankSum=0;DB;DP=886;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.5;MQ=52.5;MQRankSum=-14.648;QD=8.85;ReadPosRankSum=-0.178;SOR=0.52 GT:AD:DP:GQ:PL 0/1:550,336:886:99:7868,0,15595 5 140572668 rs597064 C T 2688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.09;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-1.005;QD=12.06;ReadPosRankSum=0.945;SOR=0.912 GT:AD:DP:GQ:PL 0/1:113,110:223:99:2717,0,3001 5 140572763 rs2907323 C G 2687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.537;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=-0.166;QD=11.29;ReadPosRankSum=0.161;SOR=0.674 GT:AD:DP:GQ:PL 0/1:130,108:238:99:2716,0,3392 5 140573439 rs610836 G C 5625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.198;ClippingRankSum=0;DB;DP=509;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=57.25;MQRankSum=-9.572;QD=11.07;ReadPosRankSum=2.15;SOR=0.755 GT:AD:DP:GQ:PGT:PID:PL 0/1:347,161:508:99:0|1:140573439_G_C:5654,0,14094 5 140573442 rs622424 C G 5649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.965;ClippingRankSum=0;DB;DP=509;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.95;MQRankSum=-9.855;QD=11.12;ReadPosRankSum=1.774;SOR=0.712 GT:AD:DP:GQ:PGT:PID:PL 0/1:348,160:508:99:0|1:140573439_G_C:5678,0,14092 5 140573525 rs146421486 C G 10582.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.091;ClippingRankSum=0;DB;DP=697;ExcessHet=3.0103;FS=2.48;MLEAC=1;MLEAF=0.5;MQ=48.7;MQRankSum=6.692;QD=15.18;ReadPosRankSum=-0.277;SOR=0.543 GT:AD:DP:GQ:PL 0/1:288,409:697:99:10611,0,7458 5 140573754 rs702386 A C 34096.8 PASS AC=2;AF=1;AN=2;DB;DP=1105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.32;QD=30.86;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,1105:1105:99:34125,3312,0 5 140580931 rs799834 C G 13230.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.269;ClippingRankSum=0;DB;DP=971;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.5;MQ=57.49;MQRankSum=-11.092;QD=13.64;ReadPosRankSum=-0.081;SOR=0.534 GT:AD:DP:GQ:PL 0/1:478,492:970:99:13259,0,12882 5 140581220 rs799833 C A 8132.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.592;ClippingRankSum=0;DB;DP=623;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.5;MQ=36.55;MQRankSum=-1.161;QD=13.08;ReadPosRankSum=-0.087;SOR=0.542 GT:AD:DP:GQ:PL 0/1:307,315:622:99:8161,0,8464 5 140581510 rs638054 G T 8392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=728;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=2.058;QD=11.53;ReadPosRankSum=0.379;SOR=0.659 GT:AD:DP:GQ:PL 0/1:373,355:728:99:8421,0,9235 5 140589738 rs2910327 C T 4698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.509;ClippingRankSum=0;DB;DP=397;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.093;QD=11.84;ReadPosRankSum=-1.613;SOR=0.581 GT:AD:DP:GQ:PL 0/1:217,180:397:99:4727,0,6218 5 140590766 rs2910006 A G 4732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.805;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.12;ReadPosRankSum=-1.194;SOR=0.696 GT:AD:DP:GQ:PL 0/1:143,170:313:99:4761,0,3406 5 140594442 rs17844607 A G 658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=9.871;MLEAC=1;MLEAF=0.5;MQ=58.36;MQRankSum=-12.337;QD=2.62;ReadPosRankSum=1.09;SOR=1.385 GT:AD:DP:GQ:PL 0/1:204,47:251:99:687,0,5825 5 140594466 rs17844608 G A 641.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=12.491;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=-13.88;QD=2.71;ReadPosRankSum=-1.053;SOR=1.595 GT:AD:DP:GQ:PGT:PID:PL 0/1:206,31:237:99:0|1:140594466_G_A:670,0,12855 5 140594467 rs17844609 G A 638.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.233;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=10.852;MLEAC=1;MLEAF=0.5;MQ=58.56;MQRankSum=-13.97;QD=2.66;ReadPosRankSum=-1.038;SOR=1.606 GT:AD:DP:GQ:PGT:PID:PL 0/1:209,31:240:99:0|1:140594466_G_A:667,0,12888 5 140594470 rs17844610 G A 641.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=11.466;MLEAC=1;MLEAF=0.5;MQ=58.53;MQRankSum=-14.679;QD=2.72;ReadPosRankSum=-1.093;SOR=1.595 GT:AD:DP:GQ:PGT:PID:PL 0/1:208,28:236:99:0|1:140594466_G_A:670,0,12841 5 140595106 rs2910329 C G 8374.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DB;DP=796;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=55.78;MQRankSum=-12.725;QD=10.55;ReadPosRankSum=0.586;SOR=0.585 GT:AD:DP:GQ:PL 0/1:447,347:794:99:8403,0,11107 5 140595183 rs2910330 G T 9721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.935;ClippingRankSum=0;DB;DP=843;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.5;MQ=56.08;MQRankSum=-11.863;QD=11.56;ReadPosRankSum=0.103;SOR=0.785 GT:AD:DP:GQ:PL 0/1:477,364:841:99:9750,0,12284 5 140595375 rs2910331 C T 13568.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=1116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.07;MQRankSum=1.153;QD=12.17;ReadPosRankSum=-0.454;SOR=0.73 GT:AD:DP:GQ:PL 0/1:551,564:1115:99:13597,0,13426 5 140595625 rs2910005 G A 10812.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.53;ClippingRankSum=0;DB;DP=892;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=53.02;MQRankSum=2.345;QD=12.16;ReadPosRankSum=-1.133;SOR=0.727 GT:AD:DP:GQ:PL 0/1:456,433:889:99:10841,0,12197 5 140604721 rs2910003 C A 11206.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0;DB;DP=940;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.58;MQRankSum=-0.468;QD=11.92;ReadPosRankSum=1.526;SOR=0.654 GT:AD:DP:GQ:PL 0/1:475,465:940:99:11235,0,11909 5 140605030 rs650955 T G 18399.8 PASS AC=2;AF=1;AN=2;DB;DP=585;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.78;QD=31.51;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,584:584:99:18428,1753,0 5 140605078 rs2907322 C T 8486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0;DB;DP=680;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=53.04;MQRankSum=-2.09;QD=12.5;ReadPosRankSum=1.973;SOR=0.631 GT:AD:DP:GQ:PL 0/1:335,344:679:99:8515,0,8390 5 140626566 rs618506 A C 12533.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0;DB;DP=688;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.43;MQRankSum=0.086;QD=18.24;ReadPosRankSum=-0.057;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:358,329:687:99:0|1:140626566_A_C:12562,0,13915 5 140626571 rs652104 C A 12622.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.72;ClippingRankSum=0;DB;DP=690;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.49;MQRankSum=-0.108;QD=18.32;ReadPosRankSum=-0.042;SOR=0.662 GT:AD:DP:GQ:PGT:PID:PL 0/1:360,329:689:99:0|1:140626566_A_C:12651,0,14022 5 140626627 rs618096 G A 24605.8 PASS AC=2;AF=1;AN=2;DB;DP=778;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.33;QD=31.71;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,776:776:99:24634,2327,0 5 140626767 rs3096081 C T 7698.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.312;ClippingRankSum=0;DB;DP=919;ExcessHet=3.0103;FS=4.16;MLEAC=1;MLEAF=0.5;MQ=55.41;MQRankSum=-21.367;QD=8.4;ReadPosRankSum=1.412;SOR=0.65 GT:AD:DP:GQ:PL 0/1:559,358:917:99:7727,0,15499 5 140626790 rs3096082 A C 6879.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.601;ClippingRankSum=0;DB;DP=943;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.5;MQ=52.74;MQRankSum=-17.159;QD=7.3;ReadPosRankSum=0.843;SOR=0.705 GT:AD:DP:GQ:PL 0/1:617,326:943:99:6908,0,23824 5 140626797 rs145820167 G T 13915.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.267;ClippingRankSum=0;DB;DP=934;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.5;MQ=52.11;MQRankSum=20.089;QD=14.9;ReadPosRankSum=3.588;SOR=0.666 GT:AD:DP:GQ:PL 0/1:359,575:934:99:13944,0,12545 5 140683265 rs11952797 G A 3753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.212;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.164;SOR=0.835 GT:AD:DP:GQ:PL 0/1:169,153:322:99:3782,0,4184 5 140699057 rs2230133 G C 2553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.466;SOR=0.821 GT:AD:DP:GQ:PL 0/1:113,103:216:99:2582,0,2765 5 140710705 rs2472647 G A 4688.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=1.362 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4717,432,0 5 140712210 rs62378403 G T 8294.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=738;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.5;MQ=51.83;MQRankSum=-24.845;QD=11.24;ReadPosRankSum=3.395;SOR=0.597 GT:AD:DP:GQ:PL 0/1:409,329:738:99:8323,0,11141 5 140720516 rs35592458 C G 10778.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.713;ClippingRankSum=0;DB;DP=837;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=50.01;MQRankSum=-6.672;QD=12.88;ReadPosRankSum=-1.526;SOR=0.645 GT:AD:DP:GQ:PL 0/1:411,426:837:99:10807,0,11128 5 140725828 rs7736541 C T 8992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=693;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.5;MQ=58.56;MQRankSum=-3.215;QD=12.98;ReadPosRankSum=1.954;SOR=0.72 GT:AD:DP:GQ:PL 0/1:336,357:693:99:9021,0,8551 5 140750044 rs6860609 T C 5387.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5416,546,0 5 140751128 rs2240697 C G 2171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.48;ReadPosRankSum=-0.894;SOR=0.635 GT:AD:DP:GQ:PL 0/1:69,81:150:99:2200,0,1971 5 140763029 rs2072315 A G 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.947;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.126;SOR=1.031 GT:AD:DP:GQ:PL 0/1:112,80:192:99:2113,0,2908 5 140772427 rs726684 T G 2400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.528;SOR=0.697 GT:AD:DP:GQ:PL 0/1:140,106:246:99:2429,0,3644 5 140774288 rs4912749 T C 19887.8 PASS AC=2;AF=1;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.14;QD=32.03;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,621:621:99:19916,1862,0 5 140774689 rs72790033 T C 3461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.99;ReadPosRankSum=-0.25;SOR=0.865 GT:AD:DP:GQ:PL 0/1:94,137:231:99:3490,0,1965 5 140783596 rs1363448 C T 1015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=-0.716;SOR=0.77 GT:AD:DP:GQ:PL 0/1:70,48:118:99:1044,0,1780 5 140793007 rs4912751 A G 4839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.911;ClippingRankSum=0;DB;DP=417;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=1.309;SOR=0.78 GT:AD:DP:GQ:PL 0/1:213,203:416:99:4868,0,4902 5 140795307 . GTTTTTT G 185.73 PASS AC=1;AF=0.5;AN=2;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=46.43;SOR=1.863 GT:AD:DP:GQ:PL 0/1:0,4:8:75:187,0,75 5 140797630 rs2015825 G T 4578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=3.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=1.341;SOR=0.532 GT:AD:DP:GQ:PL 0/1:193,194:387:99:4607,0,5023 5 140798639 rs17208397 G C 2532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.441;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=-1.714;SOR=0.786 GT:AD:DP:GQ:PL 0/1:83,95:178:99:2561,0,2072 5 140803317 rs57089276 T TG 122.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.201;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0;QD=5.58;ReadPosRankSum=2.868;SOR=0.307 GT:AD:DP:GQ:PL 0/1:14,8:22:99:160,0,293 5 140856265 rs2075661 G C 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.637;SOR=0.652 GT:AD:DP:GQ:PL 0/1:121,94:215:99:2357,0,3153 5 140857798 rs1423148 T C 1772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.096;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-1.011;SOR=0.748 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1801,0,2046 5 140858245 rs3805695 C T 1564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=2.717;SOR=1.082 GT:AD:DP:GQ:PL 0/1:64,65:129:99:1593,0,1624 5 140867123 rs151293422 A G 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.739;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.648;SOR=0.756 GT:AD:DP:GQ:PL 0/1:98,97:195:99:2489,0,2354 5 140869003 rs1002519 T C 5054.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5083,482,0 5 140870516 rs2074912 A G 5298.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5327,512,0 5 140870949 rs918558 G T 4269.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4298,414,0 5 140871425 rs17208425 A G 4535.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4564,426,0 5 140953563 rs5871778 T TGGA 2719.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.352;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=2.24;QD=14.17;ReadPosRankSum=0.026;SOR=0.953 GT:AD:DP:GQ:PL 0/1:112,80:203:99:2757,0,4263 5 140955777 rs2302103 C T 2309.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2338,248,0 5 141014494 rs2530223 T C 3787.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3816,366,0 5 141016288 rs1421896 T G 4728.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.19;SOR=0.961 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,107:107:99:1|1:141016276_T_C:4757,325,0 5 141036337 rs7703648 A G 6587.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.336 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6616,635,0 5 141051236 rs12514851 C T 6537.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6566,669,0 5 141059158 rs1031904 C G 2836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=0.349;SOR=0.877 GT:AD:DP:GQ:PL 0/1:95,116:211:99:2865,0,2296 5 141059649 rs417503 A G 4419.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.407;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.97;ReadPosRankSum=0.148;SOR=1.012 GT:AD:DP:GQ:PL 1/1:2,156:158:99:4448,408,0 5 141059868 rs11167756 T C 3678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.586;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=5.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.025;SOR=0.47 GT:AD:DP:GQ:PL 0/1:163,136:299:99:3707,0,3895 5 141243646 rs3797054 A G 2004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-0.218;SOR=0.781 GT:AD:DP:GQ:PL 0/1:74,86:160:99:2033,0,1823 5 141307833 rs10036567 T C 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.909;SOR=0.507 GT:AD:DP:GQ:PL 0/1:101,84:185:99:1977,0,2645 5 141309265 rs10078802 C T 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.947;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=0.101;SOR=0.696 GT:AD:DP:GQ:PL 0/1:134,86:220:99:2054,0,3376 5 141325249 rs105633 T C 7327.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7356,728,0 5 141335241 rs164073 A G 1977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.419;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.787;SOR=0.602 GT:AD:DP:GQ:PL 0/1:103,68:171:99:2006,0,2669 5 141335284 rs164074 G A 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=7.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=4.563;SOR=0.834 GT:AD:DP:GQ:PL 0/1:133,77:210:99:1926,0,3682 5 141335682 rs114449118 C T 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.757;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-0.027;SOR=0.643 GT:AD:DP:GQ:PL 0/1:89,80:169:99:2073,0,2303 5 141336264 rs164075 G T 1601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.084;SOR=0.779 GT:AD:DP:GQ:PL 0/1:86,66:152:99:1630,0,2343 5 141337126 rs164076 C T 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=1.121;SOR=0.515 GT:AD:DP:GQ:PL 0/1:120,84:204:99:1869,0,3203 5 141337225 rs164077 A G 1747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-1.037;SOR=0.617 GT:AD:DP:GQ:PL 0/1:110,78:188:99:1776,0,2836 5 141364511 rs252099 A G 2222.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=1.15 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2251,230,0 5 141391532 rs164080 G A 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.172;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.283;SOR=0.714 GT:AD:DP:GQ:PL 0/1:86,64:150:99:1449,0,2122 5 141975067 rs34003 A C 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.286;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=-1.995;SOR=0.853 GT:AD:DP:GQ:PL 0/1:38,42:80:99:1119,0,849 5 142254679 rs185200 A G 1058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.454;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=1.051;SOR=0.405 GT:AD:DP:GQ:PL 0/1:34,43:77:99:1087,0,809 5 142416741 rs192194 T C 2230.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2259,219,0 5 142421415 rs2270068 T G 3999.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.256;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.17;ReadPosRankSum=-0.346;SOR=0.307 GT:AD:DP:GQ:PL 1/1:1,141:142:99:4028,415,0 5 142513686 rs246607 A G 3004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.265;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=0.273;SOR=0.809 GT:AD:DP:GQ:PL 0/1:98,114:212:99:3033,0,2471 5 142593652 rs258819 C T 1696.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1725,168,0 5 142661490 rs6196 A G 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=1.018;SOR=0.511 GT:AD:DP:GQ:PL 0/1:47,69:116:99:1654,0,1006 5 142680344 rs6188 C A 1398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-2.354;SOR=0.84 GT:AD:DP:GQ:PL 0/1:51,56:107:99:1427,0,1235 5 145246085 rs2569006 T G 3060.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3089,323,0 5 145439472 rs148067714 C T 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=10.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.435;SOR=1.374 GT:AD:DP:GQ:PL 0/1:105,97:202:99:2338,0,2744 5 145439647 rs2962525 T C 8695.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8724,887,0 5 145477855 rs6877277 T C 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.159;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=2.201;SOR=0.855 GT:AD:DP:GQ:PL 0/1:67,65:132:99:1674,0,1682 5 145483844 rs12187913 A T 1355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.125;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.86;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=0.479;SOR=0.454 GT:AD:DP:GQ:PL 0/1:40,53:93:99:1384,0,946 5 145499996 rs10988 C T 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.059;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-1.147;SOR=0.665 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1471,0,1474 5 145506100 rs11540216 G A 190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.5;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.98;ReadPosRankSum=-0.44;SOR=0.929 GT:AD:DP:GQ:PL 0/1:52,12:64:99:219,0,1311 5 145508340 rs2895647 A G 733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.41;ReadPosRankSum=0.591;SOR=0.67 GT:AD:DP:GQ:PL 0/1:63,36:99:99:762,0,1663 5 145508636 rs61732383 T C 1568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.168;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.72;QD=14.94;ReadPosRankSum=-1.549;SOR=0.508 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,43:105:99:0|1:145508636_T_C:1597,0,2917 5 145508637 rs61732382 A C 1568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.989;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.72;QD=14.94;ReadPosRankSum=-1.509;SOR=0.508 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,43:105:99:0|1:145508636_T_C:1597,0,2917 5 145508688 rs67107752 AAAAAAG A 947.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.317;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.859;QD=13.16;ReadPosRankSum=-0.023;SOR=0.62 GT:AD:DP:GQ:PL 0/1:45,27:72:99:985,0,3153 5 145509573 rs11953517 G A 1553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.504;SOR=0.658 GT:AD:DP:GQ:PL 0/1:78,68:146:99:1582,0,1916 5 145509728 rs17104268 A C 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=0.914;SOR=0.68 GT:AD:DP:GQ:PL 0/1:48,60:108:99:1448,0,1091 5 145519821 rs17493851 G A 572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.722;SOR=0.73 GT:AD:DP:GQ:PL 0/1:30,26:56:99:601,0,783 5 145523105 rs11540217 G A 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.022;SOR=0.518 GT:AD:DP:GQ:PL 0/1:68,74:142:99:1783,0,1618 5 145539996 rs11540214 T G 881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.573;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.16;ReadPosRankSum=-0.315;SOR=0.645 GT:AD:DP:GQ:PL 0/1:63,45:108:99:910,0,1378 5 145543972 rs3763373 G A 878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=-0.157;SOR=0.666 GT:AD:DP:GQ:PL 0/1:62,40:102:99:907,0,1666 5 145547839 rs72822293 T C 746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.21;ReadPosRankSum=1.7;SOR=0.497 GT:AD:DP:GQ:PL 0/1:56,35:91:99:775,0,1344 5 145643048 rs7729098 G A 3061.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3090,294,0 5 145650597 rs17104362 A G 829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.537;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=4.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=0.988;SOR=1.101 GT:AD:DP:GQ:PL 0/1:50,35:85:99:858,0,1095 5 145838440 rs11743333 G A 2270.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.69;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2299,243,0 5 145890028 rs4705103 A G 2610.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.33;ReadPosRankSum=-0.298;SOR=0.693 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2639,225,0 5 146077526 rs6879694 C T 1220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.397;SOR=0.747 GT:AD:DP:GQ:PL 0/1:40,49:89:99:1249,0,984 5 146619206 rs4705132 G C 662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.2;ReadPosRankSum=2.309;SOR=0.641 GT:AD:DP:GQ:PL 0/1:55,37:92:99:691,0,1220 5 146971253 rs7449194 C T 1254.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1283,129,0 5 147027930 rs7735403 A G 723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.692;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=3.323;SOR=0.736 GT:AD:DP:GQ:PL 0/1:29,32:61:99:752,0,568 5 147450028 rs3752677 C T 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.28;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.324;SOR=0.615 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1206,0,1604 5 147466001 rs17860502 G A 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.671;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.193;SOR=0.615 GT:AD:DP:GQ:PL 0/1:68,75:143:99:1827,0,1933 5 147480080 rs2303064 G A 1505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=4.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.481;SOR=0.898 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1534,0,1379 5 147492461 rs17718737 T C 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.296;SOR=0.576 GT:AD:DP:GQ:PL 0/1:72,71:143:99:1669,0,1716 5 147504315 rs2052537 A T 991.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=0.06;SOR=0.866 GT:AD:DP:GQ:PL 0/1:35,39:74:99:1020,0,833 5 147506593 rs17705005 A G 1684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.201;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.6;ReadPosRankSum=-0.453;SOR=0.932 GT:AD:DP:GQ:PL 0/1:41,67:108:99:1713,0,897 5 147593497 rs12186491 C A 739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=-0.459;SOR=0.68 GT:AD:DP:GQ:PL 0/1:46,37:83:99:768,0,1047 5 147788798 rs10077690 A G 820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.522;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=8.03;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-1.349;SOR=1.371 GT:AD:DP:GQ:PL 0/1:36,34:70:99:849,0,820 5 147803557 rs11168047 G T 1275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=0.686;SOR=0.772 GT:AD:DP:GQ:PL 0/1:71,56:127:99:1304,0,1933 5 147805120 rs10043775 T C 688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=0.436;SOR=0.903 GT:AD:DP:GQ:PL 0/1:47,32:79:99:717,0,1261 5 147819366 rs10051223 T C 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.59;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=6.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=0.009;SOR=1.257 GT:AD:DP:GQ:PL 0/1:47,59:106:99:1570,0,1078 5 148016537 rs17639735 A G 433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.61;ReadPosRankSum=-2.202;SOR=1.101 GT:AD:DP:GQ:PL 0/1:35,22:57:99:462,0,809 5 148206375 rs1801704 C T 4297.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.286 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4326,425,0 5 148206440 rs1042713 G A 2216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.185;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=2.104;SOR=0.853 GT:AD:DP:GQ:PL 0/1:123,98:221:99:2245,0,2945 5 148206473 rs1042714 G C 7468.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7497,717,0 5 148206646 rs1042717 G A 2382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.602;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=1.376;SOR=0.871 GT:AD:DP:GQ:PL 0/1:96,96:192:99:2411,0,2639 5 148206917 rs1042718 C A 2361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.575;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=7.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.309;SOR=0.709 GT:AD:DP:GQ:PL 0/1:117,96:213:99:2390,0,2860 5 148207447 rs1042719 G C 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=6.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.514;SOR=0.415 GT:AD:DP:GQ:PL 0/1:89,89:178:99:2286,0,2267 5 148207633 rs1042720 G A 373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=5.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.8;ReadPosRankSum=0.105;SOR=1.872 GT:AD:DP:GQ:PL 0/1:35,20:55:99:402,0,1003 5 148386525 rs6871030 T C,G 4363.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=27.1;SOR=0.705 GT:AD:DP:GQ:PL 1/2:0,70,91:161:99:4392,2491,2281,1901,0,1628 5 148407708 rs1432794 A C 6804.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6833,642,0 5 148408101 rs1432793 A G 2216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.948;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.585;SOR=0.626 GT:AD:DP:GQ:PL 0/1:103,81:184:99:2245,0,2788 5 148422274 rs17722293 C T 986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=0.702;SOR=0.639 GT:AD:DP:GQ:PL 0/1:70,44:114:99:1015,0,1795 5 148930501 . A G 1644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.084;ClippingRankSum=0;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-1.523;SOR=0.723 GT:AD:DP:GQ:PL 0/1:87,73:160:99:1673,0,2067 5 148989122 rs2400891 C T 5485.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5514,552,0 5 148989217 rs75799689 G A 3155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=3.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=1.118;SOR=0.7 GT:AD:DP:GQ:PL 0/1:96,133:229:99:3184,0,2062 5 149000039 rs7733761 C T 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=2.346;SOR=0.558 GT:AD:DP:GQ:PL 0/1:57,79:136:99:1719,0,1230 5 149001551 rs4629585 A C 2609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.425;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-0.332;SOR=0.659 GT:AD:DP:GQ:PL 0/1:90,100:190:99:2638,0,2203 5 149003627 rs55915030 C T 2719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.034;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-1.731;SOR=0.772 GT:AD:DP:GQ:PL 0/1:107,123:230:99:2748,0,2713 5 149006640 rs9324624 C T 1747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.336;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=10.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-2.175;SOR=1.413 GT:AD:DP:GQ:PL 0/1:84,69:153:99:1776,0,2025 5 149006726 rs7732714 A C 2371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.512;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-1.313;SOR=0.737 GT:AD:DP:GQ:PL 0/1:126,106:232:99:2400,0,2923 5 149006837 rs7732873 A G 6622.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.06;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,174:174:99:6651,523,0 5 149006842 rs7732874 A G 1939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-1.117;SOR=0.65 GT:AD:DP:GQ:PL 0/1:90,81:171:99:1968,0,2290 5 149008403 rs1056993 A G 7454.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7483,719,0 5 149008521 rs1135093 A G 7626.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7655,726,0 5 149151707 rs73796250 G A 2256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.133;SOR=0.627 GT:AD:DP:GQ:PL 0/1:98,96:194:99:2285,0,2392 5 149200043 rs32588 T C 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.824;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=0.635;SOR=0.846 GT:AD:DP:GQ:PL 0/1:91,74:165:99:1656,0,2054 5 149212800 rs32577 G A 3724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.131;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=0.219;SOR=0.672 GT:AD:DP:GQ:PL 0/1:162,146:308:99:3753,0,4059 5 149360877 rs30832 T C 4966.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4995,471,0 5 149374879 rs3832324 CT C 3173.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.667;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.918;QD=13.68;ReadPosRankSum=1.97;SOR=0.636 GT:AD:DP:GQ:PL 0/1:127,105:232:99:3211,0,4003 5 149374932 rs10875553 T C 2849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.578;SOR=0.784 GT:AD:DP:GQ:PL 0/1:128,113:241:99:2878,0,3289 5 149404179 rs35341726 G T 2037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.566;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.946;SOR=1.022 GT:AD:DP:GQ:PL 0/1:70,82:152:99:2066,0,1564 5 149406271 rs6579767 C T 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.704;SOR=0.489 GT:AD:DP:GQ:PL 0/1:60,64:124:99:1528,0,1546 5 149406413 rs147489392 G T 2053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.115;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.272;SOR=0.707 GT:AD:DP:GQ:PL 0/1:107,85:192:99:2082,0,2733 5 149495395 rs246388 T C 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=0.497;SOR=0.771 GT:AD:DP:GQ:PL 0/1:58,70:128:99:1763,0,1416 5 149497177 rs246391 T C 729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.39;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=-1.006;QD=8.59;ReadPosRankSum=1.92;SOR=0.725 GT:AD:DP:GQ:PL 0/1:56,29:85:99:758,0,1302 5 149499672 rs246395 T C 300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.082;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.99;ReadPosRankSum=-1.337;SOR=0.755 GT:AD:DP:GQ:PL 0/1:28,15:43:99:329,0,639 5 149576273 rs2270146 C T 3855.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3884,384,0 5 149583300 rs2240793 T C 2456.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.39;SOR=0.822 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,64:64:99:1|1:149583300_T_C:2485,192,0 5 149583336 rs2240794 T C 2285.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.13;SOR=0.981 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:149583300_T_C:2314,165,0 5 149585025 rs4705426 A C 3642.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3671,372,0 5 149602280 rs55976097 T C 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=0.625;SOR=0.91 GT:AD:DP:GQ:PL 0/1:83,62:145:99:1387,0,1819 5 149602608 rs2241694 A G 6816.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6845,713,0 5 149631413 rs2288799 A G 3570.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3599,327,0 5 149644597 rs891938 T G 1932.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1961,195,0 5 149677818 rs77943970 G A 3286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.623;SOR=0.632 GT:AD:DP:GQ:PL 0/1:144,133:277:99:3315,0,3897 5 149677851 rs6579784 A G 8783.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8812,819,0 5 149754204 rs367576572 C G 3850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.944;SOR=0.743 GT:AD:DP:GQ:PL 0/1:128,137:265:99:3879,0,3345 5 149772280 rs1136103 C G 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=-0.362;SOR=0.854 GT:AD:DP:GQ:PL 0/1:107,62:169:99:1358,0,2596 5 149907533 rs2273235 T G 8149.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,256:256:99:8178,768,0 5 149907602 rs2273234 A G 9154.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9183,891,0 5 149919739 rs1290147 G C 7400.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7429,711,0 5 150051958 rs194134 T C 6698.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=31.75;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6727,633,0 5 150407456 rs8177447 T C 1657.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.83;SOR=2.078 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1686,147,0 5 150410219 rs2233311 C A 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.266;SOR=0.671 GT:AD:DP:GQ:PL 0/1:68,65:133:99:1429,0,1747 5 150425467 rs2233299 G A 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.397;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-1.108;SOR=1.104 GT:AD:DP:GQ:PL 0/1:80,57:137:99:1395,0,2069 5 150484787 rs884520 C T 566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.252;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.25;ReadPosRankSum=0.347;SOR=0.682 GT:AD:DP:GQ:PL 0/1:74,34:108:99:595,0,1654 5 150489390 rs1133202 A G 4054.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4083,422,0 5 150512740 rs11543964 G A 796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.265;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=0.452;SOR=0.779 GT:AD:DP:GQ:PL 0/1:45,37:82:99:825,0,1032 5 150516887 rs2303034 G C 1620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.21;ReadPosRankSum=-0.745;SOR=0.535 GT:AD:DP:GQ:PL 0/1:35,65:100:99:1649,0,719 5 150518358 rs3213802 A G 3249.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.92;SOR=1.209 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,74:74:99:1|1:150518358_A_G:3278,223,0 5 150518359 rs3213803 G A 3249.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.77;SOR=1.276 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,71:71:99:1|1:150518358_A_G:3278,223,0 5 150518898 rs181564475 C T 2239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.093;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.049;QD=18.06;ReadPosRankSum=-0.058;SOR=0.764 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,60:124:99:0|1:150518892_GC_G:2268,0,3366 5 150518988 rs2228458 G A 1033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.775;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=3.826;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.126;QD=10.34;ReadPosRankSum=1.802;SOR=1.094 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1062,0,1244 5 150564973 rs2288818 A C 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.368;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.247;SOR=0.889 GT:AD:DP:GQ:PL 0/1:83,60:143:99:1453,0,2010 5 150639409 rs153477 A G 3126.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3155,312,0 5 150639439 rs153478 A G 3384.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3413,324,0 5 150646888 rs61740602 T C 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.586;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=-0.366;SOR=0.739 GT:AD:DP:GQ:PL 0/1:73,80:153:99:2135,0,1677 5 150647012 rs1048723 A G 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.782;SOR=0.665 GT:AD:DP:GQ:PL 0/1:79,86:165:99:2152,0,2075 5 150666933 rs375396 C A 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.216;SOR=0.524 GT:AD:DP:GQ:PL 0/1:114,105:219:99:2325,0,2770 5 150696447 rs369907 C T 3481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.468;SOR=0.53 GT:AD:DP:GQ:PL 0/1:166,148:314:99:3510,0,4008 5 150696540 rs431240 C T 3334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.222;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=5.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.938;SOR=0.604 GT:AD:DP:GQ:PL 0/1:164,141:305:99:3363,0,4069 5 150723806 rs192192 G A 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=1.767;SOR=0.865 GT:AD:DP:GQ:PL 0/1:90,57:147:99:1206,0,2080 5 150843165 rs72798317 C G 1138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.218;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.677;SOR=0.921 GT:AD:DP:GQ:PL 0/1:63,46:109:99:1167,0,1509 5 150844113 rs377427045 C T 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.027;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.04;QD=11.34;ReadPosRankSum=-0.317;SOR=0.622 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1162,0,1147 5 150847505 rs441652 T C 2169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.551;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.91;ReadPosRankSum=-1.048;SOR=1.033 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,57:109:99:0|1:150847505_T_C:2198,0,2055 5 150886725 rs7723266 G A 4029.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.273 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4058,406,0 5 150886882 rs1105168 G A 2284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.984;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=1.856;SOR=0.838 GT:AD:DP:GQ:PL 0/1:119,92:211:99:2313,0,3005 5 150887184 rs56258915 G GAGA 3590.73 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.9;QD=44.88;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,80:82:99:3628,253,0 5 150891733 rs2304028 A G 4046.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4075,390,0 5 150901111 rs3822699 A G 6538.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6567,618,0 5 150901261 rs6650971 C T 8267.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8296,828,0 5 150901300 rs3734046 G A 8580.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8609,881,0 5 150901597 rs3734047 G C 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.286;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.847;SOR=0.796 GT:AD:DP:GQ:PL 0/1:67,71:138:99:1863,0,1641 5 150901613 rs2053028 A G 3958.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3987,390,0 5 150901630 rs3734049 G T 1244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.678;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-0.222;SOR=0.925 GT:AD:DP:GQ:PL 0/1:68,55:123:99:1273,0,1612 5 150905398 rs3734051 C T 2120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.519;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.772;SOR=0.62 GT:AD:DP:GQ:PL 0/1:122,92:214:99:2149,0,3040 5 150908812 rs7718054 C T 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.11;ReadPosRankSum=-2.4;SOR=0.935 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,94:153:99:0|1:150908812_C_T:2340,0,2184 5 150908813 rs2304024 G A 1349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=2.561;SOR=0.525 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,58:152:99:1|0:150908812_C_T:1378,0,3794 5 150914184 rs1432643 A T 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=0.674;SOR=0.629 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1286,0,1181 5 150920108 rs2288777 A G 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=-1.707;SOR=0.886 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1095,0,1517 5 150923405 rs6892335 A G 5911.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5940,555,0 5 150924769 rs998076 G A 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-1.237;SOR=0.505 GT:AD:DP:GQ:PL 0/1:64,74:138:99:1832,0,1651 5 150925144 rs3797875 A G 5054.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5083,480,0 5 150928934 rs10044879 C T 2618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.653;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-1.14;SOR=0.613 GT:AD:DP:GQ:PL 0/1:94,106:200:99:2647,0,2139 5 150932802 rs2304023 C T 2602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.646;SOR=0.686 GT:AD:DP:GQ:PL 0/1:107,111:218:99:2631,0,2788 5 150935978 rs10076684 A T 676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.444;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.838;SOR=0.458 GT:AD:DP:GQ:PL 0/1:27,28:55:99:705,0,688 5 150942919 rs6872614 A G 3746.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3775,354,0 5 150942969 rs2304053 G A 1201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.166;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-1.602;SOR=0.751 GT:AD:DP:GQ:PL 0/1:90,54:144:99:1230,0,2249 5 150943085 rs2304054 G A 4358.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4387,444,0 5 150945483 rs3734055 C T 6198.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6227,608,0 5 150945699 rs10085060 G A 6080.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6109,590,0 5 150945862 rs3734057 A G 6780.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.08;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6809,615,0 5 150945931 rs3734058 C T 5001.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,153:153:99:5030,459,0 5 150946132 rs3734059 G A 5784.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5813,555,0 5 150946436 rs9324700 A G 4292.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.19;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4321,366,0 5 150946773 rs1432862 G A 3715.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3744,377,0 5 150946966 rs1465690 G A 3983.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4012,374,0 5 150947719 rs3734060 C T 5925.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5954,600,0 5 151771817 rs1363422 C T 5032.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.35;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5061,549,0 5 151784183 rs3749787 G A 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=11.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.12;SOR=1.179 GT:AD:DP:GQ:PL 0/1:127,105:232:99:2333,0,3511 5 153372525 rs1057772 G A 1062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.423;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-0.81;SOR=0.946 GT:AD:DP:GQ:PL 0/1:53,46:99:99:1091,0,1175 5 153382518 rs34136150 G A 1064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.225;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.917;SOR=0.666 GT:AD:DP:GQ:PL 0/1:48,45:93:99:1093,0,1091 5 153413390 rs2578377 C T 637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=1.882;SOR=0.696 GT:AD:DP:GQ:PL 0/1:47,30:77:99:666,0,1224 5 153429459 rs690592 T C 2103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.927;SOR=0.68 GT:AD:DP:GQ:PL 0/1:93,90:183:99:2132,0,2327 5 153432733 rs2578386 T C 2205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.48;SOR=0.665 GT:AD:DP:GQ:PL 0/1:76,85:161:99:2234,0,1843 5 153432970 rs2255493 C T 1877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.231;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.964;SOR=0.5 GT:AD:DP:GQ:PL 0/1:100,78:178:99:1906,0,2371 5 153783753 rs6580076 C T 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.748;SOR=0.909 GT:AD:DP:GQ:PL 0/1:54,58:112:99:1314,0,1225 5 154214232 rs62382170 C T 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=3.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.555;SOR=0.408 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1133,0,1238 5 154268902 rs816739 C T 1307.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1336,138,0 5 154271948 rs816736 G A 2699.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=1.356 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2728,260,0 5 154278888 rs816740 C T 2225.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2254,219,0 5 154291409 rs1974777 C T 3873.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3902,401,0 5 154300940 rs348739 A C 1544.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1573,165,0 5 154306972 rs2258437 T C 2530.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2559,246,0 5 154395158 rs6580126 G T 7764.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7793,768,0 5 154395458 rs17116710 G A 3642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=0.646;SOR=0.672 GT:AD:DP:GQ:PL 0/1:119,147:266:99:3671,0,2849 5 154395682 rs56080630 G A 2556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=1.086;SOR=0.866 GT:AD:DP:GQ:PL 0/1:137,112:249:99:2585,0,3315 5 154396505 rs60928118 G A 3089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=4.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.949;SOR=0.642 GT:AD:DP:GQ:PL 0/1:156,131:287:99:3118,0,3854 5 156376703 rs6873053 A G 2878.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2907,296,0 5 156479424 rs1553317 A C 6662.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=37.02;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,180:180:99:6691,543,0 5 156479443 rs45439103 CTTG C 3537.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.392;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.448;QD=18.72;ReadPosRankSum=-0.673;SOR=0.86 GT:AD:DP:GQ:PL 0/1:96,93:189:99:3575,0,3751 5 156479509 rs1553316 A G 6146.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6175,632,0 5 156479557 rs6149307 GTTGGAACAGTCGTCA G 3220.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20;ReadPosRankSum=-0.622;SOR=0.684 GT:AD:DP:GQ:PL 0/1:73,88:161:99:3258,0,2695 5 156479568 rs139041445 C CGTT 2635.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.128;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.47;ReadPosRankSum=0.073;SOR=0.681 GT:AD:DP:GQ:PL 0/1:88,72:160:99:2673,0,3288 5 156482459 rs1809941 G T 3061.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3090,312,0 5 156525920 rs371359315 AAG A 211.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.248;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.36;ReadPosRankSum=-0.04;SOR=0.538 GT:AD:DP:GQ:PL 0/1:51,12:65:99:249,0,1549 5 156531736 rs1036199 C A 3059.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3088,306,0 5 156714137 rs2288068 G A 894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.05;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-1.803;SOR=0.793 GT:AD:DP:GQ:PL 0/1:40,40:80:99:923,0,928 5 156721863 rs5872508 T TC 4999.73 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.33;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5037,451,0 5 156753257 rs11551374 C T 969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.97;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=3.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.238;SOR=0.397 GT:AD:DP:GQ:PL 0/1:48,41:89:99:998,0,1132 5 156766273 rs3734028 G A 821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.596;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=0.986;SOR=0.846 GT:AD:DP:GQ:PL 0/1:64,38:102:99:850,0,1473 5 156770209 rs10214194 G A 2898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.318;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.062;SOR=0.518 GT:AD:DP:GQ:PL 0/1:120,108:228:99:2927,0,3205 5 156786168 rs2289851 C A 804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.914;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=14.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.82;ReadPosRankSum=-0.713;SOR=2.015 GT:AD:DP:GQ:PL 0/1:82,36:118:99:833,0,2148 5 156816325 rs114967929 G A 2693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=1.269;SOR=0.811 GT:AD:DP:GQ:PL 0/1:148,121:269:99:2722,0,3708 5 156887133 rs1105282 A G 1331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.664;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.67;ReadPosRankSum=0.433;SOR=0.763 GT:AD:DP:GQ:PL 0/1:36,49:85:99:1360,0,846 5 156898690 rs6860507 A G 1633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.85;ReadPosRankSum=-1.617;SOR=1.008 GT:AD:DP:GQ:PL 0/1:43,67:110:99:1662,0,984 5 156899869 rs4704870 T C 4045.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.86;SOR=2.321 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4074,376,0 5 156908653 rs11134767 C T 2174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.665;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.292;SOR=0.589 GT:AD:DP:GQ:PL 0/1:93,94:187:99:2203,0,2521 5 156917340 rs10067096 A C 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.547;SOR=0.759 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1722,0,1926 5 156929816 rs56384823 C T 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.433;SOR=0.979 GT:AD:DP:GQ:PL 0/1:76,64:140:99:1420,0,1859 5 156936364 rs1422795 T C 1353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.401;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.94;ReadPosRankSum=0.519;SOR=0.84 GT:AD:DP:GQ:PL 0/1:131,64:195:99:1382,0,3341 5 157078475 rs3749797 C G 3081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-3.333;SOR=0.566 GT:AD:DP:GQ:PL 0/1:130,129:259:99:3110,0,3103 5 157098756 rs11740603 G T 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.571;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-0.593;SOR=0.702 GT:AD:DP:GQ:PL 0/1:88,80:168:99:1772,0,2001 5 157102185 rs6884959 A G 825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=0.769;SOR=0.404 GT:AD:DP:GQ:PL 0/1:56,40:96:99:854,0,1300 5 157106968 rs6892478 C T 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.488;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.538;SOR=0.829 GT:AD:DP:GQ:PL 0/1:74,83:157:99:1910,0,2021 5 157164889 rs2270813 T C 2679.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.204 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2708,267,0 5 157164962 rs2270812 T C 3178.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3207,330,0 5 158204425 rs1368298 A G 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.003;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=1.097;SOR=0.789 GT:AD:DP:GQ:PL 0/1:89,87:176:99:2220,0,2060 5 158588633 rs59997682 GAAAAA G 1614.73 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.49;QD=42.49;SOR=1.863 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1652,115,0 5 159659273 rs1130435 C T 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=1.353;SOR=0.461 GT:AD:DP:GQ:PL 0/1:89,66:155:99:1476,0,2326 5 159665599 rs2277954 G A 2572.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2601,267,0 5 159776637 rs10053189 C T 3623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.329;SOR=0.628 GT:AD:DP:GQ:PL 0/1:148,155:303:99:3652,0,3506 5 159831803 rs2961940 A G 258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.39;ReadPosRankSum=-0.45;SOR=0.804 GT:AD:DP:GQ:PL 0/1:32,16:48:99:287,0,765 5 159835658 rs2961944 A G 1542.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1571,162,0 5 159839545 rs2961948 G A 520.77 PASS AC=2;AF=1;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.72;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,15:15:45:549,45,0 5 159841492 . TA T 38.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.97;ReadPosRankSum=1.466;SOR=0.527 GT:AD:DP:GQ:PL 0/1:32,8:48:76:76,0,738 5 160044855 rs1363199 G A 2804.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2833,282,0 5 160097453 rs1990888 A C 3203.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3232,318,0 5 160097496 rs958912 A G 4353.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4382,443,0 5 160097632 rs958911 G A 3877.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3906,407,0 5 160721319 rs2229944 G A 2342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.172;SOR=0.692 GT:AD:DP:GQ:PL 0/1:105,109:214:99:2371,0,2413 5 161113004 rs13188991 G A 457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.377;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.87;ReadPosRankSum=-0.007;SOR=0.469 GT:AD:DP:GQ:PL 0/1:53,25:78:99:486,0,1271 5 161119071 rs12522663 G T 4613.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4642,465,0 5 161119125 rs13184586 C G 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.584;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.787;SOR=0.73 GT:AD:DP:GQ:PL 0/1:98,77:175:99:1770,0,2328 5 161128761 rs4277944 C G 3279.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3308,314,0 5 161322889 rs2279020 G A 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.386;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-1.894;SOR=1.098 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1340,0,1246 5 161528280 rs211037 C T 821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-0.685;SOR=0.95 GT:AD:DP:GQ:PL 0/1:49,36:85:99:850,0,1316 5 161529571 rs211035 A G 3410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.554;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.835;SOR=0.784 GT:AD:DP:GQ:PL 0/1:160,141:301:99:3439,0,3627 5 162890953 rs380101 G A 957.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=1.148 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,35:35:99:1|1:162890946_T_C:986,105,0 5 162911075 rs2230363 C A 546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.58;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-0.467;SOR=0.301 GT:AD:DP:GQ:PL 0/1:22,23:45:99:575,0,660 5 162940999 rs11546512 A G 658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.941;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-2.05;SOR=0.368 GT:AD:DP:GQ:PL 0/1:33,25:58:99:687,0,899 5 167182055 rs1862875 G A 6166.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.81;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6195,687,0 5 167489049 rs36064507 C CT 812.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=-1.393;SOR=0.416 GT:AD:DP:GQ:PL 0/1:60,43:120:99:850,0,1170 5 167674370 rs3733988 C T 2609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-1.205;SOR=0.671 GT:AD:DP:GQ:PL 0/1:88,98:186:99:2638,0,2434 5 167675392 rs12189266 C T 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=-1.133;SOR=0.954 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1549,0,1310 5 167850748 rs12054944 A G 11284.8 PASS AC=2;AF=1;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,366:366:99:11313,1101,0 5 167858371 rs3822660 G T 4123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.83;ReadPosRankSum=0.088;SOR=0.686 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,106:208:99:0|1:167858371_G_T:4152,0,3931 5 167858372 rs3822659 T G 4123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.73;ReadPosRankSum=-0.303;SOR=0.627 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,108:209:99:0|1:167858371_G_T:4152,0,3931 5 167858434 rs3822658 T C 2845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.602;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.689;SOR=0.713 GT:AD:DP:GQ:PL 0/1:106,111:217:99:2874,0,2484 5 167858462 rs67911792 TCTGGCTGG T,TCTGG 5445.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.11;QD=40.95;SOR=0.849 GT:AD:DP:GQ:PL 1/2:0,65,68:136:99:5483,2814,2757,2675,0,2479 5 167868779 rs3733981 A G 3131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.792;SOR=0.822 GT:AD:DP:GQ:PL 0/1:151,136:287:99:3160,0,3648 5 167868809 rs3733980 C T 3343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-1.029;SOR=0.668 GT:AD:DP:GQ:PL 0/1:156,146:302:99:3372,0,3952 5 167891830 rs3203960 T C 3944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.023;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-0.242;SOR=0.77 GT:AD:DP:GQ:PL 0/1:152,160:312:99:3973,0,3677 5 167913510 rs244903 G A 3513.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.412 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3542,341,0 5 167919726 rs2305727 A G 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.003;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=1.405;SOR=0.786 GT:AD:DP:GQ:PL 0/1:74,60:134:99:1500,0,1654 5 167919825 rs2305728 G A 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.813;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.742;SOR=0.532 GT:AD:DP:GQ:PL 0/1:77,56:133:99:1434,0,1864 5 167924260 rs11557637 C A 1004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-1.054;SOR=0.723 GT:AD:DP:GQ:PL 0/1:39,42:81:99:1033,0,1035 5 167933060 rs2305733 A G 1433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.318;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=2.576;SOR=0.529 GT:AD:DP:GQ:PL 0/1:45,56:101:99:1462,0,1019 5 167933156 rs61744940 A G 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.552;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.69;ReadPosRankSum=-1.234;SOR=0.835 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,46:103:99:0|1:167933156_A_G:1747,0,2457 5 167933158 rs2305734 T A 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.69;ReadPosRankSum=-1.023;SOR=0.929 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,45:103:99:0|1:167933156_A_G:1747,0,2457 5 167933215 rs2305735 A G 734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.732;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-1.432;SOR=0.674 GT:AD:DP:GQ:PL 0/1:41,28:69:99:763,0,1001 5 167943827 rs653568 G A 3915.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3944,384,0 5 167946076 rs2305736 A G 825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.803;SOR=0.381 GT:AD:DP:GQ:PL 0/1:26,37:63:99:854,0,621 5 168098235 rs2277933 A G 2475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.206;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=4.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=2.036;SOR=0.474 GT:AD:DP:GQ:PL 0/1:123,111:234:99:2504,0,2855 5 168098463 rs292486 A G 5957.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5986,592,0 5 168212951 rs891921 A G 2802.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2831,285,0 5 168250350 rs924875 C G 583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.713;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=1.078;SOR=1.051 GT:AD:DP:GQ:PL 0/1:36,24:60:99:612,0,882 5 169020337 rs368915167 CT C 89.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.55;ReadPosRankSum=-0.728;SOR=0.402 GT:AD:DP:GQ:PL 0/1:45,13:58:99:127,0,1024 5 169021610 rs4493692 C T 784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.38;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-0.6;SOR=0.727 GT:AD:DP:GQ:PL 0/1:51,35:86:99:813,0,1414 5 169028481 rs3797713 T C 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.968;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-1.678;SOR=0.814 GT:AD:DP:GQ:PL 0/1:108,106:214:99:2621,0,2439 5 169031150 rs3777084 T C 1201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.055;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=0.793;SOR=0.745 GT:AD:DP:GQ:PL 0/1:71,52:123:99:1230,0,1719 5 169031218 rs2042248 G T 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.03;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=0.881;SOR=0.641 GT:AD:DP:GQ:PL 0/1:63,44:107:99:1011,0,1747 5 169129422 rs2306559 A G 7635.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7664,726,0 5 169435713 rs2287727 A C 2038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.566;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-0.575;SOR=0.629 GT:AD:DP:GQ:PL 0/1:94,82:176:99:2067,0,2284 5 169454941 rs9791113 C G 2375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.267;SOR=0.695 GT:AD:DP:GQ:PL 0/1:109,105:214:99:2404,0,2462 5 169461399 rs3763047 G A 2212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.525;SOR=0.559 GT:AD:DP:GQ:PL 0/1:112,100:212:99:2241,0,2685 5 169461547 rs3763048 C T 2901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=4.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-1.328;SOR=0.479 GT:AD:DP:GQ:PL 0/1:138,127:265:99:2930,0,3354 5 169504743 rs1045168 T C 6552.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6581,651,0 5 169533240 rs2277944 G A 3041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-1.206;SOR=0.617 GT:AD:DP:GQ:PL 0/1:145,123:268:99:3070,0,3711 5 169535522 rs10063424 T C 6319.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6348,650,0 5 169661994 rs957998 G C 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.155;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=-0.138;SOR=0.473 GT:AD:DP:GQ:PL 0/1:17,26:43:99:682,0,363 5 169675693 rs80044664 AT A 1697.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.412;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.027;QD=15.29;ReadPosRankSum=1.239;SOR=0.97 GT:AD:DP:GQ:PL 0/1:56,55:111:99:1735,0,1882 5 169685163 rs315717 C T 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.705;SOR=0.708 GT:AD:DP:GQ:PL 0/1:51,67:118:99:1616,0,1219 5 169695446 rs2292254 C T 382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.918;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=5.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=1.481;SOR=1.885 GT:AD:DP:GQ:PL 0/1:17,15:32:99:411,0,430 5 169697707 rs315745 G A 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.397;SOR=0.565 GT:AD:DP:GQ:PL 0/1:57,50:107:99:1169,0,1396 5 169715038 rs315721 A G 1098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.09;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=3.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-2.129;SOR=1.105 GT:AD:DP:GQ:PL 0/1:52,44:96:99:1127,0,1123 5 169812303 rs2071156 G A 5057.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5086,535,0 5 170149737 rs147147696 G A 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.07;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.11;ReadPosRankSum=-0.455;SOR=0.461 GT:AD:DP:GQ:PL 0/1:30,49:79:99:1222,0,665 5 170159801 rs62392784 C T 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=-0.371;SOR=0.512 GT:AD:DP:GQ:PL 0/1:18,30:48:99:761,0,421 5 170239112 rs1063310 C A 2172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.83;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.112;SOR=0.702 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2201,0,2459 5 170626735 rs35724654 A G 897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.292;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-1.152;SOR=0.804 GT:AD:DP:GQ:PL 0/1:33,36:69:99:926,0,766 5 171480055 rs4569891 G A 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.873;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.362;SOR=0.56 GT:AD:DP:GQ:PL 0/1:39,41:80:99:1000,0,1131 5 171523436 rs4868141 G A 3868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.778;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-1.572;SOR=0.621 GT:AD:DP:GQ:PL 0/1:191,170:361:99:3897,0,4482 5 171533629 rs2306963 A G 2614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.732;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=4.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.822;SOR=0.989 GT:AD:DP:GQ:PL 0/1:147,94:241:99:2643,0,3648 5 171533656 rs2306962 C T 3016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.818;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=5.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.797;SOR=1.006 GT:AD:DP:GQ:PL 0/1:166,124:290:99:3045,0,4017 5 171533782 rs2306961 T C 3207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.543;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=7.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=0.642;SOR=1.113 GT:AD:DP:GQ:PL 0/1:150,121:271:99:3236,0,3765 5 171630204 rs372914830 CACCCT C 3825.73 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=52.41;SOR=1.673 GT:AD:DP:GQ:PL 1/1:0,73:75:99:3863,268,0 5 172096768 rs10476046 C A 2236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.555;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=-1.963;SOR=0.794 GT:AD:DP:GQ:PL 0/1:67,92:159:99:2265,0,1718 5 172097353 rs6556037 C T 1890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.787;SOR=0.716 GT:AD:DP:GQ:PL 0/1:95,78:173:99:1919,0,2537 5 172196711 rs2431663 G T 6331.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6360,650,0 5 172421760 rs11296906 AT A 147.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.02;ReadPosRankSum=-0.098;SOR=0.434 GT:AD:DP:GQ:PL 0/1:57,16:83:99:185,0,1208 5 172578549 rs374928255 AT A 249.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.178;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=4.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.62;ReadPosRankSum=-1.837;SOR=1.196 GT:AD:DP:GQ:PL 0/1:48,21:90:99:287,0,984 5 172745269 . AAG A 139.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.687;ClippingRankSum=0;DP=180;ExcessHet=3.0103;FS=9.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.11;ReadPosRankSum=2.068;SOR=0.897 GT:AD:DP:GQ:PL 0/1:103,23:139:99:177,0,2903 5 173316729 rs359467 G A 1032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.219;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.671;SOR=0.416 GT:AD:DP:GQ:PL 0/1:52,44:96:99:1061,0,1552 5 173376506 rs12652907 A G 964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.927;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=0.241;SOR=0.735 GT:AD:DP:GQ:PL 0/1:33,39:72:99:993,0,751 5 174156168 rs4242182 T C 4007.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4036,372,0 5 174868840 rs155417 T C 5890.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5919,581,0 5 174937193 rs2662170 C T 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.169;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.03;SOR=0.562 GT:AD:DP:GQ:PL 0/1:82,78:160:99:1714,0,1807 5 174939214 rs925197 C T 665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=0.141;SOR=0.981 GT:AD:DP:GQ:PL 0/1:49,34:83:99:694,0,1259 5 174953743 rs198039 G A 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.568;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.44;SOR=0.655 GT:AD:DP:GQ:PL 0/1:55,58:113:99:1303,0,1114 5 175387139 rs79720333 C T 842.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.22;QD=28.09;SOR=2.985 GT:AD:DP:GQ:PL 1/1:0,30:30:90:871,90,0 5 175394181 rs200408233 G A 522.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.17;QD=29.04;SOR=5.892 GT:AD:DP:GQ:PL 1/1:0,18:18:54:551,54,0 5 175535591 rs201379396 G A 1484.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.115;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.5;MQ=38.31;MQRankSum=-1.943;QD=8.68;ReadPosRankSum=-0.3;SOR=0.951 GT:AD:DP:GQ:PL 0/1:97,74:171:99:1513,0,2455 5 175792605 rs2303667 G C 5473.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5502,534,0 5 175811094 rs56989856 C CAT,CGT 7544.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=38.49;SOR=0.941 GT:AD:DP:GQ:PL 1/2:0,82,114:196:99:7582,3267,2992,2330,0,1790 5 175956271 rs890835 A C 2613.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2642,246,0 5 175956516 rs2241585 G A 7967.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7996,745,0 5 175995835 rs36070803 G A 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.178;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-1.261;SOR=0.691 GT:AD:DP:GQ:PL 0/1:83,93:176:99:2333,0,2028 5 175998208 rs6867593 T G 811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-0.819;SOR=1.098 GT:AD:DP:GQ:PL 0/1:51,39:90:99:840,0,1237 5 175998246 rs17078320 T C 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.92;ReadPosRankSum=2.743;SOR=0.732 GT:AD:DP:GQ:PL 0/1:72,50:122:99:994,0,1722 5 176001189 rs1078628 G A 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.267;SOR=0.503 GT:AD:DP:GQ:PL 0/1:37,42:79:99:1026,0,937 5 176002144 rs4242200 A C 6098.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.69;SOR=1.532 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6127,544,0 5 176004476 rs11134982 T C 8390.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8419,842,0 5 176005477 rs2358747 C T 1437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-0.415;SOR=0.581 GT:AD:DP:GQ:PL 0/1:54,61:115:99:1466,0,1312 5 176011264 rs752139 T C 1150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=1.102;SOR=0.976 GT:AD:DP:GQ:PL 0/1:54,46:100:99:1179,0,1448 5 176011889 rs4868660 G A 2250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.623;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.038;SOR=0.872 GT:AD:DP:GQ:PL 0/1:120,89:209:99:2279,0,3017 5 176017549 rs4868662 C T 1527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.567;SOR=0.703 GT:AD:DP:GQ:PL 0/1:84,64:148:99:1556,0,2357 5 176017639 rs17078347 C A 1728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=10.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=0.706;SOR=0.665 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1757,0,1966 5 176024880 rs4868663 C T 5864.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.913 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5893,567,0 5 176025938 rs6556276 T C 4453.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4482,437,0 5 176056529 rs4868669 A G 6167.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6196,595,0 5 176305466 rs2304516 T A 8057.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8086,819,0 5 176314434 rs2278493 C T 2366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.977;SOR=0.788 GT:AD:DP:GQ:PL 0/1:91,91:182:99:2395,0,2397 5 176314459 rs2278492 G A 2412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.566;SOR=0.77 GT:AD:DP:GQ:PL 0/1:93,96:189:99:2441,0,2417 5 176314639 rs6875296 G A 3019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.822;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.394;SOR=0.567 GT:AD:DP:GQ:PL 0/1:120,124:244:99:3048,0,2831 5 176316455 rs35610191 C T 2750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.53;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.186;SOR=0.757 GT:AD:DP:GQ:PL 0/1:144,123:267:99:2779,0,3211 5 176334195 rs2292255 C T 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.77;ReadPosRankSum=0.762;SOR=0.66 GT:AD:DP:GQ:PL 0/1:67,42:109:99:984,0,1737 5 176378574 rs365132 G T 607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.659;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.33;ReadPosRankSum=1.099;SOR=1.013 GT:AD:DP:GQ:PL 0/1:65,31:96:99:636,0,1538 5 176382995 rs3733876 G A 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.668;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.692;SOR=0.819 GT:AD:DP:GQ:PL 0/1:65,69:134:99:1527,0,1656 5 176402401 rs1700490 G A 1363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.997;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.66;ReadPosRankSum=0.306;SOR=0.889 GT:AD:DP:GQ:PL 0/1:106,72:178:99:1392,0,2211 5 176517461 rs446382 T G 7658.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7687,731,0 5 176517797 rs376618 C T 4202.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4231,405,0 5 176518784 rs452885 C T 6099.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6128,622,0 5 176522728 rs42409 C T 4421.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.088 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4450,440,0 5 176523597 rs31776 A G 4329.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=1.376 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4358,402,0 5 176721198 rs28580074 T C 5870.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=31.56;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5899,558,0 5 176721272 rs11740250 G C 6348.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=34.5;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6377,553,0 5 176729736 . ACC A,AC 1593.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.441;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.5;MQRankSum=0.354;QD=23.44;ReadPosRankSum=0.259;SOR=1.528 GT:AD:DP:GQ:PL 1/2:6,18,44:71:99:1631,952,1157,364,0,315 5 176733116 rs4631 A G 2579.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.5;SOR=1.15 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2608,231,0 5 176734855 rs4568379 G C 1979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=1.167;SOR=0.711 GT:AD:DP:GQ:PL 0/1:93,82:175:99:2008,0,2454 5 176798040 rs56235845 T G 3506.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.59;QD=40.78;SOR=1.065 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3535,259,0 5 176813232 rs199844043 GGTCCCCAAGCTGCGCCAGGCT G 4152.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.692;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=3.127;QD=18.46;ReadPosRankSum=-0.235;SOR=0.616 GT:AD:DP:GQ:PL 0/1:115,110:225:99:4190,0,4574 5 176813404 rs3812036 C T 2479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.33;SOR=0.608 GT:AD:DP:GQ:PL 0/1:123,107:230:99:2508,0,3120 5 176815124 rs5030873 T C 2526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.385;SOR=0.69 GT:AD:DP:GQ:PL 0/1:99,105:204:99:2555,0,2448 5 176825069 rs34225933 C T 2522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.621;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.199;SOR=0.679 GT:AD:DP:GQ:PL 0/1:98,113:211:99:2551,0,2750 5 176830627 rs17876032 G A 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.553;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.939;SOR=0.68 GT:AD:DP:GQ:PL 0/1:96,81:177:99:2183,0,2566 5 176831177 rs35966430 TC T 2529.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.979;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=4.673;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.366;QD=11.99;ReadPosRankSum=-0.835;SOR=0.883 GT:AD:DP:GQ:PL 0/1:103,108:215:99:2567,0,2388 5 176831826 rs17876030 C G 4015.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4044,413,0 5 176836532 rs1801020 A G 4405.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=1.155 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4434,432,0 5 176863519 rs1130857 G C 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.116;SOR=0.502 GT:AD:DP:GQ:PL 0/1:62,57:119:99:1440,0,1708 5 176867943 rs335435 A G 2153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-1.172;SOR=0.634 GT:AD:DP:GQ:PL 0/1:110,89:199:99:2182,0,2760 5 176884641 rs79853090 C T 960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.56;ReadPosRankSum=-0.889;SOR=0.694 GT:AD:DP:GQ:PL 0/1:23,35:58:99:989,0,655 5 176885178 rs28538572 A G 7333.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.03;ReadPosRankSum=-0.466;SOR=0.269 GT:AD:DP:GQ:PL 1/1:1,228:229:99:7362,646,0 5 176885499 rs2544809 T C 2658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.94;ReadPosRankSum=0.734;SOR=0.627 GT:AD:DP:GQ:PL 0/1:70,108:178:99:2687,0,1759 5 176894756 rs2545794 C T 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.176;SOR=0.659 GT:AD:DP:GQ:PL 0/1:68,64:132:99:1537,0,1717 5 176930135 rs28376231 G A 9058.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,309:309:99:9087,925,0 5 176936650 rs28565502 T C 9294.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.43;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,278:278:99:9323,834,0 5 176951276 rs337382 A G 8888.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8917,881,0 5 176951914 rs116293002 G A 2918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.083;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=1.772;SOR=0.822 GT:AD:DP:GQ:PL 0/1:88,113:201:99:2947,0,2292 5 176963349 rs335460 G A 5270.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=1.624 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5299,500,0 5 176981469 rs185798693 C T 846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.54;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.255;SOR=0.521 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,37:76:99:0|1:176981469_C_T:875,0,992 5 177019688 rs4607363 G C 1593.89 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.813;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.92;ReadPosRankSum=0.152;SOR=0.934 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,72:80:2:1|0:177019687_CG_C:1620,0,2 5 177031348 rs11537644 T C 8853.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8882,832,0 5 177035964 rs729459 T C 4595.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4624,456,0 5 177158620 rs74542560 T C 4177.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.47;QD=29.84;SOR=1.478 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4206,420,0 5 177161891 rs140979906 A G 1364.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.97;QD=35.91;SOR=2.073 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1393,114,0 5 177171893 rs150845875 A G 118.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.13;MQRankSum=-4.008;QD=0.63;ReadPosRankSum=1.541;SOR=0.755 GT:AD:DP:GQ:PL 0/1:162,28:190:99:147,0,3829 5 177422823 rs4072924 C T 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=0.039;SOR=0.719 GT:AD:DP:GQ:PL 0/1:105,91:196:99:1869,0,2358 5 177422876 rs7445271 T C 6404.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6433,660,0 5 177422908 rs1135320 A G 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.297;SOR=0.647 GT:AD:DP:GQ:PL 0/1:88,81:169:99:1926,0,2098 5 177547247 rs7719667 T C 8603.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8632,846,0 5 177574901 rs7380934 C G 2425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.65;ReadPosRankSum=2.137;SOR=0.906 GT:AD:DP:GQ:PL 0/1:67,88:155:99:2454,0,1789 5 177669413 rs2241579 T G 1042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.198;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=5.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=0.609;SOR=1.225 GT:AD:DP:GQ:PL 0/1:74,49:123:99:1071,0,1706 5 177675217 rs2913851 C T 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-1.404;SOR=0.721 GT:AD:DP:GQ:PL 0/1:82,71:153:99:1558,0,1918 5 177683377 rs890802 T C 5226.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5255,554,0 5 178030941 . G GA 62.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=4.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.28;ReadPosRankSum=0.911;SOR=0.238 GT:AD:DP:GQ:PL 0/1:39,10:55:99:100,0,808 5 178139442 rs1132338 T G 3349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.5;MQ=57.61;MQRankSum=-6.995;QD=11.71;ReadPosRankSum=-1.094;SOR=0.592 GT:AD:DP:GQ:PL 0/1:148,138:286:99:3378,0,3699 5 178140090 rs1132336 C T 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.785;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=5.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-1.049;SOR=0.885 GT:AD:DP:GQ:PL 0/1:103,84:187:99:2110,0,2468 5 178294059 rs11952817 T C 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=2.944;SOR=0.658 GT:AD:DP:GQ:PL 0/1:74,77:151:99:1868,0,1680 5 178310446 rs4130052 C T 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.32;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.363;SOR=0.699 GT:AD:DP:GQ:PL 0/1:106,76:182:99:1923,0,2983 5 178391902 rs12719860 A C 5383.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5412,536,0 5 178413947 rs11746675 T C 4578.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4607,462,0 5 178415937 rs2067011 A G 3580.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3609,369,0 5 178415982 rs4701014 A G 5367.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5396,555,0 5 178416063 rs2645339 G A 4743.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=30.22;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4772,470,0 5 178416288 rs2071246 G A 2969.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=34.53;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2998,256,0 5 178416348 rs17839804 G A 1356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.743;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=4.127;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-1.431;QD=10.44;ReadPosRankSum=-2.516;SOR=0.553 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1385,0,1705 5 178421770 rs2645329 T G 6185.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.49;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6214,675,0 5 178459283 rs17078988 A G 1637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.067;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.632;SOR=0.701 GT:AD:DP:GQ:PL 0/1:78,74:152:99:1666,0,1772 5 178459426 rs17078991 A C 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.81;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-2.106;SOR=0.877 GT:AD:DP:GQ:PL 0/1:96,100:196:99:2415,0,2230 5 178507069 rs1445846 T C 1512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.714;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-1.009;SOR=0.881 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1541,0,1711 5 178507090 rs1445845 G A 1017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.204;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-0.807;SOR=0.791 GT:AD:DP:GQ:PL 0/1:63,44:107:99:1046,0,1601 5 178555045 rs2303644 G A 2347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.022;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.588;SOR=0.694 GT:AD:DP:GQ:PL 0/1:111,105:216:99:2376,0,2557 5 178567054 rs2303638 A G 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=4.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.803;SOR=1.112 GT:AD:DP:GQ:PL 0/1:70,70:140:99:1773,0,1643 5 178581797 rs2278222 C T 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=1.099;SOR=0.709 GT:AD:DP:GQ:PL 0/1:42,35:77:99:774,0,1019 5 178581859 rs2278221 G A 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=4.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.052;SOR=0.869 GT:AD:DP:GQ:PL 0/1:80,79:159:99:1674,0,1811 5 178634547 rs66565583 G A 1252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=7.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=1.605;SOR=1.393 GT:AD:DP:GQ:PL 0/1:41,45:86:99:1281,0,1115 5 178634619 rs423552 C T 5598.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5627,588,0 5 178634672 rs398829 C T 2212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.092;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=1.211;SOR=0.891 GT:AD:DP:GQ:PL 0/1:117,101:218:99:2241,0,2566 5 178772259 . GGCA G 317.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=2.9;QD=1.55;ReadPosRankSum=2.44;SOR=0.691 GT:AD:DP:GQ:PL 0/1:183,22:205:99:355,0,7195 5 178996435 rs11743261 A G 2789.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.32;ReadPosRankSum=1.096;SOR=0.487 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2818,239,0 5 179016664 rs6895677 A T 700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=2.005;SOR=0.59 GT:AD:DP:GQ:PL 0/1:40,33:73:99:729,0,937 5 179020622 rs4701135 T C 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=2.374;SOR=0.728 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1562,0,1687 5 179021982 rs28685239 G A 600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.512;SOR=0.646 GT:AD:DP:GQ:PL 0/1:31,28:59:99:629,0,796 5 179025789 rs72824522 G A 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.526;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.899;SOR=0.577 GT:AD:DP:GQ:PL 0/1:67,56:123:99:1409,0,1668 5 179036357 rs7448707 G A 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.211;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=5.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.567;SOR=1.256 GT:AD:DP:GQ:PL 0/1:73,50:123:99:1227,0,1863 5 179045142 rs4701143 G A 1429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.417;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.403;SOR=0.634 GT:AD:DP:GQ:PL 0/1:86,64:150:99:1458,0,1995 5 179069468 rs62405726 A G 2007.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.058;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.5;MQ=53.83;MQRankSum=-12.578;QD=10.62;ReadPosRankSum=0.366;SOR=0.611 GT:AD:DP:GQ:PL 0/1:101,88:189:99:2036,0,2183 5 179071836 rs4990391 C T 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=5.142;MLEAC=1;MLEAF=0.5;MQ=58.1;MQRankSum=-1.994;QD=9.5;ReadPosRankSum=1.066;SOR=1.038 GT:AD:DP:GQ:PL 0/1:80,60:140:99:1358,0,1895 5 179071866 rs4990390 A G 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.588;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.5;MQ=58.95;MQRankSum=0.655;QD=13.11;ReadPosRankSum=-0.252;SOR=0.58 GT:AD:DP:GQ:PL 0/1:81,84:165:99:2192,0,1821 5 179071892 rs4990389 C T 57.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=18.154;MLEAC=1;MLEAF=0.5;MQ=58.58;MQRankSum=-11.56;QD=0.33;ReadPosRankSum=-2.639;SOR=2.65 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,12:176:86:0|1:179071892_C_T:86,0,6860 5 179071893 rs4990388 A G 57.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.637;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=7.516;MLEAC=1;MLEAF=0.5;MQ=58.47;MQRankSum=-10.881;QD=0.32;ReadPosRankSum=-3.391;SOR=1.409 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,15:180:86:0|1:179071892_C_T:86,0,6860 5 179071947 rs4645306 A G 1681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=58.48;MQRankSum=3.276;QD=8.95;ReadPosRankSum=0.503;SOR=0.749 GT:AD:DP:GQ:PL 0/1:107,81:188:99:1710,0,3343 5 179071958 rs7731123 C G 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.201;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.5;MQ=58.43;MQRankSum=-7.4;QD=4.5;ReadPosRankSum=2.717;SOR=0.74 GT:AD:DP:GQ:PL 0/1:141,50:191:99:888,0,4765 5 179193598 rs3797776 C T 6385.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6414,647,0 5 179201847 rs6895902 G A 5007.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5036,478,0 5 179223238 rs2306795 T C 1984.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.64;SOR=1.217 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2013,177,0 5 179260153 rs4935 C T 2117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.907;SOR=0.652 GT:AD:DP:GQ:PL 0/1:117,94:211:99:2146,0,2968 5 179260213 rs4797 G A 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.743;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=0.697;SOR=0.654 GT:AD:DP:GQ:PL 0/1:91,73:164:99:1551,0,2484 5 179264731 rs10277 T C 2412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.379;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=0.82;SOR=0.654 GT:AD:DP:GQ:PL 0/1:95,89:184:99:2441,0,2508 5 179267949 rs248248 T C 2847.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2876,300,0 5 179280379 rs1650893 T C 1279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=1.907;SOR=0.594 GT:AD:DP:GQ:PL 0/1:42,57:99:99:1308,0,1095 5 179290845 rs30386 T G 5252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.408;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.582;SOR=0.78 GT:AD:DP:GQ:PL 0/1:171,208:379:99:5281,0,3803 5 179498595 rs3749821 C T 3231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=2.1;SOR=0.678 GT:AD:DP:GQ:PL 0/1:100,129:229:99:3260,0,2463 5 179498658 rs3828698 G T 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-1.296;SOR=0.767 GT:AD:DP:GQ:PL 0/1:85,95:180:99:2181,0,2061 5 179529124 rs7725201 G A 428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.704;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.5;MQ=63.07;MQRankSum=-3.438;QD=6.92;ReadPosRankSum=0.31;SOR=0.525 GT:AD:DP:GQ:PL 0/1:42,20:62:99:457,0,1084 5 179555407 rs13354066 T C 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.328;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=0.019;SOR=0.835 GT:AD:DP:GQ:PL 0/1:52,48:100:99:1372,0,1346 5 179563359 rs55638756 C T 2355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.96;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-0.075;SOR=0.484 GT:AD:DP:GQ:PL 0/1:82,99:181:99:2384,0,3126 5 179563368 rs13165523 A G 2142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.173;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=2.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.872;SOR=0.913 GT:AD:DP:GQ:PL 0/1:103,90:193:99:2171,0,3980 5 179563435 rs11546322 T C 2949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.856;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.13;ReadPosRankSum=0.248;SOR=0.545 GT:AD:DP:GQ:PL 0/1:84,111:195:99:2978,0,1911 5 179563532 rs2890346 G C 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.794;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=2.235;SOR=0.867 GT:AD:DP:GQ:PL 0/1:115,96:211:99:2359,0,2815 5 179565071 rs4700878 G C 2481.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2510,219,0 5 179729519 rs1035411 A G 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.684;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.613;SOR=0.54 GT:AD:DP:GQ:PL 0/1:54,61:115:99:1251,0,1250 5 179734200 rs73343449 A G 1113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.713;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-1.085;QD=11.14;ReadPosRankSum=1.273;SOR=0.455 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1142,0,1306 5 179996111 rs6877400 C T 2808.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2837,273,0 5 180030313 rs307821 C A 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.975;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.891;SOR=0.562 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,102:223:99:0|1:180030313_C_A:2359,0,4695 5 180030322 rs79620092 C T 2741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=1.016;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,118:219:99:1|0:180030313_C_A:2770,0,3864 5 180043388 rs1130378 G A 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.354;SOR=0.762 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2393,0,2279 5 180046344 rs448012 G C 820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.57;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.64;ReadPosRankSum=-1.291;SOR=0.69 GT:AD:DP:GQ:PL 0/1:56,39:95:99:849,0,1468 5 180047863 rs423086 C G 5893.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5922,564,0 5 180051003 rs307826 T C 2201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.527;SOR=0.691 GT:AD:DP:GQ:PL 0/1:87,99:186:99:2230,0,1940 5 180055862 rs383985 T G 1603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.009;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.53;ReadPosRankSum=-2.322;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,43:97:99:0|1:180055862_T_G:1632,0,2675 5 180055864 rs438464 G A 1603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.2;ReadPosRankSum=-1.708;SOR=0.64 GT:AD:DP:GQ:PGT:PID:PL 0/1:56,43:99:99:0|1:180055862_T_G:1632,0,2675 5 180166461 rs10464105 C G 5988.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.83;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,177:177:99:6017,531,0 5 180218668 rs634501 A G 2811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.574;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.733;SOR=0.903 GT:AD:DP:GQ:PL 0/1:128,117:245:99:2840,0,3075 5 180276402 rs168726 C T 6002.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6031,588,0 5 180278393 rs705441 C G 6298.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.47;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6327,581,0 5 180338368 rs2276995 A G 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.446;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.151;SOR=0.64 GT:AD:DP:GQ:PL 0/1:107,101:208:99:2433,0,2560 5 180374534 rs3733756 G A 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.373;SOR=0.573 GT:AD:DP:GQ:PL 0/1:102,95:197:99:2084,0,2508 5 180430895 rs11954740 G A 3297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.5;MQ=57.54;MQRankSum=6.817;QD=13.14;ReadPosRankSum=-0.575;SOR=0.738 GT:AD:DP:GQ:PL 0/1:115,136:251:99:3326,0,2609 5 180432416 rs7726150 C T 8257.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.92;QD=29.92;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8286,828,0 5 180472498 rs28677846 C T 2265.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2294,237,0 5 180472513 rs6894087 A G 2525.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2554,272,0 5 180477253 rs367635312 AC A 3550.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.359;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.659;QD=16.36;ReadPosRankSum=-0.883;SOR=0.536 GT:AD:DP:GQ:PL 0/1:103,114:217:99:3588,0,3186 5 180486224 rs7379015 T G 5207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.6;ReadPosRankSum=1.611;SOR=0.505 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,143:280:99:0|1:180486224_T_G:5236,0,6944 5 180486247 rs6601166 G T 4900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.02;ReadPosRankSum=-0.337;SOR=0.543 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,132:272:99:0|1:180486224_T_G:4929,0,6986 5 180486785 rs10068763 G C 3399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.655;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=2.78;QD=10;ReadPosRankSum=-2.116;SOR=0.71 GT:AD:DP:GQ:PL 0/1:190,150:340:99:3428,0,4482 6 335175 rs2671431 A T 5054.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5083,545,0 6 348906 rs11242812 G A 6424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.287;ClippingRankSum=0;DB;DP=580;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=0.356;SOR=0.622 GT:AD:DP:GQ:PL 0/1:307,273:580:99:6453,0,7292 6 350829 rs1129085 G A 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.863;QD=4.94;ReadPosRankSum=0.247;SOR=0.635 GT:AD:DP:GQ:PL 0/1:237,89:326:99:1638,0,6213 6 656143 rs1211554 C A 1188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.99;QD=12.51;ReadPosRankSum=0.514;SOR=0.699 GT:AD:DP:GQ:PL 0/1:46,49:95:99:1217,0,1280 6 656343 rs17136239 T C 2736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.792;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=4.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.82;ReadPosRankSum=1.347;SOR=1.004 GT:AD:DP:GQ:PL 0/1:77,96:173:99:2765,0,1993 6 656810 rs61748571 A G 4660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.321;ClippingRankSum=0;DB;DP=376;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.963;SOR=0.795 GT:AD:DP:GQ:PL 0/1:177,197:374:99:4689,0,3630 6 1313117 rs9502889 A C 14496.8 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.16;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,321:321:99:1|1:1313117_A_C:14525,981,0 6 1313121 rs9502890 A C 14610.8 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.41;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,329:329:99:1|1:1313117_A_C:14639,993,0 6 1313952 rs992327 A G 4078.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4107,408,0 6 1313980 rs147255181 C G 3460.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.044;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.37;ReadPosRankSum=1.623;SOR=0.503 GT:AD:DP:GQ:PL 1/1:1,121:122:99:3489,355,0 6 1390276 . CCCG C 49.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.55;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.82;ReadPosRankSum=-0.234;SOR=0.82 GT:AD:DP:GQ:PL 0/1:55,6:61:87:87,0,2253 6 1610250 . GC G 31.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=2.64;ReadPosRankSum=2.362;SOR=0.269 GT:AD:DP:GQ:PL 0/1:8,4:12:69:69,0,168 6 1611085 rs2230096 C T 3900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-0.924;QD=10.66;ReadPosRankSum=-0.717;SOR=0.619 GT:AD:DP:GQ:PL 0/1:190,176:366:99:3929,0,4826 6 1611569 rs79691946 C T 2961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.184;SOR=0.761 GT:AD:DP:GQ:PL 0/1:135,120:255:99:2990,0,3554 6 1611802 rs76840944 G GGGC 2440.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.956;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.255;QD=13.41;ReadPosRankSum=-0.412;SOR=0.703 GT:AD:DP:GQ:PL 0/1:113,69:186:99:2478,0,4503 6 1612243 rs73406891 T G 2685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=6.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=0.215;SOR=0.394 GT:AD:DP:GQ:PL 0/1:82,103:185:99:2714,0,2027 6 1742794 rs3734739 A G 388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.258;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.59;ReadPosRankSum=-0.387;SOR=0.382 GT:AD:DP:GQ:PL 0/1:35,24:61:99:417,0,881 6 2623930 rs9503233 G A 2688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.641;SOR=0.799 GT:AD:DP:GQ:PL 0/1:100,113:213:99:2717,0,2420 6 2675271 rs9328114 C T 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.051;SOR=0.722 GT:AD:DP:GQ:PL 0/1:41,44:85:99:944,0,899 6 2749381 rs2296356 C T 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.323;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.568;SOR=1.051 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1227,0,1306 6 2768905 rs3734500 A G 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.586;SOR=0.534 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1495,0,1332 6 2834265 rs386915 C T 2748.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=1.531 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2777,264,0 6 2838248 rs316341 G A 1137.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1166,123,0 6 2955802 rs2295769 T C 5085.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5114,503,0 6 3006807 rs4149360 A G 1966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.542;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=5.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=1.165;SOR=1.125 GT:AD:DP:GQ:PL 0/1:62,72:134:99:1995,0,1268 6 3010390 rs1143684 C T 2816.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=1.261 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2845,295,0 6 3015790 rs1049115 A G 6868.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6897,680,0 6 3077141 rs2272990 T C 2723.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=35.84;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2752,228,0 6 3154871 rs17849443 A C 3154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.957;ClippingRankSum=0;DB;DP=382;ExcessHet=3.0103;FS=19.35;MLEAC=1;MLEAF=0.5;MQ=48.64;MQRankSum=-12.306;QD=8.26;ReadPosRankSum=3.702;SOR=1.331 GT:AD:DP:GQ:PL 0/1:234,148:382:99:3183,0,5859 6 3264487 rs4959786 T C 2983.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3012,297,0 6 3264502 rs4959787 G C 3171.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3200,321,0 6 3264526 rs4959788 C T 4325.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.6;SOR=0.845 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,97:97:99:1|1:3264526_C_T:4354,292,0 6 3264527 rs4959789 T C 4325.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.6;SOR=0.845 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,97:97:99:1|1:3264526_C_T:4354,292,0 6 3285296 rs41301847 A G 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.58;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=1.741;SOR=0.544 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,97:183:99:0|1:3285286_A_G:2183,0,1992 6 3287118 rs6910086 T C 5534.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=2.151 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5563,539,0 6 4031998 rs9503893 A G 1318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.422;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=5.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.191;SOR=0.778 GT:AD:DP:GQ:PL 0/1:64,52:116:99:1347,0,1710 6 4044214 rs35085092 A G 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.808;SOR=0.734 GT:AD:DP:GQ:PL 0/1:86,90:176:99:2059,0,2078 6 4052172 rs201645860 A AT 585.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.339;SOR=0.573 GT:AD:DP:GQ:PL 0/1:19,27:49:99:623,0,298 6 4057429 rs853408 A G 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-0.319;SOR=0.663 GT:AD:DP:GQ:PL 0/1:52,37:89:99:841,0,1341 6 4069133 rs10485172 T C 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=1.407;SOR=0.719 GT:AD:DP:GQ:PL 0/1:97,88:185:99:2104,0,2288 6 4069166 rs595413 C T 2211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.67;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-0.173;SOR=0.664 GT:AD:DP:GQ:PL 0/1:79,88:167:99:2240,0,2000 6 4069685 rs639905 C T 1910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=3.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-0.962;SOR=0.961 GT:AD:DP:GQ:PL 0/1:101,86:187:99:1939,0,2598 6 4087934 rs619483 G C 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=8.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.834;SOR=0.614 GT:AD:DP:GQ:PL 0/1:82,64:149:99:1500,0,2154 6 4116262 rs7166 G A 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=0.145;SOR=0.852 GT:AD:DP:GQ:PL 0/1:58,61:119:99:1510,0,1451 6 4119516 rs2326408 A G 947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.089;QD=10.3;ReadPosRankSum=0.646;SOR=0.651 GT:AD:DP:GQ:PL 0/1:49,43:92:99:976,0,1172 6 4122249 rs643232 C A 1060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.266;SOR=0.688 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1089,0,1009 6 4133855 rs3177253 C T 1856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=5.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.044;SOR=0.573 GT:AD:DP:GQ:PL 0/1:98,81:179:99:1885,0,2544 6 4944004 rs34649909 T TA,TAAA 891.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=25.48;ReadPosRankSum=-0.403;SOR=0.484 GT:AD:DP:GQ:PL 1/2:4,18,13:51:99:920,394,349,306,0,531 6 5086070 rs667752 A G 8349.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8378,825,0 6 5086211 rs584962 G C 6447.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6476,597,0 6 5086558 rs436556 C A 7493.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.16;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7522,678,0 6 6003513 rs3792947 A C 1459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=0.478;SOR=0.632 GT:AD:DP:GQ:PL 0/1:45,60:105:99:1488,0,1047 6 6174866 rs5982 G A 2294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.242;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-1.732;SOR=0.877 GT:AD:DP:GQ:PL 0/1:98,96:194:99:2323,0,2266 6 6318795 rs5985 C A 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.502;SOR=0.6 GT:AD:DP:GQ:PL 0/1:99,96:195:99:2322,0,2276 6 6320808 rs2815822 T G 4846.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4875,485,0 6 7187773 . C CTTTTATTTTA 697.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.36;ReadPosRankSum=-0.322;SOR=0.693 GT:AD:DP:GQ:PL 0/1:19,19:38:99:735,0,1824 6 7231843 rs9379084 G A 2178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.676;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-1.311;SOR=0.517 GT:AD:DP:GQ:PL 0/1:104,93:197:99:2207,0,2962 6 7295605 rs9502587 A G 828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-0.39;SOR=0.473 GT:AD:DP:GQ:PL 0/1:35,39:74:99:857,0,840 6 7368917 rs1324502 A G 370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=1.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=2.103;SOR=0.317 GT:AD:DP:GQ:PL 0/1:10,15:25:99:399,0,283 6 7387236 rs9406026 G A 885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.14;SOR=0.735 GT:AD:DP:GQ:PL 0/1:37,38:75:99:914,0,939 6 7393452 rs2274212 C T 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=5.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.308;SOR=0.771 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1490,0,1565 6 7563983 rs2806234 T G 2865.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2894,273,0 6 7572262 rs2076304 A G 2116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.623;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=3.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=1.48;SOR=0.997 GT:AD:DP:GQ:PL 0/1:83,87:170:99:2145,0,1922 6 7576527 rs1016835 G A 1989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.648;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=1.332;SOR=1.053 GT:AD:DP:GQ:PL 0/1:68,74:142:99:2018,0,1665 6 7577260 rs2064217 C T 945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=-1.094;SOR=0.643 GT:AD:DP:GQ:PL 0/1:56,44:100:99:974,0,1468 6 7581636 rs6929069 G A 2981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.199;SOR=0.581 GT:AD:DP:GQ:PL 0/1:117,122:239:99:3010,0,3184 6 7584617 rs2076300 C T 3028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-2.467;SOR=0.788 GT:AD:DP:GQ:PL 0/1:113,130:243:99:3057,0,2586 6 7585967 rs2744380 G C 3166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.908;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=3.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=1.419;SOR=0.815 GT:AD:DP:GQ:PL 0/1:196,136:332:99:3195,0,4889 6 7590624 rs2757594 C T 2387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.471;SOR=0.664 GT:AD:DP:GQ:PL 0/1:132,96:228:99:2416,0,3588 6 7590653 rs2744384 A G 7100.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.57;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,218:218:99:7129,654,0 6 7601720 rs3734586 C T 1515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.422;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.231;SOR=0.693 GT:AD:DP:GQ:PL 0/1:63,63:126:99:1544,0,1525 6 7606255 rs2757597 G A 4196.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.313 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4225,423,0 6 7727271 rs111588693 G A 5815.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5844,591,0 6 7845577 rs2241669 C T 1318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-1.356;SOR=0.473 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1347,0,1417 6 7862631 rs17557 G C 3637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.51;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.922;SOR=0.626 GT:AD:DP:GQ:PL 0/1:199,162:361:99:3666,0,4766 6 7889088 rs1225944 A G 2518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.549;SOR=0.668 GT:AD:DP:GQ:PL 0/1:97,103:200:99:2547,0,2221 6 10587038 rs539351 C G 3609.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3638,354,0 6 10764727 rs126405 A G 1703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.097;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=0.849;SOR=0.644 GT:AD:DP:GQ:PL 0/1:78,80:158:99:1732,0,1680 6 10891781 rs1538441 C T 1680.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=64.36;QD=28.49;SOR=1.316 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1709,175,0 6 10942994 rs34079965 CT C 450.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.491;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=4.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.5;ReadPosRankSum=-0.713;SOR=0.899 GT:AD:DP:GQ:PL 0/1:25,28:77:99:488,0,545 6 10955408 rs1225746 C T 3193.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.3;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3222,350,0 6 11190626 rs941982 A G 2921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.929;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=-2.236;SOR=0.522 GT:AD:DP:GQ:PL 0/1:105,113:218:99:2950,0,2584 6 11192575 rs1465131 C T 749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.244;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.82;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.842;QD=8.33;ReadPosRankSum=-0.225;SOR=0.859 GT:AD:DP:GQ:PL 0/1:56,34:90:99:778,0,1389 6 11538534 rs821443 C T 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.33;SOR=0.5 GT:AD:DP:GQ:PL 0/1:53,51:104:99:1097,0,1256 6 12120445 rs2228215 A G 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.836;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=1.15;SOR=0.939 GT:AD:DP:GQ:PL 0/1:90,71:161:99:1888,0,2206 6 12120588 rs2228209 C T 2275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.017;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=1.303;SOR=0.706 GT:AD:DP:GQ:PL 0/1:61,88:149:99:2304,0,1454 6 12121944 rs201669166 T C 2193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.938;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=1.585;SOR=0.751 GT:AD:DP:GQ:PL 0/1:112,85:197:99:2222,0,2720 6 12122174 rs2228210 A G 2538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.154;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-0.716;SOR=0.882 GT:AD:DP:GQ:PL 0/1:103,102:205:99:2567,0,2495 6 12122645 rs6900196 A G 4660.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4689,447,0 6 12122773 rs2228211 T C 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=0.555;SOR=0.648 GT:AD:DP:GQ:PL 0/1:84,70:154:99:1709,0,2167 6 12124855 rs2228213 G A 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.19;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.606;SOR=0.781 GT:AD:DP:GQ:PL 0/1:89,71:160:99:1687,0,2341 6 12125772 rs1126472 A G 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=0.819;SOR=0.807 GT:AD:DP:GQ:PL 0/1:56,72:128:99:1823,0,1249 6 12164224 rs138251849 G A 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.112;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.204;SOR=0.941 GT:AD:DP:GQ:PL 0/1:102,88:190:99:2250,0,2497 6 12294258 rs5369 A G 4624.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4653,476,0 6 13307824 rs2439537 C T 3350.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3379,324,0 6 13365913 rs9367440 C G 3452.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.23;SOR=2.117 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3481,294,0 6 13470113 rs766773 A T 1277.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1306,126,0 6 13592135 rs3734674 C T 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=5.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.874;SOR=0.403 GT:AD:DP:GQ:PL 0/1:73,81:154:99:1967,0,1823 6 13599303 rs3757261 C T 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.607;SOR=0.631 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1521,0,1900 6 13659079 rs204232 T G 1058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.263;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.155;SOR=0.732 GT:AD:DP:GQ:PL 0/1:43,44:87:99:1087,0,1007 6 13711279 rs6905991 A G 3469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.799;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.32;SOR=0.573 GT:AD:DP:GQ:PL 0/1:113,136:249:99:3498,0,2602 6 13794110 rs4715568 C A 1685.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.19;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1714,184,0 6 13800626 rs3215484 TAA T 95.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.463;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.3;ReadPosRankSum=0.647;SOR=0.999 GT:AD:DP:GQ:PL 0/1:23,6:29:99:133,0,763 6 13814338 rs12206286 G A 3645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.017;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=2.258;SOR=0.64 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,145:269:99:0|1:13814338_G_A:3674,0,2919 6 13814340 rs1204145 T C 10230.8 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.75;SOR=0.777 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,271:271:99:1|1:13814338_G_A:10259,815,0 6 14131804 rs7743206 G A 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.808;SOR=0.523 GT:AD:DP:GQ:PL 0/1:73,80:153:99:1997,0,1807 6 15513482 rs2235258 G A 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=0.066;SOR=0.61 GT:AD:DP:GQ:PL 0/1:129,97:226:99:2181,0,3519 6 15586009 rs6926401 G T 7873.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.306;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=3.119;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.82;ReadPosRankSum=-0.599;SOR=0.314 GT:AD:DP:GQ:PL 1/1:1,282:283:99:7902,838,0 6 16306751 rs16885 G A 2926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.228;SOR=0.743 GT:AD:DP:GQ:PL 0/1:128,125:253:99:2955,0,3259 6 16327615 rs179990 A G 14528.8 PASS AC=2;AF=1;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,472:472:99:14557,1415,0 6 16327864 . G GTGC 4467.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.684;ClippingRankSum=0;DP=537;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=21.58;ReadPosRankSum=-4.971;SOR=1.002 GT:AD:DP:GQ:PL 0/1:29,178:207:99:4505,0,447 6 17543302 rs9256 A G 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.837;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.436;SOR=0.778 GT:AD:DP:GQ:PL 0/1:53,49:102:99:1332,0,1253 6 17629616 rs942467 G A 3290.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3319,318,0 6 17633061 rs2274136 C T 1579.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1608,162,0 6 17665479 rs6906499 G C 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.899;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=0.057;SOR=1.141 GT:AD:DP:GQ:PL 0/1:37,24:61:99:591,0,889 6 17669262 rs201122253 GA G 193.7 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.071;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=6.2;MLEAC=1;MLEAF=0.5;MQ=60.62;MQRankSum=0.901;QD=8.8;ReadPosRankSum=-1.423;SOR=0.305 GT:AD:DP:GQ:PL 0/1:8,14:31:99:224,0,220 6 17675246 rs2228375 T C 1385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=0.188;SOR=0.839 GT:AD:DP:GQ:PL 0/1:88,62:150:99:1414,0,2129 6 17764530 rs9371018 C T 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.88;SOR=0.586 GT:AD:DP:GQ:PL 0/1:97,80:177:99:1967,0,2384 6 17764755 rs2296197 T C 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.028;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=-2.246;SOR=0.843 GT:AD:DP:GQ:PL 0/1:81,87:168:99:2331,0,1939 6 17781450 rs942376 G A 1221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.06;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=-0.285;SOR=0.859 GT:AD:DP:GQ:PL 0/1:84,55:139:99:1250,0,2094 6 17794494 rs3734234 G A 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=0.098;SOR=0.469 GT:AD:DP:GQ:PL 0/1:50,60:112:99:1490,0,1310 6 17817235 rs9383327 C G 4372.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4401,414,0 6 17834198 rs4716189 T G 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=5.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.83;ReadPosRankSum=-0.843;SOR=1.371 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,36:60:99:1|0:17834194_G_T:1398,0,1140 6 17834213 rs4716190 T C 1407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=5.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.71;ReadPosRankSum=-0.856;SOR=1.093 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,38:62:99:1|0:17834194_G_T:1436,0,1140 6 17834316 rs4716191 T C 455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.116;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-2.026;SOR=0.917 GT:AD:DP:GQ:PL 0/1:15,20:35:99:484,0,348 6 17855864 rs624105 G C 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=5.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=1.796;SOR=1.258 GT:AD:DP:GQ:PL 0/1:52,41:93:99:1032,0,1325 6 18122022 . G A 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.563;ClippingRankSum=0;DP=179;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.39;SOR=0.534 GT:AD:DP:GQ:PL 0/1:94,85:179:99:2078,0,2724 6 18122526 rs115931931 A G 3867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.192;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.429;SOR=0.617 GT:AD:DP:GQ:PL 0/1:165,150:315:99:3896,0,3999 6 18130918 rs1142345 T C 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.233;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=1.26;SOR=0.682 GT:AD:DP:GQ:PL 0/1:27,49:76:99:1189,0,537 6 18139214 rs2842934 G A 638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=0.153;SOR=0.722 GT:AD:DP:GQ:PL 0/1:55,34:89:99:667,0,1330 6 18139228 rs1800460 C T 692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.61;ReadPosRankSum=-0.523;SOR=0.627 GT:AD:DP:GQ:PL 0/1:56,35:91:99:721,0,1375 6 18148155 rs368770445 GA G 32.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.984;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.46;ReadPosRankSum=0.684;SOR=0.783 GT:AD:DP:GQ:PL 0/1:59,12:71:70:70,0,1395 6 18197475 rs214621 A G 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.635;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=1.202;SOR=0.897 GT:AD:DP:GQ:PL 0/1:39,47:86:99:1236,0,959 6 18213988 rs6903583 C T 1176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.5;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=4.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.19;SOR=1.203 GT:AD:DP:GQ:PL 0/1:57,47:104:99:1205,0,1336 6 18215303 rs214585 T C 5045.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=29.86;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5074,506,0 6 18399750 rs2296198 T C 3792.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3821,354,0 6 19837966 rs1047316 T C 2781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.456;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.76;ReadPosRankSum=0.229;SOR=0.509 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,71:134:99:0|1:19837966_T_C:2810,0,2999 6 19837969 rs12662234 A G 2781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.45;ReadPosRankSum=1.64;SOR=0.515 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,72:136:99:0|1:19837966_T_C:2810,0,2999 6 21065450 rs56087852 A G 833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=1.188;SOR=0.76 GT:AD:DP:GQ:PL 0/1:37,36:73:99:862,0,943 6 21201493 rs9465994 G A 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-0.326;SOR=0.555 GT:AD:DP:GQ:PL 0/1:66,53:119:99:1119,0,1702 6 24174955 rs9358755 G C 1575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.01;ReadPosRankSum=-0.778;SOR=0.802 GT:AD:DP:GQ:PL 0/1:38,67:105:99:1604,0,816 6 24205236 rs9467075 G A 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.34;ReadPosRankSum=-0.366;SOR=0.797 GT:AD:DP:GQ:PL 0/1:63,40:103:99:784,0,1464 6 24291203 rs2274305 T C 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-1.538;SOR=0.717 GT:AD:DP:GQ:PL 0/1:47,49:96:99:1145,0,1243 6 24302087 rs807703 G A 4647.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4676,438,0 6 24403455 rs11695 C T 2195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.821;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.076;SOR=0.727 GT:AD:DP:GQ:PL 0/1:105,81:186:99:2224,0,2564 6 24411018 rs78721070 A G 688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=0.186;SOR=0.495 GT:AD:DP:GQ:PL 0/1:34,34:68:99:717,0,834 6 24412431 . G GT 49.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.726;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.13;ReadPosRankSum=0.233;SOR=0.845 GT:AD:DP:GQ:PL 0/1:35,9:50:87:87,0,724 6 24418348 rs2793422 G A 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=1.009;SOR=0.446 GT:AD:DP:GQ:PL 0/1:54,44:98:99:947,0,1403 6 24418786 rs79527965 T C 1132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.739;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.894;QD=11.68;ReadPosRankSum=1.098;SOR=0.553 GT:AD:DP:GQ:PL 0/1:52,45:97:99:1161,0,1282 6 24423149 rs3833457 C CTG 1060.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.83;ReadPosRankSum=-0.655;SOR=0.834 GT:AD:DP:GQ:PL 0/1:36,31:67:99:1098,0,1337 6 24433483 rs9461006 T C 854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=-1.546;SOR=0.549 GT:AD:DP:GQ:PL 0/1:24,37:61:99:883,0,566 6 24437445 rs1772256 G A 4667.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.46;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4696,508,0 6 24437458 rs1042303 T C 1632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.669;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.309;SOR=0.61 GT:AD:DP:GQ:PL 0/1:93,76:169:99:1661,0,2073 6 24463020 rs17300770 G C 464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.818;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.26;ReadPosRankSum=1.513;SOR=1.197 GT:AD:DP:GQ:PL 0/1:42,22:64:99:493,0,1057 6 24554762 rs2243831 T C 373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.541;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.34;ReadPosRankSum=-0.757;SOR=0.693 GT:AD:DP:GQ:PL 0/1:40,19:59:99:402,0,1008 6 24596478 rs4576240 T G 5680.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5709,522,0 6 24653283 rs11559067 T C 2366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.181;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=-1.014;SOR=0.783 GT:AD:DP:GQ:PL 0/1:69,92:161:99:2395,0,1509 6 24653376 rs1129644 G A 1017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-1.551;SOR=0.406 GT:AD:DP:GQ:PL 0/1:62,47:109:99:1046,0,1518 6 24687933 rs3033242 AT A 123.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.26;ReadPosRankSum=-0.616;SOR=0.906 GT:AD:DP:GQ:PL 0/1:25,13:53:99:161,0,454 6 24797647 rs2251702 A G 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.044;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.59;ReadPosRankSum=0.988;SOR=0.646 GT:AD:DP:GQ:PL 0/1:50,64:114:99:1806,0,1232 6 24798959 rs75474054 CCTT C 2677.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.226;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.811;QD=17.97;ReadPosRankSum=-0.424;SOR=0.914 GT:AD:DP:GQ:PL 0/1:77,72:149:99:2715,0,3433 6 24806594 rs9358799 C T 634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.09;QD=9.33;ReadPosRankSum=-0.544;SOR=0.52 GT:AD:DP:GQ:PL 0/1:36,32:68:99:663,0,859 6 24818785 rs9358802 A G 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=1.273;SOR=0.727 GT:AD:DP:GQ:PL 0/1:41,48:89:99:1108,0,942 6 24825511 rs9358804 A G 3486.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3515,353,0 6 24828449 rs61741706 C T 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.378;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=0.927;SOR=0.646 GT:AD:DP:GQ:PL 0/1:84,56:140:99:1317,0,2036 6 24840986 rs75574668 G A 944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=1.292;SOR=0.88 GT:AD:DP:GQ:PL 0/1:41,38:79:99:973,0,1171 6 24847851 rs74477879 G C 1176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=0.828;SOR=0.819 GT:AD:DP:GQ:PL 0/1:83,51:134:99:1205,0,2273 6 24848331 rs35698586 T C 1271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.351;SOR=0.522 GT:AD:DP:GQ:PL 0/1:89,59:148:99:1300,0,2224 6 24848345 rs35254980 C A 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.087;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=1.554;SOR=0.501 GT:AD:DP:GQ:PL 0/1:87,57:144:99:1264,0,2191 6 24865659 rs11967003 G C 908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.897;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=-1.194;SOR=0.729 GT:AD:DP:GQ:PL 0/1:61,45:106:99:937,0,1680 6 25285026 . C CT 427.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=1.93;SOR=1.091 GT:AD:DP:GQ:PL 0/1:12,19:33:99:465,0,196 6 25420344 rs913455 C G 3333.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3362,347,0 6 25426768 rs9358856 G A 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.496;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=2.023;SOR=0.68 GT:AD:DP:GQ:PL 0/1:67,62:129:99:1434,0,1535 6 25435758 rs9467515 A G 4137.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4166,414,0 6 25472651 rs148871802 G A 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.795;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.787;SOR=0.613 GT:AD:DP:GQ:PL 0/1:45,43:88:99:949,0,957 6 25472737 rs41271815 C T 1103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.35;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.819;SOR=0.489 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1132,0,1176 6 25509976 rs4568443 T C 1736.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.57;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1765,189,0 6 25511008 rs34965228 C CAT 1274.73 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=42.49;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,30:30:90:1312,90,0 6 25600968 rs10456324 G A 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=4.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.295;SOR=1.107 GT:AD:DP:GQ:PL 0/1:88,66:154:99:1623,0,2474 6 25605091 rs1012899 G A 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.84;SOR=0.576 GT:AD:DP:GQ:PL 0/1:62,70:132:99:1558,0,1345 6 25726343 rs6940348 C T 2332.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=1.739 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2361,222,0 6 25726621 rs9467583 C T 2272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.683;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.361;SOR=0.707 GT:AD:DP:GQ:PL 0/1:110,92:202:99:2301,0,2510 6 25726675 rs9358871 G A 2872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.036;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=1.04;SOR=0.683 GT:AD:DP:GQ:PL 0/1:96,122:218:99:2901,0,2205 6 25726774 rs4711095 A C 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.031;SOR=0.606 GT:AD:DP:GQ:PL 0/1:60,68:128:99:1599,0,1517 6 25727265 rs4712960 C T 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=0.643;SOR=0.715 GT:AD:DP:GQ:PL 0/1:79,67:146:99:1687,0,2139 6 25727334 rs4712961 C T 1615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.165;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=3.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-2.364;SOR=0.624 GT:AD:DP:GQ:PL 0/1:80,67:147:99:1644,0,1933 6 25727517 rs9358872 G A 1262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-0.845;SOR=0.671 GT:AD:DP:GQ:PL 0/1:47,51:98:99:1291,0,1140 6 25769349 rs1892251 T C 5579.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5608,560,0 6 25770707 rs4712970 G A 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-1.941;SOR=1.168 GT:AD:DP:GQ:PL 0/1:42,37:79:99:920,0,1056 6 25778182 rs2328894 C T 725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.474;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=-0.641;SOR=0.927 GT:AD:DP:GQ:PL 0/1:60,33:93:99:754,0,1502 6 25813150 rs1165196 G A 3225.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3254,339,0 6 25849620 rs942379 A G 1700.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.57;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1729,192,0 6 25914801 rs2071299 G A 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.859;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=2.832;SOR=0.833 GT:AD:DP:GQ:PL 0/1:48,36:84:99:824,0,1044 6 25914901 rs2071298 G A 514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.464;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=7.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.3;ReadPosRankSum=0.486;SOR=1.619 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,23:62:99:0|1:25914901_G_A:543,0,912 6 25916979 rs1865760 C T 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.316;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-1.031;SOR=0.809 GT:AD:DP:GQ:PL 0/1:73,59:132:99:1228,0,1939 6 25967068 rs2009610 C T 3158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.361;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.059;SOR=0.666 GT:AD:DP:GQ:PL 0/1:130,128:258:99:3187,0,3207 6 26017542 rs16891235 T C 2305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.425;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=1.808;SOR=0.739 GT:AD:DP:GQ:PL 0/1:68,88:156:99:2334,0,1586 6 26027433 rs3752419 G A 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-1.031;SOR=0.827 GT:AD:DP:GQ:PL 0/1:86,83:169:99:1913,0,2165 6 26031868 rs2213284 G A 3788.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3817,371,0 6 26033506 rs2230655 G A 9672.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.06 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9701,944,0 6 26033809 rs3842706 T TAAG 5234.73 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=44.74;SOR=2.282 GT:AD:DP:GQ:PL 1/1:0,117:117:99:5272,357,0 6 26045929 rs3752416 T C 7864.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7893,742,0 6 26056072 rs8384 G C 2060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=1.097;SOR=0.581 GT:AD:DP:GQ:PL 0/1:83,84:167:99:2089,0,2121 6 26056399 rs61748580 G A 2282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.094;SOR=0.667 GT:AD:DP:GQ:PL 0/1:80,90:170:99:2311,0,2128 6 26056477 rs41266787 A C 2292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.24;ReadPosRankSum=1.025;SOR=0.561 GT:AD:DP:GQ:PL 0/1:76,85:161:99:2321,0,2101 6 26056549 rs10425 A G 7155.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7184,696,0 6 26104280 rs2229768 T C 2725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.919;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=1.586;SOR=0.609 GT:AD:DP:GQ:PL 0/1:95,107:202:99:2754,0,2174 6 26108282 rs198844 C G 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.418;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.087;SOR=0.895 GT:AD:DP:GQ:PL 0/1:76,55:131:99:1416,0,1937 6 26184102 rs7766641 G A 14455.8 PASS AC=2;AF=1;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=32.2;SOR=1.536 GT:AD:DP:GQ:PL 1/1:0,449:449:99:14484,1346,0 6 26200083 rs1059486 A G 18969.8 PASS AC=2;AF=1;AN=2;DB;DP=601;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=31.67;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,599:599:99:18998,1797,0 6 26285560 rs2393592 A G 8231.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=31.18;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8260,791,0 6 26285683 rs2393593 T C 6019.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6048,587,0 6 26369080 rs41290371 T C 742.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.164;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=8;MLEAC=1;MLEAF=0.5;MQ=27.89;MQRankSum=-2.936;QD=7.28;ReadPosRankSum=-2.435;SOR=2.626 GT:AD:DP:GQ:PL 0/1:66,36:102:99:771,0,1824 6 26392934 rs2072802 C T 3741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=6.35;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-0.377;QD=10.94;ReadPosRankSum=1.958;SOR=0.808 GT:AD:DP:GQ:PL 0/1:193,149:342:99:3770,0,5342 6 26405835 rs56161420 G A 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=2.249;SOR=0.627 GT:AD:DP:GQ:PL 0/1:69,60:129:99:1389,0,1693 6 26406255 rs3857550 G A 1221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.465;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=50.422;MLEAC=1;MLEAF=0.5;MQ=45.47;MQRankSum=-3.959;QD=3.5;ReadPosRankSum=-1.952;SOR=2.632 GT:AD:DP:GQ:PL 0/1:282,67:349:99:1250,0,7209 6 26406424 rs142058993 T C 95.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.499;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=5.852;MLEAC=1;MLEAF=0.5;MQ=32.47;MQRankSum=2.429;QD=1.5;ReadPosRankSum=-0.147;SOR=0.098 GT:AD:DP:GQ:PL 0/1:56,8:64:99:124,0,1651 6 26410227 rs7770214 G A 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=1.701;SOR=0.689 GT:AD:DP:GQ:PL 0/1:94,112:206:99:2677,0,2251 6 26413744 rs4712990 C A 2176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=7.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=0.658;SOR=0.89 GT:AD:DP:GQ:PL 0/1:140,96:236:99:2205,0,3576 6 26443853 rs56036950 C A 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=4.663;MLEAC=1;MLEAF=0.5;MQ=48.05;MQRankSum=-6.001;QD=9.85;ReadPosRankSum=0.105;SOR=0.644 GT:AD:DP:GQ:PL 0/1:117,101:218:99:2175,0,2712 6 26444168 rs143665311 C T 3356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.922;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=7.707;MLEAC=1;MLEAF=0.5;MQ=47.52;MQRankSum=-2.198;QD=13.01;ReadPosRankSum=-0.399;SOR=0.368 GT:AD:DP:GQ:PL 0/1:122,136:258:99:3385,0,3460 6 26446209 rs3846848 C T 3325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.194;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.329;SOR=0.72 GT:AD:DP:GQ:PL 0/1:197,141:338:99:3354,0,4969 6 26501598 rs112012632 GTC G 149.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.137;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=8.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.65;ReadPosRankSum=-1.291;SOR=1.939 GT:AD:DP:GQ:PL 0/1:79,12:91:99:187,0,2713 6 26501897 rs1321479 T C 4366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.246;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=6.487;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=-1.12;QD=13.19;ReadPosRankSum=-0.616;SOR=0.734 GT:AD:DP:GQ:PL 0/1:146,185:331:99:4395,0,3145 6 26505135 rs3736780 C T 2717.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.636 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2746,267,0 6 26505268 rs149886741 G A 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-1.024;SOR=0.727 GT:AD:DP:GQ:PL 0/1:77,66:143:99:1572,0,2126 6 26505362 rs3736781 G A 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=5.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=1.055;SOR=0.811 GT:AD:DP:GQ:PL 0/1:79,72:151:99:1695,0,2035 6 26505403 rs3736782 C A 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=7.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=0.578;SOR=0.925 GT:AD:DP:GQ:PL 0/1:92,59:151:99:1279,0,2263 6 26509330 rs9393728 C G 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.156;SOR=0.471 GT:AD:DP:GQ:PL 0/1:93,91:184:99:2373,0,2500 6 26545632 rs4871 G A 2132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=4.417;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.02;SOR=0.989 GT:AD:DP:GQ:PL 0/1:81,93:174:99:2161,0,1972 6 26597333 rs3800302 A G 3775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.084;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=3.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-0.172;SOR=0.507 GT:AD:DP:GQ:PL 0/1:143,150:293:99:3804,0,3465 6 26598188 rs3800303 A G 2922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.306;SOR=0.685 GT:AD:DP:GQ:PL 0/1:113,122:235:99:2951,0,2566 6 26637796 rs145346169 C A 290.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.66;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=29.48;MQRankSum=0.487;QD=4.69;ReadPosRankSum=-0.368;SOR=1.053 GT:AD:DP:GQ:PL 0/1:46,16:62:99:319,0,1228 6 27277051 rs41269255 C T 2473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.27;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.272;SOR=0.716 GT:AD:DP:GQ:PL 0/1:116,106:222:99:2502,0,2747 6 27277402 rs6456773 C T 5702.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5731,552,0 6 27279774 rs17688097 C T 3187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.709;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=2.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.715;SOR=0.85 GT:AD:DP:GQ:PL 0/1:140,136:276:99:3216,0,3212 6 27420588 rs61736957 G A 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.115;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.27;SOR=0.747 GT:AD:DP:GQ:PL 0/1:105,114:219:99:2794,0,2750 6 27425185 rs1883216 C A 2378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.856;SOR=0.654 GT:AD:DP:GQ:PL 0/1:81,100:181:99:2407,0,1958 6 27435707 rs2272814 G A 1064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.323;SOR=0.414 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1093,0,1275 6 27792221 rs200499 C T 4830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.191;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.5;MQ=53.51;MQRankSum=-1.036;QD=19.56;ReadPosRankSum=-0.148;SOR=0.873 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,126:247:99:0|1:27792221_C_T:4859,0,6907 6 27792228 rs200498 T C 4756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.602;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.5;MQ=53.88;MQRankSum=-0.812;QD=19.49;ReadPosRankSum=-0.268;SOR=0.917 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,123:244:99:0|1:27792221_C_T:4785,0,6937 6 27833477 rs138346783 G T 3436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.683;SOR=0.523 GT:AD:DP:GQ:PL 0/1:160,137:297:99:3465,0,4422 6 28228342 rs1679709 A G 3045.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3074,309,0 6 28239932 rs61622742 T TG 10672.7 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=37.45;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,285:285:99:10710,867,0 6 28359170 rs2859348 A G 3022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.576;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.957;SOR=0.782 GT:AD:DP:GQ:PL 0/1:102,119:221:99:3051,0,2391 6 28872446 rs209126 T C 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.88;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.39;ReadPosRankSum=0.054;SOR=0.806 GT:AD:DP:GQ:PL 0/1:49,67:116:99:1813,0,1083 6 28891423 rs11545588 G A 2198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-0.834;SOR=0.676 GT:AD:DP:GQ:PL 0/1:67,87:154:99:2227,0,1664 6 28963248 rs6456880 T G 2655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.021;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=2.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.316;SOR=0.879 GT:AD:DP:GQ:PL 0/1:99,102:201:99:2684,0,2242 6 29080004 rs28757581 A G 2629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.629;SOR=0.661 GT:AD:DP:GQ:PL 0/1:92,103:195:99:2658,0,2394 6 29080344 rs3749977 G A 1616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.647;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=1.624;SOR=1.069 GT:AD:DP:GQ:PL 0/1:103,67:170:99:1645,0,2729 6 29080349 rs3130764 A G 6388.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.72;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,174:174:99:6417,525,0 6 29080450 rs3130765 G A 5568.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=29.78;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5597,561,0 6 29141632 rs3116855 T C 3098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.651;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.953;QD=11.61;ReadPosRankSum=0.99;SOR=0.711 GT:AD:DP:GQ:PL 0/1:141,126:267:99:3127,0,3257 6 29141743 rs3129157 A G 5924.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5953,557,0 6 29141772 rs3129158 A G 5128.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=31.08;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5157,494,0 6 29141849 rs3116856 T C 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.361;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.384;QD=14.28;ReadPosRankSum=-1.04;SOR=0.761 GT:AD:DP:GQ:PL 0/1:79,82:161:99:2327,0,1914 6 29142054 rs3129159 C G 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.484;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-2.078;QD=15.18;ReadPosRankSum=-0.045;SOR=0.695 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,65:158:99:0|1:29142054_C_G:2426,0,4433 6 29142064 rs3130743 A G 2459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.895;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.49;MQRankSum=-1.6;QD=15.77;ReadPosRankSum=0.094;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,64:156:99:0|1:29142054_C_G:2488,0,4391 6 29274486 rs9257694 T C 974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-1.542;SOR=0.593 GT:AD:DP:GQ:PL 0/1:38,43:81:99:1003,0,897 6 29323259 rs3117438 G A 4154.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4183,417,0 6 29323905 rs6930033 A C 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=5.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.66;ReadPosRankSum=0.785;SOR=1.207 GT:AD:DP:GQ:PL 0/1:56,73:129:99:1920,0,1396 6 29364685 rs36210740 G A 1862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=5.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=1.256;SOR=0.714 GT:AD:DP:GQ:PL 0/1:70,81:151:99:1891,0,1765 6 29364787 rs3128853 C T 4923.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4952,483,0 6 29364871 rs11752608 T G 2108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.752;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=3.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.666;SOR=0.665 GT:AD:DP:GQ:PL 0/1:91,84:175:99:2137,0,2222 6 29407975 rs11755177 C T 1465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.645;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=-1.019;SOR=0.782 GT:AD:DP:GQ:PL 0/1:122,65:187:99:1494,0,3143 6 29408057 rs11755182 C A 1484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.417;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.61;ReadPosRankSum=2.105;SOR=0.736 GT:AD:DP:GQ:PL 0/1:127,68:195:99:1513,0,2991 6 29408270 rs2074468 C T 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.298;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=-1.473;SOR=0.942 GT:AD:DP:GQ:PL 0/1:107,63:170:99:1547,0,2792 6 29408528 rs2074464 A G 1662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.285;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-1.388;SOR=0.674 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1691,0,1783 6 29408554 rs10946991 A C 2003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.251;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.284;SOR=0.894 GT:AD:DP:GQ:PL 0/1:77,78:155:99:2032,0,1832 6 29455326 rs79068858 A G 3162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-2.752;SOR=0.699 GT:AD:DP:GQ:PL 0/1:133,141:274:99:3191,0,3008 6 29523676 rs8337 C G 3089.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.58;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3118,276,0 6 29555809 rs3129034 C T 743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.18;ReadPosRankSum=1.228;SOR=0.452 GT:AD:DP:GQ:PL 0/1:16,33:49:99:772,0,367 6 29555864 rs1233387 C T 650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=6.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=-1.508;SOR=0.193 GT:AD:DP:GQ:PL 0/1:19,26:45:99:679,0,552 6 29575003 rs29267 G A 1265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.365;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=1.156;SOR=0.481 GT:AD:DP:GQ:PL 0/1:37,52:89:99:1294,0,816 6 29576393 rs29230 A G 4630.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4659,467,0 6 29581011 rs29226 T G 3678.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=1.29 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3707,346,0 6 29581041 rs29225 A G 4866.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4895,488,0 6 29581110 rs17854217 A G 9284.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.85;SOR=0.703 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,207:207:99:1|1:29581110_A_G:9313,629,0 6 29581113 rs17854216 A G 9284.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.85;SOR=0.703 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,207:207:99:1|1:29581110_A_G:9313,629,0 6 29590000 rs3025629 A T 677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-1.741;SOR=1.126 GT:AD:DP:GQ:PL 0/1:25,29:54:99:706,0,580 6 29600104 rs1805056 G A 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.249;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=3.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=1.19;SOR=0.957 GT:AD:DP:GQ:PL 0/1:83,90:173:99:2111,0,1903 6 29625001 rs3130250 A G 2353.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2382,240,0 6 29634012 rs3130253 A G 2676.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2705,291,0 6 29691303 rs2076183 G A 2783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=9.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=0.097;SOR=1.258 GT:AD:DP:GQ:PL 0/1:97,111:208:99:2812,0,2383 6 29691713 rs2076182 A C 2391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.425;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.329;SOR=0.933 GT:AD:DP:GQ:PL 0/1:93,91:184:99:2420,0,2280 6 29693011 rs1736924 C T 9004.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.25 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9033,891,0 6 29694680 rs3734814 A C 2269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.026;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.46;ReadPosRankSum=0.432;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,60:130:99:0|1:29694680_A_C:2298,0,3432 6 29694681 rs3734815 A T 2269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.46;ReadPosRankSum=0.414;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,60:130:99:0|1:29694680_A_C:2298,0,3432 6 29795636 rs1630223 G A 3072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=1.222;SOR=0.606 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,82:220:99:0|1:29795636_G_A:3101,0,5564 6 29795657 rs1630185 G A 3462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=-0.337;SOR=0.758 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,101:254:99:0|1:29795636_G_A:3491,0,5993 6 29795993 rs1130355 G A 5094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.263;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=0.788;SOR=0.779 GT:AD:DP:GQ:PL 0/1:195,190:385:99:5123,0,4832 6 29796103 rs1626038 T C 3715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.665;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=3.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-1.039;SOR=0.904 GT:AD:DP:GQ:PL 0/1:143,138:281:99:3744,0,3804 6 29796306 rs1624337 G A 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=2.224;QD=10.46;ReadPosRankSum=1.516;SOR=0.662 GT:AD:DP:GQ:PL 0/1:124,102:226:99:2393,0,3487 6 29796369 rs3873252 A T 2945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=2.171;QD=10.99;ReadPosRankSum=-1.211;SOR=0.698 GT:AD:DP:GQ:PL 0/1:144,124:268:99:2974,0,3599 6 29797696 rs1130363 A G 1044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.931;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.562;SOR=0.622 GT:AD:DP:GQ:PL 0/1:59,43:102:99:1073,0,1533 6 29798140 rs915667 A G 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.017;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.128;QD=9.73;ReadPosRankSum=-1.189;SOR=0.574 GT:AD:DP:GQ:PL 0/1:72,55:127:99:1264,0,1765 6 29910324 rs114945359 G C 2816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=-0.255;SOR=0.766 GT:AD:DP:GQ:PL 0/1:86,111:197:99:2845,0,2154 6 29910371 rs2230954 C T 2664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.421;SOR=0.521 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,113:253:99:0|1:29910371_C_T:2693,0,3613 6 29910419 rs9260122 G T 4245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.171;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.12;ReadPosRankSum=0.84;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,112:248:99:0|1:29910419_G_T:4274,0,5376 6 29910420 rs9278464 GA G 4236.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.08;ReadPosRankSum=0.853;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,112:248:99:0|1:29910419_G_T:4274,0,5376 6 29910522 rs9260130 G C 4377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-6.466;QD=13.85;ReadPosRankSum=-0.224;SOR=0.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,151:316:99:0|1:29910371_C_T:4406,0,4739 6 29910557 rs1136659 T A 6986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=6.619;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-6.441;QD=18.24;ReadPosRankSum=1.743;SOR=0.463 GT:AD:DP:GQ:PGT:PID:PL 0/1:201,182:383:99:0|1:29910371_C_T:7015,0,8088 6 29910558 rs2075684 T C,A 16429.8 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.4;QD=42.56;SOR=0.884 GT:AD:DP:GQ:PL 1/2:0,182,204:386:99:16458,8674,8107,7662,0,7120 6 29910562 rs1059418 A C 8082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.811;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=6.518;MLEAC=1;MLEAF=0.5;MQ=59.41;MQRankSum=6.544;QD=20.67;ReadPosRankSum=-2.225;SOR=0.981 GT:AD:DP:GQ:PGT:PID:PL 0/1:183,208:391:99:0|1:29910371_C_T:8111,0,6965 6 29910640 rs3173429 C T 4234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.645;QD=10.46;ReadPosRankSum=-0.096;SOR=0.584 GT:AD:DP:GQ:PL 0/1:233,172:405:99:4263,0,6102 6 29910679 rs199474404 G A 3467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.47;SOR=0.703 GT:AD:DP:GQ:PL 0/1:221,146:367:99:3496,0,5847 6 29910717 rs1064588 A T 5543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=352;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.75;ReadPosRankSum=-0.52;SOR=0.523 GT:AD:DP:GQ:PGT:PID:PL 0/1:207,145:352:99:0|1:29910717_A_T:5572,0,8277 6 29910719 rs2230991 G C 5543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.105;ClippingRankSum=0;DB;DP=357;ExcessHet=3.0103;FS=2.847;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=-0.746;SOR=0.553 GT:AD:DP:GQ:PGT:PID:PL 0/1:208,149:357:99:0|1:29910717_A_T:5572,0,8277 6 29910759 rs1071742 T C 5275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.835;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.49;ReadPosRankSum=0.097;SOR=0.567 GT:AD:DP:GQ:PGT:PID:PL 0/1:179,141:320:99:0|1:29910759_T_C:5304,0,7082 6 29910761 rs1136688 G A 5278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.546;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=3.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.92;ReadPosRankSum=0.331;SOR=0.54 GT:AD:DP:GQ:PGT:PID:PL 0/1:175,137:312:99:0|1:29910759_T_C:5307,0,7061 6 29910801 rs1136692 C A 3693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.411;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.62;SOR=0.796 GT:AD:DP:GQ:PL 0/1:149,146:295:99:3722,0,3978 6 29910820 rs9260142 G C 12535.8 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.61;SOR=0.92 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,281:281:99:1|1:29910820_G_C:12564,858,0 6 29911030 rs9260151 C T 2743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.463;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=6.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=1.781;SOR=0.376 GT:AD:DP:GQ:PL 0/1:76,105:181:99:2772,0,2742 6 29911064 rs1136695 A G 3686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.464;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=3.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.1;ReadPosRankSum=2.786;SOR=0.499 GT:AD:DP:GQ:PL 0/1:103,126:229:99:3715,0,3946 6 29911086 rs1136700 T C 3102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.997;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.733;SOR=0.92 GT:AD:DP:GQ:PL 0/1:144,115:259:99:3131,0,5357 6 29911149 rs1059506 C T 4684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.5;MQ=57.88;MQRankSum=7.387;QD=13.12;ReadPosRankSum=-0.363;SOR=0.594 GT:AD:DP:GQ:PGT:PID:PL 0/1:177,180:357:99:0|1:29911149_C_T:4713,0,4622 6 29911190 rs1059514 G A 6489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.324;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=0.77;MLEAC=1;MLEAF=0.5;MQ=56.78;MQRankSum=-10.614;QD=17.17;ReadPosRankSum=0.813;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:195,183:378:99:0|1:29911190_G_A:6518,0,7446 6 29911203 rs1059517 A C 7772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.555;ClippingRankSum=0;DB;DP=385;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.5;MQ=56.83;MQRankSum=10.52;QD=20.24;ReadPosRankSum=-0.132;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:187,197:384:99:1|0:29911190_G_A:7801,0,7352 6 29911225 rs1059536 A G 7647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=0.361;MLEAC=1;MLEAF=0.5;MQ=56.79;MQRankSum=10.538;QD=19.12;ReadPosRankSum=1.309;SOR=0.656 GT:AD:DP:GQ:PGT:PID:PL 0/1:204,196:400:99:0|1:29911225_A_G:7676,0,8096 6 29911228 rs9256983 A C,T 16368.8 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=56.79;QD=40.92;SOR=0.723 GT:AD:DP:GQ:PL 1/2:0,204,196:400:99:16397,8388,7844,8158,0,8294 6 29911239 rs9260155 T C 8788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.348;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=56.96;MQRankSum=-10.324;QD=21.13;ReadPosRankSum=-1.71;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:197,219:416:99:1|0:29911225_A_G:8817,0,7638 6 29911240 rs9260156 T A 8872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.271;ClippingRankSum=0;DB;DP=417;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.97;MQRankSum=-10.402;QD=21.28;ReadPosRankSum=-1.233;SOR=0.708 GT:AD:DP:GQ:PGT:PID:PL 0/1:199,218:417:99:1|0:29911225_A_G:8901,0,7632 6 29911256 rs1059542 T G 18578.8 PASS AC=2;AF=1;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.13;QD=44.24;SOR=0.792 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,420:420:99:1|1:29911149_C_T:18607,1300,0 6 29911260 . A C 6290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.512;ClippingRankSum=0;DP=417;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.11;MQRankSum=-12.487;QD=15.09;ReadPosRankSum=0.057;SOR=0.689 GT:AD:DP:GQ:PGT:PID:PL 0/1:247,170:417:99:0|1:29911149_C_T:6319,0,9731 6 29911261 rs3129018 C G 6296.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=418;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=57.12;MQRankSum=-12.574;QD=15.06;ReadPosRankSum=-0.02;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 0/1:249,169:418:99:0|1:29911149_C_T:6325,0,9647 6 29911319 rs41554520 G T 2140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.16;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=8.468;MLEAC=1;MLEAF=0.5;MQ=59.01;MQRankSum=0.133;QD=5.42;ReadPosRankSum=1.343;SOR=0.414 GT:AD:DP:GQ:PL 0/1:280,115:395:99:2169,0,9459 6 29911326 rs2517725 A G 3152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.327;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.5;MQ=59.26;MQRankSum=3.41;QD=8.3;ReadPosRankSum=-0.095;SOR=0.747 GT:AD:DP:GQ:PL 0/1:247,133:380:99:3181,0,8138 6 29911925 rs149288080 C T 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.962;ClippingRankSum=0;DB;DP=426;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.5;MQ=50.56;MQRankSum=1.426;QD=4.39;ReadPosRankSum=0.839;SOR=0.509 GT:AD:DP:GQ:PL 0/1:308,118:426:99:1897,0,8140 6 29912028 rs45576436 AG A 936.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.644;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=48.764;MLEAC=1;MLEAF=0.5;MQ=40.53;MQRankSum=1.922;QD=2.99;ReadPosRankSum=-0.088;SOR=3.594 GT:AD:DP:GQ:PGT:PID:PL 0/1:270,43:313:99:0|1:29912028_AG_A:974,0,11312 6 29912030 rs145046067 G C 933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.657;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=48.531;MLEAC=1;MLEAF=0.5;MQ=40.31;MQRankSum=1.96;QD=2.95;ReadPosRankSum=-0.14;SOR=3.557 GT:AD:DP:GQ:PGT:PID:PL 0/1:273,43:316:99:0|1:29912028_AG_A:962,0,11428 6 29912041 rs9260181 C T 1636.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.789;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=46.756;MLEAC=1;MLEAF=0.5;MQ=39.37;MQRankSum=-2.925;QD=5.25;ReadPosRankSum=0.007;SOR=0.665 GT:AD:DP:GQ:PL 0/1:228,84:312:99:1665,0,7132 6 29912087 rs1059632 G T 1997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.115;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=13.337;MLEAC=1;MLEAF=0.5;MQ=42.09;MQRankSum=-3.906;QD=6.59;ReadPosRankSum=2.787;SOR=0.312 GT:AD:DP:GQ:PL 0/1:205,98:303:99:2026,0,5766 6 29912108 rs2231095 G C 2230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.999;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=7.604;MLEAC=1;MLEAF=0.5;MQ=43.98;MQRankSum=-3.339;QD=7.69;ReadPosRankSum=0.665;SOR=0.402 GT:AD:DP:GQ:PL 0/1:185,105:290:99:2259,0,5065 6 29912280 rs1136903 T C 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=0.597;SOR=0.766 GT:AD:DP:GQ:PL 0/1:95,67:162:99:1491,0,2447 6 29912326 rs1059846 G A 2096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=1.573;SOR=0.73 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,58:160:99:0|1:29912326_G_A:2125,0,4102 6 29912333 rs3179982 C T 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.004;SOR=0.668 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,58:159:99:0|1:29912326_G_A:2128,0,4088 6 29912345 rs3180278 A T 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.733;SOR=0.569 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,52:152:99:0|1:29912326_G_A:1921,0,4081 6 29912348 rs1137078 A G 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-1.017;SOR=0.554 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,52:153:99:0|1:29912326_G_A:1879,0,4084 6 29912368 rs1141891 C T 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-3.629;SOR=0.703 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,47:140:99:0|1:29912326_G_A:1694,0,3764 6 29912373 rs1137110 T G 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.414;QD=12.18;ReadPosRankSum=-3.688;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,46:140:99:0|1:29912326_G_A:1733,0,3803 6 29912395 . T TGG 894.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=1.96;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.732;QD=8.77;ReadPosRankSum=-2.954;SOR=0.981 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,25:102:99:0|1:29912326_G_A:932,0,3317 6 29912398 rs9260191 A T 705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.653;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=7.289;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.933;QD=7.67;ReadPosRankSum=-2.335;SOR=1.623 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,19:92:99:0|1:29912326_G_A:734,0,3164 6 29912405 rs9260192 G A 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-2.975;QD=5.68;ReadPosRankSum=-1.546;SOR=1.121 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,16:87:99:0|1:29912326_G_A:522,0,3053 6 29912410 rs41551619 G A 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.13;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.5;MQ=59.55;MQRankSum=3.743;QD=22.24;ReadPosRankSum=1.527;SOR=0.354 GT:AD:DP:GQ:PL 0/1:14,63:77:99:1741,0,483 6 29912413 rs45610038 TG T 347.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.5;MQ=59.55;MQRankSum=-3.674;QD=4.58;ReadPosRankSum=-1.542;SOR=1.146 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,14:76:99:0|1:29912326_G_A:385,0,2634 6 29912830 rs2571381 T C 3583.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.5;QD=36.95;SOR=1.337 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3612,291,0 6 29912852 rs1137296 T C 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.722;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.613;MLEAC=1;MLEAF=0.5;MQ=56.33;MQRankSum=-6.401;QD=17.2;ReadPosRankSum=1.553;SOR=1.018 GT:AD:DP:GQ:PGT:PID:PL 0/1:56,46:102:99:0|1:29912852_T_C:1783,0,2229 6 29912856 rs2231119 A T 1751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.116;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.56;MLEAC=1;MLEAF=0.5;MQ=56.17;MQRankSum=-6.731;QD=16.68;ReadPosRankSum=1.282;SOR=0.859 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,47:105:99:0|1:29912852_T_C:1780,0,2261 6 29913001 rs2735101 T C 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.819;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=-2.081;QD=9.97;ReadPosRankSum=-0.684;SOR=1.048 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,44:107:99:0|1:29912925_A_G:1095,0,1570 6 29913037 rs1137631 G A 820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=1.375;SOR=0.889 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,38:99:99:0|1:29912925_A_G:849,0,1647 6 29913042 rs14288 C T 4381.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.61;SOR=0.78 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,94:94:99:1|1:29912925_A_G:4410,295,0 6 29913067 rs3823342 T C 692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.794;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=-0.302;SOR=0.677 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,31:81:99:0|1:29912925_A_G:721,0,1263 6 29913074 rs9260205 A G 3481.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.22;SOR=0.948 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,77:77:99:1|1:29912925_A_G:3510,235,0 6 29913078 rs41546815 A G 3461.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.55;SOR=0.92 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,76:76:99:1|1:29912925_A_G:3490,235,0 6 30030114 rs9261269 A G 771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.324;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=-0.868;SOR=0.503 GT:AD:DP:GQ:PL 0/1:57,40:97:99:800,0,1252 6 30041036 rs62390181 G A 882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=2.219;SOR=0.745 GT:AD:DP:GQ:PL 0/1:39,38:77:99:911,0,1129 6 30075843 rs3132679 T C 3197.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3226,338,0 6 30075864 rs2023472 A G 1259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.93;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=1.31;SOR=0.961 GT:AD:DP:GQ:PL 0/1:65,61:126:99:1288,0,1475 6 30078275 rs2523989 C T 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.94;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-2.022;SOR=0.499 GT:AD:DP:GQ:PL 0/1:91,72:163:99:1668,0,2419 6 30078330 rs2239529 C T 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=1.437;SOR=0.702 GT:AD:DP:GQ:PL 0/1:106,87:193:99:1977,0,2563 6 30080274 rs2517598 G A 2207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.3;SOR=0.832 GT:AD:DP:GQ:PL 0/1:113,93:206:99:2236,0,2926 6 30080496 rs2844793 G A 3276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=0.123;SOR=0.688 GT:AD:DP:GQ:PL 0/1:91,136:227:99:3305,0,2112 6 30122154 rs3094134 T C 9928.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9957,932,0 6 30131546 rs17194460 A G 7197.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7226,699,0 6 30131585 rs17194467 G A 2811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=3.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=1.447;SOR=0.89 GT:AD:DP:GQ:PL 0/1:153,117:270:99:2840,0,3916 6 30136302 rs34823152 C G 1401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.117;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-2.564;SOR=0.967 GT:AD:DP:GQ:PL 0/1:76,56:132:99:1430,0,2005 6 30154351 rs61285697 A G 758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.34;ReadPosRankSum=2.319;SOR=0.912 GT:AD:DP:GQ:PL 0/1:115,60:175:99:787,0,2982 6 30297529 rs2057727 T C 10720.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=1.264 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10749,1029,0 6 30309508 rs2074474 T C 4156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.437;SOR=0.886 GT:AD:DP:GQ:PL 0/1:184,176:360:99:4185,0,4480 6 30313227 rs5030611 G A 3687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.142;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.636;SOR=0.62 GT:AD:DP:GQ:PL 0/1:174,165:339:99:3716,0,4496 6 30314566 rs1060065 T G 3379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=1.777;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,92:226:99:0|1:30314566_T_G:3408,0,6407 6 30314567 rs974963 C A 3379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.185;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.22;ReadPosRankSum=2.098;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:132,90:222:99:0|1:30314566_T_G:3408,0,6407 6 30314607 rs974962 A G 1399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-2.113;SOR=0.654 GT:AD:DP:GQ:PL 0/1:92,60:152:99:1428,0,2308 6 30457732 rs1059510 T C 7111.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.71;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,211:211:99:7140,633,0 6 30458064 rs1264457 G A 5563.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=31.61;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5592,528,0 6 30521137 rs2074505 G A 2664.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.275 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2693,252,0 6 30530245 rs2074504 T C 2825.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2854,300,0 6 30558477 . G GA 7648.73 PASS AC=2;AF=1;AN=2;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.13;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,206:206:99:7686,620,0 6 30575603 rs1264420 A G 2671.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2700,290,0 6 30624155 . T C 1950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DP=159;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=1.195;SOR=0.851 GT:AD:DP:GQ:PL 0/1:79,80:159:99:1979,0,1931 6 30672326 rs17292678 T C 6620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.285;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=0.787;QD=16.27;ReadPosRankSum=-1.096;SOR=0.642 GT:AD:DP:GQ:PGT:PID:PL 0/1:227,180:407:99:0|1:30672326_T_C:6649,0,11402 6 30672342 rs3130645 A G 6581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.885;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=0.782;QD=15.86;ReadPosRankSum=-0.727;SOR=0.708 GT:AD:DP:GQ:PGT:PID:PL 0/1:232,183:415:99:0|1:30672326_T_C:6610,0,11386 6 30680111 rs58344693 T C 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.013;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-2.156;SOR=0.654 GT:AD:DP:GQ:PL 0/1:95,93:188:99:2487,0,2362 6 30680252 rs61733210 T C 3076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.78;ReadPosRankSum=0.595;SOR=0.602 GT:AD:DP:GQ:PL 0/1:80,115:195:99:3105,0,1907 6 30680916 rs9262152 C T 2346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.55;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=1.127;SOR=0.661 GT:AD:DP:GQ:PL 0/1:111,95:206:99:2375,0,2650 6 30711805 rs3094124 C G 7542.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.939 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7571,728,0 6 30857072 rs2229933 G C 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=-1.289;SOR=0.705 GT:AD:DP:GQ:PL 0/1:131,85:216:99:1809,0,3146 6 30858731 . CCT C 1054.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.194;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=20.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=-1.174;SOR=2.093 GT:AD:DP:GQ:PL 0/1:68,53:121:99:1092,0,2519 6 30858857 rs1049622 C T 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-1.837;SOR=0.769 GT:AD:DP:GQ:PL 0/1:111,93:204:99:2115,0,2777 6 30862423 rs1264319 C T 2172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.331;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=2.563;SOR=0.686 GT:AD:DP:GQ:PL 0/1:140,93:233:99:2201,0,3386 6 30864829 rs1049623 T C 5667.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.34;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5696,510,0 6 30865204 rs2267641 A C 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-2.125;SOR=0.534 GT:AD:DP:GQ:PL 0/1:94,103:197:99:2439,0,2179 6 30865279 rs116772905 C T 2498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.362;SOR=0.677 GT:AD:DP:GQ:PL 0/1:114,113:227:99:2527,0,2704 6 30866929 rs115029731 G A 2126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.019;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.14;SOR=0.75 GT:AD:DP:GQ:PL 0/1:99,89:188:99:2155,0,2798 6 30877202 rs916920 T C 1045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.245;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.01;ReadPosRankSum=0.473;SOR=0.793 GT:AD:DP:GQ:PL 0/1:17,38:55:99:1074,0,358 6 30877760 rs1419693 A C 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=0.85;SOR=0.536 GT:AD:DP:GQ:PL 0/1:97,76:173:99:1686,0,2164 6 30878523 rs61748588 C A 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=8.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=1.138;SOR=0.502 GT:AD:DP:GQ:PL 0/1:51,62:113:99:1491,0,1228 6 30878919 rs2074512 T C 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.996;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-1.191;SOR=0.595 GT:AD:DP:GQ:PL 0/1:33,38:71:99:805,0,775 6 30882203 rs1264306 T C 2685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.945;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.506;SOR=0.806 GT:AD:DP:GQ:PL 0/1:101,112:213:99:2714,0,2282 6 30882689 rs6926224 C T 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.206;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=-2.877;SOR=0.668 GT:AD:DP:GQ:PL 0/1:121,76:197:99:1768,0,3037 6 30882803 rs6926723 G A 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.74;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=7.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=2.818;SOR=0.462 GT:AD:DP:GQ:PL 0/1:95,86:181:99:2113,0,2594 6 30887972 rs2285319 C T 2732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.841;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.32;SOR=0.651 GT:AD:DP:GQ:PL 0/1:130,108:238:99:2761,0,3285 6 30888161 rs2249464 T C 2775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-0.897;SOR=0.637 GT:AD:DP:GQ:PL 0/1:113,116:229:99:2804,0,2885 6 30889389 rs2074511 T C 2147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.621;SOR=0.757 GT:AD:DP:GQ:PL 0/1:85,95:180:99:2176,0,1827 6 30890871 rs753725 T C 2494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.407;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.15;SOR=0.617 GT:AD:DP:GQ:PL 0/1:97,91:188:99:2523,0,2483 6 30893127 rs9394021 G A 2375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.945;QD=12.44;ReadPosRankSum=-0.253;SOR=0.536 GT:AD:DP:GQ:PL 0/1:89,102:191:99:2404,0,2238 6 30893728 rs1043483 C T 3214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.093;SOR=0.758 GT:AD:DP:GQ:PL 0/1:144,134:278:99:3243,0,3557 6 30899571 rs2286656 C T 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=0.644;SOR=0.409 GT:AD:DP:GQ:PL 0/1:75,46:121:99:1053,0,1928 6 30917212 rs3095149 T C 24834.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0;DB;DP=809;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;MQRankSum=-0.08;QD=30.74;ReadPosRankSum=1.109;SOR=0.249 GT:AD:DP:GQ:PL 1/1:1,807:808:99:24863,2379,0 6 30918441 rs111658797 A G 9972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0;DB;DP=815;ExcessHet=3.0103;FS=1.73;MLEAC=1;MLEAF=0.5;MQ=58.8;MQRankSum=0.762;QD=12.28;ReadPosRankSum=0.433;SOR=0.755 GT:AD:DP:GQ:PL 0/1:391,421:812:99:10001,0,9334 6 30920086 rs79792575 C T 2585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.585;SOR=0.688 GT:AD:DP:GQ:PL 0/1:120,105:225:99:2614,0,3156 6 30993377 rs3094672 T A 5872.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5901,553,0 6 30993440 rs115194949 G A 2308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.101;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-2.126;SOR=0.85 GT:AD:DP:GQ:PL 0/1:107,91:198:99:2337,0,3638 6 30993499 rs2517554 C T 2667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.76;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.994;SOR=0.584 GT:AD:DP:GQ:PL 0/1:114,109:223:99:2696,0,3719 6 30993533 rs2523898 A G 9253.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.46;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,247:247:99:9282,744,0 6 30993590 rs12179536 A G 2828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.63;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.054;SOR=0.72 GT:AD:DP:GQ:PL 0/1:133,111:244:99:2857,0,3318 6 30993958 rs2523897 A G 8972.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,284:284:99:9001,851,0 6 30994052 rs72847018 A T 4384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.063;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=-2.037;SOR=0.754 GT:AD:DP:GQ:PL 0/1:144,173:317:99:4413,0,3848 6 30994327 rs114550954 C T 3558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.671;SOR=0.855 GT:AD:DP:GQ:PL 0/1:188,144:332:99:3587,0,5200 6 30994759 rs34632463 A C 2791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=0.156;SOR=0.869 GT:AD:DP:GQ:PL 0/1:97,107:204:99:2820,0,2431 6 30997692 rs9262549 G C 9808.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=33.14;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,296:296:99:9837,888,0 6 30999997 rs10947121 T C 2427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.644;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=7.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.088;SOR=0.359 GT:AD:DP:GQ:PL 0/1:98,112:210:99:2456,0,2444 6 31002452 rs3869098 A G 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.362;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.244;SOR=0.814 GT:AD:DP:GQ:PL 0/1:69,47:116:99:1215,0,1877 6 31002527 rs4248153 A G 2646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.064;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-0.551;SOR=0.722 GT:AD:DP:GQ:PL 0/1:123,107:230:99:2675,0,2993 6 31002616 rs4248154 C T 3017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.599;SOR=0.657 GT:AD:DP:GQ:PL 0/1:140,129:269:99:3046,0,3491 6 31083797 rs369310712 ACTT A 4552.73 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=45.08;SOR=1.431 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,101:101:99:1|1:31083797_ACTT_A:4590,307,0 6 31083813 rs3130981 T C 5133.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=42.78;SOR=1.368 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:31083797_ACTT_A:5162,361,0 6 31084075 rs3130982 G C 5737.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5766,546,0 6 31084163 rs3132554 A G 5430.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.52;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5459,486,0 6 31084288 rs1042126 T C 6882.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6911,677,0 6 31084435 rs1062470 G A 3876.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3905,385,0 6 31084684 rs3094215 G A 7093.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7122,693,0 6 31084787 rs707913 A G 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.047;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=-0.405;SOR=0.745 GT:AD:DP:GQ:PL 0/1:91,85:176:99:2433,0,2195 6 31084792 rs3130983 C T 6567.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.53;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,175:175:99:6596,529,0 6 31084964 . T C 6816.77 PASS AC=2;AF=1;AN=2;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6845,637,0 6 31085200 . A G 6220.77 PASS AC=2;AF=1;AN=2;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6249,606,0 6 31085269 . A G 5612.77 PASS AC=2;AF=1;AN=2;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=1.3 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5641,555,0 6 31088202 . A G 2753.77 PASS AC=2;AF=1;AN=2;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2782,273,0 6 31105891 rs2233952 A G 5245.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5274,519,0 6 31106499 rs9263726 G A 3062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.773;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=0.132;SOR=0.635 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,85:207:99:0|1:31106499_G_A:3091,0,6344 6 31106500 . TC T 3053.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.942;ClippingRankSum=0;DP=209;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=0.065;SOR=0.621 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,85:208:99:0|1:31106499_G_A:3091,0,6344 6 31107648 rs1063646 C T 2338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=0.905;SOR=0.804 GT:AD:DP:GQ:PL 0/1:104,99:203:99:2367,0,2588 6 31107723 rs370474867 AC A 1548.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.17;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=-1.29;SOR=0.788 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1586,0,1595 6 31110786 rs12364 T A 2061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.127;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.252;SOR=0.912 GT:AD:DP:GQ:PL 0/1:91,90:181:99:2090,0,2166 6 31111180 rs130073 T C 2133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.193;SOR=0.56 GT:AD:DP:GQ:PL 0/1:105,94:199:99:2162,0,2465 6 31112925 rs2073719 C T 2102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=3.069;SOR=0.609 GT:AD:DP:GQ:PL 0/1:102,86:188:99:2131,0,2740 6 31113030 rs3132539 A G 2533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.984;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.868;SOR=0.695 GT:AD:DP:GQ:PL 0/1:131,102:233:99:2562,0,2857 6 31113052 rs3094225 G A 2117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=1.825;SOR=0.658 GT:AD:DP:GQ:PL 0/1:128,90:218:99:2146,0,3147 6 31113275 rs886401 A G 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.36;ReadPosRankSum=-1.712;SOR=0.651 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,46:107:99:0|1:31113275_A_G:1672,0,2693 6 31113276 . G A 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.65;ReadPosRankSum=-1.636;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,45:105:99:0|1:31113275_A_G:1672,0,2693 6 31116220 rs130070 G A 811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.12;ReadPosRankSum=-0.667;SOR=0.526 GT:AD:DP:GQ:PL 0/1:59,41:100:99:840,0,1375 6 31118565 rs130078 C G 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.42;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.536;SOR=0.596 GT:AD:DP:GQ:PL 0/1:92,97:189:99:2359,0,2353 6 31122330 rs130077 G A 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=2.209;SOR=0.701 GT:AD:DP:GQ:PL 0/1:85,54:139:99:1172,0,2148 6 31129616 rs2073721 A G 4957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.467;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=0.228;SOR=0.67 GT:AD:DP:GQ:PL 0/1:170,186:356:99:4986,0,4040 6 31129642 rs2073722 A C 4706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.664;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=2.373;SOR=0.7 GT:AD:DP:GQ:PL 0/1:171,190:361:99:4735,0,3846 6 31130502 rs1065461 T C 3481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.54;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=1.17;SOR=0.591 GT:AD:DP:GQ:PL 0/1:128,133:261:99:3510,0,3075 6 31132414 rs1061118 G A 3109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.799;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.5;MQ=47.86;MQRankSum=0.215;QD=14.53;ReadPosRankSum=-0.541;SOR=0.468 GT:AD:DP:GQ:PL 0/1:104,110:214:99:3138,0,2729 6 31132649 rs2394882 A C 4150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.448;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-3.437;QD=13.74;ReadPosRankSum=-0.074;SOR=0.757 GT:AD:DP:GQ:PL 0/1:135,167:302:99:4179,0,3195 6 31237124 rs1130838 T C 4242.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4271,396,0 6 31237162 rs35708511 C G 4775.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4804,456,0 6 31237255 rs2523609 G A 4903.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=28.85;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4932,509,0 6 31237723 rs9264610 G A 2030.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.33;QD=44.15;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:31237723_G_A:2059,138,0 6 31237727 rs2074497 T C 2020.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.33;QD=43.93;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:31237723_G_A:2049,138,0 6 31237767 rs1130935 T C 3346.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.53;QD=45.23;SOR=1.061 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,74:74:99:1|1:31237767_T_C:3375,226,0 6 31237769 rs1050105 G A 3346.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.54;QD=44.62;SOR=1.091 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:31237767_T_C:3375,226,0 6 31237771 rs1050106 G A 3391.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.54;QD=45.22;SOR=1.091 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:31237767_T_C:3420,229,0 6 31237773 rs1130947 T C 3526.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.54;QD=47.02;SOR=1.164 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:31237767_T_C:3555,238,0 6 31237774 rs41540512 G C 3616.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.54;QD=48.22;SOR=1.164 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:31237767_T_C:3645,244,0 6 31237776 rs1050118 C T 939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-0.137;QD=11.75;ReadPosRankSum=0.111;SOR=0.97 GT:AD:DP:GQ:PL 0/1:43,37:80:99:968,0,1113 6 31237786 rs41556617 A T 3760.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.83;QD=46.43;SOR=0.934 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:31237767_T_C:3789,259,0 6 31237802 rs1050147 A G 3620.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=44.16;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,82:82:99:1|1:31237767_T_C:3649,253,0 6 31237833 rs1050180 T C 3759.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=37.6;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3788,304,0 6 31237858 rs34794906 T C 1373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.759;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-0.858;QD=12.49;ReadPosRankSum=1.301;SOR=0.562 GT:AD:DP:GQ:PL 0/1:55,55:110:99:1402,0,1252 6 31237876 rs9264622 A G 3994.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.62;QD=37.69;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:4023,319,0 6 31237971 rs9264628 C T 2806.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.53;QD=50.12;SOR=1.009 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,56:56:99:1|1:31237931_CAGA_C:2835,190,0 6 31237975 rs9264629 T C 2761.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.33;QD=48.45;SOR=1.342 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,57:57:99:1|1:31237931_CAGA_C:2790,187,0 6 31237991 rs2308628 G T 3031.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.92;QD=45.25;SOR=2.07 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,67:67:99:1|1:31237931_CAGA_C:3060,205,0 6 31238009 rs1131014 T C 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.74;MQRankSum=-4.058;QD=7.71;ReadPosRankSum=-0.385;SOR=0.558 GT:AD:DP:GQ:PL 0/1:51,22:73:99:591,0,1527 6 31238010 rs1131015 T G 3436.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.51;QD=45.22;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,76:76:99:1|1:31237931_CAGA_C:3465,232,0 6 31238029 rs2308622 T C 4020.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.79;QD=45.69;SOR=1.531 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,88:88:99:1|1:31237931_CAGA_C:4049,271,0 6 31238053 rs707908 G C 4140.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.16;QD=44.05;SOR=1.265 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,94:94:99:1|1:31237931_CAGA_C:4169,289,0 6 31238126 rs2308618 G A 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.567;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.09;MQRankSum=-2.237;QD=10.2;ReadPosRankSum=1.897;SOR=0.733 GT:AD:DP:GQ:PL 0/1:93,62:155:99:1609,0,2437 6 31238135 rs1050317 G A 6982.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.34;QD=45.94;SOR=1.127 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,152:152:99:1|1:31238135_G_A:7011,473,0 6 31238138 rs1050320 C T 7254.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.88;QD=46.21;SOR=1.026 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,157:157:99:1|1:31238135_G_A:7283,497,0 6 31238147 rs1050326 C G 3095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.313;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.5;MQ=45.28;MQRankSum=-0.375;QD=16.92;ReadPosRankSum=-0.972;SOR=0.531 GT:AD:DP:GQ:PL 0/1:71,112:183:99:3124,0,2635 6 31238155 rs1050328 G A 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.693;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=46.71;MQRankSum=0.911;QD=8.3;ReadPosRankSum=-0.375;SOR=0.757 GT:AD:DP:GQ:PL 0/1:119,77:196:99:1656,0,4662 6 31238230 rs1050716 G C 9635.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.68;QD=44.4;SOR=0.971 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,217:217:99:1|1:31238230_G_C:9664,656,0 6 31238234 rs1050344 G A 9540.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.91;QD=44.79;SOR=0.977 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,213:213:99:1|1:31238230_G_C:9569,647,0 6 31238259 rs1131096 G T 6114.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.79;QD=30.12;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6143,609,0 6 31238851 rs2308604 T C 18894.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.893;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.49;MQRankSum=1.979;QD=47.12;ReadPosRankSum=-1.083;SOR=0.423 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,400:401:99:1|1:31238851_T_C:18923,1261,0 6 31238875 rs1131104 G A 3724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DB;DP=477;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.5;MQ=55.83;MQRankSum=-1.327;QD=7.81;ReadPosRankSum=0.029;SOR=0.591 GT:AD:DP:GQ:PGT:PID:PL 0/1:355,122:477:99:0|1:31238851_T_C:3753,0,14536 6 31238880 rs1050357 C T 3709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0;DB;DP=477;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.5;MQ=55.67;MQRankSum=-1.338;QD=7.78;ReadPosRankSum=-0.144;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:359,118:477:99:0|1:31238851_T_C:3738,0,14702 6 31238897 rs150127748 C G 886.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.129;ClippingRankSum=0;DB;DP=472;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.5;MQ=54.74;MQRankSum=-2.311;QD=1.88;ReadPosRankSum=3.995;SOR=0.924 GT:AD:DP:GQ:PGT:PID:PL 0/1:390,81:471:99:0|1:31238851_T_C:915,0,15728 6 31238909 rs1050686 G A 6717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.354;ClippingRankSum=0;DB;DP=455;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.5;MQ=53.81;MQRankSum=-3.717;QD=14.76;ReadPosRankSum=2.084;SOR=0.615 GT:AD:DP:GQ:PGT:PID:PL 0/1:271,184:455:99:0|1:31238851_T_C:6746,0,10745 6 31238910 rs1050685 T G 6756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.701;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=53.77;MQRankSum=-3.609;QD=14.95;ReadPosRankSum=1.927;SOR=0.634 GT:AD:DP:GQ:PGT:PID:PL 0/1:268,184:452:99:0|1:31238851_T_C:6785,0,10769 6 31238928 . TCA T 2784.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.51;ClippingRankSum=0;DP=435;ExcessHet=3.0103;FS=7.921;MLEAC=1;MLEAF=0.5;MQ=51.99;MQRankSum=-0.016;QD=6.4;ReadPosRankSum=2.714;SOR=0.924 GT:AD:DP:GQ:PGT:PID:PL 0/1:343,92:435:99:0|1:31238851_T_C:2822,0,14238 6 31238930 rs79636386 A C 3768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.402;ClippingRankSum=0;DB;DP=428;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.5;MQ=51.84;MQRankSum=-2.177;QD=8.81;ReadPosRankSum=-5.147;SOR=0.815 GT:AD:DP:GQ:PGT:PID:PL 0/1:311,117:428:99:0|1:31238851_T_C:3797,0,12788 6 31238931 rs697743 G A 4045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.764;ClippingRankSum=0;DB;DP=419;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.5;MQ=51.61;MQRankSum=-2.434;QD=12.37;ReadPosRankSum=-1.654;SOR=0.539 GT:AD:DP:GQ:PL 0/1:219,108:419:99:4074,0,8925 6 31238942 rs2308590 G T,A 18093.8 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=51.06;QD=43.08;SOR=0.879 GT:AD:DP:GQ:PL 1/2:0,315,105:420:99:18122,4297,3280,13368,0,13083 6 31238957 rs1050366 A C 19466.8 PASS AC=2;AF=1;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.93;QD=45.7;SOR=0.865 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,426:426:99:1|1:31238851_T_C:19495,1306,0 6 31238983 rs2308585 G C 6335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.775;ClippingRankSum=0;DB;DP=389;ExcessHet=3.0103;FS=8.129;MLEAC=1;MLEAF=0.5;MQ=49.97;MQRankSum=-6.312;QD=16.29;ReadPosRankSum=0.772;SOR=1.026 GT:AD:DP:GQ:PGT:PID:PL 0/1:207,182:389:99:0|1:31238851_T_C:6364,0,7694 6 31238992 rs41550715 G C 7436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.485;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=4.655;MLEAC=1;MLEAF=0.5;MQ=49.61;MQRankSum=5.022;QD=20.26;ReadPosRankSum=-1.171;SOR=0.511 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,187:367:99:0|1:31238851_T_C:7465,0,7068 6 31239006 rs76907552 G T 5892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.065;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.35;MQRankSum=2.595;QD=17.97;ReadPosRankSum=-1.525;SOR=0.696 GT:AD:DP:GQ:PGT:PID:PL 0/1:171,157:328:99:0|1:31238851_T_C:5921,0,6710 6 31239010 rs1050371 G A 591.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.295;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.65;MQRankSum=-5.676;QD=1.81;ReadPosRankSum=-0.249;SOR=0.667 GT:AD:DP:GQ:PGT:PID:PL 0/1:282,45:327:99:0|1:31238851_T_C:620,0,10287 6 31239049 rs1065406 G T 4409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.389;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=9.415;MLEAC=1;MLEAF=0.5;MQ=52.11;MQRankSum=-0.45;QD=14.85;ReadPosRankSum=0.796;SOR=1.16 GT:AD:DP:GQ:PL 0/1:183,114:297:99:4438,0,7446 6 31239050 rs713032 G A 4434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=10.169;MLEAC=1;MLEAF=0.5;MQ=52.36;MQRankSum=-4.609;QD=17.74;ReadPosRankSum=-0.034;SOR=1.179 GT:AD:DP:GQ:PL 0/1:132,118:301:99:4463,0,5841 6 31239057 rs2308575 C T 4372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.436;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=10.417;MLEAC=1;MLEAF=0.5;MQ=52.53;MQRankSum=-0.436;QD=14.34;ReadPosRankSum=0.397;SOR=1.201 GT:AD:DP:GQ:PL 0/1:189,116:305:99:4401,0,7518 6 31239060 rs2308574 A G 43.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.272;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=51.145;MLEAC=1;MLEAF=0.5;MQ=52.82;MQRankSum=-5.9;QD=0.15;ReadPosRankSum=-2.636;SOR=5.738 GT:AD:DP:GQ:PL 0/1:277,23:300:72:72,0,11521 6 31239090 rs34592426 G C 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=55.26;MQRankSum=-8.152;QD=5.9;ReadPosRankSum=1.925;SOR=0.446 GT:AD:DP:GQ:PL 0/1:218,55:273:99:1640,0,8392 6 31239101 rs1131115 G T 11719.8 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.42;QD=44.56;SOR=1.538 GT:AD:DP:GQ:PL 1/1:0,263:263:99:11748,801,0 6 31239108 rs1131118 T A 4178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.19;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.5;MQ=55.62;MQRankSum=7.196;QD=17.48;ReadPosRankSum=-1.326;SOR=0.5 GT:AD:DP:GQ:PL 0/1:127,112:239:99:4207,0,5051 6 31239111 . G GCC 2439.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.863;ClippingRankSum=0;DP=236;ExcessHet=3.0103;FS=5.582;MLEAC=1;MLEAF=0.5;MQ=55.62;MQRankSum=-1.349;QD=10.34;ReadPosRankSum=-0.097;SOR=1.103 GT:AD:DP:GQ:PL 0/1:164,72:236:99:2477,0,6733 6 31239112 rs201441823 G A 2457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.5;MQ=55.57;MQRankSum=-1.383;QD=10.69;ReadPosRankSum=-0.153;SOR=1.16 GT:AD:DP:GQ:PL 0/1:162,68:230:99:2486,0,6659 6 31239113 . AGG A 2442.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.562;ClippingRankSum=0;DP=220;ExcessHet=3.0103;FS=6.062;MLEAC=1;MLEAF=0.5;MQ=55.45;MQRankSum=-1.224;QD=11.1;ReadPosRankSum=-0.357;SOR=1.203 GT:AD:DP:GQ:PL 0/1:155,65:220:99:2480,0,6755 6 31239114 rs1071649 G T 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.056;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.167;MLEAC=1;MLEAF=0.5;MQ=55.51;MQRankSum=-6.505;QD=7.99;ReadPosRankSum=0.511;SOR=0.448 GT:AD:DP:GQ:PL 0/1:166,53:219:99:1777,0,7267 6 31239116 rs1131119 G A 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.022;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=55.64;MQRankSum=-6.51;QD=7.99;ReadPosRankSum=0.595;SOR=0.57 GT:AD:DP:GQ:PL 0/1:165,52:217:99:1762,0,6886 6 31239133 rs200646093 C A 963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.007;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.804;MLEAC=1;MLEAF=0.5;MQ=56.08;MQRankSum=0.315;QD=5.35;ReadPosRankSum=-2.495;SOR=1.082 GT:AD:DP:GQ:PL 0/1:138,42:180:99:992,0,5801 6 31239135 rs72558146 C G 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.703;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=6.277;MLEAC=1;MLEAF=0.5;MQ=56.08;MQRankSum=-1.535;QD=9.03;ReadPosRankSum=-1.574;SOR=1.339 GT:AD:DP:GQ:PL 0/1:133,47:180:99:1654,0,5444 6 31239141 rs9264661 C T 2308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.065;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=4.258;MLEAC=1;MLEAF=0.5;MQ=56.04;MQRankSum=6.637;QD=13.5;ReadPosRankSum=1.586;SOR=0.422 GT:AD:DP:GQ:PL 0/1:90,81:171:99:2337,0,3723 6 31239376 rs1131122 C T 5176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=4.849;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-2.979;QD=18.82;ReadPosRankSum=-0.37;SOR=0.976 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,132:275:99:0|1:31239227_C_T:5205,0,5592 6 31239378 rs1131123 T G 5176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.562;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-2.935;QD=18.55;ReadPosRankSum=-0.9;SOR=0.887 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,136:279:99:0|1:31239227_C_T:5205,0,5592 6 31239407 rs17408553 G T 5481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=2.399;QD=18.46;ReadPosRankSum=1.985;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,144:297:99:0|1:31239227_C_T:5510,0,5894 6 31239417 rs2308557 C T 5675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=2.472;QD=18.31;ReadPosRankSum=0.569;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 0/1:155,155:310:99:0|1:31239227_C_T:5704,0,6190 6 31239430 rs41543814 C T 5339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-7.125;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-2.557;QD=16.18;ReadPosRankSum=1.019;SOR=0.509 GT:AD:DP:GQ:PGT:PID:PL 0/1:171,159:330:99:0|1:31239227_C_T:5368,0,6492 6 31239506 rs1050414 C G 6183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0;DB;DP=464;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=3.45;QD=13.36;ReadPosRankSum=1.605;SOR=0.549 GT:AD:DP:GQ:PL 0/1:225,238:463:99:6212,0,6216 6 31239577 rs707911 A C 9806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.639;ClippingRankSum=0;DB;DP=505;ExcessHet=3.0103;FS=5.89;MLEAC=1;MLEAF=0.5;MQ=58.55;MQRankSum=-12.111;QD=19.42;ReadPosRankSum=-0.273;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 0/1:248,257:505:99:0|1:31239577_A_C:9835,0,9533 6 31239585 rs1050437 C T 5951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0;DB;DP=499;ExcessHet=3.0103;FS=4.894;MLEAC=1;MLEAF=0.5;MQ=58.53;MQRankSum=-10.878;QD=12;ReadPosRankSum=1.144;SOR=0.8 GT:AD:DP:GQ:PL 0/1:253,243:496:99:5980,0,10158 6 31239593 rs41542719 T C 10310.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0;DB;DP=500;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=58.43;MQRankSum=-12.096;QD=20.62;ReadPosRankSum=0.792;SOR=0.811 GT:AD:DP:GQ:PGT:PID:PL 0/1:241,259:500:99:0|1:31239577_A_C:10339,0,9815 6 31239614 rs1050444 G A 9900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0;DB;DP=481;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.5;MQ=58.37;MQRankSum=-9.265;QD=20.58;ReadPosRankSum=0.234;SOR=0.54 GT:AD:DP:GQ:PL 0/1:229,252:481:99:9929,0,9065 6 31239622 rs9264668 C A 9851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.993;ClippingRankSum=0;DB;DP=466;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=58.41;MQRankSum=-11.511;QD=21.42;ReadPosRankSum=1.626;SOR=0.616 GT:AD:DP:GQ:PL 0/1:214,246:465:99:9880,0,8323 6 31239776 rs2074493 A C 3784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.358;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.315;QD=14.07;ReadPosRankSum=1.283;SOR=0.575 GT:AD:DP:GQ:PGT:PID:PL 0/1:125,144:269:99:0|1:31239681_A_T:3813,0,3419 6 31239802 rs1050451 C G 11041.8 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.92;QD=45.63;SOR=1.448 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,242:242:99:1|1:31239681_A_T:11070,741,0 6 31239821 rs2308527 G T 10411.8 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=46.27;SOR=1.447 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,225:225:99:1|1:31239681_A_T:10440,698,0 6 31239827 rs2308525 C T 10006.8 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=45.49;SOR=1.453 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,220:220:99:1|1:31239681_A_T:10035,671,0 6 31239855 rs7767581 C G 7534.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=41.86;SOR=1.89 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,180:180:99:1|1:31239681_A_T:7563,542,0 6 31239868 rs9264674 G C 6154.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=45.59;SOR=1.929 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,135:135:99:1|1:31239681_A_T:6183,415,0 6 31322303 rs2308655 C G 2966.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.96;SOR=1.662 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2995,270,0 6 31322888 rs1140546 A G 3314.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3343,325,0 6 31322911 rs1051488 C T 3949.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=29.48;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3978,400,0 6 31322980 rs1131500 C T 4672.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=42.48;SOR=1.022 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,110:110:99:1|1:31322980_C_T:4701,334,0 6 31322996 rs2074496 C T 4579.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=44.9;SOR=1.103 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,102:102:99:1|1:31322980_C_T:4608,310,0 6 31323020 rs2276448 T C 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.852;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.92;QD=14.72;ReadPosRankSum=-1.091;SOR=0.648 GT:AD:DP:GQ:PL 0/1:53,65:118:99:1765,0,1328 6 31323128 rs41551014 A G 53.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.297;MLEAC=1;MLEAF=0.5;MQ=58.99;MQRankSum=-11.162;QD=0.31;ReadPosRankSum=1.843;SOR=0.441 GT:AD:DP:GQ:PGT:PID:PL 0/1:162,14:176:82:0|1:31323128_A_G:82,0,6965 6 31323134 rs1050240 T C 173.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.5;MQ=58.65;MQRankSum=-11.753;QD=0.95;ReadPosRankSum=1.104;SOR=0.586 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,17:183:99:0|1:31323128_A_G:202,0,7061 6 31323143 rs41546016 T C 221.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=7.799;MLEAC=1;MLEAF=0.5;MQ=58.4;MQRankSum=-12.661;QD=1.1;ReadPosRankSum=0.713;SOR=1.119 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,21:201:99:0|1:31323128_A_G:250,0,7402 6 31323202 rs41545916 T C 321.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=14.402;MLEAC=1;MLEAF=0.5;MQ=57.68;MQRankSum=-15.854;QD=1.18;ReadPosRankSum=0.327;SOR=0.761 GT:AD:DP:GQ:PL 0/1:240,33:273:99:350,0,7095 6 31323215 rs41541216 T C 243.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.715;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=24.042;MLEAC=1;MLEAF=0.5;MQ=57.82;MQRankSum=-16.759;QD=0.83;ReadPosRankSum=0.389;SOR=1.32 GT:AD:DP:GQ:PL 0/1:262,32:294:99:272,0,7530 6 31323233 rs709052 A G 4626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.103;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=7.424;MLEAC=1;MLEAF=0.5;MQ=58.04;MQRankSum=0.646;QD=14.06;ReadPosRankSum=-0.479;SOR=1.046 GT:AD:DP:GQ:PL 0/1:145,184:329:99:4655,0,3850 6 31323296 rs1050747 A G 16694.8 PASS AC=2;AF=1;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.77;QD=41.22;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,405:405:99:16723,1236,0 6 31323353 rs2257269 G A 4955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0;DB;DP=392;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=1.637;QD=12.67;ReadPosRankSum=-0.391;SOR=0.868 GT:AD:DP:GQ:PL 0/1:184,207:391:99:4984,0,4576 6 31323945 rs2596493 A C 6389.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.04;QD=44.07;SOR=1.171 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,145:145:99:1|1:31323945_A_C:6418,436,0 6 31323953 rs1131285 C G 6381.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.3;QD=45.26;SOR=1.108 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,141:141:99:1|1:31323945_A_C:6410,430,0 6 31323958 rs1131279 T G 6622.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.78;QD=46.31;SOR=1.063 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,143:143:99:1|1:31323945_A_C:6651,446,0 6 31323960 rs1131275 G C 6622.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.76;QD=45.67;SOR=1.094 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,145:145:99:1|1:31323945_A_C:6651,446,0 6 31323969 rs41547422 G A 396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=15.303;MLEAC=1;MLEAF=0.5;MQ=48.52;MQRankSum=-1.891;QD=2.53;ReadPosRankSum=-2.112;SOR=2.294 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,20:157:99:0|1:31323969_G_A:425,0,5560 6 31323974 rs41545114 C T 372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=18.239;MLEAC=1;MLEAF=0.5;MQ=48.31;MQRankSum=-1.786;QD=2.32;ReadPosRankSum=-0.087;SOR=2.524 GT:AD:DP:GQ:PGT:PID:PL 0/1:141,20:161:99:0|1:31323969_G_A:401,0,5775 6 31323991 rs1050692 C G 1004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.927;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=23.902;MLEAC=1;MLEAF=0.5;MQ=47.12;MQRankSum=0.454;QD=6.36;ReadPosRankSum=0.025;SOR=2.136 GT:AD:DP:GQ:PL 0/1:115,43:158:99:1033,0,4356 6 31324003 rs2308466 T A,G 6594.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=46.48;QD=43.97;SOR=1.171 GT:AD:DP:GQ:PL 1/2:0,72,78:150:99:6623,3488,3340,3125,0,2863 6 31324004 rs2523600 C G,T 6659.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=46.78;QD=43.53;SOR=1.142 GT:AD:DP:GQ:PL 1/2:0,73,80:153:99:6688,3562,3466,3125,0,2854 6 31324022 . TCC T 364.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.611;ClippingRankSum=0;DP=186;ExcessHet=3.0103;FS=51.082;MLEAC=1;MLEAF=0.5;MQ=48.19;MQRankSum=-2.564;QD=1.97;ReadPosRankSum=-1.413;SOR=4.709 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,21:185:99:0|1:31324022_TCC_T:402,0,7068 6 31324024 rs697742 C A 2954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.318;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=20.908;MLEAC=1;MLEAF=0.5;MQ=48.19;MQRankSum=-1.864;QD=15.97;ReadPosRankSum=-1.937;SOR=0.943 GT:AD:DP:GQ:PL 0/1:96,89:185:99:2983,0,3795 6 31324025 rs9266144 G A 2419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.18;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=20.538;MLEAC=1;MLEAF=0.5;MQ=48.45;MQRankSum=1.595;QD=14.4;ReadPosRankSum=2.396;SOR=1.02 GT:AD:DP:GQ:PL 0/1:93,75:189:99:2448,0,3588 6 31324036 rs151341293 T A 37.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.438;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=25.042;MLEAC=1;MLEAF=0.5;MQ=49.28;MQRankSum=-3.14;QD=0.18;ReadPosRankSum=0.432;SOR=3.254 GT:AD:DP:GQ:PGT:PID:PL 0/1:190,16:206:66:0|1:31324022_TCC_T:66,0,7515 6 31324077 rs709053 C G 2546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.211;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.5;MQ=48.21;MQRankSum=-4.591;QD=13.33;ReadPosRankSum=-1.92;SOR=0.495 GT:AD:DP:GQ:PL 0/1:121,70:191:99:2575,0,4819 6 31324086 rs709054 G C 2633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.463;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.5;MQ=48.37;MQRankSum=-4.895;QD=13.86;ReadPosRankSum=0.692;SOR=0.502 GT:AD:DP:GQ:PL 0/1:118,72:190:99:2662,0,4782 6 31324100 rs1050654 G T 2894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.728;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.5;MQ=48.69;MQRankSum=-6.07;QD=15.48;ReadPosRankSum=2.561;SOR=0.615 GT:AD:DP:GQ:PL 0/1:106,81:187:99:2923,0,4249 6 31324104 rs281864624 G A 718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.5;MQ=48.52;MQRankSum=3.208;QD=3.78;ReadPosRankSum=1.131;SOR=0.91 GT:AD:DP:GQ:PL 0/1:140,50:190:99:747,0,4609 6 31324143 rs12697944 G T 3357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.143;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.9;MQRankSum=-4.594;QD=28.7;ReadPosRankSum=6.493;SOR=0.709 GT:AD:DP:GQ:PL 0/1:35,82:117:99:3386,0,1110 6 31324144 rs4997052 T A 3357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.455;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.81;MQRankSum=-4.645;QD=29.45;ReadPosRankSum=6.258;SOR=0.627 GT:AD:DP:GQ:PL 0/1:32,82:114:99:3386,0,1110 6 31324151 rs709055 C T 3373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.5;MQ=46.85;MQRankSum=-4.801;QD=30.12;ReadPosRankSum=6.116;SOR=0.379 GT:AD:DP:GQ:PL 0/1:27,85:112:99:3402,0,999 6 31324184 rs1131112 C G 3121.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.2;QD=47.3;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,66:66:99:3150,211,0 6 31324194 rs3179865 G A 3031.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.01;QD=47.37;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,64:64:99:3060,205,0 6 31324200 rs1140412 G C 2986.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.06;QD=48.17;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:3015,202,0 6 31324201 rs1071652 C G 2986.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.34;QD=47.41;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,63:63:99:3015,202,0 6 31324205 . G GCC 3022.73 PASS AC=2;AF=1;AN=2;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.62;QD=45.8;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:3060,205,0 6 31324206 rs1131235 G A 3031.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.72;QD=46.64;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,65:65:99:3060,205,0 6 31324207 . AGG A 3022.73 PASS AC=2;AF=1;AN=2;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.19;QD=45.8;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,66:66:99:3060,205,0 6 31324516 rs1131215 C A 5144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.343;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-4.496;QD=16.92;ReadPosRankSum=0.532;SOR=0.602 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,138:304:99:0|1:31324516_C_A:5173,0,6581 6 31324524 . GCC G 5211.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.65;ClippingRankSum=0;DP=301;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.5;MQ=59.33;MQRankSum=-4.601;QD=17.31;ReadPosRankSum=-0.58;SOR=0.527 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,138:301:99:0|1:31324516_C_A:5249,0,6881 6 31324528 . G GTT 5161.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DP=298;ExcessHet=3.0103;FS=5.303;MLEAC=1;MLEAF=0.5;MQ=59.21;MQRankSum=-5.004;QD=17.32;ReadPosRankSum=-0.34;SOR=0.619 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,133:298:99:0|1:31324516_C_A:5199,0,6729 6 31324531 rs1131204 C T 5005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=5.31;MLEAC=1;MLEAF=0.5;MQ=59.1;MQRankSum=-5.351;QD=16.8;ReadPosRankSum=-0.365;SOR=0.622 GT:AD:DP:GQ:PGT:PID:PL 0/1:167,131:298:99:0|1:31324516_C_A:5034,0,6699 6 31324536 rs1071816 T G 4984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.497;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=-5.559;QD=17.01;ReadPosRankSum=-0.661;SOR=0.633 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,127:293:99:0|1:31324516_C_A:5013,0,6993 6 31324547 rs1065386 G C 4672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.761;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.5;MQ=58.74;MQRankSum=-6.619;QD=15.95;ReadPosRankSum=-0.335;SOR=0.501 GT:AD:DP:GQ:PGT:PID:PL 0/1:175,118:293:99:0|1:31324516_C_A:4701,0,7216 6 31324549 rs1050570 T C 4561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.344;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=4.607;MLEAC=1;MLEAF=0.5;MQ=58.36;MQRankSum=-7.36;QD=15.31;ReadPosRankSum=-1.209;SOR=0.577 GT:AD:DP:GQ:PGT:PID:PL 0/1:175,123:298:99:0|1:31324516_C_A:4590,0,7015 6 31324586 rs1050556 C T 3795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=57.36;MQRankSum=-10.82;QD=12.01;ReadPosRankSum=-0.44;SOR=0.593 GT:AD:DP:GQ:PGT:PID:PL 0/1:206,110:316:99:0|1:31324586_C_T:3824,0,8256 6 31324603 rs9266178 C T 3773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.963;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.5;MQ=56.52;MQRankSum=-10.352;QD=11.87;ReadPosRankSum=-0.103;SOR=0.526 GT:AD:DP:GQ:PGT:PID:PL 0/1:216,102:318:99:0|1:31324586_C_T:3802,0,8780 6 31324604 rs9266179 T C 3733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.561;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.5;MQ=56.47;MQRankSum=-10.43;QD=11.7;ReadPosRankSum=-0.308;SOR=0.542 GT:AD:DP:GQ:PGT:PID:PL 0/1:216,103:319:99:0|1:31324586_C_T:3762,0,8751 6 31324615 rs1050529 C T 3406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.942;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=5.681;MLEAC=1;MLEAF=0.5;MQ=55.42;MQRankSum=-10.46;QD=11.17;ReadPosRankSum=-0.265;SOR=0.868 GT:AD:DP:GQ:PGT:PID:PL 0/1:209,96:305:99:0|1:31324586_C_T:3435,0,8399 6 31324641 rs1050518 T A 3517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.197;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.5;MQ=52.28;MQRankSum=-10.563;QD=11.2;ReadPosRankSum=-2.037;SOR=0.783 GT:AD:DP:GQ:PGT:PID:PL 0/1:211,103:314:99:0|1:31324641_T_A:3546,0,8361 6 31324643 rs1050517 G C 14125.8 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.96;QD=44.28;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,319:319:99:14154,975,0 6 31324664 rs9266184 T G 3220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.769;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.5;MQ=50.48;MQRankSum=-10.435;QD=10.59;ReadPosRankSum=0.073;SOR=0.67 GT:AD:DP:GQ:PGT:PID:PL 0/1:213,91:304:99:0|1:31324641_T_A:3249,0,8807 6 31324666 rs713031 A T,C 12811.8 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=50.59;QD=41.87;SOR=0.733 GT:AD:DP:GQ:PL 1/2:0,91,215:306:99:12840,8863,8751,3887,0,3217 6 31324702 rs1050486 C T 14671.8 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.23;QD=45.01;SOR=0.756 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,326:326:99:1|1:31324702_C_T:14700,990,0 6 31324705 rs1131170 A C 14589.8 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.42;QD=45.31;SOR=0.744 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,322:322:99:1|1:31324702_C_T:14618,984,0 6 31324711 rs2596492 A G 3044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.602;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=27.972;MLEAC=1;MLEAF=0.5;MQ=52.25;MQRankSum=-2.391;QD=9.73;ReadPosRankSum=-0.559;SOR=1.001 GT:AD:DP:GQ:PL 0/1:198,115:313:99:3073,0,5282 6 31324742 rs147324178 T C 11227.8 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.12;QD=42.05;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,267:267:99:11256,812,0 6 31324847 rs9266198 C G 3507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.297;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.7;ReadPosRankSum=-0.9;SOR=0.577 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,124:210:99:0|1:31324764_C_A:3536,0,2272 6 31324892 rs1131159 G C 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=0.154;SOR=0.734 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,69:188:99:0|1:31324764_C_A:2536,0,4790 6 31324895 rs1131156 G C 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.244;SOR=0.723 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,69:186:99:0|1:31324764_C_A:2536,0,4779 6 31324911 rs1050462 C G 2521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.325;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=-1.726;SOR=0.911 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,63:167:99:0|1:31324764_C_A:2550,0,4175 6 31324921 rs1050459 C T 6701.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.59;SOR=1.454 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,147:147:99:1|1:31324764_C_A:6730,452,0 6 31324925 rs1050458 A G 6541.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.12;SOR=1.561 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,145:145:99:1|1:31324764_C_A:6570,439,0 6 31324931 rs9266206 A C 6341.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.62;SOR=1.51 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,139:139:99:1|1:31324764_C_A:6370,427,0 6 31324941 rs114038515 C T 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.214;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-1.458;SOR=0.984 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,47:130:99:0|1:31324764_C_A:1555,0,3150 6 31324953 rs9266207 C T 2734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.32;ReadPosRankSum=0.911;SOR=0.411 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,70:108:99:0|1:31324764_C_A:2763,0,1337 6 31371430 rs2844519 T C 4913.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=1.432 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4942,462,0 6 31378387 rs1063631 T C 6716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.359;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=1.33;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=21.19;ReadPosRankSum=-0.569;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 0/1:147,170:317:99:0|1:31378387_T_C:6745,0,5863 6 31378388 rs1051785 G A 6716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.067;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=20.92;ReadPosRankSum=-0.237;SOR=0.752 GT:AD:DP:GQ:PGT:PID:PL 0/1:149,172:321:99:0|1:31378387_T_C:6745,0,5863 6 31378425 rs1051786 A G 4782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.421;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=4.831;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=14.07;ReadPosRankSum=1.305;SOR=0.928 GT:AD:DP:GQ:PL 0/1:155,185:340:99:4811,0,3530 6 31378510 rs1063632 G A 3459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=4.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-2.077;SOR=0.895 GT:AD:DP:GQ:PL 0/1:128,145:273:99:3488,0,3081 6 31378928 rs41553614 C T 2569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0;QD=9.81;ReadPosRankSum=0.28;SOR=0.796 GT:AD:DP:GQ:PL 0/1:142,120:262:99:2598,0,3467 6 31378956 rs1051790 C G 2893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.873;SOR=0.732 GT:AD:DP:GQ:PL 0/1:141,120:261:99:2922,0,5156 6 31378977 rs1051792 G A 3091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.419;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=3.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=1.115;SOR=0.493 GT:AD:DP:GQ:PL 0/1:94,120:214:99:3120,0,3525 6 31379059 rs3819268 A T 2173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.361;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=3.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=0.276;SOR=0.747 GT:AD:DP:GQ:PL 0/1:86,78:164:99:2202,0,2064 6 31379109 rs1051794 G A 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.125;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=4.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.799;SOR=0.432 GT:AD:DP:GQ:PL 0/1:89,77:166:99:2029,0,3437 6 31379115 rs1131896 G A 2001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.264;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=4.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=1.2;SOR=1.03 GT:AD:DP:GQ:PL 0/1:78,87:165:99:2030,0,2996 6 31379141 rs2256026 C G 1828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.235;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.371;SOR=0.881 GT:AD:DP:GQ:PL 0/1:71,81:152:99:1857,0,1832 6 31379773 rs1051796 C T 4783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.73;MQRankSum=-3.354;QD=17.21;ReadPosRankSum=-0.117;SOR=0.685 GT:AD:DP:GQ:PGT:PID:PL 0/1:148,130:278:99:0|1:31379773_C_T:4812,0,5506 6 31379794 rs1051797 C T 5161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.58;MQRankSum=-3.61;QD=18.7;ReadPosRankSum=-2.819;SOR=0.673 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,133:276:99:0|1:31379773_C_T:5190,0,5665 6 31379795 rs1131898 A G 5206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.915;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.51;MQRankSum=-3.746;QD=18.87;ReadPosRankSum=-2.786;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,133:276:99:0|1:31379773_C_T:5235,0,5640 6 31379807 rs1051798 C T 5350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.87;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.5;MQ=49.22;MQRankSum=-4.605;QD=18.84;ReadPosRankSum=-2.654;SOR=0.789 GT:AD:DP:GQ:PGT:PID:PL 0/1:148,136:284:99:0|1:31379773_C_T:5379,0,5947 6 31379817 rs1140700 T C 11264.8 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.9;QD=38.71;SOR=0.879 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,291:291:99:1|1:31379773_C_T:11293,893,0 6 31379823 rs1051799 C G 5499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.986;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.5;MQ=47.26;MQRankSum=-4.287;QD=18.9;ReadPosRankSum=-2.76;SOR=0.82 GT:AD:DP:GQ:PGT:PID:PL 0/1:144,147:291:99:0|1:31379773_C_T:5528,0,5563 6 31379931 rs1063635 G A 10078.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.1;QD=29.38;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10107,1026,0 6 31380091 rs147915864 C CT 1459.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.704;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=6.536;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=-2.389;QD=7.93;ReadPosRankSum=1.627;SOR=1.159 GT:AD:DP:GQ:PL 0/1:115,69:185:99:1497,0,2480 6 31380157 rs138201170 TGCTG T 1540.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.14;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.7;MQRankSum=-1.515;QD=12.95;ReadPosRankSum=-0.979;SOR=0.631 GT:AD:DP:GQ:PL 0/1:76,43:119:99:1578,0,3050 6 31380161 . G GCT 2985.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.12;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.71;MQRankSum=1.533;QD=25.09;ReadPosRankSum=0.968;SOR=0.76 GT:AD:DP:GQ:PL 0/1:43,76:119:99:3023,0,1578 6 31466051 rs2534670 T A 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-0.52;SOR=0.72 GT:AD:DP:GQ:PL 0/1:81,67:148:99:1373,0,1788 6 31473486 rs200411452 C T 2362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0.799;QD=8.2;ReadPosRankSum=1.118;SOR=0.842 GT:AD:DP:GQ:PL 0/1:177,111:288:99:2391,0,4515 6 31473546 rs3131639 A G 3511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.666;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=1.867;SOR=0.851 GT:AD:DP:GQ:PL 0/1:124,130:254:99:3540,0,2872 6 31475084 rs11509487 C CTGGGGTGA 5130.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.125;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=8.152;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=2.16;QD=18;ReadPosRankSum=0.224;SOR=1.098 GT:AD:DP:GQ:PL 0/1:153,132:286:99:5168,0,8360 6 31477681 rs1065076 A G 2093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.728;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.987;QD=13.6;ReadPosRankSum=-1.593;SOR=0.845 GT:AD:DP:GQ:PL 0/1:75,79:154:99:2122,0,1718 6 31496776 rs3130054 T G 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.104;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.593;SOR=0.624 GT:AD:DP:GQ:PL 0/1:57,57:114:99:1429,0,1405 6 31496925 rs3093983 G A 2324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.249;SOR=0.6 GT:AD:DP:GQ:PL 0/1:103,104:207:99:2353,0,2424 6 31497706 rs2075582 C T 2447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=0.359;SOR=0.845 GT:AD:DP:GQ:PL 0/1:136,109:245:99:2476,0,3304 6 31506624 rs1129640 T C 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.974;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.597;SOR=0.973 GT:AD:DP:GQ:PL 0/1:66,40:106:99:1058,0,1646 6 31506648 rs933208 G T 652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=-0.032;SOR=0.967 GT:AD:DP:GQ:PL 0/1:38,28:66:99:681,0,1083 6 31525912 rs3130062 C T 9286.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9315,943,0 6 31592064 rs2280801 C T 1895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.82;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=3.442;SOR=0.62 GT:AD:DP:GQ:PL 0/1:102,82:184:99:1924,0,2591 6 31594628 rs3130071 T A 4078.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4107,405,0 6 31595882 rs1046080 C A 7282.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7311,732,0 6 31601344 rs2272593 T C 7529.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7558,702,0 6 31604010 rs13716 C G 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.403;SOR=0.687 GT:AD:DP:GQ:PL 0/1:95,87:182:99:2084,0,2378 6 31604044 rs3132453 T G 6428.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6457,623,0 6 31604355 rs35502919 C A 1524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=1.638;SOR=0.926 GT:AD:DP:GQ:PL 0/1:62,63:125:99:1553,0,1604 6 31610189 rs372412369 TAAAG T 921.73 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.8;QD=41.9;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,22:22:66:959,66,0 6 31610686 rs1052486 A G 8885.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8914,869,0 6 31627523 rs3130617 C T 8586.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8615,834,0 6 31630318 rs28732158 C G 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-1.867;SOR=0.612 GT:AD:DP:GQ:PL 0/1:75,86:161:99:2195,0,1852 6 31657413 rs1475865 T C 7017.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.34;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,217:217:99:7046,651,0 6 31675765 rs2242653 G A 2505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=1.014;SOR=0.905 GT:AD:DP:GQ:PL 0/1:116,102:218:99:2534,0,2995 6 31687008 rs1065356 G A 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=0.47;SOR=0.654 GT:AD:DP:GQ:PL 0/1:106,72:178:99:1581,0,2765 6 31708328 rs2075789 C T 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-1.798;SOR=0.647 GT:AD:DP:GQ:PL 0/1:121,120:241:99:2670,0,2924 6 31725978 rs28399976 C G 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=2.179;SOR=0.815 GT:AD:DP:GQ:PL 0/1:130,108:238:99:2325,0,2993 6 31729359 rs707938 A G 3436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.24;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=1.078;SOR=0.719 GT:AD:DP:GQ:PL 0/1:159,129:288:99:3465,0,3856 6 31731881 rs6905572 C T 905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.491;SOR=0.569 GT:AD:DP:GQ:PL 0/1:36,38:74:99:934,0,872 6 31748820 rs707926 G A 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.026;SOR=0.913 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2159,0,2617 6 31762843 rs2607015 G C 3135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.673;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=11.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.86;ReadPosRankSum=0.787;SOR=1.012 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,83:186:99:0|1:31762843_G_C:3164,0,4350 6 31762844 rs2753960 G T 3135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=11.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.95;ReadPosRankSum=0.703;SOR=1.001 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,83:185:99:0|1:31762843_G_C:3164,0,4350 6 31777946 rs2075800 C T 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.366;SOR=0.79 GT:AD:DP:GQ:PL 0/1:62,63:125:99:1551,0,1595 6 31778272 rs2227956 G A 4967.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4996,485,0 6 31783755 rs1043620 T C 1677.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.2;QD=36.47;SOR=7.701 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1706,138,0 6 31785228 rs506770 G C 10257.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=6.374;MLEAC=2;MLEAF=1;MQ=41.66;MQRankSum=1.739;QD=28.18;ReadPosRankSum=2.939;SOR=0.265 GT:AD:DP:GQ:PL 1/1:2,362:364:99:10286,1028,0 6 31795949 rs140434649 T C 1375.77 SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40;QD=38.22;SOR=7.223 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1404,108,0 6 31797587 rs539689 C G 4824.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.99;QD=30.54;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4853,474,0 6 31838441 rs644827 T C 2021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.344;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=7.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=0.402;SOR=1.206 GT:AD:DP:GQ:PL 0/1:96,81:177:99:2050,0,2193 6 31838490 rs644774 C T 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=1.505;SOR=0.782 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1546,0,1950 6 31838713 rs494620 G A 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.371;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=4.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=1.653;SOR=1.002 GT:AD:DP:GQ:PL 0/1:100,109:209:99:2522,0,2541 6 31839309 rs2242665 C T 1519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=1.496;SOR=0.526 GT:AD:DP:GQ:PL 0/1:72,69:141:99:1548,0,1734 6 31839331 rs2242664 C T 1276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.368;SOR=0.557 GT:AD:DP:GQ:PL 0/1:51,54:105:99:1305,0,1282 6 31843924 rs2736428 C T 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.498;SOR=0.742 GT:AD:DP:GQ:PL 0/1:41,34:75:99:774,0,1002 6 31856070 rs486416 G A 8022.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8051,791,0 6 31860337 rs535586 T C 5174.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5203,489,0 6 31864304 rs659445 G A 5716.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5745,525,0 6 31864547 rs7887 G T 3105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.872;SOR=0.614 GT:AD:DP:GQ:PL 0/1:123,131:254:99:3134,0,2860 6 31903804 rs9332739 G C 1791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.997;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=0.587;SOR=0.566 GT:AD:DP:GQ:PL 0/1:59,71:130:99:1820,0,1347 6 31914024 rs4151667 T A 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.563;SOR=0.844 GT:AD:DP:GQ:PL 0/1:66,57:123:99:1350,0,1518 6 31914935 rs1048709 A G 6249.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6278,624,0 6 31915144 rs4151669 G A 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.516;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-1.482;SOR=0.519 GT:AD:DP:GQ:PL 0/1:97,110:207:99:2736,0,2355 6 31918903 rs4151671 C T 1197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=0.931;SOR=0.633 GT:AD:DP:GQ:PL 0/1:34,50:84:99:1226,0,855 6 31928799 rs419788 T C 1546.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1575,147,0 6 31929014 rs437179 A C 5838.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5867,552,0 6 31936668 rs410851 T C 4250.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4279,412,0 6 31938107 rs474534 A G 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.243;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=1.053;SOR=0.618 GT:AD:DP:GQ:PL 0/1:98,94:192:99:2501,0,2549 6 31962708 rs201459441 AC A 210.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.963;ClippingRankSum=-0;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=-0;QD=12.4;ReadPosRankSum=-3.163;SOR=0.593 GT:AD:DP:GQ:PL 0/1:9,8:17:99:248,0,286 6 31964785 rs201016130 T G 76.89 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.15;ClippingRankSum=-0;DB;DP=4;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1;MQ=32.2;MQRankSum=0.674;QD=19.22;ReadPosRankSum=-0.674;SOR=2.788 GT:AD:DP:GQ:PL 1/1:1,3:4:2:103,2,0 6 31996297 rs370564313 G A 406.77 PASS AC=2;AF=1;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40;QD=36.98;SOR=4.977 GT:AD:DP:GQ:PL 1/1:0,11:11:33:435,33,0 6 32006196 . C T 146.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.998;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=4.453;MLEAC=1;MLEAF=0.5;MQ=52.43;MQRankSum=-3.657;QD=1.83;ReadPosRankSum=-2.966;SOR=0.85 GT:AD:DP:GQ:PL 0/1:68,12:80:99:175,0,1823 6 32006214 rs138498156 CCTG C 2823.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.411;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.5;MQ=50.96;MQRankSum=4.893;QD=34.86;ReadPosRankSum=1.876;SOR=0.98 GT:AD:DP:GQ:PL 0/1:12,69:81:99:2861,0,296 6 32006317 rs6468 C T 3820.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.91;QD=41.53;SOR=0.829 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,92:92:99:1|1:32006317_C_T:3849,279,0 6 32006337 rs6464 C A 3478.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.59;QD=42.42;SOR=1.022 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,82:82:99:1|1:32006317_C_T:3507,246,0 6 32006597 rs6462 C T 979.77 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.39;QD=29.69;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1008,99,0 6 32006886 . G A 341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.845;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=1.914;SOR=1.041 GT:AD:DP:GQ:PL 0/1:19,14:33:99:370,0,453 6 32008783 rs6445 C T 752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.864;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.5;MQ=41.4;MQRankSum=2.048;QD=11.41;ReadPosRankSum=0.109;SOR=1.037 GT:AD:DP:GQ:PL 0/1:37,29:66:99:781,0,1132 6 32010272 rs76250508 T A 3060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=0.42;MLEAC=1;MLEAF=0.5;MQ=57.89;MQRankSum=-1.195;QD=10.2;ReadPosRankSum=-1.006;SOR=0.729 GT:AD:DP:GQ:PL 0/1:166,134:300:99:3089,0,4185 6 32011204 . G C 69.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.97;MQRankSum=-0.385;QD=11.63;ReadPosRankSum=-1.15;SOR=0.693 GT:AD:DP:GQ:PL 0/1:3,3:6:98:98,0,108 6 32011235 rs28361048 C T 90.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.593;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.66;MQRankSum=-0;QD=9.08;ReadPosRankSum=0.241;SOR=0.412 GT:AD:DP:GQ:PL 0/1:6,4:10:99:119,0,217 6 32011248 rs28361049 C T 84.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.363;ClippingRankSum=0;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.52;MQRankSum=0.178;QD=6.05;ReadPosRankSum=0.909;SOR=0.188 GT:AD:DP:GQ:PL 0/1:10,4:14:99:113,0,322 6 32011678 rs2894233 A G 2608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.735;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.5;MQ=55.02;MQRankSum=-0.84;QD=11.65;ReadPosRankSum=-3.649;SOR=0.617 GT:AD:DP:GQ:PL 0/1:118,106:224:99:2637,0,2678 6 32012817 rs141851943 C T 1178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.5;MQ=49.58;MQRankSum=-1.592;QD=4.26;ReadPosRankSum=-0.634;SOR=0.634 GT:AD:DP:GQ:PL 0/1:207,70:277:99:1207,0,5634 6 32013037 rs200491750 C T 892.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.5;MQ=37.05;MQRankSum=0.458;QD=5.51;ReadPosRankSum=-0.922;SOR=0.44 GT:AD:DP:GQ:PL 0/1:115,47:162:99:921,0,3031 6 32025863 rs369637 C T 4771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DB;DP=371;ExcessHet=3.0103;FS=0.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-1.821;SOR=0.65 GT:AD:DP:GQ:PL 0/1:184,187:371:99:4800,0,4766 6 32026107 rs1009382 C T 10251.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.126;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.88;ReadPosRankSum=-0.156;SOR=1.396 GT:AD:DP:GQ:PL 1/1:2,330:332:99:10280,906,0 6 32029226 rs204887 A G 19888.8 PASS AC=2;AF=1;AN=2;DB;DP=664;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=30;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,663:663:99:19917,1986,0 6 32029259 . C T 9199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.395;ClippingRankSum=0;DP=820;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-0.842;QD=11.23;ReadPosRankSum=2.029;SOR=0.592 GT:AD:DP:GQ:PL 0/1:418,401:819:99:9228,0,10231 6 32029415 rs204886 T C 7526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.056;ClippingRankSum=0;DB;DP=598;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=53.15;MQRankSum=-1.784;QD=12.61;ReadPosRankSum=-0.755;SOR=0.719 GT:AD:DP:GQ:PL 0/1:307,290:597:99:7555,0,7711 6 32032743 rs204883 G A 3565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=2.02;SOR=0.633 GT:AD:DP:GQ:PL 0/1:167,150:317:99:3594,0,4307 6 32050067 rs185819 T C 2422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.037;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=3.14;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.847;SOR=0.924 GT:AD:DP:GQ:PL 0/1:103,104:207:99:2451,0,2380 6 32088854 rs2228628 G C 2888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-1.388;SOR=0.71 GT:AD:DP:GQ:PL 0/1:109,112:221:99:2917,0,2718 6 32122386 rs3134604 C G 6071.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6100,607,0 6 32135052 rs141243642 CGGGCCACCCGAGGGACT C 5337.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=2.458;QD=17.16;ReadPosRankSum=1.025;SOR=0.721 GT:AD:DP:GQ:PL 0/1:169,142:311:99:5375,0,6584 6 32135137 rs41268924 G A 3513.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.629;SOR=0.756 GT:AD:DP:GQ:PL 0/1:136,138:274:99:3542,0,3464 6 32151443 rs2070600 C T 2428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.442;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.022;SOR=0.795 GT:AD:DP:GQ:PL 0/1:128,110:238:99:2457,0,2904 6 32151994 rs1800684 A T 3815.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=1.304 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3844,366,0 6 32155183 rs116295847 G T 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.104;QD=9.97;ReadPosRankSum=-1.263;SOR=0.625 GT:AD:DP:GQ:PL 0/1:69,55:124:99:1264,0,1892 6 32156489 rs2022059 G C 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.204;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=1.098;SOR=0.572 GT:AD:DP:GQ:PL 0/1:62,50:112:99:1216,0,1587 6 32169145 rs8192574 G A 2183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.509;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=8.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=0.466;SOR=1.171 GT:AD:DP:GQ:PL 0/1:157,88:245:99:2212,0,3894 6 32172065 rs1044506 T G 7959.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7988,784,0 6 32180241 rs206019 C T 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.203;SOR=0.538 GT:AD:DP:GQ:PL 0/1:63,53:116:99:1330,0,1749 6 32184705 rs3134798 G A 3414.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3443,350,0 6 32188823 rs8192585 G A 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=1.207;SOR=0.459 GT:AD:DP:GQ:PL 0/1:96,82:178:99:2094,0,2591 6 32190390 rs915894 T G 3382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.026;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.35;ReadPosRankSum=0.31;SOR=0.673 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,90:195:99:0|1:32190390_T_G:3411,0,3969 6 32190406 rs443198 A G 3429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.179;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.32;ReadPosRankSum=0.669;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,91:198:99:0|1:32190390_T_G:3458,0,4021 6 32190484 rs8192569 G A 1919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.728;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.523;SOR=0.825 GT:AD:DP:GQ:PL 0/1:88,76:164:99:1948,0,2064 6 32191658 rs150280230 TAGCAGCAGCAGC T 1561.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=1.956;SOR=0.496 GT:AD:DP:GQ:PL 0/1:97,45:142:99:1599,0,3936 6 32261771 rs560505 A G 1221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.318;SOR=0.767 GT:AD:DP:GQ:PL 0/1:50,54:104:99:1250,0,1193 6 32290927 rs4279480 G T 1450.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.37;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1479,158,0 6 32291359 rs4348357 T G 2396.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.55;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2425,260,0 6 32298372 rs9405090 A G 1026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.527;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=1.238;SOR=0.781 GT:AD:DP:GQ:PL 0/1:57,48:105:99:1055,0,1287 6 32299822 rs1003878 G A 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.863;SOR=0.511 GT:AD:DP:GQ:PL 0/1:25,33:58:99:774,0,599 6 32307382 rs1033500 G A 262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.1;ReadPosRankSum=1.141;SOR=0.612 GT:AD:DP:GQ:PL 0/1:24,13:37:99:291,0,692 6 32333955 rs9268368 T C 573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.794;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.589;SOR=0.776 GT:AD:DP:GQ:PL 0/1:20,21:41:99:602,0,563 6 32336586 rs9268384 A G 210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=1.325;QD=6.8;ReadPosRankSum=0.935;SOR=0.321 GT:AD:DP:GQ:PL 0/1:19,12:31:99:239,0,473 6 32337686 rs3129941 A G 1874.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1903,180,0 6 32363816 rs2076530 T C 1083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.959;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.886;SOR=0.966 GT:AD:DP:GQ:PL 0/1:65,44:109:99:1112,0,1599 6 32363844 rs9268480 C T 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.708;SOR=0.78 GT:AD:DP:GQ:PL 0/1:83,68:151:99:1672,0,2134 6 32363955 rs2076529 T C 3291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.337;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-1.577;SOR=0.716 GT:AD:DP:GQ:PL 0/1:124,132:256:99:3320,0,2920 6 32370835 rs2076523 T C 3869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.231;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.17;SOR=0.748 GT:AD:DP:GQ:PL 0/1:153,151:304:99:3898,0,3445 6 32373020 rs200023941 C G 2524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.316;SOR=0.699 GT:AD:DP:GQ:PL 0/1:109,104:213:99:2553,0,2634 6 32407709 rs14004 C A 2450.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.64;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2479,274,0 6 32410987 rs3135391 A G 3377.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3406,351,0 6 32411035 rs8084 A C 3525.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3554,354,0 6 32411523 rs2239804 T C 3922.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=1.532 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3951,360,0 6 32411646 rs7192 T G 5310.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5339,521,0 6 32486315 rs190269257 C A 266.8 PASS AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.88;QD=38.11;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,7:7:21:1|1:32486315_C_A:295,21,0 6 32486319 rs181885231 C A 241.84 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.27;QD=40.31;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,6:6:18:1|1:32486315_C_A:270,18,0 6 32486324 . G A 241.84 SNP_MQ_filter AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.27;QD=40.31;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,6:6:18:1|1:32486315_C_A:270,18,0 6 32486332 rs201788268 C G 241.84 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.27;QD=40.31;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,6:6:18:1|1:32486315_C_A:270,18,0 6 32486344 rs116408738 T C 230.84 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.27;QD=38.47;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,6:6:18:259,18,0 6 32486358 rs115773383 T C 306.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.46;QD=38.35;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,8:8:24:335,24,0 6 32486391 rs139760267 A G 456.18 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0;DB;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=2;MLEAF=1;MQ=39.84;MQRankSum=-0.104;QD=26.83;ReadPosRankSum=0.837;SOR=0.595 GT:AD:DP:GQ:PL 1/1:1,16:17:10:484,10,0 6 32486437 rs1136905 T C 860.77 PASS AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.07;QD=43.04;SOR=1.127 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,20:20:60:1|1:32486437_T_C:889,60,0 6 32486438 rs201046358 G A 185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0;DB;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.08;MQRankSum=-0.041;QD=9.78;ReadPosRankSum=1.723;SOR=0.859 GT:AD:DP:GQ:PL 0/1:9,10:19:99:214,0,209 6 32486447 rs139672306 G A 781.77 PASS AC=2;AF=1;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.03;QD=43.43;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,18:18:54:1|1:32486437_T_C:810,54,0 6 32486456 rs113965088 A G 806.77 PASS AC=2;AF=1;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.16;QD=42.46;SOR=1.292 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,19:19:57:1|1:32486437_T_C:835,57,0 6 32486458 . C A 274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.48;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.16;MQRankSum=-0.706;QD=14.46;ReadPosRankSum=2.152;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,8:19:99:0|1:32486458_C_A:303,0,425 6 32486462 . T A 274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.588;ClippingRankSum=0;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.16;MQRankSum=-0.706;QD=14.46;ReadPosRankSum=1.663;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,8:19:99:0|1:32486458_C_A:303,0,425 6 32487157 rs113069404 T C 93.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.366;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=14.925;MLEAC=1;MLEAF=0.5;MQ=47.24;MQRankSum=-2.73;QD=0.95;ReadPosRankSum=-2.648;SOR=3.706 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,6:99:99:0|1:32487144_C_A:122,0,4127 6 32487170 rs1136633 G A 381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.343;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=7.237;MLEAC=1;MLEAF=0.5;MQ=45.97;MQRankSum=-3.857;QD=3.26;ReadPosRankSum=-3.01;SOR=1.675 GT:AD:DP:GQ:PL 0/1:100,17:117:99:410,0,4190 6 32487172 rs72508430 C T 168.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.93;MQRankSum=-2.238;QD=1.43;ReadPosRankSum=-3.349;SOR=0.739 GT:AD:DP:GQ:PL 0/1:96,22:118:99:197,0,4015 6 32487174 rs112872773 C G 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.749;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.67;MQRankSum=2.093;QD=19.3;ReadPosRankSum=2.853;SOR=0.647 GT:AD:DP:GQ:PL 0/1:22,80:120:99:1997,0,674 6 32487181 rs113405227 G A 212.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.179;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=10.036;MLEAC=1;MLEAF=0.5;MQ=45.03;MQRankSum=-4.104;QD=1.69;ReadPosRankSum=-2.815;SOR=1.896 GT:AD:DP:GQ:PGT:PID:PL 0/1:111,15:126:99:0|1:32487144_C_A:241,0,4555 6 32487214 rs144016913 T C 4232.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.631;MLEAC=2;MLEAF=1;MQ=41.16;MQRankSum=0.694;QD=31.83;ReadPosRankSum=-1.239;SOR=0.389 GT:AD:DP:GQ:PL 1/1:6,127:133:99:4261,129,0 6 32487229 rs148633289 C T 192.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.512;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.13;MQRankSum=-0.604;QD=1.35;ReadPosRankSum=4.386;SOR=0.62 GT:AD:DP:GQ:PL 0/1:117,26:143:99:221,0,3289 6 32487268 rs75732937 A G 4197.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.65;QD=31.56;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4226,402,0 6 32487277 rs74198961 T C 243.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.69;MQRankSum=-1.149;QD=1.88;ReadPosRankSum=-3.797;SOR=0.752 GT:AD:DP:GQ:PL 0/1:106,24:130:99:272,0,3233 6 32487294 rs75709987 C T 932.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=39.51;MQRankSum=4.463;QD=7.77;ReadPosRankSum=0.611;SOR=0.584 GT:AD:DP:GQ:PL 0/1:75,45:120:99:961,0,2063 6 32487309 . T C 3385.77 SNP_MQ_filter AC=2;AF=1;AN=2;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.02;QD=35.64;SOR=1.489 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3414,291,0 6 32487390 rs77180119 T G 652.77 PASS AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.17;QD=40.8;SOR=2.049 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,16:16:48:1|1:32487390_T_G:681,48,0 6 32487398 rs115198947 C T 511.77 PASS AC=2;AF=1;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.96;QD=42.65;SOR=1.445 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,12:12:36:1|1:32487390_T_G:540,36,0 6 32487420 rs138786370 T C,G 247.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=48.86;QD=41.29;SOR=2.303 GT:AD:DP:GQ:PL 1/2:0,3,3:6:99:276,129,117,121,0,109 6 32487424 rs141474277 C A 196.9 PASS AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.56;QD=39.38;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,5:5:15:1|1:32487424_C_A:225,15,0 6 32487426 rs1071751 C G 181.77 PASS AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.56;QD=60.59;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,3:5:9:135,9,0 6 32487427 rs1136787 A G 196.9 PASS AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.56;QD=39.38;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,5:5:15:1|1:32487424_C_A:225,15,0 6 32489669 rs199708823 C G 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.282;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=14.871;MLEAC=1;MLEAF=0.5;MQ=46.94;MQRankSum=1.709;QD=22.8;ReadPosRankSum=-0.347;SOR=0.478 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,27:46:99:0|1:32489640_C_T:1077,0,717 6 32489671 rs115021731 A G 2041.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.94;QD=44.39;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:32489650_A_G:2070,138,0 6 32489672 rs115833135 C A 688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.034;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=14.871;MLEAC=1;MLEAF=0.5;MQ=46.94;MQRankSum=-1.687;QD=14.97;ReadPosRankSum=0.492;SOR=2.389 GT:AD:DP:GQ:PGT:PID:PL 0/1:27,19:46:99:0|1:32489639_C_T:717,0,1077 6 32489674 rs200876031 A G 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=14.871;MLEAC=1;MLEAF=0.5;MQ=46.94;MQRankSum=1.709;QD=22.8;ReadPosRankSum=-0.693;SOR=0.478 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,27:46:99:0|1:32489640_C_T:1077,0,717 6 32489675 rs201850270 T C 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=14.871;MLEAC=1;MLEAF=0.5;MQ=46.94;MQRankSum=1.709;QD=22.8;ReadPosRankSum=-0.793;SOR=0.478 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,27:46:99:0|1:32489640_C_T:1077,0,717 6 32489734 rs115563246 G A 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.351;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.5;MQ=44.41;MQRankSum=-1.747;QD=17.91;ReadPosRankSum=0.652;SOR=0.764 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,22:48:99:0|1:32489734_G_A:888,0,1023 6 32489735 rs115817940 G T 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.5;MQ=44.41;MQRankSum=-1.747;QD=17.91;ReadPosRankSum=0.663;SOR=0.764 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,22:48:99:0|1:32489734_G_A:888,0,1023 6 32489743 . C CTG 859.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.193;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.5;MQ=44.48;MQRankSum=-1.672;QD=19.54;ReadPosRankSum=0.505;SOR=0.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:22,22:44:99:0|1:32489734_G_A:897,0,897 6 32489745 . CGG C 820.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.97;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.5;MQ=44.69;MQRankSum=-1.373;QD=19.54;ReadPosRankSum=0.353;SOR=0.472 GT:AD:DP:GQ:PGT:PID:PL 0/1:21,21:42:99:0|1:32489734_G_A:858,0,858 6 32489749 rs1064594 G C 1706.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.4;QD=43.76;SOR=1.096 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,39:39:99:1|1:32489749_G_C:1735,117,0 6 32489751 . GC G 1697.73 PASS AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.9;QD=48.51;SOR=1.002 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,35:35:99:1|1:32489749_G_C:1735,117,0 6 32489754 . TG T 1537.73 PASS AC=2;AF=1;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.9;QD=43.94;SOR=1.002 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,35:35:99:1|1:32489749_G_C:1575,105,0 6 32489758 . T TGC 1504.73 PASS AC=1;AF=0.5;AN=2;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.9;QD=42.99;SOR=1.002 GT:AD:DP:GQ:PGT:PID:PL 0/1:0,35:35:57:0|1:32489749_G_C:1542,0,57 6 32489766 rs41562819 A G 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40.79;MQRankSum=1.605;QD=38.96;ReadPosRankSum=2.678;SOR=0.595 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,23:30:99:0|1:32489749_G_C:1197,0,207 6 32489791 rs41550412 A G 853.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.171;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.5;MQ=38.36;MQRankSum=2.145;QD=27.54;ReadPosRankSum=1.798;SOR=0.531 GT:AD:DP:GQ:PGT:PID:PL 0/1:10,21:31:99:0|1:32489749_G_C:882,0,354 6 32489794 rs1059350 G A 906.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.929;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=1.459;MLEAC=1;MLEAF=0.5;MQ=37.87;MQRankSum=1.885;QD=26.67;ReadPosRankSum=0.662;SOR=0.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:10,24:34:99:0|1:32489749_G_C:935,0,348 6 32489813 rs79606458 G C 229.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.097;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=21.356;MLEAC=1;MLEAF=0.5;MQ=37.12;MQRankSum=2.836;QD=5.11;ReadPosRankSum=0;SOR=3.025 GT:AD:DP:GQ:PL 0/1:36,9:45:99:258,0,1327 6 32489822 rs115417906 C T 694.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.82;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.94;MQRankSum=-1.603;QD=15.79;ReadPosRankSum=2.137;SOR=0.729 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,19:44:99:0|1:32489822_C_T:723,0,965 6 32489835 rs118111025 C G 700.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.394;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.4;MQRankSum=-1.16;QD=18.44;ReadPosRankSum=1.055;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,19:38:99:0|1:32489822_C_T:729,0,904 6 32489839 rs151326153 G A 709.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.287;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=35.64;MQRankSum=-1.331;QD=18.2;ReadPosRankSum=1.022;SOR=0.644 GT:AD:DP:GQ:PGT:PID:PL 0/1:20,19:39:99:0|1:32489822_C_T:738,0,783 6 32489844 rs140580884 C T 706.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.357;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=35.64;MQRankSum=-1.331;QD=18.12;ReadPosRankSum=0.745;SOR=0.644 GT:AD:DP:GQ:PGT:PID:PL 0/1:20,19:39:99:0|1:32489822_C_T:735,0,825 6 32489846 rs150479833 A T 703.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.438;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.33;MQRankSum=-0.995;QD=18.05;ReadPosRankSum=0.78;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:20,19:39:99:0|1:32489822_C_T:732,0,867 6 32489852 rs192498095 A G 889.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=6.983;MLEAC=1;MLEAF=0.5;MQ=36.01;MQRankSum=-0.19;QD=22.81;ReadPosRankSum=-0.944;SOR=0.976 GT:AD:DP:GQ:PL 0/1:16,23:39:99:918,0,603 6 32489853 rs78961241 A C 1726.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.01;QD=44.28;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,39:39:99:1|1:32489853_A_C:1755,117,0 6 32489856 rs77853982 C A 1771.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.8;QD=44.29;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,40:40:99:1|1:32489853_A_C:1800,120,0 6 32489863 rs143442815 T C 31.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.298;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=9.587;MLEAC=1;MLEAF=0.5;MQ=37.87;MQRankSum=1.156;QD=0.81;ReadPosRankSum=-2.571;SOR=3.254 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,4:39:60:0|1:32489863_T_C:60,0,1500 6 32489868 rs1059576 T G 838.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.874;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.5;MQ=39.51;MQRankSum=1.355;QD=21.51;ReadPosRankSum=0.282;SOR=0.425 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,21:39:99:0|1:32489868_T_G:867,0,732 6 32489874 rs140781802 T A 886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.5;MQ=40.44;MQRankSum=1.604;QD=22.17;ReadPosRankSum=-0.068;SOR=0.439 GT:AD:DP:GQ:PGT:PID:PL 0/1:17,23:40:99:0|1:32489868_T_G:915,0,645 6 32489877 rs138849995 C A 1591.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.544;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=2.944;MLEAC=2;MLEAF=1;MQ=40.44;MQRankSum=-0.282;QD=39.79;ReadPosRankSum=2.329;SOR=0.185 GT:AD:DP:GQ:PL 1/1:2,38:40:30:1620,30,0 6 32489882 rs200298678 T A 523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40.44;MQRankSum=-1.751;QD=13.09;ReadPosRankSum=0.126;SOR=0.675 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,15:40:99:0|1:32489822_C_T:552,0,1047 6 32489883 rs142793258 G C,T 1682.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=40.58;QD=41.04;SOR=1.206 GT:AD:DP:GQ:PL 1/2:0,26,15:41:99:1711,630,552,1084,0,1047 6 32489888 rs147440497 A T 481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.23;MQRankSum=-1.712;QD=12.35;ReadPosRankSum=-0.337;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,14:39:99:0|1:32489822_C_T:510,0,1050 6 32489889 rs201469165 A T 481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.609;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42;MQRankSum=-1.741;QD=12.35;ReadPosRankSum=0.045;SOR=0.664 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,13:39:99:0|1:32489822_C_T:510,0,1050 6 32489892 rs184278615 G A 436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.21;MQRankSum=-1.614;QD=11.49;ReadPosRankSum=-0.141;SOR=0.556 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,12:38:99:0|1:32489822_C_T:465,0,1095 6 32489896 rs189131084 C T 394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.76;MQRankSum=-1.749;QD=10.12;ReadPosRankSum=-0.457;SOR=0.509 GT:AD:DP:GQ:PGT:PID:PL 0/1:27,12:39:99:0|1:32489822_C_T:423,0,1098 6 32489908 rs72508440 G A 349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.78;MQRankSum=-1.851;QD=9.2;ReadPosRankSum=-1.61;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:27,11:38:99:0|1:32489822_C_T:378,0,1143 6 32489913 rs201628145 A G 313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.049;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=3.947;MLEAC=1;MLEAF=0.5;MQ=43.64;MQRankSum=-2.191;QD=9.23;ReadPosRankSum=-1.381;SOR=1.524 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,8:34:99:0|1:32489822_C_T:342,0,1062 6 32489927 rs1136760 T C 67.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.279;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.5;MQ=45.93;MQRankSum=-1.327;QD=2.42;ReadPosRankSum=-1.085;SOR=1.48 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,4:28:96:0|1:32489822_C_T:96,0,996 6 32489928 rs1136757 A G 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.294;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.5;MQ=46.6;MQRankSum=1.588;QD=33.58;ReadPosRankSum=1.365;SOR=0.337 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,23:27:98:0|1:32489928_A_G:935,0,98 6 32489929 rs1141743 C T 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.212;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.84;MQRankSum=1.582;QD=34.88;ReadPosRankSum=1.635;SOR=0.456 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,22:26:98:0|1:32489928_A_G:935,0,98 6 32489933 . T A,G 1063.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=46.84;QD=40.91;SOR=3.098 GT:AD:DP:GQ:PL 1/2:0,22,4:26:99:1092,168,102,924,0,912 6 32489940 rs1071747 G C 1141.77 PASS AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.84;QD=43.91;SOR=3.098 GT:AD:DP:GQ:PL 1/1:0,26:26:78:1170,78,0 6 32489955 rs200414687 T G 763.78 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.667;ClippingRankSum=0;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.76;MQRankSum=1.353;QD=38.19;ReadPosRankSum=2.017;SOR=1.519 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,18:20:27:0|1:32489928_A_G:792,0,27 6 32489963 rs201218424 C A 692.28 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.399;ClippingRankSum=0;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.01;MQRankSum=1.192;QD=38.46;ReadPosRankSum=1.64;SOR=2.948 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,17:18:9:1|1:32489928_A_G:720,9,0 6 32489967 rs116383591 G C 692.28 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.285;ClippingRankSum=0;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.01;MQRankSum=1.192;QD=38.46;ReadPosRankSum=1.639;SOR=2.948 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,17:18:9:1|1:32489928_A_G:720,9,0 6 32497884 . C G 312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=1.16;MLEAC=1;MLEAF=0.5;MQ=48.98;MQRankSum=-4.254;QD=3.86;ReadPosRankSum=1.417;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,13:81:99:0|1:32497852_C_T:341,0,2816 6 32497885 . C T 312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=1.16;MLEAC=1;MLEAF=0.5;MQ=48.98;MQRankSum=-4.254;QD=3.86;ReadPosRankSum=1.513;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,13:81:99:0|1:32497852_C_T:341,0,2816 6 32497901 rs79192142 C T 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.567;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=5.737;MLEAC=1;MLEAF=0.5;MQ=49.27;MQRankSum=7.615;QD=15.62;ReadPosRankSum=-3.355;SOR=1.057 GT:AD:DP:GQ:PGT:PID:PL 0/1:48,35:83:99:0|1:32497901_C_T:1325,0,1910 6 32497904 rs34716432 C T 294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=49.55;MQRankSum=-4.4;QD=3.47;ReadPosRankSum=1.399;SOR=0.747 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,13:85:99:0|1:32497852_C_T:323,0,3061 6 32497905 rs71549219 G T,A 1563.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.518;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.212;MLEAC=1,1;MLEAF=0.5,0.5;MQ=49.68;MQRankSum=4.746;QD=18.18;ReadPosRankSum=-1.881;SOR=0.656 GT:AD:DP:GQ:PL 1/2:18,30,38:86:99:1592,961,1525,102,0,1229 6 32497914 rs76748970 C T 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.802;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=8.523;MLEAC=1;MLEAF=0.5;MQ=50.22;MQRankSum=8.044;QD=17.35;ReadPosRankSum=-0.9;SOR=1.1 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,41:88:99:0|1:32497901_C_T:1555,0,1850 6 32497943 rs17211043 A G 1592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.678;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=5.488;MLEAC=1;MLEAF=0.5;MQ=51.05;MQRankSum=5.566;QD=17.31;ReadPosRankSum=2.902;SOR=0.854 GT:AD:DP:GQ:PL 0/1:34,58:92:99:1621,0,970 6 32497947 . G A 87.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.5;MQ=51.23;MQRankSum=-4.549;QD=0.95;ReadPosRankSum=-0.65;SOR=1.256 GT:AD:DP:GQ:PGT:PID:PL 0/1:81,11:92:99:0|1:32497947_G_A:116,0,3366 6 32497959 . G GAA 660.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=14.667;MLEAC=1;MLEAF=0.5;MQ=52.84;MQRankSum=-4.99;QD=8.47;ReadPosRankSum=-2.153;SOR=2.531 GT:AD:DP:GQ:PL 0/1:58,20:78:99:698,0,2369 6 32497960 . CTT C 614.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.492;ClippingRankSum=0;DP=78;ExcessHet=3.0103;FS=14.667;MLEAC=1;MLEAF=0.5;MQ=52.72;MQRankSum=-4.99;QD=7.88;ReadPosRankSum=-2.674;SOR=2.531 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,20:78:99:0|1:32497960_CTT_C:652,0,2417 6 32497961 rs1064587 T G 2346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.393;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=12.361;MLEAC=1;MLEAF=0.5;MQ=53.32;MQRankSum=5.377;QD=31.29;ReadPosRankSum=2.846;SOR=0.106 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,56:75:99:1|0:32497960_CTT_C:2375,0,655 6 32497962 rs701884 T C 2385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.231;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=12.282;MLEAC=1;MLEAF=0.5;MQ=53.62;MQRankSum=5.604;QD=32.24;ReadPosRankSum=2.966;SOR=0.114 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,55:74:99:1|0:32497960_CTT_C:2414,0,652 6 32497969 . G A 63.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.779;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=14.091;MLEAC=1;MLEAF=0.5;MQ=54.07;MQRankSum=-4.226;QD=0.87;ReadPosRankSum=-1.931;SOR=3.594 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,7:73:92:0|1:32497947_G_A:92,0,2792 6 32497970 rs201644181 T C 818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.768;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=24.072;MLEAC=1;MLEAF=0.5;MQ=54.16;MQRankSum=-7.486;QD=11.37;ReadPosRankSum=-3.408;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,22:72:99:0|1:32497970_T_C:847,0,2016 6 32497975 rs114195860 A G 566.77 SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.726;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=27.287;MLEAC=1;MLEAF=0.5;MQ=55.39;MQRankSum=-7.052;QD=9.29;ReadPosRankSum=-1.272;SOR=5.058 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,12:61:99:0|1:32497970_T_C:595,0,2034 6 32497988 rs201883078 T C 150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.239;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=14.287;MLEAC=1;MLEAF=0.5;MQ=56.14;MQRankSum=-5.431;QD=2.6;ReadPosRankSum=-1.455;SOR=3.654 GT:AD:DP:GQ:PL 0/1:51,7:58:99:179,0,2135 6 32546849 rs1059920 G A 685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=11.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=-1.031;SOR=1.948 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,19:47:99:0|1:32546833_C_A:714,0,1119 6 32546852 rs71822874 TG T 676.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.911;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=11.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=-0.977;SOR=1.948 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,19:47:99:0|1:32546833_C_A:714,0,1119 6 32546854 rs68069105 TG T 2077.73 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.21;SOR=1.022 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,47:47:99:1|1:32546795_T_A:2115,141,0 6 32546866 rs9269693 T C 2185.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.86;SOR=0.994 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,51:51:99:1|1:32546795_T_A:2214,153,0 6 32548066 rs9269745 G T 78.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.477;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.5;MQ=56.78;MQRankSum=1.328;QD=1.75;ReadPosRankSum=-1.466;SOR=1.609 GT:AD:DP:GQ:PL 0/1:38,7:45:99:107,0,993 6 32548507 rs3830130 C A 10694.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.189;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=58.09;MQRankSum=5.749;QD=34.84;ReadPosRankSum=2.718;SOR=0.945 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,275:307:99:0|1:32548507_C_A:10723,0,538 6 32548509 rs35121362 C G 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=2.233;MLEAC=1;MLEAF=0.5;MQ=58.1;MQRankSum=-5.145;QD=5.98;ReadPosRankSum=-0.734;SOR=0.844 GT:AD:DP:GQ:PL 0/1:236,59:316:99:1791,0,9797 6 32548513 rs3830129 G A 523.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.5;MQ=58.09;MQRankSum=-6.294;QD=1.63;ReadPosRankSum=-2.386;SOR=0.493 GT:AD:DP:GQ:PGT:PID:PL 0/1:288,34:322:99:1|0:32548507_C_A:552,0,11970 6 32548514 rs3830128 G A 2449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.893;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=58.1;MQRankSum=-2.079;QD=7.54;ReadPosRankSum=1.233;SOR=0.77 GT:AD:DP:GQ:PL 0/1:249,76:325:99:2478,0,10425 6 32548515 rs202028895 C T 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.626;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.5;MQ=58.04;MQRankSum=0.224;QD=5.11;ReadPosRankSum=-1.432;SOR=0.598 GT:AD:DP:GQ:PL 0/1:267,62:329:99:1708,0,11201 6 32548520 rs3830127 C T 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.5;MQ=58.08;MQRankSum=3.516;QD=4.07;ReadPosRankSum=0.826;SOR=0.513 GT:AD:DP:GQ:PL 0/1:300,59:359:99:1491,0,12318 6 32548534 rs71547382 C T 619.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=420;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.5;MQ=58.21;MQRankSum=-7.084;QD=1.48;ReadPosRankSum=0.858;SOR=0.552 GT:AD:DP:GQ:PGT:PID:PL 0/1:377,42:419:99:0|1:32548534_C_T:648,0,16202 6 32548544 rs199873800 T G 2578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DB;DP=450;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=58.12;MQRankSum=-0.554;QD=5.74;ReadPosRankSum=-0.899;SOR=0.607 GT:AD:DP:GQ:PGT:PID:PL 0/1:360,89:449:99:0|1:32548544_T_G:2607,0,14811 6 32548545 rs201168487 G A 2578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0;DB;DP=451;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=58.1;MQRankSum=-0.493;QD=5.73;ReadPosRankSum=-0.775;SOR=0.613 GT:AD:DP:GQ:PGT:PID:PL 0/1:361,89:450:99:0|1:32548544_T_G:2607,0,14811 6 32548554 . G C 1065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.308;ClippingRankSum=0;DP=473;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=58.06;MQRankSum=-4.596;QD=2.26;ReadPosRankSum=0.473;SOR=0.844 GT:AD:DP:GQ:PGT:PID:PL 0/1:417,55:472:99:0|1:32548534_C_T:1094,0,17482 6 32548556 rs3830125 C T 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.388;ClippingRankSum=0;DB;DP=482;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.5;MQ=57.95;MQRankSum=-5.44;QD=2.22;ReadPosRankSum=-0.133;SOR=0.85 GT:AD:DP:GQ:PGT:PID:PL 0/1:422,59:481:99:0|1:32548534_C_T:1097,0,17440 6 32548581 rs113175445 A G 4446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.242;ClippingRankSum=0;DB;DP=540;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=57.17;MQRankSum=-4.231;QD=8.25;ReadPosRankSum=-0.83;SOR=0.692 GT:AD:DP:GQ:PL 0/1:316,223:539:99:4475,0,6944 6 32548628 rs34624872 G A 2212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.5;MQ=57.29;MQRankSum=-4.21;QD=6.13;ReadPosRankSum=-1.544;SOR=0.831 GT:AD:DP:GQ:PL 0/1:280,81:361:99:2241,0,9703 6 32548641 rs202161934 A T 1630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=2.46;MLEAC=1;MLEAF=0.5;MQ=57.2;MQRankSum=-4.545;QD=5.45;ReadPosRankSum=-1.818;SOR=0.889 GT:AD:DP:GQ:PL 0/1:235,64:299:99:1659,0,9787 6 32549331 rs34309628 C A 96.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.21;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.79;MQRankSum=-2.65;QD=1.56;ReadPosRankSum=-0.924;SOR=0.774 GT:AD:DP:GQ:PGT:PID:PL 0/1:55,7:62:99:0|1:32549331_C_A:125,0,2330 6 32549340 rs33936261 C G 72.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.061;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.42;MQRankSum=-2.583;QD=1.07;ReadPosRankSum=0.081;SOR=0.766 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,7:68:99:0|1:32549331_C_A:101,0,2617 6 32549344 rs111403823 T C 63.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.159;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.28;MQRankSum=-2.585;QD=0.89;ReadPosRankSum=0.647;SOR=0.809 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,7:72:92:0|1:32549331_C_A:92,0,2729 6 32549356 rs28732329 T C 426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.595;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=13.77;MLEAC=1;MLEAF=0.5;MQ=44.38;MQRankSum=-3.638;QD=4.96;ReadPosRankSum=-0.866;SOR=2.621 GT:AD:DP:GQ:PL 0/1:70,16:86:99:455,0,2939 6 32549357 rs200809587 G A 510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.343;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=16.127;MLEAC=1;MLEAF=0.5;MQ=44.17;MQRankSum=-3.527;QD=5.8;ReadPosRankSum=-0.633;SOR=2.742 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,16:88:99:0|1:32549357_G_A:539,0,2969 6 32549361 rs111739605 C T 585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.554;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=20.992;MLEAC=1;MLEAF=0.5;MQ=43.72;MQRankSum=-3.258;QD=6.3;ReadPosRankSum=-1.159;SOR=3.1 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,19:93:99:0|1:32549357_G_A:614,0,3083 6 32549368 rs34295373 G A 238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.5;MQ=42.81;MQRankSum=-1.894;QD=2.3;ReadPosRankSum=-0.764;SOR=1.376 GT:AD:DP:GQ:PL 0/1:89,15:104:99:267,0,3637 6 32549376 rs36044702 C G 114.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.79;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=7.079;MLEAC=1;MLEAF=0.5;MQ=42.05;MQRankSum=-2.312;QD=1.01;ReadPosRankSum=-0.413;SOR=1.914 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,11:114:99:0|1:32549376_C_G:143,0,4325 6 32549380 rs34938122 G A 105.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=6.937;MLEAC=1;MLEAF=0.5;MQ=41.06;MQRankSum=-2.057;QD=0.91;ReadPosRankSum=0.066;SOR=1.794 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,11:116:99:0|1:32549376_C_G:134,0,4421 6 32549396 rs2308775 C G 582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=4.883;MLEAC=1;MLEAF=0.5;MQ=40.51;MQRankSum=0.461;QD=4.41;ReadPosRankSum=-1.594;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,22:132:99:0|1:32549396_C_G:611,0,4592 6 32549398 rs67687262 AC A 546.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.823;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.5;MQ=40.41;MQRankSum=0.085;QD=3.99;ReadPosRankSum=-1.582;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 0/1:114,23:137:99:0|1:32549396_C_G:584,0,4920 6 32549401 rs16822974 T C 4783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.714;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.27;MLEAC=1;MLEAF=0.5;MQ=40.7;MQRankSum=0;QD=33.69;ReadPosRankSum=0.823;SOR=0.284 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,119:142:99:1|0:32549396_C_G:4812,0,581 6 32549402 . C CT 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.137;ClippingRankSum=0;DP=144;ExcessHet=3.0103;FS=15.685;MLEAC=1;MLEAF=0.5;MQ=40.7;MQRankSum=-1.07;QD=5.69;ReadPosRankSum=-1.212;SOR=2.077 GT:AD:DP:GQ:PL 0/1:103,23:142:99:745,0,4456 6 32549416 rs16822692 C T 106.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.447;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=3.237;MLEAC=1;MLEAF=0.5;MQ=41.65;MQRankSum=0.034;QD=0.58;ReadPosRankSum=-1.933;SOR=1.078 GT:AD:DP:GQ:PL 0/1:163,20:183:99:135,0,5314 6 32549424 rs112116022 C T 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.421;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.595;MLEAC=1;MLEAF=0.5;MQ=41.68;MQRankSum=-2.059;QD=4.04;ReadPosRankSum=-1.272;SOR=1.021 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,32:197:99:0|1:32549424_C_T:824,0,6899 6 32549428 rs113663708 G T 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=4.558;MLEAC=1;MLEAF=0.5;MQ=42.2;MQRankSum=-1.532;QD=4.27;ReadPosRankSum=-1.431;SOR=1.108 GT:AD:DP:GQ:PGT:PID:PL 0/1:172,36:208:99:0|1:32549424_C_T:916,0,6975 6 32549452 rs77637983 C G 1738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=20.151;MLEAC=1;MLEAF=0.5;MQ=45.57;MQRankSum=1.192;QD=6.39;ReadPosRankSum=0.482;SOR=0.41 GT:AD:DP:GQ:PL 0/1:192,80:272:99:1767,0,5374 6 32549464 rs78767604 T C 796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.083;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.5;MQ=45.97;MQRankSum=-0.024;QD=2.78;ReadPosRankSum=-0.664;SOR=0.883 GT:AD:DP:GQ:PL 0/1:234,53:287:99:825,0,7472 6 32549475 . T C 13709.8 PASS AC=2;AF=1;AN=2;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.6;QD=45.4;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,302:302:99:13738,933,0 6 32549481 . C T 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.184;ClippingRankSum=0;DP=312;ExcessHet=3.0103;FS=14.922;MLEAC=1;MLEAF=0.5;MQ=47.22;MQRankSum=-0.29;QD=5.88;ReadPosRankSum=-2.01;SOR=0.55 GT:AD:DP:GQ:PL 0/1:222,90:312:99:1863,0,6062 6 32549497 . G A 3950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0;DP=325;ExcessHet=3.0103;FS=16.134;MLEAC=1;MLEAF=0.5;MQ=48.49;MQRankSum=2.782;QD=12.27;ReadPosRankSum=0.811;SOR=0.568 GT:AD:DP:GQ:PL 0/1:185,137:322:99:3979,0,4668 6 32549501 rs78466762 A C,T 13077.8 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=48.87;QD=39.75;SOR=0.788 GT:AD:DP:GQ:PL 1/2:0,269,60:329:99:13106,1707,727,10335,0,10530 6 32549525 . C G 566.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DP=306;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.5;MQ=51.16;MQRankSum=-2.689;QD=1.86;ReadPosRankSum=1.485;SOR=0.878 GT:AD:DP:GQ:PL 0/1:266,38:304:99:595,0,10976 6 32549531 rs112796209 T C 541.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.5;MQ=51.74;MQRankSum=-2.884;QD=1.82;ReadPosRankSum=0.21;SOR=0.853 GT:AD:DP:GQ:PL 0/1:261,37:298:99:570,0,11007 6 32549540 rs74626234 C T 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=13.231;MLEAC=1;MLEAF=0.5;MQ=52.39;MQRankSum=-2.158;QD=3;ReadPosRankSum=0.584;SOR=1.008 GT:AD:DP:GQ:PL 0/1:233,64:297:99:918,0,7747 6 32549548 rs112201403 G A 824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=7.392;MLEAC=1;MLEAF=0.5;MQ=53.1;MQRankSum=-0.375;QD=2.85;ReadPosRankSum=1.144;SOR=1.248 GT:AD:DP:GQ:PL 0/1:247,42:289:99:853,0,10082 6 32549557 rs1059615 G C 735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.977;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=4.181;MLEAC=1;MLEAF=0.5;MQ=53.66;MQRankSum=-0.157;QD=2.7;ReadPosRankSum=-0.223;SOR=1.058 GT:AD:DP:GQ:PL 0/1:235,38:273:99:764,0,9837 6 32549579 rs67245200 TG T 781.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.537;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=12.006;MLEAC=1;MLEAF=0.5;MQ=56.23;MQRankSum=3.342;QD=3.62;ReadPosRankSum=0.737;SOR=1.688 GT:AD:DP:GQ:PL 0/1:179,37:216:99:819,0,7503 6 32549584 rs200088269 C CT 802.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.901;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=10.389;MLEAC=1;MLEAF=0.5;MQ=56.33;MQRankSum=3.107;QD=3.88;ReadPosRankSum=0.35;SOR=1.563 GT:AD:DP:GQ:PL 0/1:170,37:207:99:840,0,7266 6 32549589 rs2308760 A C 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.288;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=5.658;MLEAC=1;MLEAF=0.5;MQ=56.57;MQRankSum=-3.37;QD=9.45;ReadPosRankSum=0.41;SOR=0.39 GT:AD:DP:GQ:PL 0/1:125,69:194:99:1862,0,4228 6 32549596 rs2308759 T C 7981.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.68;QD=45.87;SOR=1.637 GT:AD:DP:GQ:PL 1/1:0,174:174:99:8010,536,0 6 32549607 rs17405219 T G 1509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.267;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=4.487;MLEAC=1;MLEAF=0.5;MQ=57.33;MQRankSum=-3.515;QD=10.13;ReadPosRankSum=0.371;SOR=0.393 GT:AD:DP:GQ:PL 0/1:95,54:149:99:1538,0,3561 6 32549611 rs1071752 T A 2248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.5;MQ=57.7;MQRankSum=-3.27;QD=16.3;ReadPosRankSum=-0.017;SOR=0.467 GT:AD:DP:GQ:PL 0/1:77,61:138:99:2277,0,2769 6 32549625 rs201772136 A G 526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.022;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.5;MQ=58.82;MQRankSum=1.639;QD=4.43;ReadPosRankSum=0.373;SOR=1.307 GT:AD:DP:GQ:PL 0/1:99,20:119:99:555,0,4138 6 32549627 rs72114462 AC A 1676.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.99;MQRankSum=-3.996;QD=14.71;ReadPosRankSum=-0.933;SOR=0.69 GT:AD:DP:GQ:PL 0/1:68,46:114:99:1714,0,1998 6 32549628 rs112142874 C A 768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=58.99;MQRankSum=2.38;QD=6.74;ReadPosRankSum=1.392;SOR=0.413 GT:AD:DP:GQ:PL 0/1:75,39:114:99:797,0,2910 6 32549630 rs62893961 AC A 516.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.232;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=58.97;MQRankSum=1.616;QD=4.57;ReadPosRankSum=-0.166;SOR=0.967 GT:AD:DP:GQ:PL 0/1:93,20:113:99:554,0,3929 6 32549631 rs72500538 C G 3623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=-1.611;QD=34.19;ReadPosRankSum=0.277;SOR=0.468 GT:AD:DP:GQ:PL 0/1:20,86:112:99:3652,0,572 6 32551868 rs9281872 G GC 2032.73 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.11;QD=45.17;SOR=2.059 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,45:45:99:1|1:32551853_G_A:2070,138,0 6 32551874 . G GCC 2167.73 PASS AC=2;AF=1;AN=2;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.81;QD=44.24;SOR=1.911 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,49:49:99:1|1:32551853_G_A:2205,109,0 6 32551876 . CCAT C 2077.74 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.14;MQRankSum=2.083;QD=39.2;ReadPosRankSum=1.733;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,50:53:25:1|1:32551853_G_A:2115,25,0 6 32551920 rs45542832 G A 574.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.169;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.26;MQRankSum=5.798;QD=1.84;ReadPosRankSum=-2.016;SOR=0.626 GT:AD:DP:GQ:PGT:PID:PL 0/1:280,32:312:99:0|1:32551920_G_A:603,0,11973 6 32551928 rs29029549 G A 291.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.258;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.5;MQ=50.11;MQRankSum=-0.104;QD=0.83;ReadPosRankSum=1.921;SOR=0.406 GT:AD:DP:GQ:PL 0/1:318,32:350:99:320,0,13512 6 32551935 rs11554463 G A 3867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.5;MQ=50.29;MQRankSum=9.667;QD=11.72;ReadPosRankSum=-1.348;SOR=0.646 GT:AD:DP:GQ:PL 0/1:219,111:377:99:3896,0,8894 6 32551938 rs16822512 G A 2292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=392;ExcessHet=3.0103;FS=10.584;MLEAC=1;MLEAF=0.5;MQ=50.46;MQRankSum=-10.332;QD=5.86;ReadPosRankSum=1.857;SOR=1.283 GT:AD:DP:GQ:PGT:PID:PL 0/1:314,77:391:99:0|1:32551938_G_A:2321,0,13076 6 32551939 rs9269941 G T 4818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.02;ClippingRankSum=0;DB;DP=394;ExcessHet=3.0103;FS=10.106;MLEAC=1;MLEAF=0.5;MQ=50.51;MQRankSum=-3.327;QD=12.26;ReadPosRankSum=-0.227;SOR=1.131 GT:AD:DP:GQ:PL 0/1:264,129:393:99:4847,0,11057 6 32551947 rs67476479 CG C 2703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.025;ClippingRankSum=0;DB;DP=438;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.5;MQ=50.96;MQRankSum=-3.062;QD=7.33;ReadPosRankSum=-0.808;SOR=0.884 GT:AD:DP:GQ:PL 0/1:283,86:437:99:2732,0,11926 6 32551948 rs17886882 G T 8572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.568;ClippingRankSum=0;DB;DP=438;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=50.96;MQRankSum=9.243;QD=19.62;ReadPosRankSum=-0.649;SOR=0.638 GT:AD:DP:GQ:PL 0/1:221,216:437:99:8601,0,8782 6 32551949 rs16822805 C T 2543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.073;ClippingRankSum=0;DB;DP=440;ExcessHet=3.0103;FS=4.471;MLEAC=1;MLEAF=0.5;MQ=51;MQRankSum=-11.326;QD=5.79;ReadPosRankSum=1.352;SOR=1.09 GT:AD:DP:GQ:PGT:PID:PL 0/1:353,86:439:99:0|1:32551938_G_A:2572,0,15111 6 32551953 rs9281873 CCG C 5582.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.723;ClippingRankSum=0;DB;DP=474;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.41;MQRankSum=3.26;QD=11.8;ReadPosRankSum=2.164;SOR=0.67 GT:AD:DP:GQ:PGT:PID:PL 0/1:320,153:473:99:0|1:32551953_CCG_C:5620,0,13090 6 32551954 rs67798196 CG C 2510.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.268;ClippingRankSum=0;DB;DP=473;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.5;MQ=51.39;MQRankSum=-11.439;QD=5.45;ReadPosRankSum=2.192;SOR=1.071 GT:AD:DP:GQ:PGT:PID:PL 0/1:372,89:461:99:0|1:32551938_G_A:2548,0,15374 6 32551957 rs9269942 G T 8341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0;DB;DP=479;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.5;MQ=51.38;MQRankSum=6.085;QD=17.98;ReadPosRankSum=-2.565;SOR=0.507 GT:AD:DP:GQ:PL 0/1:244,220:464:99:8370,0,9565 6 32551958 rs1064592 C T 9637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0;DB;DP=481;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.42;MQRankSum=-3.071;QD=25.63;ReadPosRankSum=-0.408;SOR=0.706 GT:AD:DP:GQ:PL 0/1:156,220:465:99:9666,0,5813 6 32551960 . T TCC 5528.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DP=486;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.44;MQRankSum=2.751;QD=11.4;ReadPosRankSum=1.196;SOR=0.652 GT:AD:DP:GQ:PGT:PID:PL 0/1:330,155:485:99:0|1:32551953_CCG_C:5566,0,13500 6 32551970 rs17886918 T G 17774.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.598;ClippingRankSum=0;DB;DP=524;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.5;MQ=51.77;MQRankSum=-8.829;QD=34.05;ReadPosRankSum=2.62;SOR=0.788 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,424:522:99:1|0:32551920_G_A:17803,0,2297 6 32551991 rs17882583 A G 3901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.318;ClippingRankSum=0;DB;DP=595;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=52.31;MQRankSum=2.148;QD=6.58;ReadPosRankSum=2.016;SOR=0.842 GT:AD:DP:GQ:PGT:PID:PL 0/1:466,127:593:99:0|1:32551991_A_G:3930,0,19104 6 32551995 rs17853229 A G 13711.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0;DB;DP=604;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=52.48;MQRankSum=-8.837;QD=29.24;ReadPosRankSum=0.798;SOR=0.637 GT:AD:DP:GQ:PL 0/1:134,335:602:99:13680,0,4524 6 32551998 rs17853228 G A 19355.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0;DB;DP=606;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.5;MQ=52.56;MQRankSum=-8.7;QD=32.05;ReadPosRankSum=0.52;SOR=0.615 GT:AD:DP:GQ:PL 0/1:135,469:604:99:19384,0,4156 6 32551999 rs17885129 T G 4121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.597;ClippingRankSum=0;DB;DP=604;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=52.57;MQRankSum=2.344;QD=6.85;ReadPosRankSum=0.309;SOR=0.779 GT:AD:DP:GQ:PGT:PID:PL 0/1:469,133:602:99:0|1:32551991_A_G:4150,0,19554 6 32552016 rs17880973 C A 4035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0;DB;DP=583;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.5;MQ=52.92;MQRankSum=8.621;QD=6.95;ReadPosRankSum=1.052;SOR=0.591 GT:AD:DP:GQ:PGT:PID:PL 0/1:451,130:581:99:0|1:32552016_C_A:4064,0,18776 6 32552017 . G C 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DP=581;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=52.96;MQRankSum=-5.426;QD=3.17;ReadPosRankSum=-0.727;SOR=0.607 GT:AD:DP:GQ:PL 0/1:447,132:579:99:1864,0,15547 6 32552029 rs17884945 A T 18051.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.837;ClippingRankSum=0;DB;DP=566;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=52.87;MQRankSum=-8.152;QD=32.01;ReadPosRankSum=-1.676;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:127,437:564:99:1|0:32552016_C_A:18080,0,4006 6 32552039 rs150747106 C T 3761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.185;ClippingRankSum=0;DB;DP=546;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.98;MQRankSum=6.643;QD=7.08;ReadPosRankSum=1.224;SOR=0.644 GT:AD:DP:GQ:PL 0/1:412,119:544:99:3790,0,17065 6 32552048 rs56158521 C T 4304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0;DB;DP=532;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.5;MQ=53.26;MQRankSum=6.353;QD=8.11;ReadPosRankSum=0.945;SOR=0.581 GT:AD:DP:GQ:PL 0/1:399,132:531:99:4333,0,16483 6 32552056 rs17878951 A G 4187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.39;ClippingRankSum=0;DB;DP=509;ExcessHet=3.0103;FS=2.907;MLEAC=1;MLEAF=0.5;MQ=53.28;MQRankSum=-5.417;QD=8.24;ReadPosRankSum=0.582;SOR=0.942 GT:AD:DP:GQ:PL 0/1:375,133:508:99:4216,0,14849 6 32552059 rs17883134 G T,A 21066.8 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=53.33;QD=43.44;SOR=1.274 GT:AD:DP:GQ:PL 1/2:0,382,103:485:99:21095,4255,3014,16049,0,15637 6 32552067 rs17882603 C T 9533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.266;ClippingRankSum=0;DB;DP=429;ExcessHet=3.0103;FS=2.604;MLEAC=1;MLEAF=0.5;MQ=53.63;MQRankSum=1.443;QD=22.28;ReadPosRankSum=-1.875;SOR=0.524 GT:AD:DP:GQ:PGT:PID:PL 0/1:192,236:428:99:0|1:32552067_C_T:9562,0,7457 6 32552072 rs17879995 T G 4134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.171;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=53.73;MQRankSum=-3.303;QD=10.42;ReadPosRankSum=-0.694;SOR=0.643 GT:AD:DP:GQ:PL 0/1:283,114:397:99:4163,0,11858 6 32552075 rs1064664 A G 6594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.301;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=7.379;MLEAC=1;MLEAF=0.5;MQ=53.98;MQRankSum=0.315;QD=17.54;ReadPosRankSum=3.329;SOR=1.045 GT:AD:DP:GQ:PGT:PID:PL 0/1:206,170:376:99:1|0:32552067_C_T:6623,0,8423 6 32552081 rs11554462 A G 2952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.858;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=2.903;MLEAC=1;MLEAF=0.5;MQ=54.23;MQRankSum=-1.621;QD=8.63;ReadPosRankSum=1.89;SOR=0.877 GT:AD:DP:GQ:PL 0/1:253,89:342:99:2981,0,10856 6 32552085 rs1059575 G C 3094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.179;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.5;MQ=54.43;MQRankSum=2.051;QD=12.14;ReadPosRankSum=1.051;SOR=0.885 GT:AD:DP:GQ:PL 0/1:171,84:321:99:3123,0,7128 6 32552087 rs17878947 C A 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.5;MQ=54.16;MQRankSum=2.197;QD=6.34;ReadPosRankSum=0.158;SOR=0.871 GT:AD:DP:GQ:PL 0/1:250,62:316:99:2007,0,10467 6 32552092 rs16822516 A T 1849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=3.619;MLEAC=1;MLEAF=0.5;MQ=54.49;MQRankSum=1.369;QD=6.56;ReadPosRankSum=0.395;SOR=0.959 GT:AD:DP:GQ:PL 0/1:225,57:282:99:1878,0,9933 6 32552093 rs201929829 ACCGCAC A 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.245;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.5;MQ=54.43;MQRankSum=1.534;QD=6.14;ReadPosRankSum=0.104;SOR=0.904 GT:AD:DP:GQ:PL 0/1:216,52:271:99:1674,0,9843 6 32552112 . A G 1015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.158;ClippingRankSum=0;DP=207;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.5;MQ=53.45;MQRankSum=-7.756;QD=4.93;ReadPosRankSum=-2.471;SOR=0.854 GT:AD:DP:GQ:PGT:PID:PL 0/1:162,44:206:99:0|1:32552112_A_G:1044,0,6220 6 32552129 . C CATGTTTAA 532.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0;DP=129;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.5;MQ=52.82;MQRankSum=-5.735;QD=4.13;ReadPosRankSum=-2.677;SOR=1.413 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,21:129:99:0|1:32552112_A_G:570,0,4631 6 32552130 rs9269951 C A 4424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.5;MQ=53.24;MQRankSum=4.52;QD=38.48;ReadPosRankSum=2.894;SOR=0.11 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,102:115:99:0|1:32552130_C_A:4453,0,542 6 32552131 rs1136759 C G 4230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.12;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=9.086;MLEAC=1;MLEAF=0.5;MQ=53.27;MQRankSum=4.841;QD=37.44;ReadPosRankSum=2.794;SOR=0.09 GT:AD:DP:GQ:PL 0/1:14,99:113:99:4259,0,606 6 32552132 . TCTTAG ACTTAG,T 4913.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=53.07;QD=43.48;SOR=3.403 GT:AD:DP:GQ:PL 1/2:0,101,12:113:99:4942,546,230,4399,0,4370 6 32552134 rs1136756 T G 1745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.9;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=4.134;MLEAC=1;MLEAF=0.5;MQ=52.66;MQRankSum=1.821;QD=16.47;ReadPosRankSum=3.147;SOR=0.266 GT:AD:DP:GQ:PL 0/1:60,46:106:99:1774,0,2358 6 32552137 . G GA 1831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.994;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=12.289;MLEAC=1;MLEAF=0.5;MQ=52.35;MQRankSum=3.09;QD=24.1;ReadPosRankSum=2.831;SOR=0.074 GT:AD:DP:GQ:PL 0/1:31,45:103:99:1860,0,1235 6 32552138 . G GTA 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.727;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.41;MQRankSum=1.584;QD=20.97;ReadPosRankSum=2.18;SOR=0.67 GT:AD:DP:GQ:PL 0/1:39,46:104:99:1811,0,1532 6 32552140 . TG T,AG 2670.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=3.421;MLEAC=1,1;MLEAF=0.5,0.5;MQ=52.25;MQRankSum=0.472;QD=26.98;ReadPosRankSum=1.321;SOR=0.262 GT:AD:DP:GQ:PL 1/2:18,56,25:99:99:2699,325,959,1638,0,2354 6 32552143 rs9269958 C T 1488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.7;MQRankSum=0.549;QD=16.36;ReadPosRankSum=-1.297;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,37:91:99:0|1:32552143_C_T:1517,0,2147 6 32552144 . AC A,CC 4011.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=51.78;QD=47.2;SOR=3.339 GT:AD:DP:GQ:PL 1/2:0,49,36:85:99:4040,1647,1475,2276,0,2150 6 32552146 . AG A 1911.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.128;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.5;MQ=51.22;MQRankSum=-0.427;QD=24.51;ReadPosRankSum=2.18;SOR=0.444 GT:AD:DP:GQ:PL 0/1:32,46:78:99:1949,0,1364 6 32552147 rs9269960 G A 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.5;MQ=50.98;MQRankSum=0.141;QD=16.59;ReadPosRankSum=-1.85;SOR=0.937 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,30:76:99:0|1:32552143_C_T:1289,0,1829 6 32552170 . A ATG 368.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.304;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.5;MQ=51.01;MQRankSum=-0.126;QD=6.96;ReadPosRankSum=-2.007;SOR=0.26 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,13:53:99:0|1:32552170_A_ATG:406,0,1605 6 32552171 . CCA C 386.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.307;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.5;MQ=51.01;MQRankSum=-0.126;QD=7.3;ReadPosRankSum=-2.069;SOR=0.26 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,13:53:99:0|1:32552170_A_ATG:424,0,1635 6 32552172 rs9269961 C G 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.958;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=3.546;MLEAC=1;MLEAF=0.5;MQ=50.95;MQRankSum=-0.068;QD=30.92;ReadPosRankSum=1.955;SOR=1.59 GT:AD:DP:GQ:PL 0/1:12,39:51:99:1605,0,406 6 32557402 rs36032764 C G 339.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.379;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.5;MQ=39.78;MQRankSum=-0.636;QD=6.18;ReadPosRankSum=-0.51;SOR=1.066 GT:AD:DP:GQ:PL 0/1:43,12:55:99:368,0,1853 6 32557403 rs34768224 C T 339.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.5;MQ=39.88;MQRankSum=-0.696;QD=6.07;ReadPosRankSum=-0.36;SOR=1.147 GT:AD:DP:GQ:PL 0/1:44,12:56:99:368,0,1853 6 32557405 rs9270296 G A 2581.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.98;QD=45.29;SOR=1.453 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2610,175,0 6 32557414 rs199613467 A T 225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.42;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=9.823;MLEAC=1;MLEAF=0.5;MQ=40.72;MQRankSum=1.445;QD=3.58;ReadPosRankSum=-1.116;SOR=0.888 GT:AD:DP:GQ:PL 0/1:55,8:63:99:254,0,2279 6 32557418 rs200079869 A G 136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.572;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=6.048;MLEAC=1;MLEAF=0.5;MQ=40.86;MQRankSum=0.859;QD=2.1;ReadPosRankSum=1.289;SOR=1.896 GT:AD:DP:GQ:PL 0/1:57,8:65:99:165,0,2266 6 32557422 rs17879746 C T 384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.5;MQ=41.25;MQRankSum=-0.308;QD=5.74;ReadPosRankSum=0.355;SOR=1.371 GT:AD:DP:GQ:PL 0/1:53,14:67:99:413,0,2215 6 32557423 rs9256943 G T 228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.071;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.5;MQ=41.25;MQRankSum=-1.784;QD=3.52;ReadPosRankSum=-1.381;SOR=0.921 GT:AD:DP:GQ:PL 0/1:51,14:65:99:257,0,1822 6 32557435 rs9270299 A C 3751.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.96;QD=45.2;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3780,253,0 6 32557436 rs201614260 C G 393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=17.406;MLEAC=1;MLEAF=0.5;MQ=43.2;MQRankSum=0.349;QD=4.69;ReadPosRankSum=-0.9;SOR=1.278 GT:AD:DP:GQ:PL 0/1:69,15:84:99:422,0,2852 6 32557446 rs148093782 G C 57.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.871;MLEAC=1;MLEAF=0.5;MQ=44.75;MQRankSum=-0.935;QD=0.48;ReadPosRankSum=-0.292;SOR=1.207 GT:AD:DP:GQ:PL 0/1:111,10:121:86:86,0,4340 6 32557461 rs35053532 A G 807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.49;MQRankSum=0.87;QD=6.57;ReadPosRankSum=1.151;SOR=0.76 GT:AD:DP:GQ:PL 0/1:97,26:123:99:836,0,4055 6 32557465 rs34187469 G A 807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.5;MQ=45.63;MQRankSum=0.634;QD=6.46;ReadPosRankSum=0.596;SOR=0.784 GT:AD:DP:GQ:PL 0/1:98,27:125:99:836,0,4076 6 32557478 rs9270301 C A 3013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=46.32;MQRankSum=-2.496;QD=23.36;ReadPosRankSum=-0.581;SOR=0.704 GT:AD:DP:GQ:PL 0/1:47,82:129:99:3042,0,1528 6 32557479 rs9270302 G A 345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.772;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.5;MQ=46.32;MQRankSum=-0.847;QD=2.68;ReadPosRankSum=-0.1;SOR=0.859 GT:AD:DP:GQ:PL 0/1:107,22:129:99:374,0,4232 6 32557483 rs9270303 T C 5911.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.7;QD=46.19;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,128:128:99:5940,397,0 6 32557487 rs34396110 G A 750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.79;MLEAC=1;MLEAF=0.5;MQ=46.68;MQRankSum=0.219;QD=5.82;ReadPosRankSum=0.937;SOR=0.769 GT:AD:DP:GQ:PL 0/1:103,26:129:99:779,0,4275 6 32557503 rs201726340 A G 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.5;MQ=47.68;MQRankSum=-1.218;QD=12.54;ReadPosRankSum=0.674;SOR=0.892 GT:AD:DP:GQ:PL 0/1:80,41:121:99:1546,0,3119 6 32557506 . T C 1217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.629;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=47.84;MQRankSum=3.022;QD=10.23;ReadPosRankSum=1.973;SOR=0.592 GT:AD:DP:GQ:PL 0/1:83,36:119:99:1246,0,3398 6 32557522 . T TAA 1314.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.06;MQRankSum=-2.346;QD=13.15;ReadPosRankSum=0.215;SOR=0.728 GT:AD:DP:GQ:PL 0/1:66,34:100:99:1352,0,2702 6 32557526 . GAA G 1059.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.663;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.5;MQ=49.21;MQRankSum=-2.245;QD=10.93;ReadPosRankSum=0.577;SOR=0.929 GT:AD:DP:GQ:PL 0/1:66,31:97:99:1097,0,2762 6 32557529 rs1059547 C G 759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=49.39;MQRankSum=-0.413;QD=8;ReadPosRankSum=-1.077;SOR=0.483 GT:AD:DP:GQ:PL 0/1:73,22:95:99:788,0,2960 6 32557531 . G T 1080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.5;MQ=49.52;MQRankSum=-2.502;QD=11.75;ReadPosRankSum=0.4;SOR=0.915 GT:AD:DP:GQ:PL 0/1:62,30:92:99:1109,0,2594 6 32557536 rs17211071 G A 387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.08;MQRankSum=0.638;QD=4.67;ReadPosRankSum=-0.557;SOR=0.712 GT:AD:DP:GQ:PL 0/1:68,15:83:99:416,0,2936 6 32557538 . A T 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.926;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.19;MQRankSum=-2.938;QD=11.9;ReadPosRankSum=0.237;SOR=0.72 GT:AD:DP:GQ:PL 0/1:55,27:82:99:1004,0,2309 6 32605257 rs1047989 C A 1574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=59.18;MQRankSum=-6.803;QD=10.86;ReadPosRankSum=-1.558;SOR=0.786 GT:AD:DP:GQ:PL 0/1:75,70:145:99:1603,0,1844 6 32605274 rs1130034 T C 2630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.757;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-6.462;QD=18.02;ReadPosRankSum=-0.158;SOR=0.703 GT:AD:DP:GQ:PL 0/1:76,70:146:99:2659,0,2847 6 32605284 rs12722039 G A 2702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.5;MQ=59.43;MQRankSum=6.112;QD=19.17;ReadPosRankSum=0.615;SOR=0.836 GT:AD:DP:GQ:PL 0/1:69,72:141:99:2731,0,2693 6 32605295 rs1129735 C T 6005.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.41;QD=44.82;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,134:134:99:6034,406,0 6 32605309 rs12722042 A G 1714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.38;MQRankSum=6.108;QD=13.4;ReadPosRankSum=-0.26;SOR=0.743 GT:AD:DP:GQ:PL 0/1:62,66:128:99:1743,0,1425 6 32605336 rs9272435 G A 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=5.498;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=-4.419;QD=10.89;ReadPosRankSum=0.616;SOR=0.32 GT:AD:DP:GQ:PL 0/1:45,44:89:99:997,0,1209 6 32609094 . C T 540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.5;MQ=59.55;MQRankSum=-3.558;QD=5.81;ReadPosRankSum=1.279;SOR=0.446 GT:AD:DP:GQ:PL 0/1:75,18:93:99:569,0,1963 6 32609105 rs1129740 G A 516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=59.34;MQRankSum=-4.255;QD=5.02;ReadPosRankSum=0.54;SOR=0.676 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,19:103:99:0|1:32609105_G_A:545,0,3397 6 32609106 rs3205916 T C 516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.5;MQ=59.33;MQRankSum=-4.205;QD=5.12;ReadPosRankSum=0.27;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,19:101:99:0|1:32609105_G_A:545,0,3397 6 32609126 rs1071630 T C 477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.105;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.33;MQRankSum=-4.346;QD=4.73;ReadPosRankSum=-1.15;SOR=0.625 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,18:101:99:0|1:32609126_T_C:506,0,3359 6 32609130 rs1129753 C T 477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.115;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.29;MQRankSum=-4.529;QD=4.98;ReadPosRankSum=-1.077;SOR=0.6 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,16:96:99:0|1:32609126_T_C:506,0,3359 6 32609142 . C G 222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.028;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-5.297;QD=2.37;ReadPosRankSum=-0.374;SOR=0.794 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,12:94:99:0|1:32609142_C_G:251,0,3434 6 32609150 . C G 93.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.154;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-6.607;QD=1.01;ReadPosRankSum=1.001;SOR=0.856 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,8:93:99:0|1:32609142_C_G:122,0,3455 6 32609173 rs10093 C G 2648.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.07;QD=29.11;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2677,271,0 6 32609181 rs1129765 C T 48.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.907;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.04;MQRankSum=-7.218;QD=0.55;ReadPosRankSum=-1.819;SOR=0.866 GT:AD:DP:GQ:PL 0/1:80,8:88:77:77,0,1933 6 32609278 rs1142335 G C 33.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.867;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=-4.423;QD=0.63;ReadPosRankSum=1.165;SOR=0.897 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,5:54:62:0|1:32609253_G_A:62,0,2042 6 32609746 rs9272744 C T 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.41;MLEAC=1;MLEAF=0.5;MQ=58.68;MQRankSum=-7.736;QD=5.86;ReadPosRankSum=-0.289;SOR=0.958 GT:AD:DP:GQ:PL 0/1:98,42:140:99:848,0,2669 6 32609813 rs707951 T C 1183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.5;MQ=57.68;MQRankSum=-9.749;QD=6.17;ReadPosRankSum=3.105;SOR=0.575 GT:AD:DP:GQ:PL 0/1:129,63:192:99:1212,0,3154 6 32609855 rs1048173 A C 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.392;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=4.49;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-11.975;QD=3.73;ReadPosRankSum=-1.014;SOR=0.826 GT:AD:DP:GQ:PL 0/1:142,36:178:99:692,0,3768 6 32609873 rs707950 G C 445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.716;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=7.484;MLEAC=1;MLEAF=0.5;MQ=56.82;MQRankSum=-10.463;QD=2.7;ReadPosRankSum=0.166;SOR=1.4 GT:AD:DP:GQ:PL 0/1:142,23:165:99:474,0,3965 6 32609965 rs7990 C A 860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=9.189;MLEAC=1;MLEAF=0.5;MQ=56.03;MQRankSum=-3.1;QD=5.03;ReadPosRankSum=-0.375;SOR=1.066 GT:AD:DP:GQ:PL 0/1:126,45:171:99:889,0,3547 6 32610008 rs2308890 C T 1749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=5.406;MLEAC=1;MLEAF=0.5;MQ=56.02;MQRankSum=-1.32;QD=12.32;ReadPosRankSum=1.279;SOR=0.449 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,49:142:99:0|1:32610008_C_T:1778,0,4758 6 32610009 rs2308891 C G 1749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=4.278;MLEAC=1;MLEAF=0.5;MQ=56.13;MQRankSum=-1.445;QD=12.5;ReadPosRankSum=1.034;SOR=0.472 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,49:140:99:0|1:32610008_C_T:1778,0,4758 6 32610047 rs9272756 T C 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.271;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.5;MQ=58.7;MQRankSum=-3.121;QD=14.53;ReadPosRankSum=-0.561;SOR=0.809 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,52:126:99:0|1:32610047_T_C:1859,0,2908 6 32610401 rs9272785 G A 2661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=4.142;MLEAC=1;MLEAF=0.5;MQ=56.44;MQRankSum=-0.833;QD=12.74;ReadPosRankSum=0.079;SOR=0.469 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,75:209:99:0|1:32610401_G_A:2690,0,5399 6 32610403 rs3188543 C A 2661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.5;MQ=56.42;MQRankSum=-0.893;QD=12.8;ReadPosRankSum=-0.029;SOR=0.473 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,74:208:99:0|1:32610401_G_A:2690,0,5399 6 32610436 rs1048372 T C 10235.8 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.59;QD=43.93;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,233:233:99:1|1:32610436_T_C:10264,707,0 6 32610437 rs35087390 G A 3816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.64;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.5;MQ=56.58;MQRankSum=2.827;QD=16.45;ReadPosRankSum=0.944;SOR=0.585 GT:AD:DP:GQ:PL 0/1:68,164:232:99:3845,0,1233 6 32610461 rs9260 A G 9854.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.48;QD=43.61;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,226:226:99:1|1:32610436_T_C:9883,683,0 6 32610478 rs1048414 C G 1179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=9.379;MLEAC=1;MLEAF=0.5;MQ=56.13;MQRankSum=-5.209;QD=5.75;ReadPosRankSum=0.398;SOR=1.401 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,41:205:99:0|1:32610478_C_G:1208,0,6702 6 32610481 rs1048419 T C 1179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.857;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=9.709;MLEAC=1;MLEAF=0.5;MQ=56.05;MQRankSum=-5.27;QD=5.87;ReadPosRankSum=-0.021;SOR=1.491 GT:AD:DP:GQ:PGT:PID:PL 0/1:161,40:201:99:0|1:32610478_C_G:1208,0,6722 6 32610487 rs1048430 C G 1127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.8;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=9.892;MLEAC=1;MLEAF=0.5;MQ=55.99;MQRankSum=-5.526;QD=5.7;ReadPosRankSum=-0.545;SOR=1.462 GT:AD:DP:GQ:PGT:PID:PL 0/1:160,38:198:99:0|1:32610478_C_G:1156,0,6601 6 32610495 rs9272793 A G 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.774;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=7.204;MLEAC=1;MLEAF=0.5;MQ=55.77;MQRankSum=-5.444;QD=5.68;ReadPosRankSum=-2.121;SOR=1.364 GT:AD:DP:GQ:PGT:PID:PL 0/1:151,37:188:99:0|1:32610478_C_G:1097,0,6198 6 32610535 rs1130116 A C 399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.49;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=9.226;MLEAC=1;MLEAF=0.5;MQ=56.27;MQRankSum=-8.937;QD=3.01;ReadPosRankSum=-3.962;SOR=1.893 GT:AD:DP:GQ:PL 0/1:112,21:133:99:428,0,3053 6 32628001 rs1049175 T C 629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0;DB;DP=18;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=34.99;ReadPosRankSum=0.07;SOR=0.515 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,16:18:36:0|1:32627988_A_G:658,0,36 6 32628045 rs9273472 C G 575.77 PASS AC=2;AF=1;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,19:19:57:604,57,0 6 32628621 rs9273527 T C 780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.073;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.443;QD=6.97;ReadPosRankSum=0.006;SOR=0.721 GT:AD:DP:GQ:PL 0/1:75,37:112:99:809,0,1784 6 32628660 rs28688207 T C 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-1.353;QD=15.76;ReadPosRankSum=0.501;SOR=0.548 GT:AD:DP:GQ:PL 0/1:41,77:118:99:1888,0,964 6 32629110 rs9273608 C T 640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.71;MQRankSum=-4.701;QD=8.43;ReadPosRankSum=0.278;SOR=0.597 GT:AD:DP:GQ:PL 0/1:45,31:76:99:669,0,1291 6 32629129 rs1130432 T C 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.312;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=58.35;MQRankSum=5.222;QD=17.46;ReadPosRankSum=-3.029;SOR=0.574 GT:AD:DP:GQ:PL 0/1:31,59:90:99:1600,0,1125 6 32629137 rs1140343 T G 1083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=-5.272;QD=11.78;ReadPosRankSum=3.065;SOR=0.844 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,31:92:99:0|1:32629137_T_G:1112,0,2531 6 32629141 rs1140342 C T 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.231;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.44;MQRankSum=-5.363;QD=11.25;ReadPosRankSum=3.331;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,31:95:99:0|1:32629137_T_G:1097,0,2757 6 32629146 rs3210168 G A 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.707;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=58.32;MQRankSum=-6.028;QD=11.29;ReadPosRankSum=3.258;SOR=0.859 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,34:105:99:0|1:32629137_T_G:1214,0,2879 6 32629155 rs1130431 C A 2022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.111;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.5;MQ=58.27;MQRankSum=6.402;QD=18.39;ReadPosRankSum=-2.904;SOR=0.492 GT:AD:DP:GQ:PL 0/1:36,74:110:99:2051,0,1499 6 32629161 rs1130430 A G 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.5;MQ=58.48;MQRankSum=-5.672;QD=13.64;ReadPosRankSum=0.694;SOR=0.86 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,46:126:99:0|1:32629137_T_G:1747,0,3297 6 32629170 rs1130410 C G 1737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.46;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=-4.392;QD=12.97;ReadPosRankSum=-0.629;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,50:134:99:0|1:32629137_T_G:1766,0,3310 6 32629193 rs1049163 C T 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=-2.164;QD=7.02;ReadPosRankSum=1.001;SOR=0.808 GT:AD:DP:GQ:PL 0/1:111,58:169:99:1214,0,2876 6 32629239 rs9273670 A G 1425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.741;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.79;QD=9.51;ReadPosRankSum=1.963;SOR=0.613 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,43:150:99:0|1:32629239_A_G:1454,0,4247 6 32629240 rs9273671 G A 6600.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=44.3;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:6629,448,0 6 32629246 rs200420529 A AG 1373.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.137;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=0.031;QD=9.67;ReadPosRankSum=2.2;SOR=0.488 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,40:142:99:0|1:32629239_A_G:1411,0,4107 6 32629247 rs9279979 A AC,C 5966.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.47;QD=42.32;SOR=0.859 GT:AD:DP:GQ:PL 1/2:0,102,39:141:99:5995,1720,1411,4235,0,4107 6 32629737 rs9273912 C T 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=7.031;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=0.68;QD=18.63;ReadPosRankSum=-2.146;SOR=1.325 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,70:132:99:0|1:32629718_G_A:2487,0,2250 6 32629764 rs1130398 C T 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.9;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=9.573;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-1.329;QD=10.03;ReadPosRankSum=0.809;SOR=0.307 GT:AD:DP:GQ:PL 0/1:96,70:166:99:1694,0,2672 6 32629802 rs1049092 A G 2668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=4.456;MLEAC=1;MLEAF=0.5;MQ=59.39;MQRankSum=-3.285;QD=14.91;ReadPosRankSum=-0.813;SOR=0.427 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,72:179:99:0|1:32629802_A_G:2697,0,4248 6 32629809 rs701564 C T 2771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.5;MQ=59.34;MQRankSum=-4.721;QD=14.82;ReadPosRankSum=-1.357;SOR=0.566 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,75:187:99:0|1:32629802_A_G:2800,0,4398 6 32629847 rs1049133 A G 7901.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.057;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.5;MQRankSum=-0.612;QD=38.92;ReadPosRankSum=-0.254;SOR=0.83 GT:AD:DP:GQ:PL 1/1:2,201:203:99:7930,564,0 6 32629859 rs1049130 A G 9423.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.11;QD=44.45;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,212:212:99:9452,647,0 6 32629868 rs1049088 A G 3645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.081;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=4.929;MLEAC=1;MLEAF=0.5;MQ=57.61;MQRankSum=9.747;QD=16.88;ReadPosRankSum=0.862;SOR=0.656 GT:AD:DP:GQ:PL 0/1:78,138:216:99:3674,0,2651 6 32629891 rs1063323 C T 2442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.543;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=8.731;MLEAC=1;MLEAF=0.5;MQ=56.7;MQRankSum=-11.069;QD=12.53;ReadPosRankSum=-0.709;SOR=1.248 GT:AD:DP:GQ:PL 0/1:126,69:195:99:2471,0,3477 6 32629904 rs1049086 A G 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.043;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=10.285;MLEAC=1;MLEAF=0.5;MQ=56.6;MQRankSum=-11.998;QD=11.32;ReadPosRankSum=0.591;SOR=1.334 GT:AD:DP:GQ:PL 0/1:134,63:197:99:2258,0,3475 6 32629935 rs1063322 C G 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.382;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=7.256;MLEAC=1;MLEAF=0.5;MQ=55.82;MQRankSum=-11.435;QD=8.05;ReadPosRankSum=1.579;SOR=1.23 GT:AD:DP:GQ:PL 0/1:142,51:193:99:1581,0,5726 6 32629936 rs1049107 C T 3562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=7.256;MLEAC=1;MLEAF=0.5;MQ=55.82;MQRankSum=11.438;QD=18.46;ReadPosRankSum=-1.413;SOR=0.346 GT:AD:DP:GQ:PL 0/1:51,142:193:99:3591,0,1687 6 32629955 rs1063321 C T 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.441;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=9.778;MLEAC=1;MLEAF=0.5;MQ=54.33;MQRankSum=-8.292;QD=7.26;ReadPosRankSum=0.318;SOR=1.488 GT:AD:DP:GQ:PL 0/1:144,41:185:99:1372,0,5701 6 32629963 rs1049100 C T 3554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=9.307;MLEAC=1;MLEAF=0.5;MQ=53.73;MQRankSum=7.769;QD=20.91;ReadPosRankSum=-0.218;SOR=0.248 GT:AD:DP:GQ:PL 0/1:34,136:170:99:3583,0,1020 6 32630028 rs68027833 G A 2331.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=8.001;MLEAC=2;MLEAF=1;MQ=52.98;MQRankSum=3.417;QD=26.2;ReadPosRankSum=3.303;SOR=0.076 GT:AD:DP:GQ:PL 1/1:5,84:89:87:2360,87,0 6 32632555 rs9274372 G A 531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.5;MQ=57.66;MQRankSum=-3.842;QD=10.23;ReadPosRankSum=-1.587;SOR=1.284 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,16:52:99:0|1:32632486_T_C:560,0,1485 6 32632557 rs41263826 A C 531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.011;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.5;MQ=57.7;MQRankSum=-3.892;QD=10.03;ReadPosRankSum=-1.357;SOR=1.402 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,16:53:99:0|1:32632486_T_C:560,0,1485 6 32632578 rs1140322 T G 612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.5;MQ=58.19;MQRankSum=-4.6;QD=9.01;ReadPosRankSum=1.82;SOR=1.139 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,18:68:99:0|1:32632578_T_G:641,0,2106 6 32632581 rs1140321 T G 600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=4.088;MLEAC=1;MLEAF=0.5;MQ=58.24;MQRankSum=-4.516;QD=8.58;ReadPosRankSum=1.599;SOR=1.311 GT:AD:DP:GQ:PGT:PID:PL 0/1:51,19:70:99:0|1:32632578_T_G:629,0,2274 6 32632587 rs1130397 A G 1646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.258;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=2.353;MLEAC=1;MLEAF=0.5;MQ=58.42;MQRankSum=4.544;QD=21.11;ReadPosRankSum=-1.653;SOR=0.388 GT:AD:DP:GQ:PL 0/1:21,57:78:99:1675,0,753 6 32632589 rs1140320 A G 714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.287;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.5;MQ=58.44;MQRankSum=-4.415;QD=9.05;ReadPosRankSum=1.166;SOR=1.214 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,22:79:99:0|1:32632578_T_G:743,0,2453 6 32632592 rs1140319 C G 708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=-4.595;QD=8.44;ReadPosRankSum=1.864;SOR=1.244 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,22:84:99:0|1:32632578_T_G:737,0,2537 6 32632593 rs1140318 C T 705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=-4.595;QD=8.4;ReadPosRankSum=1.846;SOR=1.244 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,22:84:99:0|1:32632578_T_G:734,0,2579 6 32632598 rs17412833 A T 2467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=3.437;MLEAC=1;MLEAF=0.5;MQ=58.6;MQRankSum=4.615;QD=28.04;ReadPosRankSum=-2.089;SOR=0.396 GT:AD:DP:GQ:PL 0/1:23,65:88:99:2496,0,770 6 32632599 rs9274379 A G 735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.362;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.5;MQ=58.62;MQRankSum=-4.628;QD=8.27;ReadPosRankSum=2.19;SOR=1.088 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,23:89:99:0|1:32632578_T_G:764,0,2744 6 32632601 rs9274380 G T 777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.852;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.5;MQ=58.64;MQRankSum=-4.661;QD=8.64;ReadPosRankSum=2.253;SOR=1.143 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,23:90:99:0|1:32632578_T_G:806,0,2741 6 32632605 rs1140317 C A 810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.458;MLEAC=1;MLEAF=0.5;MQ=58.64;MQRankSum=-4.529;QD=9.01;ReadPosRankSum=1.827;SOR=1.161 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,24:90:99:0|1:32632578_T_G:839,0,2780 6 32632608 rs1140316 C G 816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.368;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.5;MQ=58.64;MQRankSum=-4.403;QD=9.08;ReadPosRankSum=1.569;SOR=1.265 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,25:90:99:0|1:32632578_T_G:845,0,2696 6 32632627 rs1130389 C T 3257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.517;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.1;MQRankSum=4.058;QD=29.09;ReadPosRankSum=-0.55;SOR=0.63 GT:AD:DP:GQ:PGT:PID:PL 0/1:31,81:112:99:0|1:32632627_C_T:3286,0,1121 6 32632628 rs1130392 G C 3341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.394;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.3;MQRankSum=3.728;QD=30.38;ReadPosRankSum=-0.668;SOR=0.659 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,80:110:99:0|1:32632627_C_T:3370,0,1115 6 32632635 rs9274384 A C 3318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.981;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=3.587;QD=29.9;ReadPosRankSum=0.407;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,79:111:99:0|1:32632627_C_T:3347,0,1097 6 32632637 rs1130387 T G 3279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.572;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=3.587;QD=29.55;ReadPosRankSum=0.58;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,79:111:99:0|1:32632627_C_T:3308,0,1094 6 32632638 rs1130385 C A 3320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=3.227;QD=30.47;ReadPosRankSum=0.514;SOR=0.798 GT:AD:DP:GQ:PGT:PID:PL 0/1:31,78:109:99:0|1:32632627_C_T:3349,0,1091 6 32632647 rs1130390 T C 3244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.539;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=2.825;QD=28.22;ReadPosRankSum=0.979;SOR=0.768 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,83:115:99:0|1:32632627_C_T:3273,0,1094 6 32632650 rs1130386 C T 867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.63;MQRankSum=-2.836;QD=7.42;ReadPosRankSum=-0.874;SOR=0.631 GT:AD:DP:GQ:PL 0/1:85,32:117:99:896,0,3441 6 32632687 rs1140314 A G 4128.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.03;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4157,375,0 6 32634263 rs66957194 G T 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.51;ReadPosRankSum=0.271;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,28:41:99:0|1:32634263_G_T:1115,0,462 6 32634264 rs72844399 C T 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.51;ReadPosRankSum=0.29;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,28:41:99:0|1:32634263_G_T:1115,0,462 6 32634300 rs1130366 G C 630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.134;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.536;SOR=0.622 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,19:64:99:0|1:32634300_G_C:659,0,1874 6 32634302 rs1049062 A G 2896.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.57;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2925,196,0 6 32634303 rs1049061 G A 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.886;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.4;ReadPosRankSum=0.357;SOR=0.799 GT:AD:DP:GQ:PGT:PID:PL 0/1:19,46:65:99:0|1:32634303_G_A:1874,0,659 6 32634306 rs1049060 A T 630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.197;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-0.204;SOR=0.655 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,19:65:99:0|1:32634300_G_C:659,0,1874 6 32634313 rs1049059 C G 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.525;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.89;ReadPosRankSum=-0.927;SOR=0.726 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,46:64:99:0|1:32634303_G_A:1877,0,617 6 32634331 rs1049058 G A 649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=1.51;SOR=0.893 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,19:66:99:0|1:32634331_G_A:678,0,1832 6 32634341 rs3189152 A G 633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.562;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=5.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=0.917;SOR=1.226 GT:AD:DP:GQ:PGT:PID:PL 0/1:43,19:62:99:0|1:32634331_G_A:662,0,1792 6 32634350 rs1049057 T C 648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.329;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=1.072;SOR=1.292 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,19:59:99:0|1:32634331_G_A:677,0,1602 6 32634369 rs1049056 C A 1313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.65;ReadPosRankSum=-0.147;SOR=0.469 GT:AD:DP:GQ:PL 0/1:20,38:58:99:1342,0,726 6 32634373 rs9274522 C T 702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-0.163;SOR=0.801 GT:AD:DP:GQ:PL 0/1:35,19:54:99:731,0,1440 6 32634387 rs1049055 C T 1886.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.92;SOR=1.721 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,42:42:99:1|1:32634387_C_T:1915,129,0 6 32709309 rs2051600 A G 4101.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=29.3;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4130,419,0 6 32713018 rs17213281 C T 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=1.339;QD=9.49;ReadPosRankSum=1.003;SOR=0.644 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1148,0,1435 6 32713030 rs3208181 T C 3177.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.63;MQRankSum=8.718;QD=27.63;ReadPosRankSum=-1.144;SOR=0.39 GT:AD:DP:GQ:PL 1/1:3,112:115:99:3206,269,0 6 32713188 rs2213565 C T 2894.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2923,296,0 6 32713784 rs62619945 C A 56.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=3.496;MLEAC=1;MLEAF=0.5;MQ=56.82;MQRankSum=-2.172;QD=0.22;ReadPosRankSum=-1.283;SOR=1.044 GT:AD:DP:GQ:PL 0/1:226,31:257:85:85,0,6154 6 32713854 rs4398729 G A 2303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.1;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=1.038;QD=12.45;ReadPosRankSum=-0.161;SOR=0.613 GT:AD:DP:GQ:PL 0/1:86,99:185:99:2332,0,2044 6 32714125 rs200904145 A G 36.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.5;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=-12.325;QD=0.12;ReadPosRankSum=-0.036;SOR=0.616 GT:AD:DP:GQ:PGT:PID:PL 0/1:286,23:309:65:0|1:32714108_C_G:65,0,11915 6 32714143 rs2071800 G A 3508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.5;MQ=59.38;MQRankSum=3.704;QD=11.81;ReadPosRankSum=0.533;SOR=0.862 GT:AD:DP:GQ:PL 0/1:150,147:297:99:3537,0,3879 6 32714164 rs115121776 T C 293.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-11.343;QD=1.17;ReadPosRankSum=2.218;SOR=0.446 GT:AD:DP:GQ:PGT:PID:PL 0/1:228,24:252:99:0|1:32714164_T_C:322,0,9249 6 32714168 rs9276437 A G 296.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.936;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-11.051;QD=1.24;ReadPosRankSum=1.955;SOR=0.407 GT:AD:DP:GQ:PGT:PID:PL 0/1:215,24:239:99:0|1:32714164_T_C:325,0,9247 6 32714175 rs2071799 C T 5430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.138;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=4.266;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=10.593;QD=24.8;ReadPosRankSum=-1.205;SOR=1.198 GT:AD:DP:GQ:PL 0/1:24,195:219:99:5459,0,422 6 32714182 rs367768119 GA G 4891.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.342;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=4.591;MLEAC=1;MLEAF=0.5;MQ=59.26;MQRankSum=9.731;QD=24.83;ReadPosRankSum=-0.786;SOR=1.306 GT:AD:DP:GQ:PL 0/1:23,174:197:99:4929,0,444 6 32724258 rs3213490 C T 1800.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1829,171,0 6 32725062 rs3213484 T A 3225.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3254,342,0 6 32725619 rs9276570 T C 8161.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.993;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.72;MQRankSum=7.31;QD=43.41;ReadPosRankSum=0.824;SOR=0.566 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,185:188:99:1|1:32725619_T_C:8190,431,0 6 32725620 rs9276571 G A 8161.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.72;MQRankSum=7.31;QD=43.41;ReadPosRankSum=0.872;SOR=0.566 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,185:188:99:1|1:32725619_T_C:8190,431,0 6 32725625 rs9276572 T C 8026.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.71;MQRankSum=7.254;QD=43.39;ReadPosRankSum=1.158;SOR=0.599 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,182:185:99:1|1:32725619_T_C:8055,422,0 6 32725672 . A AG 4722.73 PASS AC=2;AF=1;AN=2;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=44.55;SOR=1.819 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,106:106:99:1|1:32725672_A_AG:4760,319,0 6 32725673 rs9276574 A C 4731.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.54;QD=45.06;SOR=1.796 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,105:105:99:1|1:32725672_A_AG:4760,319,0 6 32726753 rs114145988 G A 3119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=58.76;MQRankSum=3.845;QD=12.63;ReadPosRankSum=1.401;SOR=0.636 GT:AD:DP:GQ:PL 0/1:128,119:247:99:3148,0,3410 6 32726769 rs201563919 A G 155.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.895;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=19.074;MLEAC=1;MLEAF=0.5;MQ=58.52;MQRankSum=-15.943;QD=0.58;ReadPosRankSum=-2.391;SOR=2.513 GT:AD:DP:GQ:PGT:PID:PL 0/1:247,22:269:99:0|1:32726769_A_G:184,0,10295 6 32726774 rs200716952 C T 284.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=9.382;MLEAC=1;MLEAF=0.5;MQ=58.29;MQRankSum=-15.392;QD=1.01;ReadPosRankSum=-3.297;SOR=1.537 GT:AD:DP:GQ:PGT:PID:PL 0/1:252,29:281:99:0|1:32726769_A_G:313,0,10348 6 32726803 rs1049110 C T 6983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=2.842;MLEAC=1;MLEAF=0.5;MQ=57.86;MQRankSum=13.914;QD=21.55;ReadPosRankSum=0.198;SOR=0.585 GT:AD:DP:GQ:PL 0/1:44,280:324:99:7012,0,250 6 32726838 rs17850863 C T 9794.77 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.81;QD=30.23;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,324:324:99:9823,971,0 6 32729459 rs2071551 C T 6923.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=29.46;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6952,704,0 6 32729642 rs762815 G C 7808.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7837,765,0 6 32731258 rs1573649 G A 1145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.71;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.7;ReadPosRankSum=0.696;SOR=1.096 GT:AD:DP:GQ:PL 0/1:27,46:73:99:1174,0,561 6 32797167 rs41316548 C T 1949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-0.359;SOR=0.784 GT:AD:DP:GQ:PL 0/1:126,88:214:99:1978,0,3381 6 32797809 rs2228396 C T 2473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-2.309;SOR=0.75 GT:AD:DP:GQ:PL 0/1:88,107:195:99:2502,0,2061 6 32797876 rs241436 A G 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.124;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.248;SOR=0.754 GT:AD:DP:GQ:PL 0/1:79,77:156:99:2037,0,2026 6 32800412 rs1800454 C T 6010.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6039,596,0 6 32805307 rs2071466 C T 3040.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3069,312,0 6 32810443 rs9276810 G A 2060.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2089,207,0 6 32825090 rs17587 G A 5487.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5516,565,0 6 32904981 rs1042337 G A 4893.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,166:168:99:4922,495,0 6 32945530 rs3097644 G C 5364.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.12;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5393,485,0 6 32948426 rs2071876 C T 2683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=1.343;SOR=0.804 GT:AD:DP:GQ:PL 0/1:85,107:192:99:2712,0,2166 6 32974934 rs378352 G A 5227.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5256,546,0 6 32975257 rs365066 C T 6442.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6471,651,0 6 32975381 rs453779 A G 4003.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=1.317 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4032,383,0 6 32975869 rs375256 G A 6346.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6375,644,0 6 33133424 rs145343609 C T 3533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.765;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.67;SOR=0.692 GT:AD:DP:GQ:PL 0/1:144,146:290:99:3562,0,3418 6 33138677 rs1799911 G A 1632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.592;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=6.699;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.234;QD=9.49;ReadPosRankSum=-1.571;SOR=0.991 GT:AD:DP:GQ:PL 0/1:103,69:172:99:1661,0,2339 6 33138955 rs2855437 G A 2370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.766;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.819;SOR=0.813 GT:AD:DP:GQ:PL 0/1:102,93:195:99:2399,0,2938 6 33139328 rs1799910 C T 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=2.067;SOR=0.511 GT:AD:DP:GQ:PL 0/1:58,58:116:99:1471,0,1495 6 33139475 rs2855436 T G 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.326;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=6.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=1.948;SOR=1.059 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1056,0,949 6 33141161 rs2229785 A G 1745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.381;SOR=0.732 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1774,0,2065 6 33141475 rs970901 C T 1236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=1.744;SOR=0.688 GT:AD:DP:GQ:PL 0/1:78,56:134:99:1265,0,2210 6 33147589 rs3129201 T G 3835.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3864,372,0 6 33152835 rs1799907 A T 926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.031;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=-0.946;SOR=1.123 GT:AD:DP:GQ:PL 0/1:60,41:101:99:955,0,1508 6 33153528 rs9277934 C T 1106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.011;SOR=0.515 GT:AD:DP:GQ:PL 0/1:56,49:105:99:1135,0,1409 6 33163451 rs6531 G A 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-1.085;SOR=0.442 GT:AD:DP:GQ:PL 0/1:63,70:133:99:1668,0,1530 6 33169895 rs1547387 C G 1324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.17;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.733;SOR=0.662 GT:AD:DP:GQ:PL 0/1:54,55:109:99:1353,0,1424 6 33172905 rs365339 T C 1646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.096;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=7.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.83;ReadPosRankSum=-1.284;SOR=1.382 GT:AD:DP:GQ:PL 0/1:46,58:104:99:1675,0,1244 6 33179689 rs2854028 C T 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.451;SOR=0.619 GT:AD:DP:GQ:PL 0/1:93,104:197:99:2513,0,2098 6 33235755 rs213199 G A 2432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.3;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.382;SOR=0.657 GT:AD:DP:GQ:PL 0/1:105,101:206:99:2461,0,2865 6 33254556 . C CG 2876.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.957;QD=18.32;ReadPosRankSum=-0.21;SOR=0.789 GT:AD:DP:GQ:PL 0/1:74,83:157:99:2914,0,2412 6 33256471 rs3130257 T C 5998.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.08;SOR=1.06 GT:AD:DP:GQ:PL 1/1:0,176:176:99:6027,528,0 6 33272855 rs2071888 G C 3177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.013;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.801;SOR=0.502 GT:AD:DP:GQ:PL 0/1:138,121:259:99:3206,0,3655 6 33283766 rs3130100 T C 3774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.795;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=1.263;SOR=0.61 GT:AD:DP:GQ:PL 0/1:122,139:261:99:3803,0,3106 6 33288271 rs1059231 A G 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.047;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-2.03;SOR=0.795 GT:AD:DP:GQ:PL 0/1:56,62:118:99:1395,0,1240 6 33377482 . CTGTG C,CTG 1553.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=48.55;SOR=1.721 GT:AD:DP:GQ:PL 1/2:0,20,12:42:99:1591,328,702,1276,0,1234 6 33382241 rs442745 T C 1965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.775;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=0.784;SOR=0.668 GT:AD:DP:GQ:PL 0/1:73,72:145:99:1994,0,1717 6 33382288 rs3116713 G A 4146.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4175,411,0 6 33408542 rs411136 G A 3035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.173;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-1.008;QD=11.86;ReadPosRankSum=-0.032;SOR=0.783 GT:AD:DP:GQ:PL 0/1:126,130:256:99:3064,0,2860 6 33422976 rs3119025 T G 8950.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8979,880,0 6 33589361 . G GC 645.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.21;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.6;ReadPosRankSum=-0.065;SOR=0.503 GT:AD:DP:GQ:PL 0/1:56,29:85:99:683,0,1557 6 33626905 rs75742993 G T 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=5.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=1.616;SOR=0.453 GT:AD:DP:GQ:PL 0/1:52,82:134:99:1818,0,1130 6 33636907 rs2077163 C T 4172.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4201,408,0 6 33638180 rs2229634 C T 2085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.796;SOR=0.678 GT:AD:DP:GQ:PL 0/1:111,89:200:99:2114,0,2847 6 33641379 rs1803831 T C 5243.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5272,504,0 6 33643558 rs2229637 G A 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.556;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.579;SOR=0.773 GT:AD:DP:GQ:PL 0/1:144,115:259:99:2668,0,3360 6 33644773 rs4713652 T A 7079.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.97;SOR=0.895 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,161:161:99:1|1:33644768_T_C:7108,488,0 6 33646328 rs2274195 T C 2237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.531;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.159;SOR=0.539 GT:AD:DP:GQ:PL 0/1:100,81:181:99:2266,0,2538 6 33648097 rs9469554 A G 2742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.847;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.442;SOR=0.733 GT:AD:DP:GQ:PL 0/1:143,111:254:99:2771,0,3373 6 33648228 rs2229638 C T 3681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.588;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=2.43;SOR=0.827 GT:AD:DP:GQ:PL 0/1:155,145:300:99:3710,0,3948 6 33650430 rs2296331 G C 2901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.146;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.848;SOR=0.715 GT:AD:DP:GQ:PL 0/1:123,120:243:99:2930,0,2958 6 33654897 rs942642 T C 1568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=-0.132;SOR=0.471 GT:AD:DP:GQ:PL 0/1:55,60:115:99:1597,0,1388 6 33656416 rs2296737 G A 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.392;SOR=0.746 GT:AD:DP:GQ:PL 0/1:89,83:172:99:1953,0,2322 6 33659472 rs2229642 C G 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.304;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-1.629;SOR=0.846 GT:AD:DP:GQ:PL 0/1:93,66:159:99:1668,0,2385 6 33660597 rs2229643 C T 1851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-2.047;SOR=0.671 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1880,0,1986 6 33703230 rs545787 G A 2072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.435;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=7.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=-0.167;SOR=0.696 GT:AD:DP:GQ:PL 0/1:153,89:242:99:2101,0,3935 6 33756532 rs13213889 G A 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.451;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=0.554;SOR=0.846 GT:AD:DP:GQ:PL 0/1:73,49:122:99:1221,0,2299 6 33768897 rs2281820 A G 4324.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,139:141:99:4353,417,0 6 34003685 rs2228623 T C 1942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.474;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-1.061;SOR=0.855 GT:AD:DP:GQ:PL 0/1:80,71:151:99:1971,0,1986 6 34008006 rs2229900 A G 1410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.783;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.65;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=0.756;SOR=0.759 GT:AD:DP:GQ:PL 0/1:71,58:129:99:1439,0,1545 6 34069822 rs75813933 G A 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-2.863;SOR=0.513 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1856,0,2048 6 34211238 rs41269028 C T 281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.138;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6;ReadPosRankSum=-0.24;SOR=1.112 GT:AD:DP:GQ:PL 0/1:32,15:47:99:310,0,787 6 34214322 rs1150781 C G 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=1.042;SOR=0.978 GT:AD:DP:GQ:PL 0/1:129,88:217:99:2107,0,3202 6 34215228 rs1150780 G A 979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=4.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.371;SOR=1.427 GT:AD:DP:GQ:PL 0/1:50,36:86:99:1008,0,1373 6 34664207 rs3800456 T G 4110.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=2.027 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4139,390,0 6 34949451 rs3817473 C T 3335.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=2.036 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3364,327,0 6 34949607 rs2293242 C T 9032.77 PASS AC=2;AF=1;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,305:305:99:9061,915,0 6 34962060 rs3823438 G A 4792.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=1.238 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4821,471,0 6 35027927 rs820085 T C 2385.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2414,240,0 6 35047579 rs2762338 G C 4938.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4967,471,0 6 35050506 rs2177382 G A 9314.77 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,328:328:99:9343,982,0 6 35260503 rs1557567 C T 9122.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9151,888,0 6 35260530 rs1557568 C T 8848.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8877,864,0 6 35285720 rs2395617 A C 4862.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4891,498,0 6 35391787 rs2076167 C T 6211.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6240,632,0 6 35474073 rs12215920 C G 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.413;SOR=0.574 GT:AD:DP:GQ:PL 0/1:84,72:156:99:1817,0,2353 6 35477025 rs2064318 C G 5179.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.53;SOR=0.846 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,138:138:99:1|1:35477025_C_G:5208,418,0 6 35477032 rs2064317 A G 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.243;SOR=0.634 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,71:140:99:0|1:35477025_C_G:1652,0,1604 6 35479574 rs7764472 G C 6535.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.68;SOR=1.384 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6564,600,0 6 35705142 rs12193672 A G 3058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.881;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.43;ReadPosRankSum=0.598;SOR=0.823 GT:AD:DP:GQ:PL 0/1:98,114:212:99:3087,0,2373 6 35705892 rs2817041 T C 8301.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8330,855,0 6 35745655 rs2478467 C T 53.74 PASS AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.87;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:81,6,0 6 35748931 rs34109614 T C 464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.195;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=0.128;SOR=0.716 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,21:50:99:1|0:35748904_GGCT_G:493,0,654 6 35755658 rs12211728 A G 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=2.23;SOR=0.643 GT:AD:DP:GQ:PL 0/1:45,34:79:99:784,0,1223 6 35810383 . T TA 194.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=3.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.03;ReadPosRankSum=1.203;SOR=0.566 GT:AD:DP:GQ:PL 0/1:77,19:98:99:232,0,1604 6 35918965 rs116200048 C T 1670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.977;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-0.332;SOR=0.548 GT:AD:DP:GQ:PL 0/1:89,72:161:99:1699,0,2083 6 35923246 rs2295852 T C 4779.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4808,493,0 6 35980121 rs743923 C T 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.933;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=0.567;SOR=0.697 GT:AD:DP:GQ:PL 0/1:116,79:195:99:1789,0,2823 6 36075219 rs9470219 A C 845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.612;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-2.417;SOR=1.166 GT:AD:DP:GQ:PL 0/1:41,34:75:99:874,0,984 6 36098410 rs1059227 A C 2104.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=33.41;SOR=1.366 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2133,189,0 6 36098497 rs146539855 T TGGGGGGC 914.73 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=38.11;SOR=3.442 GT:AD:DP:GQ:PL 1/1:0,24:24:71:952,71,0 6 36260858 rs2239795 C T 2001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=4.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=1.025;SOR=1.081 GT:AD:DP:GQ:PL 0/1:74,77:151:99:2030,0,1960 6 36274153 rs12197079 C T 1232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.342;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.052;SOR=0.697 GT:AD:DP:GQ:PL 0/1:68,55:123:99:1261,0,1536 6 36275458 rs4713956 T C 7216.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7245,732,0 6 36287312 rs743852 G C 4123.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4152,396,0 6 36393816 rs664370 A G 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=6.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.749;SOR=1.114 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1116,0,1080 6 36446975 rs2239808 G C 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.723;SOR=0.626 GT:AD:DP:GQ:PL 0/1:39,50:89:99:1123,0,945 6 36452603 rs11450552 T TA 276.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.03;ReadPosRankSum=-2.046;SOR=1.169 GT:AD:DP:GQ:PL 0/1:33,22:67:99:314,0,652 6 36464481 rs55921013 G A 407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.68;ReadPosRankSum=0.392;SOR=0.611 GT:AD:DP:GQ:PL 0/1:38,23:61:99:436,0,915 6 36651971 rs1801270 C A 1951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=-1.376;SOR=0.598 GT:AD:DP:GQ:PL 0/1:129,88:217:99:1980,0,3427 6 36652339 rs3176352 C G 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.911;SOR=0.927 GT:AD:DP:GQ:PL 0/1:69,51:120:99:1183,0,1775 6 36653597 rs1059234 C T 1394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.639;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=-1.76;SOR=0.835 GT:AD:DP:GQ:PL 0/1:43,59:102:99:1423,0,934 6 36689961 rs183541 A C 7766.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7795,759,0 6 36690155 . G C 4839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.041;ClippingRankSum=0;DP=369;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.477;SOR=0.743 GT:AD:DP:GQ:PL 0/1:179,189:368:99:4868,0,4382 6 36713263 rs763046 A G 6875.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6904,663,0 6 36733132 rs763048 G A 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=0.875;SOR=0.593 GT:AD:DP:GQ:PL 0/1:92,60:152:99:1275,0,2263 6 36853786 rs11461877 A AG 4969.73 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=1.056 GT:AD:DP:GQ:PL 1/1:0,152:152:99:5007,457,0 6 36882353 rs2272275 A G 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.101;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-2.684;SOR=0.85 GT:AD:DP:GQ:PL 0/1:70,80:150:99:2037,0,1733 6 36922684 rs1405069 A C 2731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.066;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.646;SOR=0.73 GT:AD:DP:GQ:PL 0/1:113,109:222:99:2760,0,2532 6 36930814 rs41272198 T C 2343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-1.929;SOR=0.656 GT:AD:DP:GQ:PL 0/1:97,92:189:99:2372,0,2453 6 36931162 rs2296934 A G 7055.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.52;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,217:217:99:7084,650,0 6 36943513 rs2293385 G C 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-1.309;SOR=1.039 GT:AD:DP:GQ:PL 0/1:55,58:113:99:1407,0,1283 6 36945393 rs76406709 G A 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.207;SOR=0.753 GT:AD:DP:GQ:PL 0/1:100,86:186:99:1811,0,2301 6 36945938 rs61748598 C T 517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.16;ReadPosRankSum=-0.025;SOR=0.902 GT:AD:DP:GQ:PL 0/1:59,25:84:99:546,0,1677 6 36978834 rs1753288 A G 1394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.363;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.405;SOR=0.947 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1423,0,1431 6 36988364 rs831504 C T 2195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.386;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.332;SOR=0.703 GT:AD:DP:GQ:PL 0/1:116,92:208:99:2224,0,2685 6 36989391 rs831502 G C 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.26;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.3;SOR=0.586 GT:AD:DP:GQ:PL 0/1:81,70:151:99:1562,0,2024 6 37250112 rs195753 A G 8243.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8272,801,0 6 37252210 rs3818136 C T 4459.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4488,450,0 6 37348920 rs2284923 C T 2535.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2564,249,0 6 37349033 rs2284922 G A 3933.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3962,387,0 6 37443950 rs9462313 G A 1348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=0.29;SOR=0.695 GT:AD:DP:GQ:PL 0/1:87,61:148:99:1377,0,2092 6 37620129 rs2273109 G A 1928.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1957,183,0 6 37623566 rs3846874 C T 4203.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4232,424,0 6 38750888 rs3823430 A G 905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=4.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=1.41;SOR=0.337 GT:AD:DP:GQ:PL 0/1:47,38:85:99:934,0,1150 6 38773293 rs874808 G A 463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.224;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.14;ReadPosRankSum=0.072;SOR=0.43 GT:AD:DP:GQ:PL 0/1:38,19:57:99:492,0,977 6 38781866 rs1678690 C G 853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.038;SOR=0.505 GT:AD:DP:GQ:PL 0/1:31,40:71:99:882,0,720 6 38794183 rs34231573 A AT 447.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-1.563;SOR=0.73 GT:AD:DP:GQ:PL 0/1:15,22:42:99:485,0,305 6 38802341 rs115404395 A G 818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.079;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-3.137;SOR=0.741 GT:AD:DP:GQ:PL 0/1:33,34:67:99:847,0,765 6 38816505 rs61748643 C T 1427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.534;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.528;SOR=0.725 GT:AD:DP:GQ:PL 0/1:60,61:121:99:1456,0,1309 6 38820451 rs9369085 G A 893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.129;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=0.728;SOR=0.852 GT:AD:DP:GQ:PL 0/1:27,35:62:99:922,0,612 6 38825329 rs2061907 C T 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.201;SOR=0.569 GT:AD:DP:GQ:PL 0/1:36,38:74:99:966,0,893 6 38828424 rs34840510 G GT 777.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-1.309;SOR=0.402 GT:AD:DP:GQ:PL 0/1:41,35:76:99:815,0,897 6 38841101 rs9380795 G A 1472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.307;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.992;QD=12.17;ReadPosRankSum=1.293;SOR=0.439 GT:AD:DP:GQ:PL 0/1:59,62:121:99:1501,0,1572 6 38843426 rs6458080 C T 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.705;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.757;SOR=1.051 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1244,0,1495 6 38897453 rs376615002 TA T 179.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.752;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=7.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.68;ReadPosRankSum=1.171;SOR=0.962 GT:AD:DP:GQ:PL 0/1:49,18:81:99:217,0,1138 6 38899643 rs75954496 T A 548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.187;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.31;ReadPosRankSum=-1.996;SOR=0.779 GT:AD:DP:GQ:PL 0/1:61,26:87:99:577,0,1591 6 38951998 rs1537232 C T 505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=3.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=0.126;SOR=0.613 GT:AD:DP:GQ:PL 0/1:37,24:61:99:534,0,944 6 39033602 rs6918287 A G 444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=2.221;SOR=0.693 GT:AD:DP:GQ:PL 0/1:26,19:45:99:473,0,666 6 39034072 rs6923761 G A 1006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.269;SOR=0.859 GT:AD:DP:GQ:PL 0/1:41,45:86:99:1035,0,879 6 39040654 rs2235868 A C 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.258;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=3.033;SOR=0.704 GT:AD:DP:GQ:PL 0/1:57,55:112:99:1206,0,1448 6 39041502 rs1042044 A C 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.514;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.29;SOR=0.568 GT:AD:DP:GQ:PL 0/1:70,59:129:99:1398,0,1561 6 39048491 rs1126476 A C 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.391;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.609;SOR=0.648 GT:AD:DP:GQ:PL 0/1:26,25:51:99:682,0,640 6 39282036 rs10947804 T C 2209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.619;SOR=0.655 GT:AD:DP:GQ:PL 0/1:101,94:195:99:2238,0,2463 6 39282806 rs11756091 G T 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-1.529;SOR=0.558 GT:AD:DP:GQ:PL 0/1:94,107:201:99:2711,0,2373 6 39284050 rs1535500 G T 2987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-0.796;SOR=0.726 GT:AD:DP:GQ:PL 0/1:129,129:258:99:3016,0,3377 6 39284184 rs3734618 A G 2546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.531;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.421;SOR=0.687 GT:AD:DP:GQ:PL 0/1:116,106:222:99:2575,0,2758 6 39290200 rs3734619 C T 2245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.721;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-0.228;SOR=0.643 GT:AD:DP:GQ:PL 0/1:117,88:205:99:2274,0,2996 6 39507889 rs2273063 C T 1624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-0.651;SOR=0.521 GT:AD:DP:GQ:PL 0/1:86,79:165:99:1653,0,2078 6 39513343 rs3736735 A C 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=2.374;SOR=0.548 GT:AD:DP:GQ:PL 0/1:44,36:80:99:722,0,975 6 39851818 rs3003929 G A 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.839;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.55;SOR=0.724 GT:AD:DP:GQ:PL 0/1:48,40:88:99:1005,0,1166 6 39855288 rs35383047 C A 594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.305;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.34;ReadPosRankSum=-0.818;SOR=0.337 GT:AD:DP:GQ:PL 0/1:47,34:81:99:623,0,1283 6 39864730 rs3008815 C T 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.002;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.525;SOR=0.657 GT:AD:DP:GQ:PL 0/1:94,82:176:99:1975,0,2367 6 39865047 rs3004067 T C 2051.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2080,213,0 6 39869066 rs882559 G C 2928.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2957,279,0 6 39874244 rs41273138 G A 2266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.201;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-0.747;SOR=0.611 GT:AD:DP:GQ:PL 0/1:116,92:208:99:2295,0,2854 6 39874689 rs11969206 C A 3079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.47;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=0.395;SOR=0.869 GT:AD:DP:GQ:PL 0/1:97,120:217:99:3108,0,2534 6 39874832 rs11969233 C G 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.564;SOR=0.55 GT:AD:DP:GQ:PL 0/1:90,98:188:99:2257,0,2240 6 39874875 rs11969769 G T 1995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=7.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=0.989;SOR=0.338 GT:AD:DP:GQ:PL 0/1:70,81:151:99:2024,0,1746 6 39883806 rs111409017 G A 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=0.156;SOR=0.594 GT:AD:DP:GQ:PL 0/1:119,83:202:99:1791,0,2888 6 39893510 rs61746375 G A 2698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=1.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.008;SOR=0.812 GT:AD:DP:GQ:PL 0/1:130,123:253:99:2727,0,2934 6 40360465 rs3734557 A G 3962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.007;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=4.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=1.452;SOR=0.661 GT:AD:DP:GQ:PL 0/1:132,151:287:99:3991,0,3276 6 40399446 rs7775772 T C 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-1.978;SOR=1.016 GT:AD:DP:GQ:PL 0/1:54,59:113:99:1616,0,1394 6 40400868 rs9394693 C T 2616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.973;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=6.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.53;ReadPosRankSum=0.061;SOR=1.25 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,70:134:99:0|1:40400868_C_T:2645,0,3116 6 40998141 rs736795 G A 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.14;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=0.073;SOR=0.607 GT:AD:DP:GQ:PL 0/1:105,75:180:99:1471,0,2571 6 41029109 rs2073014 T C 2422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.349;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.617;SOR=0.802 GT:AD:DP:GQ:PL 0/1:119,98:217:99:2451,0,3010 6 41029342 rs2076472 T C 4780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=-0.177;SOR=0.711 GT:AD:DP:GQ:PL 0/1:145,191:336:99:4809,0,3540 6 41121974 rs41273762 T C 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.88;SOR=0.733 GT:AD:DP:GQ:PL 0/1:43,46:89:99:1138,0,1022 6 41165840 rs6902672 T C 2859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.5;MQ=57.28;MQRankSum=-3.158;QD=20;ReadPosRankSum=-0.425;SOR=0.513 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,79:143:99:0|1:41165819_C_T:2888,0,3441 6 41165977 rs41273770 A G 2658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.254;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=54.83;MQRankSum=1.776;QD=10.35;ReadPosRankSum=-0.048;SOR=0.685 GT:AD:DP:GQ:PL 0/1:146,111:257:99:2687,0,3271 6 41166149 rs62396355 A G 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.995;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.668;MLEAC=1;MLEAF=0.5;MQ=59.29;MQRankSum=-5.378;QD=14.73;ReadPosRankSum=0.557;SOR=1.006 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,72:177:99:0|1:41166149_A_G:2636,0,6720 6 41166151 rs61998254 A G 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.451;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.5;MQ=59.26;MQRankSum=-5.601;QD=15.34;ReadPosRankSum=1.411;SOR=0.895 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,66:170:99:0|1:41166149_A_G:2636,0,6720 6 41166154 rs77704965 G C 2429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-5.543;QD=14.73;ReadPosRankSum=1.022;SOR=0.757 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,65:165:99:0|1:41166149_A_G:2458,0,6694 6 41166155 rs41273772 T C 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-5.517;QD=14.6;ReadPosRankSum=0.673;SOR=0.774 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,65:164:99:0|1:41166149_A_G:2422,0,6604 6 41168713 . ACAG A 208.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0;DP=184;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=4.189;QD=1.2;ReadPosRankSum=-1.239;SOR=0.531 GT:AD:DP:GQ:PL 0/1:156,18:174:99:246,0,6705 6 41196156 rs2803496 C T 1254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.323;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.568;QD=9.65;ReadPosRankSum=-1.301;SOR=0.931 GT:AD:DP:GQ:PL 0/1:71,59:130:99:1283,0,1646 6 41196605 rs9369265 T C 2716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.094;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-0.221;QD=14.45;ReadPosRankSum=-0.008;SOR=0.71 GT:AD:DP:GQ:PL 0/1:74,114:188:99:2745,0,1847 6 41196727 rs2101269 C T 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.195;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-1.164;SOR=0.645 GT:AD:DP:GQ:PL 0/1:89,97:186:99:2314,0,1970 6 41197785 rs9296357 T C 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.455;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-1.312;SOR=0.915 GT:AD:DP:GQ:PL 0/1:40,48:88:99:1155,0,807 6 41197857 rs7769759 C T 1364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=-1.457;SOR=0.495 GT:AD:DP:GQ:PL 0/1:40,60:100:99:1393,0,938 6 41309552 rs2236369 T C 9121.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,312:312:99:9150,936,0 6 41318438 rs2273962 A G 2648.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2677,264,0 6 41621271 rs2230088 G A 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=-1.5;SOR=0.66 GT:AD:DP:GQ:PL 0/1:150,117:267:99:2500,0,3573 6 41652514 rs2073158 C T 4167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=0.344;SOR=0.642 GT:AD:DP:GQ:PL 0/1:135,159:294:99:4196,0,3395 6 41652604 rs1062966 T C 8704.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8733,868,0 6 41658566 rs2273068 C T 3331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.735;SOR=0.813 GT:AD:DP:GQ:PL 0/1:167,139:306:99:3360,0,4275 6 41658889 rs1015149 C T 3985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.834;SOR=0.62 GT:AD:DP:GQ:PL 0/1:199,178:377:99:4014,0,5150 6 41753084 rs9394831 C T 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=0.866;SOR=0.647 GT:AD:DP:GQ:PL 0/1:71,77:148:99:2088,0,1862 6 41754576 rs9381093 C T 2515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.859;SOR=0.833 GT:AD:DP:GQ:PL 0/1:113,103:216:99:2544,0,2888 6 41773735 rs6926173 G A 2271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.242;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=0.957;SOR=0.551 GT:AD:DP:GQ:PL 0/1:145,103:248:99:2300,0,3915 6 41895150 rs2296916 G A 2571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.818;SOR=0.559 GT:AD:DP:GQ:PL 0/1:121,118:239:99:2600,0,2971 6 41900406 rs3828855 C T 1913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=0.529;SOR=0.607 GT:AD:DP:GQ:PL 0/1:119,83:202:99:1942,0,3100 6 41903782 rs1051130 A C 5206.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5235,528,0 6 42044945 rs3800286 G A 4347.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4376,420,0 6 42074106 rs9394866 A G 2730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.259;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-0.477;SOR=0.572 GT:AD:DP:GQ:PL 0/1:106,101:207:99:2759,0,2687 6 42162388 rs3749921 A G 1631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=2.059;SOR=0.523 GT:AD:DP:GQ:PL 0/1:69,73:142:99:1660,0,1694 6 42162575 rs1474867 A G 2058.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=1.963 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2087,192,0 6 42176120 rs2295278 G T 351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.46;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.76;ReadPosRankSum=0.285;SOR=0.892 GT:AD:DP:GQ:PL 0/1:36,16:52:99:380,0,1030 6 42185564 rs9471809 A C 1390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.121;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=0.326;SOR=0.859 GT:AD:DP:GQ:PL 0/1:50,55:105:99:1419,0,1212 6 42224546 rs2295275 A T 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-1.961;SOR=0.857 GT:AD:DP:GQ:PL 0/1:61,44:105:99:1107,0,1656 6 42232475 rs2295274 G A 2700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.052;SOR=0.707 GT:AD:DP:GQ:PL 0/1:132,118:250:99:2729,0,3251 6 42532102 rs3749897 C T 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.533;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.826;SOR=0.721 GT:AD:DP:GQ:PL 0/1:112,101:213:99:2331,0,2978 6 42571346 rs16895863 A T 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-1.079;SOR=0.681 GT:AD:DP:GQ:PL 0/1:72,51:123:99:1221,0,1845 6 42600319 rs5014584 A G 4728.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4757,479,0 6 42627430 rs6916713 C T 2571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.07;ReadPosRankSum=0.026;SOR=0.824 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,65:160:99:0|1:42627430_C_T:2600,0,5244 6 42627434 rs6917033 G A 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=-1.194;SOR=0.924 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,74:173:99:0|1:42627430_C_T:2670,0,5279 6 42644623 rs2038261 A G 569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.022;SOR=1.007 GT:AD:DP:GQ:PL 0/1:29,24:53:99:598,0,741 6 42658752 rs373341 T C 4234.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4263,420,0 6 42666020 rs361524 G A 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.056;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=1.539;SOR=0.845 GT:AD:DP:GQ:PL 0/1:94,94:188:99:2469,0,2390 6 42666061 rs434102 T C 8191.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8220,786,0 6 42666145 rs425876 C T 9893.77 PASS AC=2;AF=1;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,329:329:99:9922,988,0 6 42666164 rs390659 G C 10103.8 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,320:320:99:10132,960,0 6 42689755 rs7764439 A G 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.336;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.28;SOR=0.844 GT:AD:DP:GQ:PL 0/1:109,102:211:99:2807,0,2737 6 42713618 rs2234026 A G 9811.77 PASS AC=2;AF=1;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9840,895,0 6 42824907 rs9471932 G A 1468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=4.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=-0.728;SOR=1.072 GT:AD:DP:GQ:PL 0/1:46,59:105:99:1497,0,1043 6 42832683 rs10456519 G A 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.641;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.586;SOR=0.636 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1562,0,1820 6 42891022 rs9471966 G A 2031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=1.617;SOR=0.768 GT:AD:DP:GQ:PL 0/1:79,84:163:99:2060,0,1880 6 42931261 rs2296804 C G 1787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.484;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=6.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-0.537;SOR=0.562 GT:AD:DP:GQ:PL 0/1:67,76:143:99:1816,0,1798 6 42932200 rs1129187 G T 2602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.95;ReadPosRankSum=1.914;SOR=0.701 GT:AD:DP:GQ:PGT:PID:PL 0/1:76,69:145:99:0|1:42932200_G_T:2631,0,4296 6 42932202 rs1129186 C T 2602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.53;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.07;ReadPosRankSum=2.017;SOR=0.669 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,69:144:99:0|1:42932200_G_T:2631,0,4296 6 42934500 rs2274514 C T 1703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.025;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.436;SOR=0.604 GT:AD:DP:GQ:PL 0/1:84,70:154:99:1732,0,1968 6 42942779 rs9986447 A G 893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.723;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.776;SOR=0.965 GT:AD:DP:GQ:PL 0/1:35,33:68:99:922,0,801 6 42946490 rs9462858 C A 3538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.336;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=1.174;SOR=0.667 GT:AD:DP:GQ:PL 0/1:150,148:298:99:3567,0,4063 6 43014298 rs9394939 T C 15925.8 PASS AC=2;AF=1;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.86;SOR=0.71 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,355:355:99:1|1:43014298_T_C:15954,1069,0 6 43014299 rs9381231 T C 15925.8 PASS AC=2;AF=1;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.99;SOR=0.704 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,354:354:99:1|1:43014298_T_C:15954,1069,0 6 43034839 . T TG 48.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.012;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=102.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.5;ReadPosRankSum=-3.052;SOR=5.13 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,12:98:86:0|1:43034839_T_TG:86,0,4210 6 43034844 . A C 170.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=105.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.78;ReadPosRankSum=-3.641;SOR=5.13 GT:AD:DP:GQ:PL 0/1:84,12:96:99:199,0,1701 6 43034849 . A C 53.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=97.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.6;ReadPosRankSum=-3.975;SOR=4.796 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,10:90:82:0|1:43034839_T_TG:82,0,4103 6 43034851 . G C 49.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=93.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.54;ReadPosRankSum=-3.947;SOR=4.796 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,10:92:78:0|1:43034839_T_TG:78,0,4180 6 43034856 . G C 49.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=86.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.54;ReadPosRankSum=-4.18;SOR=4.605 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,9:93:78:0|1:43034839_T_TG:78,0,4190 6 43109751 rs6905948 G A 8208.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.57;SOR=0.939 GT:AD:DP:GQ:PL 1/1:0,252:252:99:8237,756,0 6 43139541 . G T 4057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.522;ClippingRankSum=0;DP=312;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=-1.016;QD=13.05;ReadPosRankSum=1.494;SOR=0.629 GT:AD:DP:GQ:PL 0/1:152,159:311:99:4086,0,3800 6 43154091 rs941849 C G 7181.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,221:221:99:7210,663,0 6 43190135 rs62417521 C T 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=0.748;SOR=0.512 GT:AD:DP:GQ:PL 0/1:39,39:78:99:1069,0,959 6 43230970 rs3800294 G C 3974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.13;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=1.066;SOR=0.663 GT:AD:DP:GQ:PL 0/1:161,148:309:99:4003,0,4367 6 43270097 rs2651184 T C 6091.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6120,617,0 6 43270151 rs2270860 C T 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=1.944;SOR=0.608 GT:AD:DP:GQ:PL 0/1:65,71:136:99:1722,0,1741 6 43273604 rs2242416 A G 3361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.557;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.666;SOR=0.655 GT:AD:DP:GQ:PL 0/1:139,140:279:99:3390,0,3360 6 43306346 rs1459675 A G 5942.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5971,593,0 6 43307861 rs10948072 G A 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.124;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.827;SOR=0.695 GT:AD:DP:GQ:PL 0/1:86,63:149:99:1638,0,2284 6 43336771 rs9381238 C T 8331.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,257:257:99:8360,770,0 6 43399837 rs700008 A G 2650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.459;SOR=0.724 GT:AD:DP:GQ:PL 0/1:102,105:207:99:2679,0,2690 6 43401105 rs9394952 G A 2961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.335;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.014;SOR=0.69 GT:AD:DP:GQ:PL 0/1:160,128:288:99:2990,0,3670 6 43492578 rs2257082 G A 8319.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8348,844,0 6 43655533 . T TCGTAATTTTTTCTCAATATCCTTATTTTAAGATATAAGTTAGTACAATAATTACAGAGGCATAAGCCAAATGGGA 1516.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.48;ClippingRankSum=0;DP=181;ExcessHet=3.0103;FS=75.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-0.896;SOR=7.025 GT:AD:DP:GQ:PL 0/1:72,43:115:99:1554,0,29073 6 43970503 . C CGCGGCG 1506.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DP=218;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0;QD=8.76;ReadPosRankSum=1.939;SOR=0.456 GT:AD:DP:GQ:PL 0/1:97,75:179:99:1544,0,3738 6 43970602 rs117880737 G C 2994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=7.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=2.363;SOR=0.363 GT:AD:DP:GQ:PL 0/1:116,123:239:99:3023,0,2953 6 43970658 rs115402675 T A 3338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.624;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=1.334;SOR=0.702 GT:AD:DP:GQ:PL 0/1:114,137:251:99:3367,0,2898 6 43970719 rs146391418 G T 4400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.81;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.41;ReadPosRankSum=-0.873;SOR=0.71 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,115:239:99:0|1:43970719_G_T:4429,0,5303 6 43970720 rs138503303 C T 4400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.34;ReadPosRankSum=-1.008;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,116:240:99:0|1:43970719_G_T:4429,0,5303 6 44081718 rs6883 G A 2943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.505;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.324;SOR=0.726 GT:AD:DP:GQ:PL 0/1:134,121:255:99:2972,0,3309 6 44134581 rs914503 C T 650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=0.166;SOR=0.852 GT:AD:DP:GQ:PL 0/1:37,28:65:99:679,0,950 6 44140818 rs3813500 C G 2409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-0.585;SOR=0.693 GT:AD:DP:GQ:PL 0/1:91,91:182:99:2438,0,2480 6 44198362 rs45573936 T C 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.501;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16;ReadPosRankSum=0.868;SOR=0.778 GT:AD:DP:GQ:PL 0/1:43,54:97:99:1580,0,1279 6 44218120 rs13296 A G 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.173;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.534;MLEAC=1;MLEAF=0.5;MQ=59.67;MQRankSum=-1.86;QD=15.49;ReadPosRankSum=1.513;SOR=1.109 GT:AD:DP:GQ:PL 0/1:51,60:111:99:1748,0,1157 6 44233372 rs189481001 G A 2603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-1.221;SOR=0.641 GT:AD:DP:GQ:PL 0/1:125,119:244:99:2632,0,3063 6 44243559 rs3734710 A G 4059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.677;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.513;SOR=0.601 GT:AD:DP:GQ:PL 0/1:164,154:318:99:4088,0,3700 6 44247951 rs484757 T G 6590.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6619,642,0 6 44250165 rs516582 A G 3212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.253;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=-0.432;SOR=0.858 GT:AD:DP:GQ:PL 0/1:93,124:217:99:3241,0,2237 6 44253749 rs324143 A G 6776.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6805,657,0 6 44253765 rs2297336 A G 2587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.614;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.785;SOR=0.6 GT:AD:DP:GQ:PL 0/1:111,103:214:99:2616,0,2813 6 44255459 rs324146 G A 2761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.25;SOR=0.64 GT:AD:DP:GQ:PL 0/1:139,116:255:99:2790,0,3558 6 44268371 rs325008 T C 9231.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9260,956,0 6 44269023 rs325007 T C 4914.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4943,474,0 6 44269193 rs498512 C T 1515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.108;SOR=0.757 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1544,0,1587 6 44275011 rs324136 T C 9620.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,313:313:99:9649,938,0 6 44280812 rs167772 C T 3257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.469;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=14.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-1.415;SOR=1.369 GT:AD:DP:GQ:PL 0/1:156,125:281:99:3286,0,3972 6 44310854 rs10948132 G A 2378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.813;SOR=0.563 GT:AD:DP:GQ:PL 0/1:94,106:200:99:2407,0,2092 6 44320548 rs4714783 T A 1531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.456;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-0.116;SOR=0.902 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1560,0,1297 6 44361330 rs111990866 A C 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.781;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=1.006;SOR=0.678 GT:AD:DP:GQ:PL 0/1:41,43:84:99:1105,0,891 6 44371714 rs6934058 C T 1294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.716;SOR=0.675 GT:AD:DP:GQ:PL 0/1:65,54:119:99:1323,0,1596 6 44413463 rs2273666 T A 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.41;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.241;SOR=0.669 GT:AD:DP:GQ:PL 0/1:51,73:124:99:1694,0,1097 6 44900467 rs146594864 C T 1083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-1.361;SOR=1.088 GT:AD:DP:GQ:PL 0/1:58,48:106:99:1112,0,1320 6 45390511 rs6921145 G A 4240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=0.405;SOR=0.592 GT:AD:DP:GQ:PL 0/1:129,162:291:99:4269,0,3205 6 45909410 rs140116349 G A 861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.875;SOR=0.911 GT:AD:DP:GQ:PL 0/1:35,37:72:99:890,0,803 6 46107752 rs7451713 C G 3176.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3205,303,0 6 46129345 rs2235881 G A 2796.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2825,276,0 6 46135489 rs6926570 T C 3766.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.19;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3795,351,0 6 46135984 rs3806995 G T 2323.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2352,240,0 6 46563817 rs7761731 A T 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.806;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.553;SOR=0.919 GT:AD:DP:GQ:PL 0/1:60,47:107:99:1057,0,1391 6 46609905 rs2277119 C T 744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=0.494;SOR=0.766 GT:AD:DP:GQ:PL 0/1:47,34:81:99:773,0,1195 6 46623698 rs3757241 T C 4100.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4129,408,0 6 46656557 rs41273658 C T 3633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.599;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=4.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.79;SOR=0.832 GT:AD:DP:GQ:PL 0/1:192,148:340:99:3662,0,4675 6 46657057 rs3799277 A G 6646.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.23;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6675,600,0 6 46658905 rs9381472 C G 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.573;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.817;SOR=0.568 GT:AD:DP:GQ:PL 0/1:77,63:140:99:1733,0,2060 6 46672452 rs148052037 TAATC T 247.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.936;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=9.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.19;ReadPosRankSum=-1.799;SOR=2.712 GT:AD:DP:GQ:PL 0/1:31,9:40:99:285,0,1881 6 46672943 rs1051931 A G 2144.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2173,199,0 6 46684222 rs1805017 C T 698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.85;ReadPosRankSum=-0.132;SOR=0.756 GT:AD:DP:GQ:PL 0/1:67,35:102:99:727,0,1692 6 46726441 rs9395212 G C 4148.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.19;SOR=1.807 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4177,375,0 6 46726500 rs9472839 C A 2405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.058;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=1.249;SOR=0.815 GT:AD:DP:GQ:PL 0/1:115,107:222:99:2434,0,2622 6 46823695 rs657340 G A 1655.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.68;QD=29.05;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1684,171,0 6 46823805 rs58687946 A AG 2295.73 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.37;QD=35.32;SOR=1.646 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2333,197,0 6 46824448 rs643409 A G 1191.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.92;QD=32.21;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1220,111,0 6 46826508 rs613870 G A 4326.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4355,426,0 6 46826715 rs572248 T A 3892.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=30.41;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3921,384,0 6 46826844 rs571247 T C 3351.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3380,332,0 6 46826910 rs611779 G A 3263.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3292,321,0 6 46827073 rs547499 A G 3782.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=31.26;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3811,363,0 6 46827126 rs610856 C T 4049.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=31.15;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4078,390,0 6 46832813 rs614826 G A 3294.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3323,348,0 6 46834685 rs586024 G A 1787.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1816,179,0 6 46856100 rs678312 G A 2345.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2374,231,0 6 46988238 . CA C 46.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.73;ReadPosRankSum=0.543;SOR=0.711 GT:AD:DP:GQ:PL 0/1:52,12:74:84:84,0,1152 6 47563692 rs2039503 C T 2240.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2269,237,0 6 47646748 rs13212023 T C 1033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.143;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-1.191;SOR=0.519 GT:AD:DP:GQ:PL 0/1:56,45:101:99:1062,0,1427 6 47649265 rs17541107 T A 3325.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3354,335,0 6 47682604 rs9369738 A C 3829.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.01;ReadPosRankSum=-0.673;SOR=0.315 GT:AD:DP:GQ:PL 1/1:1,131:132:99:3858,355,0 6 47847179 rs3799276 A G 4584.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4613,431,0 6 47847401 rs2068006 A G 5252.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5281,501,0 6 47847683 rs9367307 A T 1700.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.38;SOR=1.716 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1729,201,0 6 47976361 rs61745530 G T 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.885;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-0.419;SOR=0.877 GT:AD:DP:GQ:PL 0/1:59,60:119:99:1502,0,1639 6 49403282 rs8589 T C 1904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.158;SOR=0.564 GT:AD:DP:GQ:PL 0/1:98,89:187:99:1933,0,2363 6 49412433 rs1141321 C T 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-2.359;SOR=0.859 GT:AD:DP:GQ:PL 0/1:54,59:113:99:1332,0,1264 6 49425521 rs2229384 C T 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=8.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.205;SOR=1.455 GT:AD:DP:GQ:PL 0/1:56,43:99:99:1058,0,1674 6 49439805 rs4267943 G A 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=6.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.08;SOR=0.626 GT:AD:DP:GQ:PL 0/1:65,77:142:99:1822,0,1470 6 49459978 rs2501968 A G 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.386;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=4.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.163;SOR=0.334 GT:AD:DP:GQ:PL 0/1:38,39:77:99:1002,0,912 6 49479775 rs1480615 A T 469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.69;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-0.092;SOR=0.693 GT:AD:DP:GQ:PL 0/1:19,19:38:99:498,0,469 6 49489397 rs9369905 C A 1340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.581;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.046;SOR=0.917 GT:AD:DP:GQ:PL 0/1:43,59:102:99:1369,0,889 6 49494241 rs9367359 A G 3955.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3984,404,0 6 49518914 rs6919674 C G 7014.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.25;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,199:199:99:7043,597,0 6 49676838 rs114507483 C G 999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-1.175;SOR=0.71 GT:AD:DP:GQ:PL 0/1:44,42:86:99:1028,0,1043 6 49701439 rs1864312 C A 3738.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3767,365,0 6 49701523 rs495335 A G 3412.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3441,350,0 6 50681817 rs35125047 CT C,CTT 794.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.091;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.982;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.476;SOR=0.465 GT:AD:DP:GQ:PL 1/2:21,35,20:117:99:832,122,543,613,0,1281 6 50683009 rs78648104 T C 3674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.991;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-0.199;SOR=0.822 GT:AD:DP:GQ:PL 0/1:138,143:281:99:3703,0,3201 6 51483961 rs9381994 T C 4268.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4297,405,0 6 51491884 rs4715227 T C 3075.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3104,329,0 6 51586771 rs9349593 G A 3866.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3895,375,0 6 51613177 rs765525 C T 3605.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3634,354,0 6 51618170 rs1326605 T G 2713.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2742,264,0 6 51720838 rs9349603 T C 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.49;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.147;SOR=0.727 GT:AD:DP:GQ:PL 0/1:33,31:64:99:785,0,821 6 51720872 rs7452724 A G 426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=3.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=1.409;SOR=0.2 GT:AD:DP:GQ:PL 0/1:19,16:35:99:455,0,619 6 51732807 rs12210295 C T 726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.982;SOR=0.631 GT:AD:DP:GQ:PL 0/1:40,34:74:99:755,0,962 6 51875250 rs2435322 A C 2149.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2178,219,0 6 51890823 rs9296669 G A 4295.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4324,425,0 6 51890852 rs9689306 C G 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=2.24;SOR=1.002 GT:AD:DP:GQ:PL 0/1:75,73:148:99:1832,0,2092 6 51914956 rs9370096 G A 4215.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4244,442,0 6 51924774 rs1896976 A G 2372.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2401,234,0 6 51930886 rs5876252 T TA 269.92 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.769;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=5.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-1.108;SOR=2.151 GT:AD:DP:GQ:PL 0/1:5,16:26:89:306,0,89 6 52101758 rs11465553 C T 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=0.601;SOR=0.68 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1495,0,1439 6 52268008 rs3748066 T G 1904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.947;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.391;SOR=0.47 GT:AD:DP:GQ:PL 0/1:71,82:153:99:1933,0,1714 6 52269046 rs3799274 C G 3197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.713;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.295;SOR=0.526 GT:AD:DP:GQ:PL 0/1:124,118:242:99:3226,0,3810 6 52288586 rs62407871 G C 875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.17;ReadPosRankSum=-0.226;SOR=0.61 GT:AD:DP:GQ:PL 0/1:17,34:51:99:904,0,367 6 52303291 rs3804506 C T 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.592;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=1.255;SOR=0.755 GT:AD:DP:GQ:PL 0/1:105,77:182:99:1714,0,2357 6 52303399 rs9349626 A G 1138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.553;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=4.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-2.143;SOR=1.195 GT:AD:DP:GQ:PL 0/1:49,46:95:99:1167,0,1176 6 52357071 rs17851770 A C 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.879;SOR=0.806 GT:AD:DP:GQ:PL 0/1:56,55:111:99:1239,0,1307 6 52617731 rs2180314 C G 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-1.465;SOR=0.705 GT:AD:DP:GQ:PL 0/1:76,68:144:99:1641,0,1890 6 52658962 rs1051775 T C 1945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=0.605;SOR=0.766 GT:AD:DP:GQ:PL 0/1:63,82:145:99:1974,0,1534 6 52701143 rs2397118 C T 3651.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=30.43;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3680,360,0 6 52878637 rs2297211 T C 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.726;SOR=0.609 GT:AD:DP:GQ:PL 0/1:102,86:188:99:2113,0,2556 6 52878654 rs33936662 C T 1964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.659;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.221;SOR=0.808 GT:AD:DP:GQ:PL 0/1:100,84:184:99:1993,0,2719 6 52993002 rs13200319 G A 879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=0.704;SOR=0.54 GT:AD:DP:GQ:PL 0/1:59,38:97:99:908,0,1575 6 52998856 rs2518573 T G 3482.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=1.115 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3511,366,0 6 53152642 rs6458913 G A 1148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=5.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.546;SOR=1.235 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1177,0,1172 6 53152758 rs6907982 A G 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.277;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.051;SOR=0.612 GT:AD:DP:GQ:PL 0/1:57,63:120:99:1442,0,1261 6 53409451 rs146955698 C CCCTCCT 1333.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.072;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.162;QD=14.5;ReadPosRankSum=1.433;SOR=0.948 GT:AD:DP:GQ:PL 0/1:56,36:99:99:1371,0,3301 6 53516876 rs6928338 T G 8879.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.89;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,270:270:99:8908,811,0 6 53519062 rs10948758 A G 5775.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5804,546,0 6 53519605 rs3799260 C T 4110.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4139,410,0 6 53519857 rs12210809 G A 3618.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3647,354,0 6 53520088 rs2038939 T C 1861.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1890,179,0 6 53989526 rs4712056 G A 7167.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7196,729,0 6 54054686 rs6934690 T A 1277.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1306,138,0 6 54079968 rs11757700 G A 3163.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.454 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3192,306,0 6 54735122 rs1472679 A G 1217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.942;SOR=0.804 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1246,0,1181 6 54805688 rs239798 A C 2061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.501;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-1.02;SOR=0.773 GT:AD:DP:GQ:PL 0/1:84,79:163:99:2090,0,2061 6 54806379 rs17678648 A G 2544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.064;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=-0.105;SOR=0.688 GT:AD:DP:GQ:PL 0/1:82,109:191:99:2573,0,2062 6 54806489 rs9475077 C A 1936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.498;SOR=0.65 GT:AD:DP:GQ:PL 0/1:92,81:173:99:1965,0,2279 6 55142337 rs2653349 A G 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.319;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.884;QD=10.75;ReadPosRankSum=0.25;SOR=0.781 GT:AD:DP:GQ:PL 0/1:64,52:116:99:1275,0,1587 6 55266625 rs9370418 T C 1191.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.48;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1220,134,0 6 55623922 . T TACAC 308.74 PASS AC=2;AF=1;AN=2;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.3;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,9:9:26:346,26,0 6 55639028 rs41271330 G A 1931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=4.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.58;ReadPosRankSum=-0.613;SOR=0.376 GT:AD:DP:GQ:PL 0/1:47,77:124:99:1960,0,1181 6 56044578 rs2038149 T C 4340.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.39;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4369,402,0 6 56327856 rs144012429 C T 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.133;SOR=0.728 GT:AD:DP:GQ:PL 0/1:47,43:90:99:966,0,1182 6 56346985 . T TCACACACACACACACACACACACA 1175.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.202;ClippingRankSum=0;DP=193;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0;QD=9.56;ReadPosRankSum=1.722;SOR=0.928 GT:AD:DP:GQ:PL 0/1:97,26:142:99:1213,0,4472 6 56417282 rs4715630 C T 6131.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6160,636,0 6 56417545 rs4715631 T C 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.573;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-2.008;SOR=0.728 GT:AD:DP:GQ:PL 0/1:97,72:169:99:1846,0,2339 6 56420158 rs62621210 C T 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.085;SOR=0.681 GT:AD:DP:GQ:PL 0/1:60,42:102:99:1031,0,1571 6 56420538 rs11756977 C T 2268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-1.983;SOR=0.67 GT:AD:DP:GQ:PL 0/1:90,97:187:99:2297,0,2149 6 56422322 rs201921834 AG A 470.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=-0.887;SOR=1.296 GT:AD:DP:GQ:PL 0/1:39,27:66:99:508,0,1280 6 56426931 rs9367689 C T 1804.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.94;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1833,201,0 6 56463410 rs4712138 T C 1890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.73;ReadPosRankSum=-0.602;SOR=0.948 GT:AD:DP:GQ:PL 0/1:36,77:113:99:1919,0,729 6 56468238 rs9370543 G A 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.966;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.402;SOR=0.622 GT:AD:DP:GQ:PL 0/1:58,41:99:99:1026,0,1539 6 56470551 rs13194995 T A 1482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.42;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-1.449;SOR=0.639 GT:AD:DP:GQ:PL 0/1:63,59:122:99:1511,0,1647 6 56470690 rs13209548 G A 3723.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3752,371,0 6 56471402 rs9382658 G A 4483.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4512,428,0 6 56471615 rs45442999 G A 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=1.094;SOR=0.608 GT:AD:DP:GQ:PL 0/1:51,66:117:99:1762,0,1372 6 56471995 rs16888055 C T 1370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-1.878;SOR=0.738 GT:AD:DP:GQ:PL 0/1:67,56:123:99:1399,0,1718 6 56480500 rs150191284 T C 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.585;SOR=0.542 GT:AD:DP:GQ:PL 0/1:59,58:117:99:1372,0,1547 6 56481632 rs115542549 T C 1997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=2.666;SOR=0.67 GT:AD:DP:GQ:PL 0/1:71,81:152:99:2026,0,1908 6 56482801 rs6459166 C G 3193.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.27;SOR=1.585 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3222,287,0 6 56484758 rs2230862 C T 4823.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4852,467,0 6 56494071 rs112640831 A G 1053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=5.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.865;SOR=1.149 GT:AD:DP:GQ:PL 0/1:40,46:86:99:1082,0,978 6 56505063 rs2144407 A G 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.905;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.402;SOR=0.725 GT:AD:DP:GQ:PL 0/1:75,61:136:99:1535,0,1784 6 56507489 rs1024196 A G 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.996;SOR=0.527 GT:AD:DP:GQ:PL 0/1:75,60:135:99:1486,0,1903 6 56515787 rs41267673 G A 921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.512;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=0.707;SOR=0.711 GT:AD:DP:GQ:PL 0/1:60,39:99:99:950,0,1456 6 56569104 rs16888128 A G 426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.053;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.77;ReadPosRankSum=-0.398;SOR=0.909 GT:AD:DP:GQ:PL 0/1:41,22:63:99:455,0,917 6 56911574 rs9382680 A G 1563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.979;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=17.025;MLEAC=1;MLEAF=0.5;MQ=52.87;MQRankSum=0.805;QD=7.48;ReadPosRankSum=-0.943;SOR=1.571 GT:AD:DP:GQ:PL 0/1:137,72:209:99:1592,0,3102 6 56917538 rs6926980 G A 833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=1.187;SOR=0.933 GT:AD:DP:GQ:PL 0/1:48,36:84:99:862,0,1287 6 56965696 rs3800023 C G 2324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=-0.257;SOR=0.558 GT:AD:DP:GQ:PL 0/1:78,93:171:99:2353,0,1985 6 57012930 rs3734738 C T 2188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-1.124;SOR=0.598 GT:AD:DP:GQ:PL 0/1:92,91:183:99:2217,0,2399 6 57393125 rs927192 A G 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=5.804;MLEAC=1;MLEAF=0.5;MQ=57.38;MQRankSum=-6.464;QD=12.14;ReadPosRankSum=0.232;SOR=0.396 GT:AD:DP:GQ:PL 0/1:75,82:157:99:1934,0,2394 6 57393144 rs3763183 A T 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.304;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=8.011;MLEAC=1;MLEAF=0.5;MQ=57.46;MQRankSum=4.095;QD=4.85;ReadPosRankSum=-0.825;SOR=1.339 GT:AD:DP:GQ:PL 0/1:119,44:163:99:819,0,4227 6 57393199 rs2397502 C A 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.5;MQ=56.94;MQRankSum=-6.781;QD=16.28;ReadPosRankSum=-0.84;SOR=0.829 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,65:132:99:0|1:57393199_C_A:2177,0,2570 6 57398264 rs62398998 A G 87.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.561;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=27.22;MLEAC=1;MLEAF=0.5;MQ=57.9;MQRankSum=-13.417;QD=0.48;ReadPosRankSum=-1.452;SOR=2.607 GT:AD:DP:GQ:PL 0/1:161,21:182:99:116,0,4145 6 57398335 rs4715745 A T 263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.5;MQ=56.06;MQRankSum=-10.158;QD=2.49;ReadPosRankSum=3.441;SOR=0.367 GT:AD:DP:GQ:PL 0/1:84,22:106:99:292,0,2234 6 57467100 rs4535533 G C 2621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=3.34;MLEAC=1;MLEAF=0.5;MQ=58.31;MQRankSum=-5.068;QD=9.53;ReadPosRankSum=0.917;SOR=0.891 GT:AD:DP:GQ:PL 0/1:157,118:275:99:2650,0,3904 6 57467175 rs4406234 A G 3082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.658;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=5.858;MLEAC=1;MLEAF=0.5;MQ=53.62;MQRankSum=-3.303;QD=9.57;ReadPosRankSum=-0.036;SOR=0.992 GT:AD:DP:GQ:PL 0/1:185,137:322:99:3111,0,4327 6 57512510 rs4294007 T G 2811.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.84;QD=30.23;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2840,278,0 6 62390916 rs1204114 T C 860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.155;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=1.137;SOR=0.689 GT:AD:DP:GQ:PL 0/1:61,42:103:99:889,0,1295 6 62442604 rs10484690 A G 632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.227;SOR=0.754 GT:AD:DP:GQ:PL 0/1:21,30:51:99:661,0,413 6 62887099 rs6921170 C T 568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=0.687;SOR=0.627 GT:AD:DP:GQ:PL 0/1:34,28:62:99:597,0,880 6 64498055 rs66462731 T A 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.482;SOR=0.767 GT:AD:DP:GQ:PL 0/1:52,45:97:99:1075,0,1267 6 64694354 rs4710457 C T 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.679;SOR=0.784 GT:AD:DP:GQ:PL 0/1:51,62:113:99:1317,0,1027 6 65016977 . TGAGA T,TGA 940.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=33.6;SOR=1.179 GT:AD:DP:GQ:PL 1/2:0,7,21:28:99:978,686,696,249,0,168 6 65301504 rs624851 A G 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.197;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-0.131;SOR=0.49 GT:AD:DP:GQ:PL 0/1:84,80:164:99:2107,0,2022 6 65336143 rs9445051 G A 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.517;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.12;ReadPosRankSum=-1.718;SOR=0.793 GT:AD:DP:GQ:PL 0/1:61,40:101:99:848,0,1395 6 65622463 rs9294631 A G 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.086;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=6.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=1.607;SOR=0.7 GT:AD:DP:GQ:PL 0/1:88,61:149:99:1440,0,2051 6 66063513 rs1936439 G A 1057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.7;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=4.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=-1.383;SOR=1.329 GT:AD:DP:GQ:PL 0/1:31,43:74:99:1086,0,767 6 66112409 rs974110 A G 161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.391;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.17;ReadPosRankSum=0.561;SOR=1.27 GT:AD:DP:GQ:PL 0/1:40,11:51:99:190,0,1064 6 69666684 rs1932618 A G 6924.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6953,688,0 6 69759148 rs618372 A T 1980.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2009,213,0 6 69772817 rs2793459 C G 2100.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2129,212,0 6 70071173 rs913543 G A 1965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-0.836;SOR=0.771 GT:AD:DP:GQ:PL 0/1:77,78:155:99:1994,0,2087 6 70778297 rs7349861 G A 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.989;SOR=0.813 GT:AD:DP:GQ:PL 0/1:44,40:84:99:827,0,1021 6 70778378 rs2224513 G C 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.64;ReadPosRankSum=-1.445;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,40:92:99:0|1:70778378_G_C:1467,0,2422 6 70778379 rs2224514 C T 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.81;ReadPosRankSum=-1.201;SOR=0.822 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,39:91:99:0|1:70778378_G_C:1467,0,2422 6 70812123 rs7772672 A G 3020.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3049,314,0 6 70856536 rs7762409 C T 506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.895;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=0.193;SOR=0.395 GT:AD:DP:GQ:PL 0/1:32,25:57:99:535,0,923 6 70866609 rs2229799 C T 518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.569;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.83;ReadPosRankSum=-1.121;SOR=0.859 GT:AD:DP:GQ:PL 0/1:51,25:76:99:547,0,1307 6 70897967 rs3828775 G A 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.12;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.539;SOR=0.741 GT:AD:DP:GQ:PL 0/1:106,87:193:99:2047,0,2781 6 70944285 rs2072650 C T 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.021;SOR=0.688 GT:AD:DP:GQ:PL 0/1:41,51:92:99:1119,0,929 6 70961833 rs1135056 T C 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=0.151;SOR=0.556 GT:AD:DP:GQ:PL 0/1:58,74:132:99:1741,0,1393 6 70981786 rs607156 A G 667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=1.307;SOR=0.557 GT:AD:DP:GQ:PL 0/1:34,31:65:99:696,0,857 6 70984436 rs592121 A G 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.381;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=6.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.4;ReadPosRankSum=2.174;SOR=1.34 GT:AD:DP:GQ:PL 0/1:51,25:76:99:591,0,1208 6 71569090 rs576516 T C 1131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.163;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=0.07;SOR=0.665 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1160,0,1474 6 71571694 . TA T 50.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.98;ReadPosRankSum=-1.472;SOR=0.408 GT:AD:DP:GQ:PL 0/1:41,11:56:88:88,0,974 6 71665986 rs1574490 G A 8507.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8536,879,0 6 71666146 rs1320315 T C 9973.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,310:310:99:10002,930,0 6 72006187 rs2273889 A T 749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=5.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.589;SOR=0.691 GT:AD:DP:GQ:PL 0/1:39,38:77:99:778,0,937 6 72011086 rs16880821 C T 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.79;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.82;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=1.259;SOR=0.498 GT:AD:DP:GQ:PL 0/1:42,47:89:99:1158,0,1062 6 72892257 rs2463730 A G 8467.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8496,833,0 6 72892383 rs114505309 G A 6562.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6591,637,0 6 72967952 rs41265493 G A 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=1.278;SOR=0.973 GT:AD:DP:GQ:PL 0/1:84,73:157:99:1473,0,2058 6 73332040 rs3734212 C G 3114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.822;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=4.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=1.686;SOR=0.552 GT:AD:DP:GQ:PL 0/1:120,128:248:99:3143,0,2831 6 73900338 rs12662818 A G 897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.786;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.32;ReadPosRankSum=-0.861;SOR=0.417 GT:AD:DP:GQ:PL 0/1:12,37:49:99:926,0,302 6 73904189 rs35791353 A G 1469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.666;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.905;SOR=0.929 GT:AD:DP:GQ:PL 0/1:62,57:119:99:1498,0,1423 6 73935135 rs6927398 G C 3018.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=1.261 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3047,297,0 6 73952109 rs76146370 C A 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.17;ReadPosRankSum=-0.616;SOR=0.95 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,64:144:99:0|1:73952103_A_C:2501,0,3252 6 73952112 rs79256439 G T 2564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.21;ReadPosRankSum=-0.538;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,66:149:99:0|1:73952103_A_C:2593,0,3440 6 73952113 rs74562538 G A 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.33;ReadPosRankSum=-0.109;SOR=0.838 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,67:153:99:0|1:73952103_A_C:2680,0,3428 6 73952118 rs6453661 A G 2716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.122;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.57;ReadPosRankSum=-1.513;SOR=0.915 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,76:164:99:0|1:73952103_A_C:2745,0,3469 6 74019338 rs16883571 G A 4886.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4915,488,0 6 74019376 rs16883573 T C 5033.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5062,480,0 6 74073531 rs561930 C G 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=-0.753;SOR=0.621 GT:AD:DP:GQ:PL 0/1:135,84:219:99:1913,0,3582 6 74079024 rs496530 A G 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-1.088;SOR=0.629 GT:AD:DP:GQ:PL 0/1:106,88:194:99:1940,0,2417 6 74079041 rs497243 A C 4799.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4828,499,0 6 74119084 rs4708053 T C 1998.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2027,213,0 6 74125875 rs311686 A G 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=1.147;SOR=0.817 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,27:69:99:0|1:74125875_A_G:997,0,2082 6 74125888 rs311685 A G 1008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=0.764;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,29:70:99:0|1:74125875_A_G:1037,0,2123 6 74135016 rs311678 C T 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.327;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.168;SOR=1.009 GT:AD:DP:GQ:PL 0/1:57,44:101:99:1180,0,1516 6 74155346 rs610913 G T 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.685;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=-0.408;SOR=0.662 GT:AD:DP:GQ:PL 0/1:61,46:107:99:1065,0,1412 6 74161503 rs9446904 A G 4740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.118;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=9.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=0.888;SOR=0.402 GT:AD:DP:GQ:PL 0/1:160,179:339:99:4769,0,4346 6 74161604 rs141133909 C T 6299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.838;ClippingRankSum=0;DB;DP=488;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=3.376;SOR=0.737 GT:AD:DP:GQ:PL 0/1:217,271:488:99:6328,0,5369 6 74161801 rs9352000 G T 3512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.64;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.262;SOR=0.56 GT:AD:DP:GQ:PL 0/1:162,147:309:99:3541,0,4348 6 74161855 rs147035222 G C 3623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=1.157;SOR=0.703 GT:AD:DP:GQ:PL 0/1:114,131:245:99:3652,0,2941 6 74189574 rs7766570 G A 2677.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2706,261,0 6 74228006 rs1874229 A G 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.589;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.669;SOR=0.659 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2192,0,2462 6 74229258 rs2073466 G T 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=0.47;SOR=0.869 GT:AD:DP:GQ:PL 0/1:52,34:86:99:803,0,1356 6 74354175 rs472294 C T 1443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.205;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.971;SOR=0.668 GT:AD:DP:GQ:PL 0/1:65,60:125:99:1472,0,1507 6 74466377 rs6453696 C T 1005.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.18;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1034,111,0 6 74493432 rs10455097 A C 1638.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1667,168,0 6 74497009 rs2351528 A G 817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=6.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.473;SOR=0.725 GT:AD:DP:GQ:PL 0/1:39,34:73:99:846,0,1060 6 74497152 rs5023688 G A 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.419;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=1.919;SOR=0.52 GT:AD:DP:GQ:PL 0/1:48,45:93:99:878,0,1257 6 74533192 rs2917887 T G 3658.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3687,374,0 6 75797302 rs970547 C T 5629.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5658,573,0 6 75841722 rs594012 A T 5941.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5970,620,0 6 75848181 rs240736 A G 3758.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.953;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.06;ReadPosRankSum=1.57;SOR=0.237 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3787,353,0 6 75890933 rs34433354 T TA 1406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.72;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=0.888;QD=18.76;ReadPosRankSum=-0.625;SOR=0.397 GT:AD:DP:GQ:PL 0/1:13,62:84:99:1435,0,105 6 75950109 rs56897555 T TA 423.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-0.862;SOR=0.358 GT:AD:DP:GQ:PL 0/1:9,24:40:99:461,0,130 6 75968720 rs147523 G A 1922.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.721 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1951,190,0 6 75994151 rs240374 A G 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.878;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.865;SOR=0.74 GT:AD:DP:GQ:PL 0/1:78,75:153:99:2058,0,2075 6 76024704 rs62415695 G A 1929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.552;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=4.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.184;SOR=1.091 GT:AD:DP:GQ:PL 0/1:68,75:143:99:1958,0,1666 6 76344431 rs17414086 C T 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.26;ReadPosRankSum=0.932;SOR=0.856 GT:AD:DP:GQ:PL 0/1:43,25:68:99:522,0,1038 6 76369054 rs507662 A G 2962.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2991,311,0 6 76376552 rs17414687 G A 1075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=5.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-0.039;SOR=1.225 GT:AD:DP:GQ:PL 0/1:66,49:115:99:1104,0,1592 6 76425288 rs9250 A G 1132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.012;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=1.339;SOR=0.859 GT:AD:DP:GQ:PL 0/1:39,43:82:99:1161,0,892 6 76545684 rs12210963 T C 374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.178;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=-0.236;SOR=0.777 GT:AD:DP:GQ:PL 0/1:24,20:44:99:403,0,714 6 76596728 rs2295936 C T 984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-1.349;SOR=0.455 GT:AD:DP:GQ:PL 0/1:39,42:81:99:1013,0,952 6 76604573 rs3798429 T G 1059.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1088,105,0 6 76624741 rs12606 C T 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.392;SOR=0.594 GT:AD:DP:GQ:PL 0/1:53,65:118:99:1528,0,1384 6 76633385 rs3778005 C T 692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=1.516;SOR=0.807 GT:AD:DP:GQ:PL 0/1:26,30:56:99:721,0,579 6 76660271 rs41312278 C T 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=3.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.621;SOR=1.031 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1480,0,1728 6 76660551 rs3734311 G C 1716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.86;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=1.944;SOR=0.769 GT:AD:DP:GQ:PL 0/1:83,63:146:99:1745,0,2212 6 76728583 rs377755519 TA T 351.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.026;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=4.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.45;ReadPosRankSum=-2.13;SOR=1.222 GT:AD:DP:GQ:PL 0/1:55,24:98:99:389,0,1238 6 78171941 rs6297 C T 1943.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1972,189,0 6 78172260 rs6296 C G 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-0.843;SOR=0.683 GT:AD:DP:GQ:PL 0/1:99,111:210:99:2948,0,2702 6 78172992 rs6298 G A 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.361;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.478;SOR=0.565 GT:AD:DP:GQ:PL 0/1:98,85:183:99:2097,0,2321 6 79692751 rs11547228 G A 2397.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2426,255,0 6 79708000 rs7747479 A C 2323.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2352,237,0 6 79918309 rs9341761 G A 2001.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.8;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2030,216,0 6 80626375 rs3812153 T C 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.208;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.017;SOR=0.786 GT:AD:DP:GQ:PL 0/1:82,88:170:99:2058,0,1850 6 80724312 rs239566 A G 1497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.725;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-0.479;SOR=1.13 GT:AD:DP:GQ:PL 0/1:57,54:111:99:1526,0,1422 6 80837253 rs9448894 G T 539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.89;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=6.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.6;ReadPosRankSum=-0.324;SOR=1.501 GT:AD:DP:GQ:PL 0/1:44,27:71:99:568,0,928 6 82461727 . A ACCGCCGAAGTCGCCG 9886.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.237;ClippingRankSum=0;DP=738;ExcessHet=3.0103;FS=1.499;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.75;ReadPosRankSum=-0.789;SOR=0.705 GT:AD:DP:GQ:PL 1/1:7,377:388:99:9924,877,0 6 83075914 rs700494 G A 1708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=4.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.921;SOR=1.051 GT:AD:DP:GQ:PL 0/1:99,75:174:99:1737,0,2349 6 83667045 rs7739323 C T 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.993;SOR=0.67 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1770,0,1925 6 83828724 rs2148010 G A 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.066;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=-1.589;SOR=0.629 GT:AD:DP:GQ:PL 0/1:57,55:112:99:1065,0,1394 6 83838673 rs4706980 G A 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.172;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=3.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.857;SOR=0.999 GT:AD:DP:GQ:PL 0/1:99,75:174:99:1823,0,2334 6 83842055 rs2307912 C CTCT 3071.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.405;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.84;ReadPosRankSum=2.999;SOR=0.824 GT:AD:DP:GQ:PL 0/1:83,80:163:99:3109,0,3301 6 83880167 rs473267 C T 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.763;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=13.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.699;SOR=1.911 GT:AD:DP:GQ:PL 0/1:52,38:90:99:1041,0,1273 6 83881740 rs542948 T C 800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=-0.403;SOR=0.668 GT:AD:DP:GQ:PL 0/1:50,37:87:99:829,0,1196 6 84108091 rs2230900 C T 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=0.415;SOR=0.889 GT:AD:DP:GQ:PL 0/1:33,44:77:99:1050,0,760 6 84233831 rs504593 G A 6535.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6564,662,0 6 84234144 rs3812141 C T 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=0.356;SOR=0.686 GT:AD:DP:GQ:PL 0/1:73,101:174:99:2597,0,1703 6 84300997 rs2273363 A G 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.158;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.41;SOR=0.779 GT:AD:DP:GQ:PL 0/1:35,39:74:99:901,0,771 6 84303342 rs1033655 T C 4547.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4576,443,0 6 84317533 rs7752421 A T 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.198;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=4.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=1.059;SOR=1.155 GT:AD:DP:GQ:PL 0/1:49,36:85:99:848,0,1086 6 84368819 rs11368249 TA T 378.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.3;QD=5.19;ReadPosRankSum=-1.049;SOR=0.433 GT:AD:DP:GQ:PL 0/1:47,26:76:99:416,0,976 6 84799185 rs2875382 C T 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.139;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.338;SOR=0.63 GT:AD:DP:GQ:PL 0/1:76,69:145:99:1640,0,2142 6 85473758 rs172562 C T 7394.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7423,719,0 6 86199233 rs2229523 A G 907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=3.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.277;SOR=0.377 GT:AD:DP:GQ:PL 0/1:52,41:93:99:936,0,1283 6 86199329 rs9450284 G C 733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.078;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=5.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=-0.465;SOR=1.352 GT:AD:DP:GQ:PL 0/1:52,33:85:99:762,0,1197 6 87953340 rs5878024 C CT 849.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.077;QD=7.66;ReadPosRankSum=0.309;SOR=0.644 GT:AD:DP:GQ:PL 0/1:63,48:119:99:887,0,1246 6 87969341 rs16878809 G A 2626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.358;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=1.65;SOR=0.694 GT:AD:DP:GQ:PL 0/1:92,103:195:99:2655,0,2132 6 87970301 rs3812132 C G 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-1.708;SOR=0.883 GT:AD:DP:GQ:PL 0/1:114,123:237:99:2902,0,2784 6 87994101 rs41273281 G A 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.602;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.229;SOR=0.64 GT:AD:DP:GQ:PL 0/1:88,79:167:99:1884,0,2094 6 87994550 rs41273283 G A 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.241;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=5.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=-0.745;SOR=0.517 GT:AD:DP:GQ:PL 0/1:94,68:162:99:1474,0,2207 6 87994572 rs4707358 G A 1432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.985;SOR=0.524 GT:AD:DP:GQ:PL 0/1:82,65:147:99:1461,0,2002 6 88046800 rs1048893 G A 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.766;SOR=0.836 GT:AD:DP:GQ:PL 0/1:73,79:152:99:1934,0,1912 6 88075122 rs9353482 C T 502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.076;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=7.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.335;SOR=2.015 GT:AD:DP:GQ:PL 0/1:19,20:39:99:531,0,491 6 88125542 rs61731441 G A 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.452;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=1.235;SOR=0.524 GT:AD:DP:GQ:PL 0/1:65,67:132:99:1546,0,1705 6 88126423 rs16879281 G C 977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=6.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=0.656;SOR=0.34 GT:AD:DP:GQ:PL 0/1:64,45:109:99:1006,0,1587 6 88140811 rs117649467 C A 1228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.072;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.452;SOR=0.445 GT:AD:DP:GQ:PL 0/1:75,55:130:99:1257,0,2160 6 88182704 rs9450704 G C 446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.067;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=-1.747;SOR=0.639 GT:AD:DP:GQ:PL 0/1:36,21:57:99:475,0,946 6 88239266 rs17850652 T C 666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.74;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=-1.899;SOR=0.993 GT:AD:DP:GQ:PL 0/1:50,31:81:99:695,0,1102 6 88315741 rs2307391 TA T 290.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.45;ReadPosRankSum=0.304;SOR=0.586 GT:AD:DP:GQ:PL 0/1:24,15:39:99:328,0,645 6 88331058 rs2307366 C T 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.25;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-1.148;SOR=0.306 GT:AD:DP:GQ:PL 0/1:30,28:58:99:630,0,833 6 88366708 rs2307373 C T 644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.378;SOR=0.903 GT:AD:DP:GQ:PL 0/1:28,29:57:99:673,0,677 6 88367635 rs2307377 A G 557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.561;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-0.295;SOR=0.602 GT:AD:DP:GQ:PL 0/1:18,24:42:99:586,0,361 6 89638988 . TA T 130.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.84;ReadPosRankSum=-0.975;SOR=0.754 GT:AD:DP:GQ:PL 0/1:34,12:56:99:168,0,714 6 89793894 rs1130809 G C 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.521;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=5.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-0.263;SOR=1.211 GT:AD:DP:GQ:PL 0/1:55,44:99:99:1076,0,1287 6 89814830 rs7753709 A G 4006.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=32.05;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4035,375,0 6 89888744 rs1796743 C T 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.072;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=-0.499;SOR=0.682 GT:AD:DP:GQ:PL 0/1:123,84:207:99:1941,0,3037 6 89907873 rs422751 G A 4470.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=28.12;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4499,476,0 6 89913209 rs4590242 C T 2427.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.35;SOR=1.101 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,56:56:99:1|1:89913209_C_T:2456,172,0 6 89913218 rs4445034 T A 2283.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.78;SOR=1.201 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,51:51:99:1|1:89913209_C_T:2312,157,0 6 89926966 rs12200969 T C 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.365;SOR=0.655 GT:AD:DP:GQ:PL 0/1:94,88:182:99:2115,0,2122 6 89967498 rs282129 G A 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.614;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=4.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.554;SOR=0.691 GT:AD:DP:GQ:PL 0/1:113,100:213:99:2322,0,2673 6 89981413 rs282117 T C 788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.35;SOR=0.954 GT:AD:DP:GQ:PL 0/1:33,33:66:99:817,0,925 6 90039670 rs10502 G C 1359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.501;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=1.683;SOR=0.697 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1388,0,1798 6 90047956 rs35213866 G A 477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.13;ReadPosRankSum=-1.781;SOR=0.551 GT:AD:DP:GQ:PL 0/1:51,27:78:99:506,0,1298 6 90315789 rs3748085 A G 4019.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4048,413,0 6 90333599 rs17292811 A G 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-1.422;SOR=0.802 GT:AD:DP:GQ:PL 0/1:82,93:175:99:2257,0,1907 6 90338816 rs200010448 G GT 1018.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=0.208;SOR=0.607 GT:AD:DP:GQ:PL 0/1:53,50:115:99:1056,0,1005 6 90338863 rs9353687 C T 1432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=1.666;SOR=0.75 GT:AD:DP:GQ:PL 0/1:80,70:150:99:1461,0,1806 6 90340276 rs3210511 G A 3424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.481;SOR=0.681 GT:AD:DP:GQ:PL 0/1:167,152:319:99:3453,0,4211 6 90340734 rs9344950 G A 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.827;SOR=0.742 GT:AD:DP:GQ:PL 0/1:78,80:158:99:1996,0,2038 6 90371202 rs9444701 G A 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.728;SOR=0.57 GT:AD:DP:GQ:PL 0/1:74,73:147:99:1572,0,1724 6 90390443 rs9353689 C A 2322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.047;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-2.162;SOR=0.606 GT:AD:DP:GQ:PL 0/1:102,99:201:99:2351,0,2361 6 90402482 rs9294445 G A 3267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.538;SOR=0.641 GT:AD:DP:GQ:PL 0/1:138,134:272:99:3296,0,3446 6 90402840 rs9351212 C G 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.168;SOR=0.693 GT:AD:DP:GQ:PL 0/1:75,75:150:99:1874,0,1881 6 90405306 rs9294446 T A 2693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=-0.087;SOR=0.91 GT:AD:DP:GQ:PL 0/1:78,110:188:99:2722,0,1834 6 90415764 rs7743484 A G 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-1.487;SOR=0.602 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1306,0,1194 6 90418262 rs2026634 C T 2202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.314;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.082;SOR=0.598 GT:AD:DP:GQ:PL 0/1:70,87:157:99:2231,0,1621 6 90432662 rs756363 C T 1183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.39;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=5.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=0.354;SOR=0.851 GT:AD:DP:GQ:PL 0/1:34,51:85:99:1212,0,754 6 90448092 rs4140446 C T 1659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.744;SOR=0.779 GT:AD:DP:GQ:PL 0/1:97,76:173:99:1688,0,2424 6 90455084 rs9359861 A G 2477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.164;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.825;SOR=0.642 GT:AD:DP:GQ:PL 0/1:91,107:198:99:2506,0,1845 6 90459454 rs4053618 G A 2162.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.576 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2191,207,0 6 90466121 rs12191172 T C 428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.278;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.64;ReadPosRankSum=-1.264;SOR=1.965 GT:AD:DP:GQ:PL 0/1:9,14:23:99:457,0,197 6 90482397 rs12110451 T C 2530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.292;SOR=0.703 GT:AD:DP:GQ:PL 0/1:97,113:210:99:2559,0,2288 6 90497589 rs4707569 A C 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.128;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.123;SOR=0.422 GT:AD:DP:GQ:PL 0/1:48,60:108:99:1404,0,1086 6 90500130 rs16882132 C T 1255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=0.699;SOR=0.75 GT:AD:DP:GQ:PL 0/1:70,56:126:99:1284,0,1788 6 90565242 rs369328 A G 275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.11;ReadPosRankSum=-0.644;SOR=0.432 GT:AD:DP:GQ:PL 0/1:20,14:34:99:304,0,494 6 90660319 rs9451298 T C 3277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.376;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-2.049;SOR=0.616 GT:AD:DP:GQ:PL 0/1:130,122:252:99:3306,0,3066 6 90661576 rs2236181 T C 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.56;SOR=0.632 GT:AD:DP:GQ:PL 0/1:76,73:149:99:1817,0,1874 6 93967851 rs345730 C T 4051.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4080,402,0 6 93982124 rs345713 A G 5244.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5273,528,0 6 96651740 rs3811069 A G 2544.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.05;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2573,229,0 6 97000341 . CT C 39.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.475;QD=0.47;ReadPosRankSum=-0.86;SOR=0.596 GT:AD:DP:GQ:PL 0/1:72,13:106:77:77,0,1744 6 97058574 rs2252816 G A 2870.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.902;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.14;ReadPosRankSum=-0.7;SOR=0.693 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2899,256,0 6 97339078 rs6684 A G 4133.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.98;SOR=0.78 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,94:94:99:1|1:97339078_A_G:4162,286,0 6 97339088 rs11402 C T 4363.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.21;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,101:101:99:1|1:97339078_A_G:4392,307,0 6 97339275 rs34213186 C CA 1348.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.38;MQRankSum=0.396;QD=24.08;ReadPosRankSum=-1.366;SOR=0.555 GT:AD:DP:GQ:PL 1/1:3,53:56:94:1386,94,0 6 97414949 rs35143662 C T 753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=5.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=-1.598;SOR=0.731 GT:AD:DP:GQ:PL 0/1:52,36:88:99:782,0,1242 6 97613163 rs1209290 T C 4426.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4455,434,0 6 97626374 rs1737145 A G 1868.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1897,177,0 6 97677118 rs9481410 G A 4083.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4112,414,0 6 97679540 rs34952523 GA G 1102.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.65;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;MQRankSum=0.361;QD=21.62;ReadPosRankSum=0.656;SOR=1.225 GT:AD:DP:GQ:PL 1/1:2,49:51:90:1140,90,0 6 97694582 rs5878470 A ATAG 1537.73 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.94;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1575,105,0 6 99283376 rs195860 T G 10710.8 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.66;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,309:309:99:10739,927,0 6 99771452 . T A 1851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.209;ClippingRankSum=0;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=0.033;SOR=0.669 GT:AD:DP:GQ:PL 0/1:119,86:205:99:1880,0,2702 6 99771540 rs221527 T C 3304.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.483 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3333,327,0 6 99781218 rs11757364 G A 1314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.576;SOR=0.723 GT:AD:DP:GQ:PL 0/1:76,61:137:99:1343,0,1803 6 99817601 rs4144164 A G 3374.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3403,330,0 6 99819379 rs6925344 T C 1790.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1819,170,0 6 99819482 rs75377761 T C 485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.969;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.399;SOR=0.532 GT:AD:DP:GQ:PL 0/1:18,21:39:99:514,0,381 6 99825348 rs11548336 T C 2710.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2739,282,0 6 99842056 rs9376137 C A 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.692;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=5.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.551;SOR=1.292 GT:AD:DP:GQ:PL 0/1:56,43:99:99:1075,0,1350 6 99883694 rs9402791 T C 748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.29;ReadPosRankSum=0.395;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL 0/1:78,41:119:99:0|1:99883694_T_C:777,0,1911 6 99883704 rs6570065 T C 4234.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.43;SOR=0.812 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,123:123:99:1|1:99883694_T_C:4263,372,0 6 99893938 rs4504482 T C 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-2.666;SOR=0.964 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1527,0,1704 6 99951750 rs6934692 G A 1948.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1977,195,0 6 99956560 rs7744845 T C 1876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.154;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.476;SOR=0.603 GT:AD:DP:GQ:PL 0/1:94,81:175:99:1905,0,2148 6 100957344 rs240768 T C 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.093;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-0.221;SOR=0.599 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1585,0,1863 6 100964147 rs240780 G C 5423.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5452,566,0 6 100964158 rs33988845 G A 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=1.194;SOR=0.75 GT:AD:DP:GQ:PL 0/1:94,99:193:99:2206,0,2037 6 100966006 rs3213542 C T 2070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.55;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=1.038;SOR=0.666 GT:AD:DP:GQ:PL 0/1:56,86:142:99:2099,0,1194 6 100988266 . G GA 69.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=7.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.32;ReadPosRankSum=0.074;SOR=1.797 GT:AD:DP:GQ:PL 0/1:41,12:62:99:107,0,870 6 101094554 rs239239 A G 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.651;SOR=0.649 GT:AD:DP:GQ:PL 0/1:79,79:158:99:1789,0,1825 6 101166095 rs41288423 G A 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.778;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=1.062;SOR=0.763 GT:AD:DP:GQ:PL 0/1:69,51:120:99:1238,0,1616 6 101215223 rs11345864 TA T 1994.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.191;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.655;MLEAC=2;MLEAF=1;MQ=60.81;MQRankSum=0.451;QD=24.03;ReadPosRankSum=-1.19;SOR=1.694 GT:AD:DP:GQ:PL 1/1:2,81:87:99:2032,203,0 6 101312097 rs846791 C T 2317.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.12;SOR=1.112 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,66:66:99:1|1:101312097_C_T:2346,198,0 6 101312104 rs705600 T C 565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-1.603;SOR=0.526 GT:AD:DP:GQ:PGT:PID:PL 0/1:34,28:62:99:0|1:101312097_C_T:594,0,845 6 102074242 rs56357508 A G 969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.789;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=4.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.6;SOR=1.148 GT:AD:DP:GQ:PL 0/1:47,40:87:99:998,0,1055 6 102134201 rs146795156 T C 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=6.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-2.114;SOR=0.975 GT:AD:DP:GQ:PL 0/1:46,53:99:99:1153,0,959 6 102247673 rs6922753 T C 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.129;SOR=0.68 GT:AD:DP:GQ:PL 0/1:47,53:100:99:1252,0,1068 6 102376517 rs2243355 G A 573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=-0.228;SOR=1.136 GT:AD:DP:GQ:PL 0/1:18,23:41:99:602,0,423 6 105192107 rs72218235 TAAC T 412.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=-1.419;SOR=0.512 GT:AD:DP:GQ:PL 0/1:18,12:30:99:450,0,854 6 105198267 rs7752614 A G 884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-2.078;SOR=0.734 GT:AD:DP:GQ:PL 0/1:35,37:72:99:913,0,853 6 105244526 rs6918700 A T 263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=0.063;SOR=0.628 GT:AD:DP:GQ:PL 0/1:18,13:31:99:292,0,447 6 105300262 rs10635352 C CAG 1033.73 PASS AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=43.07;SOR=1.519 GT:AD:DP:GQ:PL 1/1:0,24:24:72:1071,72,0 6 105307435 rs2499655 G A 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.39;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=-1.114;SOR=0.832 GT:AD:DP:GQ:PL 0/1:62,36:98:99:881,0,1531 6 105398391 rs200355166 CT C 48.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.79;ReadPosRankSum=-1.153;SOR=0.982 GT:AD:DP:GQ:PL 0/1:48,14:70:86:86,0,1082 6 105821449 rs9486069 A G 1433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.671;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=5.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-0.143;SOR=1.218 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1462,0,1453 6 105850712 rs880177 A G 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.162;SOR=0.638 GT:AD:DP:GQ:PL 0/1:68,62:130:99:1445,0,1705 6 106959961 rs4946759 A G 11933.8 PASS AC=2;AF=1;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,364:364:99:11962,1092,0 6 106959999 rs1340623 C G 11986.8 PASS AC=2;AF=1;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,371:371:99:12015,1113,0 6 106967185 rs1159148 A C 3148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.352;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.345;SOR=0.552 GT:AD:DP:GQ:PL 0/1:110,123:233:99:3177,0,2681 6 106967778 rs3747787 T C 2428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.793;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.482;SOR=0.777 GT:AD:DP:GQ:PL 0/1:107,94:201:99:2457,0,2835 6 106987370 rs783396 A C 4660.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4689,476,0 6 106992464 rs1799693 A G 3516.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3545,371,0 6 106992592 rs2247335 A T 2984.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3013,290,0 6 106999822 rs2297970 G A 2544.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2573,266,0 6 107001456 rs1770731 A T 824.77 PASS AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,26:26:78:853,78,0 6 107006347 rs4946763 T C 2440.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2469,225,0 6 107113715 rs2015205 G A 3773.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3802,402,0 6 107372242 rs3833659 GTTTTC G 897.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=0.847;SOR=0.642 GT:AD:DP:GQ:PL 0/1:36,25:61:99:935,0,2355 6 107391213 rs3814072 C T 3320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.8;SOR=0.766 GT:AD:DP:GQ:PL 0/1:149,142:291:99:3349,0,3528 6 107391396 rs3814073 G A 3171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=6.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=1.141;SOR=0.957 GT:AD:DP:GQ:PL 0/1:141,129:270:99:3200,0,3614 6 107420440 rs112889489 A AT 370.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.94;ReadPosRankSum=-0.391;SOR=0.876 GT:AD:DP:GQ:PL 0/1:51,24:80:99:408,0,1076 6 107956095 rs9486659 A G 4354.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=1.785 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4383,419,0 6 108026402 rs1546961 A C 2551.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2580,252,0 6 108026455 rs1546960 A G 3219.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3248,344,0 6 108042213 rs846977 G A 3652.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3681,369,0 6 108066144 rs6922304 A G 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.321;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.614;SOR=0.548 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1575,0,1702 6 108068003 rs6934505 C T 1720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.075;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.233;SOR=0.586 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1749,0,1922 6 108197874 rs35476278 C CAAA 466.5 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.308;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=1.191;QD=22.21;ReadPosRankSum=0.898;SOR=0.264 GT:AD:DP:GQ:PL 0/1:4,17:23:30:502,0,30 6 108222727 rs370485907 TA T 83.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.249;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.74;ReadPosRankSum=-0.887;SOR=0.955 GT:AD:DP:GQ:PL 0/1:36,12:53:99:121,0,854 6 108233929 rs675117 G A 1522.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,52:52:99:1|1:108233913_C_T:1551,155,0 6 108243115 rs142388422 T TGGG 841.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.04;ReadPosRankSum=-0.874;SOR=0.409 GT:AD:DP:GQ:PL 0/1:19,23:42:99:879,0,448 6 108243119 . GAAAAAC G 326.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.746;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.17;ReadPosRankSum=1.341;SOR=1.091 GT:AD:DP:GQ:PL 0/1:23,17:42:99:364,0,885 6 108243121 rs201981258 AAAAC A 210.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.14;ReadPosRankSum=-2.22;SOR=0.363 GT:AD:DP:GQ:PL 0/1:25,16:41:99:248,0,785 6 108243125 . C CGGGG 269.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.658;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.42;ReadPosRankSum=1.09;SOR=1.312 GT:AD:DP:GQ:PL 0/1:25,17:42:99:307,0,970 6 109703391 rs1885691 C T 5576.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5605,589,0 6 109752565 rs58424410 C CA 496.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=4.1;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=0.696;QD=16.02;ReadPosRankSum=-0.052;SOR=0.184 GT:AD:DP:GQ:PL 0/1:7,24:41:69:534,0,69 6 109764535 rs1476387 G T 4261.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4290,432,0 6 109767631 rs6149743 T TGTGGTCTGGTCAGTGACCTGCCCAGG 4853.73 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.36;SOR=2.606 GT:AD:DP:GQ:PL 1/1:0,107:107:99:4891,321,0 6 109767930 rs9320288 G T 6405.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.18;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,145:145:99:1|1:109767930_G_T:6434,442,0 6 109767931 rs59056467 C T 6405.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.88;SOR=0.778 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,146:146:99:1|1:109767930_G_T:6434,442,0 6 109768295 rs910730 G A 6256.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6285,606,0 6 109770999 rs752262 G C 6041.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6070,597,0 6 109775436 rs2277113 T C 4575.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.298 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4604,443,0 6 109827716 rs2277114 C T 3320.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3349,327,0 6 109837859 rs10872035 T C 2094.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=1.793 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2123,197,0 6 109850199 rs72331392 AAC A 966.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0;QD=15.34;ReadPosRankSum=-1.667;SOR=1.035 GT:AD:DP:GQ:PL 0/1:11,52:63:65:1004,0,65 6 109863238 rs9386812 A C 2453.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.61;SOR=1.34 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2482,219,0 6 109885475 rs10499052 G A 2728.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=1.455 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2757,264,0 6 109906329 rs71770197 GCTT G 1156.73 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.67;QD=41.31;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,28:28:84:1194,84,0 6 109954252 rs1406957 C T 4378.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4407,414,0 6 110053824 rs11377100 G GT 687.73 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.29;QD=28.66;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,24:36:64:662,64,0 6 110059510 rs2273752 C A 1154.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=2.012 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1183,111,0 6 110106234 rs10499054 A G 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.496;SOR=0.593 GT:AD:DP:GQ:PL 0/1:17,22:39:99:522,0,384 6 110107517 rs9885672 T C 1512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.91;ReadPosRankSum=-2.1;SOR=1.009 GT:AD:DP:GQ:PL 0/1:21,59:80:99:1541,0,384 6 110113765 rs201752617 T TC 551.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.751;QD=14.91;ReadPosRankSum=1.591;SOR=0.306 GT:AD:DP:GQ:PL 0/1:12,25:37:99:589,0,304 6 110146303 rs1127771 G A 2392.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2421,240,0 6 110536489 rs138462889 C G 521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.03;ReadPosRankSum=0.832;SOR=0.792 GT:AD:DP:GQ:PL 0/1:39,26:65:99:550,0,1029 6 110679413 rs62435951 A G 1220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=2.04;SOR=0.573 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1249,0,1125 6 110714205 rs35697832 C T 3682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-0.171;SOR=0.703 GT:AD:DP:GQ:PL 0/1:123,156:279:99:3711,0,2910 6 110763875 rs723685 A G 2007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.107;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=1.248;SOR=0.671 GT:AD:DP:GQ:PL 0/1:66,80:146:99:2036,0,1606 6 110777962 rs6907567 A G 2497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.586;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=0.258;SOR=1.005 GT:AD:DP:GQ:PL 0/1:82,91:173:99:2526,0,1875 6 110778128 rs714368 T C 2853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.706;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=1.007;SOR=0.809 GT:AD:DP:GQ:PL 0/1:90,115:205:99:2882,0,2037 6 110797703 rs150666553 CCGCGGG C 4057.73 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.59;SOR=1.204 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,89:89:99:1|1:110797703_CCGCGGG_C:4095,274,0 6 110797713 . C CCACCCCT 4057.73 PASS AC=2;AF=1;AN=2;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=1.255 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,91:91:99:1|1:110797703_CCGCGGG_C:4095,274,0 6 110988795 rs9386933 A T 604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.4;ReadPosRankSum=2.383;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,16:27:99:0|1:110988795_A_T:633,0,582 6 110988796 rs9398242 C A 604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.4;ReadPosRankSum=2.383;SOR=0.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,16:27:99:0|1:110988795_A_T:633,0,582 6 111213927 rs34637914 T TC 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.568;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-1.546;SOR=1.15 GT:AD:DP:GQ:PL 0/1:42,47:90:99:1097,0,964 6 111283592 rs9374227 C T 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.79;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.901;SOR=0.789 GT:AD:DP:GQ:PL 0/1:26,30:56:99:697,0,543 6 111283718 rs9374228 A C 448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-1.28;SOR=0.889 GT:AD:DP:GQ:PL 0/1:21,21:42:99:477,0,493 6 111329221 rs35637912 CT C 104.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.061;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.36;ReadPosRankSum=0.768;SOR=1.061 GT:AD:DP:GQ:PL 0/1:13,11:29:99:142,0,321 6 111587266 rs11153279 T C 4265.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4294,399,0 6 111695073 rs455645 C T 4176.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4205,434,0 6 111695268 rs455732 C T 4491.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4520,449,0 6 111695887 rs462779 G A 4306.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4335,433,0 6 111696257 rs461646 G A 4087.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4116,384,0 6 111696852 rs458486 T C 4066.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.02;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4095,381,0 6 111901453 rs1043730 G T 6657.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6686,648,0 6 112382313 rs1230345 G T 3056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.026;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=1.322;SOR=0.771 GT:AD:DP:GQ:PL 0/1:176,132:308:99:3085,0,4457 6 112390565 rs17219737 A G 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.5;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=1.28;SOR=0.864 GT:AD:DP:GQ:PL 0/1:59,65:124:99:1689,0,1486 6 112393287 rs369915083 TA T 34.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.394;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.61;ReadPosRankSum=-1.301;SOR=1.286 GT:AD:DP:GQ:PL 0/1:47,10:59:72:72,0,1144 6 112408610 rs6568714 T C 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=2.017;SOR=0.734 GT:AD:DP:GQ:PL 0/1:62,76:138:99:1893,0,1399 6 112435264 rs3734290 T G 2176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.77;ReadPosRankSum=2.758;SOR=0.882 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,56:100:99:0|1:112435264_T_G:2205,0,2226 6 112435273 rs3734289 A C 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.65;ReadPosRankSum=3.224;SOR=0.882 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,58:108:99:0|1:112435264_T_G:2258,0,2351 6 112435912 rs1050353 A T 1128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=4.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.046;SOR=0.958 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1157,0,1094 6 112457383 rs1050349 G C 1721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.157;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.383;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=-1.505;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,48:121:99:0|1:112457383_G_C:1750,0,2965 6 112457390 rs2032567 C T 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.882;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-1.198;SOR=0.779 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,48:123:99:0|1:112457383_G_C:1741,0,2983 6 112457471 rs2032568 G A 670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.803;SOR=0.701 GT:AD:DP:GQ:PL 0/1:34,29:63:99:699,0,949 6 112460365 rs41289902 C T 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.349;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=2.004;SOR=0.486 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1471,0,1915 6 112493872 rs1050348 A G 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.871;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.906;SOR=0.73 GT:AD:DP:GQ:PL 0/1:65,62:127:99:1562,0,1605 6 112508769 rs9387061 T G 6530.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.73;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,146:146:99:1|1:112508769_T_G:6559,439,0 6 112508770 rs9400522 G T 6530.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.73;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,146:146:99:1|1:112508769_T_G:6559,439,0 6 112671611 rs11153361 G A 4758.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4787,489,0 6 114265587 rs13204445 T C 662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=6.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=-0.93;SOR=0.256 GT:AD:DP:GQ:PL 0/1:35,32:67:99:691,0,891 6 114378970 rs2282237 C T 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=4.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=1.884;SOR=0.784 GT:AD:DP:GQ:PL 0/1:63,62:125:99:1563,0,1687 6 116264354 rs550480 C A 2663.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.965;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.075;MLEAC=2;MLEAF=1;MQ=60.12;MQRankSum=0.21;QD=28.95;ReadPosRankSum=1.338;SOR=1.014 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2692,266,0 6 116325142 rs3756772 C T 2365.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2394,234,0 6 116427506 rs201136700 CTT C,CT 905.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=2.717;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.37;MQRankSum=0.412;QD=19.27;ReadPosRankSum=1.375;SOR=0.446 GT:AD:DP:GQ:PL 1/2:3,11,33:52:99:943,560,618,222,0,135 6 116441229 rs111661664 T TGGG 4511.73 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=45.12;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,100:100:99:4549,307,0 6 116446593 . G A 1763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.778;ClippingRankSum=0;DP=143;ExcessHet=3.0103;FS=8.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.238;SOR=1.359 GT:AD:DP:GQ:PL 0/1:71,72:143:99:1792,0,1678 6 116574455 rs2232472 G A 6630.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6659,650,0 6 116575083 rs2232470 C A 8187.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8216,789,0 6 116599665 rs9400897 T C 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.048;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-0.234;SOR=0.54 GT:AD:DP:GQ:PL 0/1:83,82:165:99:2163,0,2121 6 116600465 rs78371471 T TCAC 8792.73 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.56;SOR=1.366 GT:AD:DP:GQ:PL 1/1:0,193:193:99:8830,598,0 6 116600774 rs3749895 C G 11761.8 PASS AC=2;AF=1;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.95;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,357:357:99:11790,1071,0 6 116600810 rs3828743 G A 11013.8 PASS AC=2;AF=1;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,360:360:99:11042,1079,0 6 116757557 rs560644 T C 7362.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7391,722,0 6 116783330 rs1057192 G A 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.201;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-1.736;SOR=0.547 GT:AD:DP:GQ:PL 0/1:114,80:194:99:2002,0,3127 6 116783390 rs10784 A G 7420.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7449,749,0 6 116784850 rs41289932 C G 967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.185;SOR=0.706 GT:AD:DP:GQ:PL 0/1:54,41:95:99:996,0,1438 6 116875427 rs7762318 G A 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.813;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=3.433;SOR=0.92 GT:AD:DP:GQ:PL 0/1:95,87:182:99:2150,0,2201 6 116875504 rs12660180 A G 1879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.213;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.54;ReadPosRankSum=-0.785;SOR=0.77 GT:AD:DP:GQ:PL 0/1:56,65:121:99:1908,0,1337 6 116938232 rs13213314 C G 2419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.632;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22;ReadPosRankSum=-0.637;SOR=1.15 GT:AD:DP:GQ:PL 0/1:36,74:110:99:2448,0,1067 6 116950833 rs784133 T C 3191.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3220,309,0 6 117045491 rs2243368 T C 378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.181;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=-0.216;SOR=0.869 GT:AD:DP:GQ:PL 0/1:25,16:41:99:407,0,656 6 117073874 rs10556522 AATAT A 341.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.231;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=0.912;QD=18.99;ReadPosRankSum=0;SOR=0.346 GT:AD:DP:GQ:PL 0/1:7,11:18:99:379,0,327 6 117083132 rs17078309 A C 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.154;SOR=0.862 GT:AD:DP:GQ:PL 0/1:41,40:81:99:982,0,967 6 117113315 rs41290852 G A 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=5.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=2.058;SOR=0.31 GT:AD:DP:GQ:PL 0/1:45,44:89:99:1084,0,1166 6 117113761 . A AGG 2729.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.205;ClippingRankSum=0;DP=138;ExcessHet=3.0103;FS=5.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.78;ReadPosRankSum=0.251;SOR=1.109 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,68:138:99:0|1:117113761_A_AGG:2767,0,4136 6 117113762 . T TA 2726.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DP=141;ExcessHet=3.0103;FS=5.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.34;ReadPosRankSum=-0.113;SOR=1.121 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,71:141:99:0|1:117113761_A_AGG:2764,0,4179 6 117113765 rs111974433 T TTCC 2810.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.951;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.93;ReadPosRankSum=0.202;SOR=0.986 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,70:141:99:0|1:117113761_A_AGG:2848,0,4174 6 117114403 rs6901971 G A 1019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.483;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.149;SOR=0.678 GT:AD:DP:GQ:PL 0/1:47,44:91:99:1048,0,1370 6 117121894 rs6917467 G A 2468.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2497,261,0 6 117130704 rs2274911 G A 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.168;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=0.609;SOR=0.608 GT:AD:DP:GQ:PL 0/1:51,38:89:99:928,0,1216 6 117150008 rs6907580 G A 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=0.03;SOR=0.836 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1150,0,1208 6 117591755 rs13194610 T C 4163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0;DB;DP=371;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.609;SOR=0.621 GT:AD:DP:GQ:PL 0/1:186,185:371:99:4192,0,4252 6 117622184 rs619203 G C 2079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.441;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=5.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.05;ReadPosRankSum=0.302;SOR=1.162 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,53:122:99:0|1:117622184_G_C:2108,0,3252 6 117622188 rs529156 T G 2114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.269;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=4.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.33;ReadPosRankSum=-1.261;SOR=1.1 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,57:122:99:0|1:117622184_G_C:2143,0,3218 6 117622233 rs529038 C T 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=4.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.142;SOR=0.586 GT:AD:DP:GQ:PL 0/1:59,53:112:99:1277,0,1469 6 117631463 rs71554877 T TTAA 2340.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.741;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.773;MLEAC=2;MLEAF=1;MQ=60.63;MQRankSum=0.482;QD=40.36;ReadPosRankSum=1.13;SOR=1.781 GT:AD:DP:GQ:PL 1/1:2,56:58:84:2378,84,0 6 117678083 rs2243384 A G 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.65;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=1.034;SOR=0.746 GT:AD:DP:GQ:PL 0/1:44,43:87:99:1159,0,993 6 117683821 rs2229079 G A 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.996;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-1.262;SOR=0.907 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1387,0,1579 6 117686840 rs2229078 T C 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=1.198;SOR=0.594 GT:AD:DP:GQ:PL 0/1:40,31:71:99:784,0,1096 6 117725448 rs1998206 T G 672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.04;QD=13.46;ReadPosRankSum=-0.417;SOR=0.49 GT:AD:DP:GQ:PL 0/1:25,25:50:99:701,0,640 6 117725578 rs2243378 T A 3482.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3511,385,0 6 117730819 rs2273601 G A 805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.18;SOR=0.801 GT:AD:DP:GQ:PL 0/1:42,37:79:99:834,0,952 6 117842759 rs68145844 CTG C 1261.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.77;ReadPosRankSum=-1.476;SOR=1.052 GT:AD:DP:GQ:PL 0/1:37,34:71:99:1299,0,1416 6 117869491 rs210621 G A 11138.8 PASS AC=2;AF=1;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,372:372:99:11167,1114,0 6 117996818 rs9767451 T C 2153.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.74;QD=29.1;SOR=2.062 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2182,221,0 6 118475798 rs205966 G A 1583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.012;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=4.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.373;SOR=1.127 GT:AD:DP:GQ:PL 0/1:57,66:123:99:1612,0,1359 6 118886961 rs3734382 G T 1592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.534;SOR=0.557 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1621,0,1614 6 118973953 rs9489486 A G 505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.735;SOR=0.502 GT:AD:DP:GQ:PL 0/1:18,23:41:99:534,0,411 6 119136759 rs65685 A C 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=1.143;SOR=0.88 GT:AD:DP:GQ:PL 0/1:73,89:162:99:2110,0,1717 6 119137011 rs35917528 G A 1903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-1.75;SOR=0.624 GT:AD:DP:GQ:PL 0/1:107,85:192:99:1932,0,2754 6 119149149 rs284921 C G 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.327;SOR=0.628 GT:AD:DP:GQ:PL 0/1:109,101:210:99:2296,0,2600 6 119296378 rs200247036 T TA 322.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.758;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=9.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.33;ReadPosRankSum=-1.673;SOR=2.35 GT:AD:DP:GQ:PL 0/1:24,20:48:99:360,0,476 6 119327632 rs17827619 C T 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-0.23;SOR=0.485 GT:AD:DP:GQ:PL 0/1:48,67:115:99:1521,0,1081 6 119501601 rs35129454 T TAA 181.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.283;ClippingRankSum=0;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.302;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,6:17:99:0|1:119501601_T_TAA:219,0,770 6 119510941 rs2072890 C A 5190.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5219,528,0 6 121562641 rs191814118 C T 1163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=0.26;SOR=0.65 GT:AD:DP:GQ:PL 0/1:70,58:128:99:1192,0,1740 6 121577370 rs7745023 T C 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=0.221;SOR=0.595 GT:AD:DP:GQ:PL 0/1:88,65:153:99:1507,0,2105 6 121620608 rs9387944 G T 1164.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1193,117,0 6 121629167 rs9398629 G A 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.55;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=7.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.731;SOR=0.909 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1170,0,1737 6 121632008 rs9372653 T A 1417.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1446,150,0 6 123539904 rs7754205 C T 1080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.344;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=7.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-1.877;SOR=1.363 GT:AD:DP:GQ:PL 0/1:69,46:115:99:1109,0,1787 6 123581789 rs11373802 G GA 124.27 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=13.81;ReadPosRankSum=-0.66;SOR=1.402 GT:AD:DP:GQ:PL 0/1:2,7:11:13:158,0,13 6 123594510 rs147062785 T TA 399.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.38;ReadPosRankSum=-1.037;SOR=1.134 GT:AD:DP:GQ:PL 0/1:7,16:23:99:437,0,139 6 123658825 rs9401658 G T 434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=0.159;SOR=0.899 GT:AD:DP:GQ:PL 0/1:25,21:46:99:463,0,648 6 123687288 rs2873479 A C 1826.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.54;ReadPosRankSum=-0.412;SOR=0.362 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1855,182,0 6 123699042 rs6901953 T C 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=5.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=1.171;SOR=0.278 GT:AD:DP:GQ:PL 0/1:33,27:60:99:646,0,887 6 123702499 rs3813328 G A 963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.539;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-0.276;SOR=0.696 GT:AD:DP:GQ:PL 0/1:48,46:94:99:992,0,979 6 123833457 rs6902416 G C 1971.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2000,201,0 6 123869607 rs9490809 G C 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.898;SOR=0.492 GT:AD:DP:GQ:PL 0/1:74,53:127:99:1222,0,1907 6 123869769 rs9331652 TA T 615.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0.828;QD=12.57;ReadPosRankSum=1.982;SOR=0.398 GT:AD:DP:GQ:PL 0/1:21,28:86:99:653,0,381 6 125144352 rs2025251 T G 467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.641;SOR=1.23 GT:AD:DP:GQ:PL 0/1:20,21:41:99:496,0,449 6 125284457 rs9401790 T C 7572.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7601,741,0 6 126075709 rs5879793 AT A 963.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;MQRankSum=0.309;QD=22.41;ReadPosRankSum=1.416;SOR=0.39 GT:AD:DP:GQ:PL 1/1:1,42:49:99:1001,119,0 6 126210395 rs6919947 T G 3140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.75;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.17;ReadPosRankSum=0.74;SOR=0.719 GT:AD:DP:GQ:PL 0/1:95,112:207:99:3169,0,2306 6 126278230 rs2295005 G C 3609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.396;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=1.479;SOR=0.608 GT:AD:DP:GQ:PL 0/1:111,142:253:99:3638,0,2955 6 126288023 rs3757212 T C 2167.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2196,219,0 6 126667415 rs146477102 C T 678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.193;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=-0.388;SOR=0.735 GT:AD:DP:GQ:PL 0/1:53,34:87:99:707,0,1256 6 127476516 rs1892172 G A 5320.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5349,543,0 6 127767954 rs139745911 G A 4573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=1.621;SOR=0.724 GT:AD:DP:GQ:PL 0/1:161,192:353:99:4602,0,3876 6 127768762 rs6902288 G A 2666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=1.803;SOR=0.818 GT:AD:DP:GQ:PL 0/1:155,115:270:99:2695,0,3918 6 127771452 rs3734447 T G 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=1.019;SOR=0.756 GT:AD:DP:GQ:PL 0/1:125,107:232:99:2680,0,3123 6 128040839 rs675531 T C 4027.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4056,393,0 6 128312033 rs12055782 A G 395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.039;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=6.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-1.821;SOR=2.093 GT:AD:DP:GQ:PL 0/1:20,13:35:99:424,0,502 6 128330423 . TA T 35.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.069;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.47;ReadPosRankSum=0.46;SOR=0.899 GT:AD:DP:GQ:PL 0/1:64,12:82:73:73,0,1566 6 128388799 rs35030557 G T 3032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.88;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.507;SOR=0.708 GT:AD:DP:GQ:PL 0/1:116,133:249:99:3061,0,2798 6 128403745 rs17828130 A G 3604.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3633,342,0 6 129371106 rs1140366 C T 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.132;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=0.824;SOR=0.811 GT:AD:DP:GQ:PL 0/1:46,57:103:99:1480,0,1086 6 129381026 rs4404787 C A 2010.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.17;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2039,221,0 6 129807629 rs2229848 C T 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.693;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.765;SOR=0.862 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1383,0,1518 6 129807699 rs2229849 G C 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.4;SOR=0.7 GT:AD:DP:GQ:PL 0/1:76,86:162:99:1845,0,1852 6 129807714 rs2229850 G A 1681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.908;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=0.175;SOR=0.864 GT:AD:DP:GQ:PL 0/1:83,75:158:99:1710,0,1846 6 129927014 rs3813366 A G 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.523;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.882;SOR=1.171 GT:AD:DP:GQ:PL 0/1:41,39:80:99:917,0,896 6 129929209 . GAAAAA G 135.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=0.076;SOR=0.551 GT:AD:DP:GQ:PL 0/1:11,6:33:99:173,0,908 6 129937456 rs12524078 A G 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-1.103;SOR=0.502 GT:AD:DP:GQ:PL 0/1:49,54:103:99:1222,0,1064 6 130031215 rs3752536 T C 4440.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4469,431,0 6 130152479 rs7758540 T C 958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=2.452;SOR=0.608 GT:AD:DP:GQ:PL 0/1:43,43:86:99:987,0,1029 6 130152520 rs7776426 A C 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.811;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.059;SOR=0.724 GT:AD:DP:GQ:PL 0/1:48,40:88:99:918,0,1078 6 130154686 rs4629709 A G 1667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=4.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=1.4;SOR=0.813 GT:AD:DP:GQ:PL 0/1:74,74:148:99:1696,0,1694 6 130164764 rs9321190 G A 616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.424;SOR=0.622 GT:AD:DP:GQ:PL 0/1:32,28:60:99:645,0,820 6 130374102 rs9388768 C A 1340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.962;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=4.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=0.398;SOR=1.03 GT:AD:DP:GQ:PL 0/1:82,61:143:99:1369,0,1891 6 130381246 rs7451021 T C 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.054;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=0.485;SOR=0.582 GT:AD:DP:GQ:PL 0/1:49,42:91:99:921,0,1111 6 130537005 rs2326951 G A 685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=0.256;SOR=1.109 GT:AD:DP:GQ:PL 0/1:30,32:62:99:714,0,793 6 130761855 rs79097063 A T 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.971;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=4.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.327;SOR=0.764 GT:AD:DP:GQ:PL 0/1:109,87:196:99:2094,0,2676 6 131148541 rs4895897 A G 2581.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.1;SOR=1.58 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2610,234,0 6 131148737 rs1044303 G A 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=6.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=1.166;SOR=0.378 GT:AD:DP:GQ:PL 0/1:96,77:173:99:1689,0,2406 6 131156102 rs6975 G T 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.406;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.19;SOR=0.857 GT:AD:DP:GQ:PL 0/1:47,32:79:99:761,0,1102 6 131179302 rs61731767 C G 1479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-1.47;SOR=0.8 GT:AD:DP:GQ:PL 0/1:90,67:157:99:1508,0,2205 6 131184770 rs915172 T G 641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-1.623;SOR=0.582 GT:AD:DP:GQ:PL 0/1:32,30:62:99:670,0,770 6 131190838 rs17059736 G A 2783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.818;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.01;SOR=0.734 GT:AD:DP:GQ:PL 0/1:109,115:224:99:2812,0,2510 6 131211614 rs35374139 AG A 296.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-0.549;QD=2.41;ReadPosRankSum=1.623;SOR=0.589 GT:AD:DP:GQ:PL 0/1:93,30:123:99:334,0,2291 6 131211616 rs140909070 GA G 462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.571;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.913;QD=5.38;ReadPosRankSum=-1.673;SOR=1.021 GT:AD:DP:GQ:PL 0/1:48,38:108:99:491,0,1513 6 131276466 rs34763200 GA G 2254.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.121;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.51;ReadPosRankSum=0.11;SOR=0.514 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,59:92:99:0|1:131276466_GA_G:2292,0,669 6 131276473 rs45550834 A G 1604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.496;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.44;ReadPosRankSum=-0.322;SOR=0.584 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,57:92:99:0|1:131276466_GA_G:1633,0,1757 6 131520655 rs1190788 G A 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.225;SOR=0.762 GT:AD:DP:GQ:PL 0/1:74,68:142:99:1410,0,1737 6 132043349 rs378697 A T 683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.673;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=6.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=-0.421;SOR=1.41 GT:AD:DP:GQ:PL 0/1:50,32:82:99:712,0,1191 6 132168996 . G GGT 368.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=1.409;QD=8.99;ReadPosRankSum=-0.173;SOR=0.839 GT:AD:DP:GQ:PL 0/1:21,20:55:99:406,0,576 6 132271952 rs7451102 G C 7524.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.33;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,166:166:99:7553,515,0 6 132271959 rs12206231 T G 7339.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,164:166:99:7368,503,0 6 132271980 rs6934749 T G 5312.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.59;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5341,489,0 6 132891507 rs41298389 C T 2584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.408;SOR=0.861 GT:AD:DP:GQ:PL 0/1:139,113:252:99:2613,0,3215 6 132892506 rs7772821 T G 1562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.002;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-1.088;SOR=0.69 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1591,0,1424 6 132910612 rs3813355 G A 6119.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6148,609,0 6 132966279 rs8192620 T C 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.204;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.212;SOR=0.762 GT:AD:DP:GQ:PL 0/1:79,86:165:99:2153,0,1718 6 133015271 rs2272996 T C 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.433;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=0.625;SOR=0.64 GT:AD:DP:GQ:PL 0/1:85,94:179:99:2402,0,1950 6 133070995 rs4895944 G T 4317.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4346,437,0 6 133072650 rs1883617 A G 1638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.526;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.653;SOR=0.765 GT:AD:DP:GQ:PL 0/1:90,62:152:99:1667,0,2190 6 133077063 rs1883613 T C 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.266;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=5.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.107;SOR=0.64 GT:AD:DP:GQ:PL 0/1:132,109:241:99:2505,0,3160 6 133092046 rs1128998 C T 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=1.009;SOR=0.473 GT:AD:DP:GQ:PL 0/1:39,39:78:99:980,0,972 6 133789728 rs9493627 G A 841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.471;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=1.457;SOR=0.641 GT:AD:DP:GQ:PL 0/1:47,36:83:99:870,0,1161 6 134304023 rs2076583 C T 844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=6.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=-1.173;SOR=1.275 GT:AD:DP:GQ:PL 0/1:61,40:101:99:873,0,1509 6 134494708 rs113667538 GA G 85.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.438;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.09;ReadPosRankSum=-1.606;SOR=1.179 GT:AD:DP:GQ:PL 0/1:29,12:41:99:123,0,598 6 135263557 rs3813342 C A 2706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.632;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-0.351;SOR=0.605 GT:AD:DP:GQ:PL 0/1:134,121:255:99:2735,0,3034 6 135358567 rs7742542 T G 980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.584;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0.872;QD=10.55;ReadPosRankSum=-2.263;SOR=0.8 GT:AD:DP:GQ:PL 0/1:54,39:93:99:1009,0,1392 6 135358916 rs9373121 G A 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-1.261;SOR=1.182 GT:AD:DP:GQ:PL 0/1:43,34:77:99:885,0,1127 6 135639644 rs6914831 C T 2204.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2233,234,0 6 135763866 rs2757645 G A 3266.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3295,330,0 6 136359446 rs9376173 A C 3248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.426;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.485;SOR=0.666 GT:AD:DP:GQ:PL 0/1:161,130:291:99:3277,0,3948 6 136599393 rs6940018 G C 2932.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.487;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=3.956;MLEAC=1;MLEAF=0.5;MQ=53.25;MQRankSum=-16.836;QD=9.49;ReadPosRankSum=-0.637;SOR=0.921 GT:AD:DP:GQ:PL 0/1:204,105:309:99:2961,0,5451 6 136599404 rs6919254 T C 2213.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.984;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=4.032;MLEAC=1;MLEAF=0.5;MQ=53.31;MQRankSum=-16.642;QD=7.35;ReadPosRankSum=0.514;SOR=0.822 GT:AD:DP:GQ:PL 0/1:201,100:301:99:2242,0,5354 6 136682172 rs2076190 G A 2918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.255;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-1.756;SOR=0.717 GT:AD:DP:GQ:PL 0/1:125,133:258:99:2947,0,2749 6 136710669 rs71817779 TA T 216.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.101;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.068;QD=3.8;ReadPosRankSum=1.57;SOR=0.409 GT:AD:DP:GQ:PL 0/1:39,18:75:99:254,0,868 6 136977568 rs2076260 T C 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.115;SOR=0.766 GT:AD:DP:GQ:PL 0/1:51,58:109:99:1421,0,1159 6 137026266 rs9321567 T G 310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=1.637;SOR=0.56 GT:AD:DP:GQ:PL 0/1:8,13:21:99:339,0,189 6 137113137 rs55666429 G A 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.592;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.241;SOR=0.509 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1822,0,2152 6 137113248 rs114489274 G C 3003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=0.818;SOR=0.606 GT:AD:DP:GQ:PL 0/1:97,117:214:99:3032,0,2519 6 137143748 rs73777751 C T 947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.147;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-0.11;SOR=0.481 GT:AD:DP:GQ:PL 0/1:40,38:78:99:976,0,1305 6 137193320 . CT C 65.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.71;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=4.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.1;ReadPosRankSum=-2.514;SOR=0.319 GT:AD:DP:GQ:PL 0/1:48,12:64:99:103,0,1234 6 137323213 rs1342642 G A 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-0.105;SOR=0.633 GT:AD:DP:GQ:PL 0/1:82,59:141:99:1358,0,2286 6 137325847 rs1555498 C T 2738.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2767,292,0 6 137325901 . TAA T,TA 1460.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=2.111;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=3.984;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=21.17;ReadPosRankSum=1.437;SOR=1.644 GT:AD:DP:GQ:PL 1/2:6,36,27:74:99:1498,412,565,691,0,654 6 137519780 rs3799488 T C 1034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.69;ReadPosRankSum=-0.653;SOR=0.6 GT:AD:DP:GQ:PL 0/1:21,41:62:99:1063,0,465 6 137540370 rs7749390 A G 2715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.82;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=1.923;SOR=0.586 GT:AD:DP:GQ:PL 0/1:107,104:211:99:2744,0,2517 6 137815120 rs62434134 G A 2363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.099;QD=11.26;ReadPosRankSum=-1.267;SOR=0.719 GT:AD:DP:GQ:PL 0/1:114,96:210:99:2392,0,3207 6 138195961 rs71670547 TCTC T 1996.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=1.997;QD=13.58;ReadPosRankSum=-0.558;SOR=0.767 GT:AD:DP:GQ:PL 0/1:64,83:147:99:2034,0,2635 6 138196066 rs2230926 T G 2677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.174;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=-2.097;QD=11.11;ReadPosRankSum=0.007;SOR=0.79 GT:AD:DP:GQ:PL 0/1:129,112:241:99:2706,0,3223 6 138413269 rs648396 A G 4672.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4701,468,0 6 138413333 rs648802 G C 4089.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4118,420,0 6 138745299 rs9495082 G A 2348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=6.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=1.577;SOR=0.408 GT:AD:DP:GQ:PL 0/1:116,106:222:99:2377,0,2820 6 138753337 rs2039121 C T 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=4.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.788;SOR=0.843 GT:AD:DP:GQ:PL 0/1:104,93:197:99:2135,0,2770 6 138754323 rs2327891 A G 3278.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3307,309,0 6 142487469 rs225656 C A 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-3.391;SOR=0.693 GT:AD:DP:GQ:PL 0/1:37,37:74:99:838,0,846 6 142491463 rs11446143 C CG 2126.73 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.67;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2164,175,0 6 142510676 rs3830800 GTATT G 1955.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.244;QD=21.97;ReadPosRankSum=0.804;SOR=0.76 GT:AD:DP:GQ:PL 0/1:38,51:89:99:1993,0,1973 6 142691549 rs11155242 A C 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.658;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-1.379;SOR=0.621 GT:AD:DP:GQ:PL 0/1:51,40:91:99:1021,0,1255 6 142691950 rs71643377 CT C 82.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.59;ReadPosRankSum=0.324;SOR=0.54 GT:AD:DP:GQ:PL 0/1:41,11:56:99:120,0,759 6 142718801 rs989946 G A 1556.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1585,162,0 6 142758631 rs1262686 A G 1731.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.64;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1760,194,0 6 143074700 rs169098 T C 4546.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4575,447,0 6 143091263 rs109836 A G 7129.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7158,706,0 6 143486211 rs143567319 C T 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=1.186;SOR=0.53 GT:AD:DP:GQ:PL 0/1:32,36:68:99:827,0,809 6 143825104 rs11155297 G T 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=2.161;SOR=0.801 GT:AD:DP:GQ:PL 0/1:71,73:144:99:1740,0,1878 6 144086394 rs9496767 G A 728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.754;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-2.572;SOR=0.948 GT:AD:DP:GQ:PL 0/1:31,30:61:99:757,0,760 6 144104429 . A G 397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.495;SOR=0.948 GT:AD:DP:GQ:PL 0/1:16,16:32:99:426,0,485 6 144181619 rs7454959 A G 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.206;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=-2.479;SOR=0.682 GT:AD:DP:GQ:PL 0/1:80,57:137:99:1209,0,1854 6 144803544 rs200742072 G GTTA 800.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.24;ReadPosRankSum=-0.51;SOR=1.765 GT:AD:DP:GQ:PL 0/1:6,30:36:99:838,0,154 6 144852201 rs12204734 G A 3706.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3735,381,0 6 144869785 rs1534443 A G 3072.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=1.686 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3101,282,0 6 145118941 rs41285041 A G 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.534;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=0.994;SOR=0.541 GT:AD:DP:GQ:PL 0/1:43,44:87:99:1169,0,1031 6 145124295 rs59277223 C A 1056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.315;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.246;SOR=0.701 GT:AD:DP:GQ:PL 0/1:53,48:101:99:1085,0,1074 6 145167978 rs9403617 C G 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.407;SOR=0.728 GT:AD:DP:GQ:PL 0/1:82,71:153:99:1641,0,2039 6 146056476 rs2235482 G C 1939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.78;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.92;ReadPosRankSum=-0.621;SOR=0.837 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1968,0,1899 6 146125793 rs3811102 A T 2167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.604;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.202;SOR=0.775 GT:AD:DP:GQ:PL 0/1:98,89:187:99:2196,0,2262 6 146126419 rs9373475 C T 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.915;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=6.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=1.49;SOR=0.826 GT:AD:DP:GQ:PL 0/1:97,83:180:99:2023,0,2262 6 146207563 rs1062067 A G 143.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0;ClippingRankSum=-0;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=23.97;ReadPosRankSum=0.21;SOR=2.303 GT:AD:DP:GQ:PL 0/1:1,5:6:21:172,0,21 6 146234644 rs9497426 G A 1065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.972;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=1.601;SOR=0.665 GT:AD:DP:GQ:PL 0/1:55,50:105:99:1094,0,1575 6 146268623 rs9386141 T A 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.41;SOR=0.861 GT:AD:DP:GQ:PL 0/1:72,88:160:99:2218,0,1781 6 146480740 rs377656301 TTCTC T,TTC 2403.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.457;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=7.59;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=28.28;ReadPosRankSum=-1.715;SOR=0.59 GT:AD:DP:GQ:PL 1/2:5,30,50:92:99:2441,1208,1507,724,0,729 6 146755515 rs6923864 T G 2368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.792;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=-0.377;SOR=0.767 GT:AD:DP:GQ:PL 0/1:144,97:241:99:2397,0,3649 6 146993445 rs9497606 T C 2531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.432;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-1.331;SOR=0.715 GT:AD:DP:GQ:PL 0/1:103,100:203:99:2560,0,2400 6 147106841 rs259391 A G 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-2.619;SOR=0.585 GT:AD:DP:GQ:PL 0/1:56,64:120:99:1441,0,1310 6 147136244 rs259370 A G 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.359;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-0.419;QD=12.38;ReadPosRankSum=-0.658;SOR=0.632 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1638,0,1398 6 147631201 rs6928919 A G 1517.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.656 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1546,150,0 6 147635385 rs1039083 C G 3192.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.61;SOR=0.874 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,70:70:99:1|1:147635385_C_G:3221,220,0 6 147635413 rs1039084 A G 3435.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.39;SOR=0.766 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,83:83:99:1|1:147635385_C_G:3464,253,0 6 147680359 rs9390459 A G 7337.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7366,717,0 6 147830212 rs71547193 G C 1813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.228;SOR=0.602 GT:AD:DP:GQ:PL 0/1:82,78:160:99:1842,0,2074 6 148664242 rs76317765 T TGAGCCC 1903.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.5;MQ=60.94;MQRankSum=4.118;QD=16.41;ReadPosRankSum=0.337;SOR=0.957 GT:AD:DP:GQ:PL 0/1:65,51:116:99:1941,0,3890 6 148792617 rs1883625 A G 508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.744;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.077;SOR=0.871 GT:AD:DP:GQ:PL 0/1:29,20:49:99:537,0,671 6 148835594 . T TAAAAAAAAAA 170.73 PASS AC=1;AF=0.5;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=28.46;SOR=0.818 GT:AD:DP:GQ:PL 0/1:0,6:15:82:128,0,82 6 148841011 rs13196292 C T 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.914;SOR=0.893 GT:AD:DP:GQ:PL 0/1:60,48:108:99:1077,0,1464 6 148854984 rs2294787 G A 1745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.578;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.883;SOR=0.576 GT:AD:DP:GQ:PL 0/1:94,77:171:99:1774,0,2120 6 148865257 rs208696 A G 2357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-0.497;SOR=0.557 GT:AD:DP:GQ:PL 0/1:134,98:232:99:2386,0,3340 6 149285719 rs3734377 A G 1479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.692;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.322;SOR=0.776 GT:AD:DP:GQ:PL 0/1:96,60:156:99:1508,0,2343 6 149340390 rs2275423 G C 2931.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2960,308,0 6 150211123 rs2151910 A T 4399.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4428,449,0 6 150266578 rs149454018 T C 464.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0;DB;DP=506;ExcessHet=3.0103;FS=3.855;MLEAC=1;MLEAF=0.5;MQ=54.01;MQRankSum=-12.326;QD=0.92;ReadPosRankSum=-2.27;SOR=1.11 GT:AD:DP:GQ:PL 0/1:436,70:506:99:493,0,12329 6 150267527 rs2282235 A C 3299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.639;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.5;MQ=55.49;MQRankSum=-1.551;QD=10.82;ReadPosRankSum=-0.292;SOR=0.754 GT:AD:DP:GQ:PL 0/1:165,140:305:99:3328,0,3726 6 150341260 rs199848645 C T 106.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.046;ClippingRankSum=0;DB;DP=21;ExcessHet=3.0103;FS=17.311;MLEAC=1;MLEAF=0.5;MQ=28.98;MQRankSum=0.512;QD=5.08;ReadPosRankSum=1.615;SOR=3.902 GT:AD:DP:GQ:PL 0/1:15,6:21:99:135,0,430 6 150342232 rs61730071 G A 4160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=5.436;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=-5.296;QD=11.89;ReadPosRankSum=1.783;SOR=0.929 GT:AD:DP:GQ:PL 0/1:179,171:350:99:4189,0,4440 6 150343148 rs78563624 A C 140.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.18;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=27.628;MLEAC=1;MLEAF=0.5;MQ=43.01;MQRankSum=-3.07;QD=0.96;ReadPosRankSum=-0.255;SOR=3.496 GT:AD:DP:GQ:PL 0/1:128,18:146:99:169,0,3282 6 150343211 rs202055124 A G 3137.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.94;QD=32.35;SOR=1.099 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3166,292,0 6 150346532 rs1543547 T C 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.702;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-1.162;SOR=0.833 GT:AD:DP:GQ:PL 0/1:96,85:181:99:2110,0,2010 6 150385730 rs912558 T G 1495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.185;SOR=0.824 GT:AD:DP:GQ:PL 0/1:58,60:118:99:1524,0,1515 6 150386818 rs370222712 A G 2552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.619;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=1.139;SOR=0.7 GT:AD:DP:GQ:PL 0/1:93,96:189:99:2581,0,2124 6 150387302 rs669009 A T 5574.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.22;SOR=1.152 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,129:129:99:1|1:150387302_A_T:5603,391,0 6 150387312 rs6935471 A G 5359.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.66;SOR=1.316 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:150387302_A_T:5388,370,0 6 150390118 rs113233347 C T 2537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.518;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.404;SOR=0.675 GT:AD:DP:GQ:PL 0/1:118,112:230:99:2566,0,3058 6 150464356 rs2297672 A G 4334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.161;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=0.884;SOR=0.692 GT:AD:DP:GQ:PL 0/1:149,165:314:99:4363,0,3625 6 150716696 rs612421 T C 2518.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2547,246,0 6 151125896 rs712218 G A 2977.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3006,306,0 6 151152257 rs926624 A G 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.62;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=0.204;SOR=0.618 GT:AD:DP:GQ:PL 0/1:45,49:94:99:1421,0,1092 6 151152656 rs803411 T C 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.645;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.458;SOR=0.842 GT:AD:DP:GQ:PL 0/1:70,61:131:99:1486,0,1639 6 151247439 rs803455 A G 3886.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3915,372,0 6 151281567 rs1771798 T C 6793.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6822,689,0 6 151627034 rs2294792 A G 5598.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5627,572,0 6 151669875 rs10872670 A G 1998.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.77;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2027,183,0 6 151670172 rs3734799 A C 5385.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5414,534,0 6 151670690 rs35341741 G A 2653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.75;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=2.052;SOR=0.6 GT:AD:DP:GQ:PL 0/1:120,108:228:99:2682,0,3131 6 151670897 rs900654 T C 5793.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5822,552,0 6 151672285 rs13212161 A G 2495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.656;SOR=0.763 GT:AD:DP:GQ:PL 0/1:117,96:213:99:2524,0,3185 6 151673589 rs12201388 G A 2278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.852;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=0.769;SOR=0.826 GT:AD:DP:GQ:PL 0/1:139,99:238:99:2307,0,3419 6 151674116 rs113116275 T TGAG 10418.7 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.1;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,231:231:99:10456,701,0 6 151674270 rs34713284 G A 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.288;SOR=0.842 GT:AD:DP:GQ:PL 0/1:98,99:197:99:2373,0,2394 6 151674326 rs3823310 A C 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.165;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-1.702;SOR=0.668 GT:AD:DP:GQ:PL 0/1:97,109:206:99:2522,0,2148 6 151686905 rs11155787 C T 3398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.743;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=4.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=1.314;SOR=0.951 GT:AD:DP:GQ:PL 0/1:152,139:291:99:3427,0,3527 6 151754273 rs6904364 T C 1966.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1995,207,0 6 151766822 rs11550103 C A 1763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.133;SOR=0.609 GT:AD:DP:GQ:PL 0/1:64,75:139:99:1792,0,1497 6 151789868 rs35972078 G A 1261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.279;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=4.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=1.632;SOR=0.738 GT:AD:DP:GQ:PL 0/1:62,57:119:99:1290,0,1404 6 151857594 rs6931664 A G 3848.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=1.368 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3877,359,0 6 151859314 rs4870034 A G 4860.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4889,470,0 6 151869617 rs192947987 T G 2379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=0.257;SOR=0.648 GT:AD:DP:GQ:PL 0/1:76,105:181:99:2408,0,1700 6 151894505 rs953767 T C 5925.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5954,578,0 6 151936677 rs6929137 G A 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.802;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=6.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=-0.764;SOR=0.871 GT:AD:DP:GQ:PL 0/1:39,54:93:99:1380,0,1064 6 151939181 rs3734804 G A 2067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.65;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.558;SOR=0.524 GT:AD:DP:GQ:PL 0/1:78,91:169:99:2096,0,1745 6 152129077 rs2077647 T C 4769.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4798,444,0 6 152129308 rs746432 G C 3090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-1.033;SOR=0.539 GT:AD:DP:GQ:PL 0/1:129,126:255:99:3119,0,3143 6 152201875 rs4986934 T C 2815.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2844,300,0 6 152265522 rs1801132 G C 5845.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.84;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5874,534,0 6 152420095 rs2228480 G A 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.971;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=2.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=0.436;SOR=1.167 GT:AD:DP:GQ:PL 0/1:36,36:72:99:1025,0,889 6 152443761 rs2295192 C T 2662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.444;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=1.779;SOR=0.621 GT:AD:DP:GQ:PL 0/1:131,119:250:99:2691,0,3050 6 152462480 rs139671151 C A 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.053;SOR=0.875 GT:AD:DP:GQ:PL 0/1:59,68:127:99:1599,0,1384 6 152464839 rs2256135 A G 7187.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7216,719,0 6 152466674 rs2747662 T C 3049.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3078,291,0 6 152469188 rs2252755 C G 2642.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=1.501 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2671,252,0 6 152469331 rs2252748 C T 7925.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,272:272:99:7954,814,0 6 152470752 rs17082236 C A 1631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.847;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.586;SOR=0.6 GT:AD:DP:GQ:PL 0/1:86,69:155:99:1660,0,2086 6 152540278 rs2147377 A C 3994.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4023,387,0 6 152555112 rs2296254 C T 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.745;SOR=0.46 GT:AD:DP:GQ:PL 0/1:39,35:74:99:843,0,1073 6 152570415 rs6557210 G A 1446.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1475,147,0 6 152629772 . G GA 41.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.09;ClippingRankSum=0;DP=95;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=2.717;QD=0.66;ReadPosRankSum=-0.379;SOR=1.112 GT:AD:DP:GQ:PL 0/1:52,11:74:79:79,0,1067 6 152647681 rs2306916 A T 4831.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4860,479,0 6 152652034 rs6911096 A T 5159.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5188,516,0 6 152653037 rs9478314 T C 1314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=0.137;SOR=0.831 GT:AD:DP:GQ:PL 0/1:47,51:98:99:1343,0,1206 6 152658142 rs9479297 T C 3669.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3698,345,0 6 152660451 rs71575926 G A 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.336;SOR=0.522 GT:AD:DP:GQ:PL 0/1:83,81:164:99:1973,0,2062 6 152665261 rs4645434 C A 6622.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6651,695,0 6 152671475 rs9478320 A C 4115.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=1.434 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4144,387,0 6 152671919 rs5880967 G GA 2833.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.759;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.53;ReadPosRankSum=-1.118;SOR=1.002 GT:AD:DP:GQ:PL 1/1:5,106:113:99:2871,213,0 6 152673147 rs6908392 G A 2766.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.661 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2795,278,0 6 152675854 rs9397102 A G 5391.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5420,513,0 6 152683413 rs4407724 G T 4135.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4164,437,0 6 152694184 rs6913579 T C 4082.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4111,407,0 6 153296541 rs2073260 G C 4793.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4822,450,0 6 153296772 rs9479472 A G 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.879;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.92;ReadPosRankSum=0;SOR=1.143 GT:AD:DP:GQ:PL 0/1:18,24:42:99:697,0,405 6 153323594 rs3818123 C T 6995.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.93;QD=32.54;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,215:215:99:7024,645,0 6 153323709 rs3818125 T C 7526.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.75;QD=34.06;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,221:221:99:7555,663,0 6 153345647 rs2073259 G A 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-1.46;SOR=0.397 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1239,0,1224 6 154414446 rs540825 A T 1866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=1.248;SOR=0.662 GT:AD:DP:GQ:PL 0/1:70,82:152:99:1895,0,1633 6 154431565 rs606545 G A 289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.8;ReadPosRankSum=-0.099;SOR=0.754 GT:AD:DP:GQ:PL 0/1:33,17:50:99:318,0,773 6 154567863 rs34427887 C T 2527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=1.719;SOR=0.582 GT:AD:DP:GQ:PL 0/1:101,110:211:99:2556,0,2441 6 154763401 rs6557351 G A 1536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=5.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=0.845;SOR=0.366 GT:AD:DP:GQ:PL 0/1:42,62:104:99:1565,0,1034 6 154771277 rs9322467 A G 5565.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5594,570,0 6 155109168 rs370598712 GT G 486.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.522;QD=7.05;ReadPosRankSum=0.482;SOR=0.54 GT:AD:DP:GQ:PL 0/1:39,30:74:99:524,0,833 6 155116285 rs57295441 TTC T 1316.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.39;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.246;QD=13.86;ReadPosRankSum=0.673;SOR=0.499 GT:AD:DP:GQ:PL 0/1:57,38:95:99:1354,0,2305 6 155153131 rs34353222 G A 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=0.522;SOR=0.716 GT:AD:DP:GQ:PL 0/1:70,51:121:99:1058,0,1821 6 155153307 rs34802160 G A 2162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=6.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.005;SOR=1.163 GT:AD:DP:GQ:PL 0/1:77,88:165:99:2191,0,2165 6 155485535 rs1032140 G A 2626.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=2.57 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2655,248,0 6 155485554 rs1032141 G A 3784.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.629 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3813,365,0 6 155561760 rs4259257 T C 7000.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7029,731,0 6 155561796 rs11751128 C T 6465.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6494,663,0 6 155571113 rs3011902 A G 2764.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2793,294,0 6 155571697 rs1041474 T C 3838.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3867,395,0 6 155574198 rs2989458 C T 5741.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.53;SOR=0.833 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,135:135:99:1|1:155574198_C_T:5770,406,0 6 155574207 rs2274824 T C 5424.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.83;SOR=0.968 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:155574198_C_T:5453,370,0 6 155575546 rs1331213 C G 4501.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4530,456,0 6 155575607 rs3011895 G A 4963.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4992,492,0 6 157405930 rs3734441 G A 3656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=1.588;SOR=0.57 GT:AD:DP:GQ:PL 0/1:179,171:350:99:3685,0,4155 6 158361899 rs912879 C T 1602.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=1.412 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1631,168,0 6 158497717 rs2296508 T C 2994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.157;SOR=0.534 GT:AD:DP:GQ:PL 0/1:115,126:241:99:3023,0,2580 6 158499302 rs2296507 G T 1106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.5;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-2.01;SOR=0.711 GT:AD:DP:GQ:PL 0/1:40,51:91:99:1135,0,824 6 158502137 rs2256014 G T 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.306;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.901;SOR=0.504 GT:AD:DP:GQ:PGT:PID:PL 0/1:55,53:108:99:1|0:158502102_C_A:1358,0,1476 6 158505088 rs1744173 A G 5128.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5157,533,0 6 158507981 rs2296506 G A 1582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.33;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-2.484;SOR=0.55 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1611,0,1837 6 158509750 rs350289 A G 3565.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3594,369,0 6 158517308 rs2502601 A G 3299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=-1.728;SOR=0.773 GT:AD:DP:GQ:PL 0/1:111,134:245:99:3328,0,2710 6 158569886 rs9356399 T C 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.315;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.136;SOR=0.884 GT:AD:DP:GQ:PL 0/1:44,44:88:99:1076,0,1054 6 158571501 rs6929274 G A 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.578;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=0.246;SOR=0.517 GT:AD:DP:GQ:PL 0/1:54,35:89:99:799,0,1339 6 158735087 rs9364951 C T 8400.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.92;SOR=1.05 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,187:187:99:1|1:158735087_C_T:8429,566,0 6 158735090 rs7756620 T C 8400.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.68;SOR=1.033 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,188:188:99:1|1:158735087_C_T:8429,566,0 6 158870081 rs705956 A G 6119.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6148,621,0 6 158923434 rs9364968 G C 7912.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.936;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=3.64;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.4;ReadPosRankSum=2.362;SOR=0.691 GT:AD:DP:GQ:PL 1/1:1,251:252:99:7941,746,0 6 158924088 rs914690 T C 10088.8 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,316:316:99:10117,947,0 6 158924470 rs150378179 G A 2910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-0.058;SOR=0.768 GT:AD:DP:GQ:PL 0/1:176,130:306:99:2939,0,4483 6 158927651 rs3828712 A G 3402.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3431,354,0 6 159065758 rs2306751 C G 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.027;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=1.319;SOR=0.808 GT:AD:DP:GQ:PL 0/1:70,49:119:99:1193,0,1768 6 159181740 rs117895837 C T 870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.26;ReadPosRankSum=-0.633;SOR=0.478 GT:AD:DP:GQ:PL 0/1:75,45:120:99:899,0,1835 6 159184462 rs2291387 A G 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.825;SOR=0.723 GT:AD:DP:GQ:PL 0/1:69,58:127:99:1432,0,1727 6 159185563 rs3123101 T A 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.442;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-1.912;SOR=0.754 GT:AD:DP:GQ:PL 0/1:56,46:102:99:1053,0,1327 6 159188128 rs2242318 A G 1700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.956;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=-0.013;SOR=0.766 GT:AD:DP:GQ:PL 0/1:66,62:128:99:1729,0,1728 6 159191788 rs3212308 C T 2367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=1.362;SOR=0.744 GT:AD:DP:GQ:PL 0/1:79,98:177:99:2396,0,1906 6 159205668 rs3103003 G A 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=0;SOR=0.478 GT:AD:DP:GQ:PL 0/1:54,45:99:99:921,0,1270 6 159462366 rs372981769 C T 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.313;SOR=0.878 GT:AD:DP:GQ:PL 0/1:91,93:184:99:2303,0,2276 6 159650978 rs509648 A G 1725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.587;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.8;ReadPosRankSum=-0.342;SOR=0.567 GT:AD:DP:GQ:PL 0/1:116,80:196:99:1754,0,2651 6 159652931 rs420137 G C 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.673;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=0.496;SOR=0.933 GT:AD:DP:GQ:PL 0/1:86,61:147:99:1449,0,2102 6 159653635 rs381639 C G 4841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=2.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=0.433;SOR=0.829 GT:AD:DP:GQ:PL 0/1:151,187:338:99:4870,0,4006 6 159654487 rs404435 G T 3945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.302;SOR=0.661 GT:AD:DP:GQ:PL 0/1:179,167:346:99:3974,0,4415 6 159654551 rs370434 C G 4018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.922;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=2.199;SOR=0.723 GT:AD:DP:GQ:PL 0/1:189,153:342:99:4047,0,4989 6 159654994 rs402388 A C 4187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.217;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=1.481;SOR=0.651 GT:AD:DP:GQ:PL 0/1:147,156:303:99:4216,0,3370 6 159655084 rs420054 C G 3455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.752;SOR=0.577 GT:AD:DP:GQ:PL 0/1:143,136:279:99:3484,0,3883 6 159655102 rs436743 A G 3843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.793;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.422;SOR=0.714 GT:AD:DP:GQ:PL 0/1:154,151:305:99:3872,0,3699 6 159655326 rs3003174 T C 3339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.885;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.816;SOR=0.746 GT:AD:DP:GQ:PL 0/1:172,147:319:99:3368,0,4473 6 159655383 rs2501176 A G 4180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=10.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=-0.509;SOR=0.346 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,118:271:99:0|1:159655383_A_G:4209,0,6146 6 159655402 rs2932988 A G 4218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=8.65;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.04;ReadPosRankSum=-2.35;SOR=0.39 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,121:263:99:0|1:159655383_A_G:4247,0,5840 6 159660779 rs141435210 GCCACCACCCGCCGCACGA G 5576.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.591;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=2.448;QD=14.87;ReadPosRankSum=2.045;SOR=0.686 GT:AD:DP:GQ:PL 0/1:224,151:375:99:5614,0,9145 6 159660879 rs386360 C A 2158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.191;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.707;QD=7.82;ReadPosRankSum=-0.727;SOR=0.771 GT:AD:DP:GQ:PL 0/1:163,113:276:99:2187,0,4127 6 159667961 rs294911 T G 914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.984;SOR=0.739 GT:AD:DP:GQ:PL 0/1:42,43:85:99:943,0,975 6 159670100 rs7763726 A G 1472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.432;SOR=0.498 GT:AD:DP:GQ:PL 0/1:63,62:125:99:1501,0,1511 6 159672455 rs294899 C T 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.799;SOR=0.816 GT:AD:DP:GQ:PL 0/1:121,90:211:99:2048,0,2934 6 159682206 rs294883 C T 1760.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1789,186,0 6 159692405 rs3814448 C T 1857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.269;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.759;SOR=0.928 GT:AD:DP:GQ:PL 0/1:79,82:161:99:1886,0,1682 6 160113872 rs4880 A G 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.624;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.979;SOR=1.033 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1734,0,1458 6 160114168 rs5746094 T C 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.685;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.315;SOR=0.696 GT:AD:DP:GQ:PL 0/1:83,71:154:99:1825,0,1967 6 160196343 rs25683 A G 4568.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4597,434,0 6 160198395 rs3465 G A 4206.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4235,446,0 6 160199687 rs15982 T C 4615.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.457 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4644,449,0 6 160207049 rs2273828 T C 1656.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1685,164,0 6 160208804 rs142717677 T C 1245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=10.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-2.272;SOR=0.572 GT:AD:DP:GQ:PL 0/1:59,57:116:99:1274,0,1471 6 160211636 rs1128670 G A 6216.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6245,641,0 6 160211645 rs58504486 GGTT G 9197.73 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=44.65;SOR=1 GT:AD:DP:GQ:PL 1/1:0,206:206:99:9235,620,0 6 160224346 rs2146163 T C 2397.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2426,252,0 6 160225012 rs35435543 T G 3974.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4003,404,0 6 160328620 rs220721 C T 1815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=7.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.596;SOR=0.833 GT:AD:DP:GQ:PL 0/1:90,78:168:99:1844,0,2187 6 160494409 rs629849 A G 5647.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5676,561,0 6 160505199 rs614754 C G 3090.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3119,321,0 6 160510205 rs55987511 T C 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.617;SOR=0.806 GT:AD:DP:GQ:PL 0/1:63,56:119:99:1373,0,1602 6 160543148 rs12208357 C T 2775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=1.935;SOR=0.919 GT:AD:DP:GQ:PL 0/1:135,114:249:99:2804,0,3425 6 160551204 rs683369 G C 1562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=-0.269;SOR=0.595 GT:AD:DP:GQ:PL 0/1:54,70:124:99:1591,0,1258 6 160560845 rs628031 A G 2505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.218;QD=14.08;ReadPosRankSum=-1.269;SOR=0.777 GT:AD:DP:GQ:PL 0/1:75,103:178:99:2534,0,1696 6 160560880 rs202220802 CATG C 2797.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.38;QD=19.84;ReadPosRankSum=-2.055;SOR=1.021 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,73:141:99:0|1:160560880_CATG_C:2835,0,4104 6 160560897 rs113569197 CTGGTAAGT C 2493.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.353;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.48;ReadPosRankSum=-1.187;SOR=0.78 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,63:128:99:0|1:160560880_CATG_C:2531,0,4021 6 160645832 rs316003 C T 2340.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2369,252,0 6 160670282 rs316019 A C 3547.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3576,342,0 6 160679400 rs624249 C A 3516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.691;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-0.251;SOR=0.856 GT:AD:DP:GQ:PL 0/1:159,149:308:99:3545,0,3674 6 160769811 rs668871 C T 9579.77 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,320:320:99:9608,954,0 6 160953642 rs41267809 A G 934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=0.356;SOR=0.583 GT:AD:DP:GQ:PL 0/1:31,41:72:99:963,0,734 6 160969629 rs1801693 A G 5239.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.43;QD=28.17;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5268,557,0 6 160998148 rs3798221 G T 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=-1.021;SOR=0.449 GT:AD:DP:GQ:PL 0/1:62,37:99:99:807,0,1729 6 161006172 rs41272110 T G 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.137;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-0.612;SOR=0.614 GT:AD:DP:GQ:PL 0/1:70,69:139:99:1638,0,1643 6 161007496 rs7765781 G C 4622.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4651,455,0 6 161007538 rs7765803 G C 5092.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5121,486,0 6 161032668 rs113727842 A G 9106.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.82;QD=30.77;SOR=1.667 GT:AD:DP:GQ:PL 1/1:0,296:296:99:9135,888,0 6 161054859 rs4709450 A G 1440.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.33;MQRankSum=0.292;QD=30.02;ReadPosRankSum=-0.522;SOR=6.358 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1469,113,0 6 161132146 rs4757 C T 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.72;ReadPosRankSum=-0.234;SOR=0.542 GT:AD:DP:GQ:PL 0/1:29,48:77:99:1239,0,693 6 161137663 rs4252109 T G 748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.424;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-0.236;SOR=0.83 GT:AD:DP:GQ:PL 0/1:31,31:62:99:777,0,763 6 161137779 rs14224 T C 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.143;SOR=0.57 GT:AD:DP:GQ:PL 0/1:51,68:119:99:1539,0,1057 6 161139480 rs1130656 C T 676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.106;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=3.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=-0.555;SOR=1.096 GT:AD:DP:GQ:PL 0/1:54,31:85:99:705,0,1387 6 161139502 rs2295368 G A 501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.937;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.6;ReadPosRankSum=-2.065;SOR=0.865 GT:AD:DP:GQ:PL 0/1:44,22:66:99:530,0,1161 6 161139857 rs13231 A G 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.05;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.804;SOR=0.76 GT:AD:DP:GQ:PL 0/1:69,57:126:99:1398,0,1619 6 161143608 rs4252120 T C 1402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=0.744;SOR=0.597 GT:AD:DP:GQ:PL 0/1:53,63:116:99:1431,0,1145 6 161152240 rs4252125 G A 1292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.198;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=0.254;SOR=0.861 GT:AD:DP:GQ:PL 0/1:38,54:92:99:1321,0,1002 6 161160083 rs2859879 G A 2718.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=1.872 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2747,253,0 6 161173946 rs11060 T G 5789.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.98;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.97;MQRankSum=-0.575;QD=30.31;ReadPosRankSum=-0.415;SOR=0.346 GT:AD:DP:GQ:PL 1/1:1,190:191:99:5818,562,0 6 161469774 rs4559074 G A 5557.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5586,540,0 6 161509003 rs9355332 T A 3560.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3589,373,0 6 161519350 . CCTGCTG C,CCTG 7943.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.037;ClippingRankSum=0;DP=352;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.15;MQRankSum=0.272;QD=26.3;ReadPosRankSum=0.046;SOR=0.819 GT:AD:DP:GQ:PL 1/2:4,29,269:306:99:7981,7458,11268,1071,0,358 6 161532855 rs35961625 CT C 2133.73 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2171,205,0 6 162622304 rs4709583 A G 2123.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=1.376 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2152,198,0 6 163733793 rs56761274 T A 535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=4.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8;ReadPosRankSum=0.699;SOR=0.301 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,26:67:99:1|0:163733770_T_G:564,0,1062 6 165703453 rs73022263 A C 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-0.148;SOR=0.622 GT:AD:DP:GQ:PL 0/1:52,60:112:99:1389,0,1175 6 165712927 rs56325343 G A 824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.634;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=0.454;SOR=0.71 GT:AD:DP:GQ:PL 0/1:61,39:100:99:853,0,1447 6 165713961 rs510579 A C 1595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.184;SOR=0.582 GT:AD:DP:GQ:PL 0/1:76,73:149:99:1624,0,1692 6 165715460 rs9459355 G C 3685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.452;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-0.488;SOR=0.769 GT:AD:DP:GQ:PL 0/1:144,139:283:99:3714,0,3552 6 165715673 rs9459356 A G 3362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.164;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=0.419;SOR=0.879 GT:AD:DP:GQ:PL 0/1:112,134:246:99:3391,0,2799 6 165801790 rs1511746 G A 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=2.076;SOR=0.749 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1421,0,1471 6 165827194 rs220749 A G 1455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.32;ReadPosRankSum=-0.037;SOR=0.849 GT:AD:DP:GQ:PL 0/1:35,60:95:99:1484,0,720 6 165895824 rs9459421 T C 720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=1.417;SOR=0.732 GT:AD:DP:GQ:PL 0/1:23,32:55:99:749,0,485 6 166571935 rs35819705 C T 5120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.69;ClippingRankSum=0;DB;DP=451;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.349;SOR=0.545 GT:AD:DP:GQ:PL 0/1:223,225:448:99:5149,0,5685 6 166574346 rs117097130 G A 2598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=1.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=0.801;SOR=0.598 GT:AD:DP:GQ:PL 0/1:142,117:259:99:2627,0,3352 6 166579270 rs2305089 C T 1979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.255;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=-1.914;SOR=0.554 GT:AD:DP:GQ:PL 0/1:121,92:213:99:2008,0,2820 6 166720806 rs911203 G C 7024.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7053,690,0 6 166721211 rs13204594 G T 11253.8 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.02;SOR=1.342 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,250:250:99:1|1:166721211_G_T:11282,782,0 6 166721224 rs7757150 C G 12223.8 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.72;SOR=1.198 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,293:293:99:1|1:166721211_G_T:12252,884,0 6 166721424 rs13205770 C T 9934.77 PASS AC=2;AF=1;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,345:345:99:9963,1029,0 6 166736362 rs7088 C T 608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.117;SOR=0.76 GT:AD:DP:GQ:PL 0/1:34,29:63:99:637,0,781 6 166755975 rs10862 T C 4212.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.43;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,97:97:99:1|1:166755975_T_C:4241,292,0 6 166755979 rs11168 A C 4105.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.12;SOR=1.071 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,91:91:99:1|1:166755975_T_C:4134,280,0 6 166826255 rs909631 G A 4416.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4445,448,0 6 166826304 rs760670 T C 4709.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4738,456,0 6 166827436 rs2235295 T C 4114.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.558 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4143,408,0 6 166831694 rs10946164 C T 2137.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2166,231,0 6 166862233 rs2230730 T C 2100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-1.891;SOR=0.906 GT:AD:DP:GQ:PL 0/1:77,86:163:99:2129,0,1935 6 166873010 rs2230729 C T 2701.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.29;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2730,296,0 6 166952264 rs1003857 G A 451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.07;ReadPosRankSum=-1.911;SOR=0.77 GT:AD:DP:GQ:PL 0/1:32,24:56:99:480,0,703 6 167271711 rs943687 T C 2075.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.68;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2104,224,0 6 167413539 rs12212247 T C 1338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.342;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.62;ReadPosRankSum=1.025;SOR=0.841 GT:AD:DP:GQ:PL 0/1:20,56:76:99:1367,0,329 6 167424293 rs1322077 T C 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.34;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=8.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.11;ReadPosRankSum=0.293;SOR=2.037 GT:AD:DP:GQ:PL 0/1:23,28:51:99:799,0,513 6 167453519 rs61189196 A AT 1888.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.394;QD=19.67;ReadPosRankSum=0.667;SOR=0.592 GT:AD:DP:GQ:PL 0/1:13,83:110:44:1926,0,44 6 167550042 rs2071171 C T 4090.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4119,408,0 6 167571048 rs6902566 T C 6390.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6419,627,0 6 167571266 rs4569938 A T 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.778;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.307;SOR=0.763 GT:AD:DP:GQ:PL 0/1:95,101:196:99:2389,0,2055 6 167590541 rs3737098 G A 7851.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.487;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=3.137;MLEAC=2;MLEAF=1;MQ=41.22;MQRankSum=1.255;QD=25.09;ReadPosRankSum=2.473;SOR=0.326 GT:AD:DP:GQ:PL 1/1:1,312:313:99:7880,905,0 6 167590574 rs2989541 G C 6240.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.66;QD=28.24;SOR=1.21 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6269,662,0 6 167591956 rs201757849 C T 2135.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.565;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.37;MQRankSum=-1.127;QD=6.14;ReadPosRankSum=1.266;SOR=0.696 GT:AD:DP:GQ:PL 0/1:231,117:348:99:2164,0,5352 6 167592524 rs2989545 T C 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.76;MLEAC=1;MLEAF=0.5;MQ=57.97;MQRankSum=-0.617;QD=7.99;ReadPosRankSum=-1.389;SOR=0.936 GT:AD:DP:GQ:PL 0/1:112,69:181:99:1475,0,2697 6 167592576 rs60976240 G A 1781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.707;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=-3.678;QD=7.49;ReadPosRankSum=0.325;SOR=0.725 GT:AD:DP:GQ:PL 0/1:148,90:238:99:1810,0,3351 6 167594182 rs56218798 A C 235.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=26.2;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,9:9:27:264,27,0 6 167717457 rs145360877 C T 2051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=3.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.505;SOR=0.971 GT:AD:DP:GQ:PL 0/1:94,88:182:99:2080,0,2286 6 167721253 rs3817768 C G 1663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=-0.52;SOR=0.641 GT:AD:DP:GQ:PL 0/1:100,79:179:99:1692,0,2511 6 167728774 rs663606 T C 1963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.091;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.5;MQ=54.79;MQRankSum=-12.016;QD=8.58;ReadPosRankSum=-1.619;SOR=0.789 GT:AD:DP:GQ:PL 0/1:147,82:229:99:1992,0,3711 6 167753691 rs877653 C T 2684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.13;SOR=0.587 GT:AD:DP:GQ:PL 0/1:133,117:250:99:2713,0,3222 6 167754661 rs909545 A G 2383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.869;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-2.34;SOR=0.597 GT:AD:DP:GQ:PL 0/1:96,95:191:99:2412,0,2292 6 167754702 rs909546 C T 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=2.087;SOR=0.652 GT:AD:DP:GQ:PL 0/1:100,85:185:99:2111,0,2528 6 167786750 rs143094588 C A 1562.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.219;ClippingRankSum=0;DB;DP=500;ExcessHet=3.0103;FS=1.5;MLEAC=1;MLEAF=0.5;MQ=53.63;MQRankSum=-15.195;QD=3.14;ReadPosRankSum=-2.514;SOR=0.881 GT:AD:DP:GQ:PL 0/1:406,91:497:99:1591,0,10949 6 167791524 rs17855200 C T 157.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.63;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=36.177;MLEAC=1;MLEAF=0.5;MQ=57.98;MQRankSum=-16.962;QD=0.4;ReadPosRankSum=-2.522;SOR=2.898 GT:AD:DP:GQ:PGT:PID:PL 0/1:364,34:398:99:0|1:167791524_C_T:186,0,18886 6 168298875 rs9346511 C T 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.365;SOR=0.445 GT:AD:DP:GQ:PL 0/1:67,50:117:99:1221,0,1891 6 168314997 rs11355618 AG A 1964.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.51;ReadPosRankSum=0.48;SOR=0.554 GT:AD:DP:GQ:PL 0/1:56,63:119:99:2002,0,1703 6 168316118 rs3213591 T G 2179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.488;SOR=0.585 GT:AD:DP:GQ:PL 0/1:108,88:196:99:2208,0,2683 6 168325673 rs610670 T C 962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.04;ReadPosRankSum=-0.481;SOR=0.767 GT:AD:DP:GQ:PL 0/1:25,39:64:99:991,0,546 6 168343838 rs1132306 T C 1018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=2.136;SOR=0.785 GT:AD:DP:GQ:PL 0/1:43,47:90:99:1047,0,1028 6 168352105 rs2076664 G A 3094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.697;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=1.476;SOR=0.526 GT:AD:DP:GQ:PL 0/1:111,125:236:99:3123,0,2609 6 168457801 rs3734898 A G 5016.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5045,492,0 6 168457966 rs3734899 G A 2796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-1.399;SOR=0.69 GT:AD:DP:GQ:PL 0/1:98,116:214:99:2825,0,2459 6 168459790 rs1465182 G T 2496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.91;ReadPosRankSum=-0.223;SOR=0.596 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,64:132:99:0|1:168459790_G_T:2525,0,2657 6 168459792 rs2269680 G A 2496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.63;ReadPosRankSum=-0.465;SOR=0.589 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,66:134:99:0|1:168459790_G_T:2525,0,2657 6 168459845 rs1548349 G C 4279.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4308,443,0 6 168462626 rs12197610 G A 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.458;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.409;SOR=0.799 GT:AD:DP:GQ:PL 0/1:89,87:176:99:2181,0,2116 6 168479604 rs34054991 G A 7510.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.02;QD=28.34;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7539,791,0 6 168479790 rs11750985 C T 6109.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=1.008 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6138,626,0 6 168708751 rs10945499 A G 4017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.9;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.194;SOR=0.577 GT:AD:DP:GQ:PL 0/1:174,167:341:99:4046,0,4610 6 168708793 rs10945500 C G 6625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.921;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=5.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.39;ReadPosRankSum=-1.218;SOR=0.93 GT:AD:DP:GQ:PGT:PID:PL 0/1:201,180:381:99:0|1:168708793_C_G:6654,0,9061 6 168708816 rs10945501 T G 7043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.049;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.27;ReadPosRankSum=-0.27;SOR=0.518 GT:AD:DP:GQ:PGT:PID:PL 0/1:233,200:433:99:0|1:168708793_C_G:7072,0,9847 6 168709385 rs6925614 T C 4649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-1.215;SOR=0.699 GT:AD:DP:GQ:PL 0/1:177,188:365:99:4678,0,4538 6 169617934 rs58423957 GA G 1991.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;MQRankSum=0.347;QD=22.38;ReadPosRankSum=1.288;SOR=0.439 GT:AD:DP:GQ:PL 1/1:4,85:89:99:2029,155,0 6 169620450 rs140725844 AAAG A 2176.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.937;QD=20.73;ReadPosRankSum=-1.519;SOR=0.971 GT:AD:DP:GQ:PL 0/1:48,57:105:99:2214,0,1842 6 169621536 rs1132742 A G 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.16;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-2.129;SOR=0.687 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1445,0,1404 6 169622490 rs9505895 G A 2584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.632;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-1.476;SOR=0.955 GT:AD:DP:GQ:PL 0/1:109,100:209:99:2613,0,2536 6 169629783 rs6422747 G A 3019.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3048,294,0 6 169632219 rs35935937 G A 3385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.64;SOR=0.595 GT:AD:DP:GQ:PL 0/1:148,144:292:99:3414,0,3566 6 169632915 rs13196021 C T 3266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.28;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-1.211;SOR=0.875 GT:AD:DP:GQ:PL 0/1:192,152:344:99:3295,0,4714 6 169634896 rs34987335 G A 3484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.142;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.286;SOR=0.83 GT:AD:DP:GQ:PL 0/1:127,146:273:99:3513,0,2981 6 169637456 rs9283850 G A 3556.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3585,357,0 6 169637763 rs9766671 G C 2188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.034;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=-1.22;SOR=0.511 GT:AD:DP:GQ:PL 0/1:140,96:236:99:2217,0,3546 6 169640529 rs6906765 C T 1890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=4.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.051;SOR=0.998 GT:AD:DP:GQ:PL 0/1:107,81:188:99:1919,0,2704 6 169982927 rs6941625 T A 3993.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4022,428,0 6 170033086 rs9396946 G A 5517.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.73;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5546,596,0 6 170038696 rs41265375 G A 7391.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,268:268:99:7420,803,0 6 170059627 rs3823464 G A 2528.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2557,249,0 6 170068180 rs3823465 A G 6803.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.913 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6832,685,0 6 170070723 rs4236176 A G 6302.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6331,657,0 6 170871013 rs113202486 A ACAG 1266.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=4.805;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=8.07;ReadPosRankSum=-1.45;SOR=1.06 GT:AD:DP:GQ:PL 0/1:95,62:157:99:1304,0,3633 6 170871037 rs71815788 GCAA G 2293.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=0;QD=12.53;ReadPosRankSum=3.273;SOR=0.562 GT:AD:DP:GQ:PL 0/1:110,73:183:99:2331,0,3363 6 170871052 rs112083427 G A 1171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=0;QD=5.74;ReadPosRankSum=2.384;SOR=0.718 GT:AD:DP:GQ:PL 0/1:151,53:204:99:1200,0,5546 6 170878886 rs2235506 A G 1208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.806;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=0.665;SOR=0.787 GT:AD:DP:GQ:PL 0/1:39,45:84:99:1237,0,952 7 296671 rs141959001 C T 1544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.44;ReadPosRankSum=2.158;SOR=0.851 GT:AD:DP:GQ:PL 0/1:107,76:183:99:1573,0,2503 7 331427 rs141537626 C A 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.399;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.357;SOR=0.608 GT:AD:DP:GQ:PL 0/1:74,56:130:99:1512,0,2018 7 540741 rs1800814 G A 2748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-1.767;SOR=0.767 GT:AD:DP:GQ:PL 0/1:132,117:249:99:2777,0,3364 7 552046 rs1129401 A G 2869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.249;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=5.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.034;SOR=0.43 GT:AD:DP:GQ:PL 0/1:103,119:222:99:2898,0,2376 7 590199 rs11545042 A G 3138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.609;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.508;SOR=0.471 GT:AD:DP:GQ:PL 0/1:105,131:236:99:3167,0,2417 7 591125 rs71518309 C G 5953.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.68;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5982,475,0 7 618938 rs3211362 A G 5828.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5857,565,0 7 780980 rs6943337 T G 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.098;QD=9.22;ReadPosRankSum=-0.936;SOR=0.934 GT:AD:DP:GQ:PL 0/1:45,39:84:99:803,0,1150 7 794471 rs34761279 A G 1694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.213;SOR=0.758 GT:AD:DP:GQ:PL 0/1:68,68:136:99:1723,0,1594 7 810219 rs4720951 T C 2273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.868;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.882;SOR=0.649 GT:AD:DP:GQ:PL 0/1:113,94:207:99:2302,0,2654 7 814788 rs3922641 G A 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.155;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.788;SOR=0.841 GT:AD:DP:GQ:PL 0/1:79,62:141:99:1679,0,1851 7 881668 rs6461378 C T 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=-1.584;SOR=0.803 GT:AD:DP:GQ:PL 0/1:109,74:183:99:1580,0,2862 7 882829 rs34925195 GT G 1110.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.356;QD=9.18;ReadPosRankSum=-1.199;SOR=0.824 GT:AD:DP:GQ:PL 0/1:61,60:129:99:1148,0,1383 7 892294 rs377260468 C G 2659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.232;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.29;ReadPosRankSum=-0.175;SOR=0.495 GT:AD:DP:GQ:PL 0/1:78,96:174:99:2688,0,1995 7 897492 rs10950789 A G 3065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-1.127;SOR=0.754 GT:AD:DP:GQ:PL 0/1:137,137:274:99:3094,0,3216 7 900035 rs4276575 G A 2665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=1.016;SOR=0.484 GT:AD:DP:GQ:PL 0/1:81,107:188:99:2694,0,2012 7 925717 rs11543222 G A 954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.013;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.69;ReadPosRankSum=-0.357;SOR=0.877 GT:AD:DP:GQ:PL 0/1:29,36:65:99:983,0,636 7 930608 rs11543223 G A 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.79;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=-0.005;SOR=0.96 GT:AD:DP:GQ:PL 0/1:60,42:102:99:1022,0,1288 7 933621 rs117535606 G A 647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=5.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.1;ReadPosRankSum=2.767;SOR=0.537 GT:AD:DP:GQ:PL 0/1:48,32:80:99:676,0,1213 7 940181 rs10256887 C T 3590.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.48;QD=26.4;SOR=1.662 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3619,393,0 7 940258 rs113839920 G GGGCAAAGGCA 5867.73 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.44;QD=44.79;SOR=1.521 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,131:131:99:1|1:940258_G_GGGCAAAGGCA:5905,402,0 7 940267 rs3824079 T C 5496.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=45.43;SOR=1.73 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:940258_G_GGGCAAAGGCA:5525,372,0 7 944683 rs1881121 C T 3484.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.66;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3513,377,0 7 1131356 rs3802141 T C 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.055;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=8.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.84;ReadPosRankSum=-1.259;SOR=1.734 GT:AD:DP:GQ:PL 0/1:34,35:69:99:1052,0,816 7 1131411 rs11544331 C T 1417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=5.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.146;SOR=1.257 GT:AD:DP:GQ:PL 0/1:58,60:118:99:1446,0,1487 7 1132456 rs10246354 C T 2050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.894;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-0.086;SOR=0.586 GT:AD:DP:GQ:PL 0/1:67,85:152:99:2079,0,1504 7 1132505 rs2070118 G A 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.259;SOR=0.351 GT:AD:DP:GQ:PL 0/1:49,60:109:99:1383,0,1297 7 1481919 rs4236408 C A 8231.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8260,880,0 7 1482009 rs61744261 G C 2623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.315;SOR=0.725 GT:AD:DP:GQ:PL 0/1:130,106:236:99:2652,0,3374 7 1482134 rs4457225 C G 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.805;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.314;SOR=1.055 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1404,0,1397 7 1484572 rs10435184 A G 9614.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,317:317:99:9643,951,0 7 1511236 rs200312224 G A 1363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.067;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.335;SOR=0.797 GT:AD:DP:GQ:PL 0/1:50,55:105:99:1392,0,1152 7 1519946 rs7783971 A T 4913.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4942,486,0 7 1522175 rs10224038 A G 7864.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.45;SOR=1.063 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,181:181:99:1|1:1522157_T_C:7893,548,0 7 1532631 rs10229645 G A 1791.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1820,188,0 7 1533513 rs2251226 A G 8383.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8412,815,0 7 1533556 rs2251231 T C 7436.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.02;SOR=1.265 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,177:177:99:1|1:1533556_T_C:7465,538,0 7 1533566 rs2251232 A G 6837.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.28;SOR=1.563 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,151:151:99:1|1:1533556_T_C:6866,475,0 7 1535051 rs892530 A G 6170.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6199,550,0 7 1538595 rs2289034 C A 3709.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.89;SOR=2.486 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,93:93:99:1|1:1538595_C_A:3738,285,0 7 1538614 rs2289035 G A 4429.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.61;SOR=1.923 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:1538595_C_A:4458,361,0 7 1538877 rs750005 A G 7092.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7121,711,0 7 1539799 rs2304357 C T 6633.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6662,626,0 7 1542697 rs3752714 G A 7916.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7945,810,0 7 1542814 rs3752715 T C 4850.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4879,474,0 7 1586653 rs200315697 A AGCC 9851.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.758;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;MQRankSum=0;QD=44.18;ReadPosRankSum=-0.468;SOR=1.21 GT:AD:DP:GQ:PL 1/1:2,221:223:99:9889,593,0 7 1586662 rs3779607 T C 10631.8 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=43.75;SOR=1 GT:AD:DP:GQ:PL 1/1:0,243:243:99:10660,737,0 7 1590443 rs2304361 T C 5635.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=1.415 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5664,525,0 7 1595068 rs17852421 G A 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.564;SOR=0.549 GT:AD:DP:GQ:PL 0/1:98,103:201:99:2464,0,2477 7 1976457 rs1801368 C T 2242.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.849;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=0.361;SOR=0.541 GT:AD:DP:GQ:PL 0/1:145,102:247:99:2271,0,3415 7 2257612 rs6951493 G A 2721.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2750,290,0 7 2296493 rs2302070 A G 5279.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5308,516,0 7 2297006 rs6888 A G 7672.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7701,771,0 7 2303986 rs2286206 T C 5353.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5382,580,0 7 2394746 rs9690787 T C 6676.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6705,618,0 7 2394991 rs11551167 C T 3392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.174;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-0.564;SOR=0.659 GT:AD:DP:GQ:PL 0/1:158,145:303:99:3421,0,3856 7 2515382 rs5881927 G GC 6802.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.57;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.228;MLEAC=2;MLEAF=1;MQ=60.09;MQRankSum=0.186;QD=28.23;ReadPosRankSum=1.792;SOR=0.585 GT:AD:DP:GQ:PL 1/1:3,238:241:99:6840,641,0 7 2577691 rs1043294 C G 3709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.697;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=0.544;SOR=0.823 GT:AD:DP:GQ:PL 0/1:171,147:318:99:3738,0,4172 7 2577781 rs1043291 T C 4332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.901;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=3.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=-1.34;SOR=0.868 GT:AD:DP:GQ:PL 0/1:148,159:307:99:4361,0,3653 7 2578237 rs4719552 T C 7133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.511;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=4.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.87;ReadPosRankSum=2.131;SOR=0.905 GT:AD:DP:GQ:PGT:PID:PL 0/1:193,185:378:99:0|1:2578237_T_C:7162,0,10693 7 2578238 rs4719553 C T 7133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0;DB;DP=384;ExcessHet=3.0103;FS=4.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.58;ReadPosRankSum=2.449;SOR=0.905 GT:AD:DP:GQ:PGT:PID:PL 0/1:198,186:384:99:0|1:2578237_T_C:7162,0,10693 7 2580914 rs62442586 C T 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.056;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=4.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.528;SOR=1.065 GT:AD:DP:GQ:PL 0/1:100,69:169:99:1805,0,2714 7 2583328 rs61753095 C T 5478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DB;DP=461;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-2.035;SOR=0.764 GT:AD:DP:GQ:PL 0/1:229,231:460:99:5507,0,5435 7 2584523 rs34720091 T C 3340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.868;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=2.656;SOR=0.754 GT:AD:DP:GQ:PL 0/1:167,138:305:99:3369,0,3966 7 2587122 rs2164688 T C 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.638;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=2.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.333;SOR=0.918 GT:AD:DP:GQ:PL 0/1:114,81:195:99:1862,0,2760 7 2611878 rs2917751 T C 1915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.218;SOR=0.719 GT:AD:DP:GQ:PL 0/1:65,85:150:99:1944,0,1422 7 2613042 rs2304540 G C 319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.934;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=0.497;SOR=0.738 GT:AD:DP:GQ:PL 0/1:27,14:41:99:348,0,638 7 2623351 rs13242369 G A 835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.681;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=6.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.41;ReadPosRankSum=-1.369;SOR=0.78 GT:AD:DP:GQ:PL 0/1:17,31:48:99:864,0,381 7 2686761 rs3801079 G C 1621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.959;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=3.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.08;ReadPosRankSum=-0.644;SOR=1.176 GT:AD:DP:GQ:PL 0/1:29,56:85:99:1650,0,718 7 2752152 rs798565 G A 3897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.475;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.701;SOR=0.667 GT:AD:DP:GQ:PL 0/1:151,144:295:99:3926,0,3810 7 2752487 rs7776970 G A 3578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=4.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=1.591;SOR=0.958 GT:AD:DP:GQ:PL 0/1:148,144:294:99:3607,0,3831 7 2802522 rs798488 T C 2591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.607;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.693;SOR=0.564 GT:AD:DP:GQ:PL 0/1:99,98:197:99:2620,0,2377 7 2854010 rs2644275 G A 528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.26;ReadPosRankSum=-0.915;SOR=0.593 GT:AD:DP:GQ:PL 0/1:36,28:64:99:557,0,842 7 2946461 rs1124581 T C 4733.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.246 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4762,465,0 7 2949802 rs200456391 G A 1083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=1.441;SOR=0.984 GT:AD:DP:GQ:PL 0/1:35,47:82:99:1112,0,778 7 2957005 rs3735124 T C 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.187;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=0.8;SOR=0.666 GT:AD:DP:GQ:PL 0/1:80,48:128:99:1050,0,1865 7 2962753 rs2527509 G A 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=2.347;SOR=0.545 GT:AD:DP:GQ:PL 0/1:75,65:140:99:1606,0,1901 7 3341390 rs10228086 T C 1439.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=1.755 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1468,147,0 7 4172006 rs13224870 C T 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.201;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.942;SOR=0.558 GT:AD:DP:GQ:PL 0/1:61,76:137:99:1827,0,1423 7 4189075 rs659182 G C 1636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.698;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=0.135;SOR=0.73 GT:AD:DP:GQ:PL 0/1:94,68:162:99:1665,0,2412 7 4213877 rs601424 T C 1503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-1.601;SOR=0.601 GT:AD:DP:GQ:PL 0/1:84,71:155:99:1532,0,1981 7 4213940 rs671756 T C 1695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.243;SOR=0.881 GT:AD:DP:GQ:PL 0/1:86,79:165:99:1724,0,2072 7 4213975 rs671694 A G 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.157;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.451;SOR=0.932 GT:AD:DP:GQ:PL 0/1:77,65:142:99:1546,0,1930 7 4215403 rs112491467 A G 977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.913;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-1.198;SOR=0.856 GT:AD:DP:GQ:PL 0/1:47,41:88:99:1006,0,1110 7 4780514 rs3087749 G T 2556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=5.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-1.077;SOR=0.461 GT:AD:DP:GQ:PL 0/1:134,115:249:99:2585,0,3193 7 4802029 rs6976790 T G 10794.8 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.42;SOR=1.155 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,243:243:99:1|1:4802029_T_G:10823,734,0 7 4802035 rs1053753 A G 10810.8 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.31;SOR=1.119 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,244:244:99:1|1:4802029_T_G:10839,734,0 7 4823971 rs17135121 C T 3591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0;QD=14.78;ReadPosRankSum=-0.052;SOR=0.672 GT:AD:DP:GQ:PL 0/1:108,135:243:99:3620,0,2916 7 4825307 rs11772411 T A 5239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=5.795;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-1.056;QD=20.15;ReadPosRankSum=-0.485;SOR=1.022 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,138:260:99:0|1:4825307_T_A:5268,0,4605 7 4825314 rs11768079 C T 5186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=6.816;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-1.044;QD=20.34;ReadPosRankSum=-0.077;SOR=1.061 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,134:255:99:0|1:4825307_T_A:5215,0,4551 7 4827330 rs17135128 C T 2843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.416;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-1.07;SOR=0.703 GT:AD:DP:GQ:PL 0/1:151,118:269:99:2872,0,3696 7 4828593 rs3750012 T C 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.899;SOR=0.529 GT:AD:DP:GQ:PL 0/1:79,84:163:99:1848,0,1769 7 4829449 rs118139547 C T 2193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.59;ReadPosRankSum=0.031;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,58:118:99:0|1:4829449_C_T:2222,0,2960 7 4829458 rs184752711 C T 2215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.272;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.79;ReadPosRankSum=1.616;SOR=0.695 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,61:132:99:0|1:4829449_C_T:2244,0,3254 7 4839784 rs6977412 G A 4220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.59;ReadPosRankSum=1.445;SOR=0.824 GT:AD:DP:GQ:PGT:PID:PL 0/1:130,110:240:99:0|1:4839781_C_T:4249,0,6704 7 4839882 rs3816854 T C 3533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=4.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-2.04;SOR=0.929 GT:AD:DP:GQ:PL 0/1:146,155:301:99:3562,0,3361 7 4841313 rs6966329 A G 3143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.427;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=0.083;SOR=0.639 GT:AD:DP:GQ:PL 0/1:173,131:304:99:3172,0,4302 7 4841470 rs414035 T C 10084.8 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,328:328:99:10113,984,0 7 4845312 rs2306919 T G 3224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-1.827;SOR=0.678 GT:AD:DP:GQ:PL 0/1:135,136:271:99:3253,0,3272 7 4874420 rs2292498 G C 3824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.734;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.769;SOR=0.695 GT:AD:DP:GQ:PL 0/1:159,163:322:99:3853,0,4131 7 4874735 rs148761575 C T 4759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DB;DP=352;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-0.451;SOR=0.657 GT:AD:DP:GQ:PL 0/1:162,189:351:99:4788,0,3915 7 4876057 rs3763384 C T 3243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.541;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-1.748;SOR=0.625 GT:AD:DP:GQ:PL 0/1:178,144:322:99:3272,0,4823 7 4900095 rs1553960 A G 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=1.08;SOR=0.654 GT:AD:DP:GQ:PL 0/1:69,74:143:99:1825,0,1637 7 4900341 rs17135247 G A 1006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=4.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=0.59;SOR=0.872 GT:AD:DP:GQ:PL 0/1:60,48:108:99:1035,0,1561 7 4901385 rs3750009 A C 1814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.527;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.235;SOR=0.656 GT:AD:DP:GQ:PL 0/1:80,74:154:99:1843,0,1880 7 4950853 rs77179989 G C 1033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.962;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.737;QD=8.14;ReadPosRankSum=-1.941;SOR=0.946 GT:AD:DP:GQ:PL 0/1:81,46:127:99:1062,0,2099 7 5096958 rs11975068 T C 3478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.644;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=-1.045;QD=10.7;ReadPosRankSum=0.177;SOR=0.778 GT:AD:DP:GQ:PL 0/1:178,147:325:99:3507,0,4067 7 5104275 rs12674330 G A 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.921;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.617;SOR=0.67 GT:AD:DP:GQ:PL 0/1:105,91:196:99:2452,0,2643 7 5104359 rs12668616 G A 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.282;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=7.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=1.108;SOR=0.563 GT:AD:DP:GQ:PL 0/1:111,103:214:99:2597,0,2706 7 5105133 rs12334144 C T 1962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.208;SOR=0.489 GT:AD:DP:GQ:PL 0/1:69,84:153:99:1991,0,1673 7 5105208 rs36026500 C T 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=-0.363;SOR=0.649 GT:AD:DP:GQ:PL 0/1:49,65:114:99:1549,0,1245 7 5254227 rs4587243 C G 6501.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6530,618,0 7 5331307 rs12667188 A G 5444.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.67;QD=33;SOR=1.172 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5473,495,0 7 5334472 rs10623123 C CCT 2462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.38;ReadPosRankSum=1.017;SOR=0.551 GT:AD:DP:GQ:PL 0/1:38,63:108:99:2491,0,2281 7 5334582 rs59119551 C T 2115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-1.281;SOR=0.749 GT:AD:DP:GQ:PL 0/1:95,100:195:99:2144,0,2128 7 5338714 rs6950111 T C 4088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=0.381;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.031;QD=11.39;ReadPosRankSum=-0.729;SOR=0.666 GT:AD:DP:GQ:PL 0/1:184,175:359:99:4117,0,4205 7 5338770 rs6946155 A G 3344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.392;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.02;QD=13.33;ReadPosRankSum=1.666;SOR=0.681 GT:AD:DP:GQ:PL 0/1:127,124:251:99:3373,0,3516 7 5339049 rs142638970 C T 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=6.325;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=-0.608;QD=10.7;ReadPosRankSum=0.722;SOR=1.138 GT:AD:DP:GQ:PL 0/1:97,85:182:99:1975,0,2459 7 5347749 rs9639976 G A 3016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.05;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=0.515;SOR=0.527 GT:AD:DP:GQ:PL 0/1:102,121:223:99:3045,0,2282 7 5347914 rs11554710 G A 2070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.5;MQ=57.28;MQRankSum=4.789;QD=11.07;ReadPosRankSum=0.588;SOR=0.793 GT:AD:DP:GQ:PL 0/1:92,95:187:99:2099,0,2184 7 5352790 rs374450776 CGCT C 87.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=5.468;QD=0.58;ReadPosRankSum=-2.561;SOR=0.536 GT:AD:DP:GQ:PL 0/1:137,14:151:99:125,0,5598 7 5372406 rs13238738 G T 4303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.939;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-1.732;SOR=0.75 GT:AD:DP:GQ:PL 0/1:158,174:332:99:4332,0,4453 7 5396715 rs35508364 T C 3142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.872;SOR=0.672 GT:AD:DP:GQ:PL 0/1:104,128:232:99:3171,0,2395 7 5399044 rs12531309 C G 2024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=1.402;SOR=0.663 GT:AD:DP:GQ:PL 0/1:83,90:173:99:2053,0,1942 7 5410425 rs12671708 G C 3890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.044;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=1.282;SOR=0.678 GT:AD:DP:GQ:PL 0/1:133,154:287:99:3919,0,3186 7 5410916 rs10215902 G C 3771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=1.034;SOR=0.709 GT:AD:DP:GQ:PL 0/1:178,168:346:99:3800,0,4116 7 5427652 rs4720623 G A 3834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.053;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.503;SOR=0.655 GT:AD:DP:GQ:PL 0/1:148,151:299:99:3863,0,3740 7 5427720 rs4724663 A G 9260.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,295:295:99:9289,884,0 7 5434135 rs4724668 A G 4433.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4462,423,0 7 5540769 rs6953642 A C 9946.77 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9975,948,0 7 5541657 rs4724704 G A 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.301;SOR=0.88 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1333,0,1208 7 5568366 rs852423 A G 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.29;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=3.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=1.07;SOR=0.485 GT:AD:DP:GQ:PL 0/1:75,72:147:99:2035,0,1810 7 5959485 rs200812052 G A 741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.171;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=43.15;MQRankSum=-3.1;QD=4.82;ReadPosRankSum=1.661;SOR=0.596 GT:AD:DP:GQ:PL 0/1:107,47:154:99:770,0,2953 7 5965334 rs150333500 C T 1672.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.633;MLEAC=1;MLEAF=0.5;MQ=32.58;MQRankSum=-0.417;QD=15.21;ReadPosRankSum=-0.349;SOR=0.871 GT:AD:DP:GQ:PL 0/1:40,70:110:99:1701,0,832 7 5983012 rs150999559 A G 3453.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.95;QD=36.74;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3482,282,0 7 5983553 rs80120223 A C 1158.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.94;QD=32.19;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1187,108,0 7 5984721 rs201017159 C T 55.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.21;MQRankSum=0.792;QD=7.97;ReadPosRankSum=-0;SOR=0.495 GT:AD:DP:GQ:PL 0/1:4,3:7:84:84,0,106 7 5997641 rs201932419 A G 111.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.115;ClippingRankSum=0;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.5;MQ=37.35;MQRankSum=-0.931;QD=6.57;ReadPosRankSum=-0.637;SOR=0.16 GT:AD:DP:GQ:PL 0/1:12,5:17:99:140,0,407 7 6026384 rs111905775 C T 419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.625;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.5;MQ=57.78;MQRankSum=1.76;QD=8.93;ReadPosRankSum=1.602;SOR=1.154 GT:AD:DP:GQ:PL 0/1:31,16:47:99:448,0,702 7 6026775 rs2228006 T C 5358.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.83;QD=31.71;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5387,507,0 7 6026865 rs2228007 T C 2670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.06;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=1.578;QD=13.03;ReadPosRankSum=-0.024;SOR=0.687 GT:AD:DP:GQ:PL 0/1:92,113:205:99:2699,0,2174 7 6026942 rs1805323 G T 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-1.089;QD=10.31;ReadPosRankSum=-0.114;SOR=0.579 GT:AD:DP:GQ:PL 0/1:110,91:201:99:2100,0,2742 7 6036980 rs1805319 G C 927.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,30:30:90:956,90,0 7 6037057 rs60794673 GA G 178.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=1.265;QD=9.93;ReadPosRankSum=1.691;SOR=0.976 GT:AD:DP:GQ:PL 0/1:6,12:20:84:216,0,84 7 6054987 rs6979676 G A 1696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.493;SOR=0.56 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1725,0,1983 7 6066450 rs2640 T C 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.052;SOR=0.64 GT:AD:DP:GQ:PL 0/1:90,85:175:99:1859,0,2002 7 6066461 rs2639 T C 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.106;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.659;SOR=0.74 GT:AD:DP:GQ:PL 0/1:97,86:183:99:1845,0,2162 7 6080853 rs34743814 GA G 884.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.966;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.91;QD=9.12;ReadPosRankSum=-0.573;SOR=0.859 GT:AD:DP:GQ:PL 0/1:46,51:104:99:922,0,954 7 6086610 rs41282676 C G 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.27;SOR=0.706 GT:AD:DP:GQ:PL 0/1:48,61:109:99:1558,0,1106 7 6088420 rs3213665 A G 504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=0.579;SOR=0.484 GT:AD:DP:GQ:PL 0/1:32,26:58:99:533,0,763 7 6193521 rs61729726 G C 4753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DB;DP=403;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=2.522;SOR=0.623 GT:AD:DP:GQ:PL 0/1:211,191:402:99:4782,0,5429 7 6194274 rs6463529 T C 4396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-0.517;SOR=0.667 GT:AD:DP:GQ:PL 0/1:162,170:332:99:4425,0,3904 7 6204999 rs2301910 A C 3429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=0.382;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.438;SOR=0.728 GT:AD:DP:GQ:PL 0/1:204,159:363:99:3458,0,4905 7 6370194 rs6952125 C T 6783.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6812,690,0 7 6370305 rs3750039 C G 7680.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=33.99;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7709,679,0 7 6370406 rs3750040 C T 8127.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=30.33;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8156,803,0 7 6431690 rs836478 C T 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.573;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.645;SOR=0.836 GT:AD:DP:GQ:PL 0/1:57,46:103:99:1075,0,1355 7 6449496 rs2303361 T C 3194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.395;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.924;SOR=0.855 GT:AD:DP:GQ:PL 0/1:159,131:290:99:3223,0,3721 7 6456347 rs1055428 G T 4013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.63;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=0.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-0.834;SOR=0.746 GT:AD:DP:GQ:PL 0/1:206,176:382:99:4042,0,4682 7 6485740 . CA C 209.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.405;ClippingRankSum=0;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.517;QD=1.87;ReadPosRankSum=0.136;SOR=0.639 GT:AD:DP:GQ:PL 0/1:90,22:130:99:247,0,2098 7 6505901 rs2230263 T C 5339.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5368,537,0 7 6537821 rs6463568 G C 4883.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.34;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4912,452,0 7 6547902 rs112305062 G A 910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.762;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=6.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=1.121;SOR=1.758 GT:AD:DP:GQ:PL 0/1:53,59:112:99:939,0,1269 7 6566322 rs2881723 T G 1822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.425;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.856;SOR=0.784 GT:AD:DP:GQ:PL 0/1:75,72:147:99:1851,0,1946 7 6590693 rs6463571 G A 9034.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9063,914,0 7 6591041 rs4724818 C G 6500.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6529,612,0 7 6647738 rs4416743 T C 5120.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=3.244 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5149,476,0 7 6683454 rs2253869 A G 1887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.002;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-1.117;SOR=0.615 GT:AD:DP:GQ:PL 0/1:76,77:153:99:1916,0,1953 7 6692605 rs1474419 T C 9890.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9919,930,0 7 6693438 rs6979882 C T 3153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=1.388;SOR=0.733 GT:AD:DP:GQ:PL 0/1:115,133:248:99:3182,0,2756 7 6694210 rs2464876 C A 3054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=1.053;SOR=0.631 GT:AD:DP:GQ:PL 0/1:142,131:273:99:3083,0,3520 7 6694259 rs2249765 A G 2314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.323;SOR=0.718 GT:AD:DP:GQ:PL 0/1:116,98:214:99:2343,0,2913 7 6797520 rs201352760 G C 53.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.033;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=42.803;MLEAC=1;MLEAF=0.5;MQ=46.45;MQRankSum=-6.667;QD=0.27;ReadPosRankSum=-4.167;SOR=3.906 GT:AD:DP:GQ:PL 0/1:175,22:197:82:82,0,4343 7 6845671 rs200484966 G A 378.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=32.59;MQRankSum=-0.893;QD=5.19;ReadPosRankSum=0.259;SOR=0.471 GT:AD:DP:GQ:PL 0/1:53,20:73:99:407,0,1421 7 6865838 rs71524081 G A 35.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.8;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=13.864;MLEAC=1;MLEAF=0.5;MQ=27.96;MQRankSum=-1.685;QD=0.81;ReadPosRankSum=0.133;SOR=3.68 GT:AD:DP:GQ:PL 0/1:34,10:44:64:64,0,810 7 7571094 rs7804532 G C 2182.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2211,221,0 7 7646651 rs7806046 G T 3395.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3424,342,0 7 7646687 rs4222 A G 3408.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3437,357,0 7 8008970 rs7786263 C G 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=1.889;SOR=0.49 GT:AD:DP:GQ:PL 0/1:85,70:155:99:1640,0,2116 7 8125964 rs929509 C T 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.621;SOR=0.541 GT:AD:DP:GQ:PL 0/1:86,80:166:99:2047,0,2184 7 11022230 rs218966 A G 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.407;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-1.514;SOR=0.784 GT:AD:DP:GQ:PL 0/1:36,33:69:99:906,0,947 7 11022564 rs218965 G A 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=1.284;SOR=0.606 GT:AD:DP:GQ:PL 0/1:48,56:104:99:1432,0,1250 7 11075263 rs2353340 A G 743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.168;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=1.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.5;ReadPosRankSum=0.601;SOR=0.525 GT:AD:DP:GQ:PL 0/1:21,27:48:99:772,0,511 7 11486939 rs1432 G A 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-1.468;SOR=0.7 GT:AD:DP:GQ:PL 0/1:107,79:186:99:1726,0,2567 7 11509561 rs2285744 G C 970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.247;SOR=0.525 GT:AD:DP:GQ:PL 0/1:49,42:91:99:999,0,1140 7 11521542 rs3735502 T C 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.274;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-1.741;SOR=0.577 GT:AD:DP:GQ:PL 0/1:126,115:241:99:2621,0,2892 7 11581121 rs47 T C 5916.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5945,564,0 7 12370794 rs1059002 T C 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.321;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.056;QD=11.39;ReadPosRankSum=-0.524;SOR=0.469 GT:AD:DP:GQ:PL 0/1:37,35:72:99:848,0,910 7 12373082 rs6460929 C T 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=0;SOR=0.645 GT:AD:DP:GQ:PL 0/1:23,33:56:99:821,0,578 7 12376811 rs2192828 A C 1646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.418;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.54;ReadPosRankSum=0.326;SOR=0.765 GT:AD:DP:GQ:PL 0/1:45,61:106:99:1675,0,1071 7 12391268 rs11454536 T TA 2025.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.928;QD=17.02;ReadPosRankSum=-1.1;SOR=0.774 GT:AD:DP:GQ:PL 0/1:54,65:119:99:2063,0,1532 7 12391319 rs6967385 G T 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.959;QD=12.4;ReadPosRankSum=0.47;SOR=0.663 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1194,0,1043 7 12395813 rs2119141 T C 1676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.054;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=1.635;SOR=0.619 GT:AD:DP:GQ:PL 0/1:87,69:156:99:1705,0,2101 7 12399190 rs4721093 A G 753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.893;SOR=0.811 GT:AD:DP:GQ:PL 0/1:44,33:77:99:782,0,996 7 12400783 rs35171886 C T 276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.54;ReadPosRankSum=-0.198;SOR=1.008 GT:AD:DP:GQ:PL 0/1:44,17:61:99:305,0,1055 7 12400837 rs2053380 G A 1821.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1850,197,0 7 12401021 rs80272295 C T 1450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=2.793;SOR=0.819 GT:AD:DP:GQ:PL 0/1:70,63:133:99:1479,0,1747 7 12406989 rs6460939 C G 884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.232;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.583;SOR=0.604 GT:AD:DP:GQ:PL 0/1:45,35:80:99:913,0,1181 7 12409263 rs17165906 C A 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.425;SOR=0.569 GT:AD:DP:GQ:PL 0/1:89,93:182:99:2258,0,2298 7 12409327 rs17165910 C T 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=1.118;SOR=0.766 GT:AD:DP:GQ:PL 0/1:100,83:183:99:2023,0,2708 7 12409522 rs3823844 A G 2249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.501;SOR=0.867 GT:AD:DP:GQ:PL 0/1:134,93:227:99:2278,0,3423 7 12409535 rs3801366 A G 2325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.352;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=4.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.043;SOR=0.852 GT:AD:DP:GQ:PL 0/1:140,106:246:99:2354,0,3644 7 12410112 rs963323 G A 4378.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4407,447,0 7 12410362 rs1072557 C T 2104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.925;SOR=0.79 GT:AD:DP:GQ:PL 0/1:92,94:186:99:2133,0,2151 7 12414620 rs6945357 G T 1292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=0.965;SOR=1.092 GT:AD:DP:GQ:PL 0/1:44,49:93:99:1321,0,1218 7 12414725 rs17165936 G A 1646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.511;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.807;SOR=0.554 GT:AD:DP:GQ:PL 0/1:87,74:161:99:1675,0,2019 7 12417407 rs7793993 C T 1486.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=1.814 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1515,141,0 7 12419108 rs6967241 A T 3260.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.17;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3289,359,0 7 12420092 rs1025787 G C 4307.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4336,444,0 7 12428803 rs848016 G A 934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=1.528;SOR=0.647 GT:AD:DP:GQ:PL 0/1:57,40:97:99:963,0,1546 7 12433347 rs17165995 C T 1610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.071;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.037;SOR=0.715 GT:AD:DP:GQ:PL 0/1:90,72:162:99:1639,0,1982 7 12610594 rs2240572 A G 2569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.392;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.149;SOR=0.765 GT:AD:DP:GQ:PL 0/1:117,98:215:99:2598,0,2877 7 12620804 rs17283717 C T 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-2.359;SOR=0.719 GT:AD:DP:GQ:PL 0/1:70,71:141:99:1610,0,1646 7 12684340 rs2691810 C T 4034.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=1.277 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4063,393,0 7 12728489 rs112853446 A G 1624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.829;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.5;MQ=56;MQRankSum=-0.278;QD=11.95;ReadPosRankSum=2.252;SOR=0.997 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1653,0,1816 7 14025727 rs3823704 C T 909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.062;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.236;SOR=1.239 GT:AD:DP:GQ:PL 0/1:40,37:77:99:938,0,1018 7 14025766 rs10215655 T A 1219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.462;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-0.819;SOR=0.981 GT:AD:DP:GQ:PL 0/1:44,51:95:99:1248,0,1030 7 14216442 rs17167945 A G 1813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.849;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.511;SOR=1.016 GT:AD:DP:GQ:PL 0/1:78,72:150:99:1842,0,1934 7 14217673 rs6966154 G A 1720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.227;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=4.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=1.749;SOR=1.014 GT:AD:DP:GQ:PL 0/1:95,78:173:99:1749,0,2247 7 14758273 rs1997040 C T 1006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.365;SOR=0.619 GT:AD:DP:GQ:PL 0/1:48,46:94:99:1035,0,1119 7 14775821 rs139628753 TG T 1246 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.6;ReadPosRankSum=0.097;SOR=0.96 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,59:67:12:0|1:14775821_TG_T:1283,0,12 7 14775824 rs80024169 A C 1255.03 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.07;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.73;ReadPosRankSum=0.039;SOR=0.96 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,59:67:12:0|1:14775821_TG_T:1283,0,12 7 15458293 . TA T 352.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.92;QD=10.69;ReadPosRankSum=0.786;SOR=0.76 GT:AD:DP:GQ:PL 0/1:14,19:33:99:390,0,300 7 15725797 rs113582077 ATGG A 14560.7 PASS AC=2;AF=1;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=44.26;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,329:339:99:14598,995,0 7 16445673 rs6461252 A T 706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.41;ReadPosRankSum=-0.405;SOR=1.011 GT:AD:DP:GQ:PL 0/1:51,33:84:99:735,0,1294 7 16607177 rs11379958 T TA 450.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.77;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.63;QD=12.18;ReadPosRankSum=-2.109;SOR=0.49 GT:AD:DP:GQ:PL 0/1:9,28:37:70:488,0,70 7 16666741 rs11532682 T G 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.444;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=-1.904;SOR=0.67 GT:AD:DP:GQ:PL 0/1:86,51:137:99:1133,0,1925 7 16666759 rs11531477 G C 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.502;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.71;ReadPosRankSum=-1.466;SOR=0.587 GT:AD:DP:GQ:PL 0/1:80,46:126:99:1000,0,1867 7 16676082 . TA T 289.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.848;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.17;ReadPosRankSum=-1.71;SOR=0.643 GT:AD:DP:GQ:PL 0/1:37,19:65:99:327,0,827 7 16705132 . TTG T 67.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DP=208;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=2.582;QD=0.38;ReadPosRankSum=1.028;SOR=0.598 GT:AD:DP:GQ:PL 0/1:158,18:182:99:105,0,5072 7 16823095 rs11491 G A 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=0.705;SOR=0.712 GT:AD:DP:GQ:PL 0/1:78,62:140:99:1278,0,1745 7 16834551 rs4719480 C A 1551.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.75;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1580,173,0 7 16834597 rs6842 A G 666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-1.538;SOR=0.907 GT:AD:DP:GQ:PL 0/1:43,34:77:99:695,0,944 7 16899197 rs11798 C T 907.77 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,32:32:96:936,96,0 7 16913394 rs10249749 A G 2696.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.24;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2725,293,0 7 18066569 rs3800962 C A 2447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.71;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.24;SOR=0.597 GT:AD:DP:GQ:PL 0/1:95,109:204:99:2476,0,2379 7 18767343 rs1178127 A G 2043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.989;SOR=0.675 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2072,0,2390 7 18993870 rs2389998 C T 1340.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1369,126,0 7 20180717 rs3735615 C G 721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=0.694;SOR=0.617 GT:AD:DP:GQ:PL 0/1:51,32:83:99:750,0,1447 7 20198440 rs975263 G A 1993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-0.33;SOR=0.67 GT:AD:DP:GQ:PL 0/1:83,82:165:99:2022,0,2185 7 20201395 rs4721888 G C 827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.634;SOR=0.493 GT:AD:DP:GQ:PL 0/1:34,34:68:99:856,0,902 7 20403353 rs35420999 AT A 1313.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=1.961;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=20.85;ReadPosRankSum=-0.607;SOR=0.374 GT:AD:DP:GQ:PL 1/1:4,59:63:80:1351,80,0 7 20406757 . T G 771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.947;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.156;SOR=0.711 GT:AD:DP:GQ:PL 0/1:37,33:70:99:800,0,863 7 20418926 rs1042277 T C 862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.047;SOR=0.39 GT:AD:DP:GQ:PL 0/1:37,38:75:99:891,0,962 7 20421490 rs2230398 T C 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=1.044;SOR=0.839 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1183,0,1377 7 20739774 rs5882753 AT A 1564.73 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=24.45;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1602,192,0 7 20768013 rs10254317 G A 2584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.033;SOR=0.615 GT:AD:DP:GQ:PL 0/1:102,114:216:99:2613,0,2224 7 20778646 rs6461515 G A 2394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.344;SOR=0.647 GT:AD:DP:GQ:PL 0/1:106,103:209:99:2423,0,2612 7 20778773 rs6461516 C G 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-1.622;SOR=0.881 GT:AD:DP:GQ:PL 0/1:102,74:176:99:1763,0,2572 7 20824614 rs34908430 C T 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.981;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.493;SOR=0.628 GT:AD:DP:GQ:PL 0/1:152,119:271:99:3068,0,3770 7 21582963 rs2285943 G T 14931.8 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.71;SOR=0.833 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,334:334:99:1|1:21582963_G_T:14960,1009,0 7 21582964 rs2285944 A T 14931.8 PASS AC=2;AF=1;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=0.84 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,333:333:99:1|1:21582963_G_T:14960,1009,0 7 21599233 rs10950854 C T 2834.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=1.298 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2863,294,0 7 21600745 rs72655977 C T 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.554;SOR=0.57 GT:AD:DP:GQ:PL 0/1:40,47:87:99:1075,0,943 7 21609691 rs72655982 C T 1067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=1.52;SOR=0.544 GT:AD:DP:GQ:PL 0/1:46,49:95:99:1096,0,1180 7 21621631 rs72655988 G A 495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.98;ReadPosRankSum=-1.687;SOR=0.586 GT:AD:DP:GQ:PL 0/1:46,25:71:99:524,0,1207 7 21628197 rs12670130 A G 1399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=12.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=0.381;SOR=0.99 GT:AD:DP:GQ:PL 0/1:73,62:135:99:1428,0,1707 7 21628237 rs6963535 C T 4569.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.98;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4598,382,0 7 21628242 rs62441683 C G 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.107;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=0.325;SOR=0.466 GT:AD:DP:GQ:PL 0/1:69,53:122:99:1448,0,1806 7 21630982 rs4615458 A G 6447.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6476,651,0 7 21639572 rs17144747 A G 1797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=8.386;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.877;SOR=1.15 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1826,0,1879 7 21640405 rs10224537 A G 6131.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6160,621,0 7 21640618 rs17745898 C G 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.274;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=7.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.225;SOR=1.239 GT:AD:DP:GQ:PL 0/1:90,61:151:99:1628,0,2440 7 21641218 rs3827657 G A 3278.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3307,306,0 7 21658855 rs57208694 A G 4480.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4509,461,0 7 21659554 rs112373177 A ATTAAT 1153.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.728;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=9.813;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.145;QD=17.75;ReadPosRankSum=-0.495;SOR=1.933 GT:AD:DP:GQ:PL 0/1:36,29:65:99:1191,0,2383 7 21659645 rs56029521 T C 1449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.178;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.491;QD=11.79;ReadPosRankSum=-0.545;SOR=0.822 GT:AD:DP:GQ:PL 0/1:64,59:123:99:1478,0,1407 7 21678643 rs17144835 A G 1562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.714;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=1.905;SOR=1.033 GT:AD:DP:GQ:PL 0/1:92,66:158:99:1591,0,2267 7 21744039 rs2965401 T G 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.985;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.083;SOR=0.538 GT:AD:DP:GQ:PL 0/1:59,52:111:99:1277,0,1540 7 21745061 rs1023542 A G 1898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=0.45;SOR=0.827 GT:AD:DP:GQ:PL 0/1:53,83:136:99:1927,0,1166 7 21765452 rs12536928 C T 1067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=0.117;SOR=0.725 GT:AD:DP:GQ:PL 0/1:49,45:94:99:1096,0,1370 7 21775443 rs2072221 G A 2497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=1.605;SOR=0.573 GT:AD:DP:GQ:PL 0/1:87,107:194:99:2526,0,2095 7 21778449 rs1109806 C T 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.37;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.21;ReadPosRankSum=1.439;SOR=0.714 GT:AD:DP:GQ:PL 0/1:101,70:171:99:1432,0,2530 7 21781653 rs72657364 A G 1701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.37;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.566;SOR=0.648 GT:AD:DP:GQ:PL 0/1:100,71:171:99:1730,0,2415 7 21824122 rs6965750 G A 1073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.222;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=4.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.95;ReadPosRankSum=0.384;SOR=0.975 GT:AD:DP:GQ:PL 0/1:86,49:135:99:1102,0,2197 7 21856151 rs2214326 G A 2312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.143;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.245;SOR=0.733 GT:AD:DP:GQ:PL 0/1:113,104:217:99:2341,0,2619 7 21893993 rs4722064 G T 4811.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4840,504,0 7 21901566 rs4722067 T C 5867.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5896,600,0 7 21907458 rs4995598 A G 3464.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=42.25;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,82:82:99:1|1:21907452_G_GT:3493,247,0 7 21924014 rs6461613 A G 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=-0.01;SOR=0.761 GT:AD:DP:GQ:PL 0/1:45,78:123:99:1799,0,995 7 21932044 rs12537531 C T 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.882;SOR=0.669 GT:AD:DP:GQ:PL 0/1:92,76:168:99:1825,0,2394 7 21956405 rs1128250 G A 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.702;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=0.981;SOR=0.554 GT:AD:DP:GQ:PL 0/1:63,45:108:99:1065,0,1470 7 22197507 rs7809342 A G 2901.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2930,288,0 7 22202117 rs12592 G A 1544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.57;SOR=0.574 GT:AD:DP:GQ:PL 0/1:72,67:139:99:1573,0,1888 7 22330862 rs367948789 TA T 346.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.69;ReadPosRankSum=0.723;SOR=0.565 GT:AD:DP:GQ:PL 0/1:50,24:80:99:384,0,1031 7 22857682 rs28617621 A G 428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.504;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.5;ReadPosRankSum=0.052;SOR=0.807 GT:AD:DP:GQ:PL 0/1:43,23:66:99:457,0,980 7 23015831 rs3735231 T C 364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.236;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.9;ReadPosRankSum=0.296;SOR=1.053 GT:AD:DP:GQ:PL 0/1:23,18:41:99:393,0,527 7 23357321 rs156414 C T 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.697;SOR=0.529 GT:AD:DP:GQ:PL 0/1:40,47:87:99:1075,0,900 7 23737795 rs5029444 T C 763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.054;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.25;ReadPosRankSum=-1.586;SOR=0.693 GT:AD:DP:GQ:PL 0/1:15,32:47:99:792,0,298 7 23740501 rs10244532 G C 277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.552;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.45;ReadPosRankSum=-0.721;SOR=1.179 GT:AD:DP:GQ:PL 0/1:38,13:51:99:306,0,929 7 23751736 rs7779633 A G 1756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.511;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=0.98;SOR=0.711 GT:AD:DP:GQ:PL 0/1:52,63:115:99:1785,0,1239 7 23810605 rs1469000 T C 738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=5.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.04;ReadPosRankSum=-0.354;SOR=1.216 GT:AD:DP:GQ:PL 0/1:66,39:105:99:767,0,1642 7 23854838 rs5882915 G GA 1161.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.287;QD=17.08;ReadPosRankSum=1.199;SOR=1.04 GT:AD:DP:GQ:PL 0/1:30,38:68:99:1199,0,918 7 23871898 rs35517396 A G 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.088;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.5;MQ=60.52;MQRankSum=-2.234;QD=11.4;ReadPosRankSum=-0.15;SOR=0.621 GT:AD:DP:GQ:PL 0/1:81,85:166:99:1920,0,1687 7 25182405 rs11984293 G T 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0;SOR=0.543 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1421,0,1544 7 25194618 rs2523073 G A 1114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.324;SOR=0.972 GT:AD:DP:GQ:PL 0/1:58,47:105:99:1143,0,1507 7 25194665 rs2523072 G C 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.739;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.204;SOR=0.743 GT:AD:DP:GQ:PL 0/1:83,73:156:99:1828,0,2190 7 25194753 rs12535348 C T 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.115;SOR=0.604 GT:AD:DP:GQ:PL 0/1:81,77:158:99:1727,0,1953 7 25266400 rs2717851 G A 2747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-2.62;SOR=0.85 GT:AD:DP:GQ:PL 0/1:103,113:216:99:2776,0,2478 7 25267963 rs886354 G C 2344.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2373,234,0 7 26251843 rs9768418 C T 44.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.79;MLEAC=1;MLEAF=0.5;MQ=58.92;MQRankSum=-2.316;QD=0.62;ReadPosRankSum=0.788;SOR=0.554 GT:AD:DP:GQ:PL 0/1:61,11:72:73:73,0,1700 7 26685934 rs12671270 T C 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=0.346;SOR=0.636 GT:AD:DP:GQ:PL 0/1:77,57:134:99:1195,0,1880 7 26778406 rs10951145 A G 1096.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.75;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1125,122,0 7 26883761 . TA T 44.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.36;ReadPosRankSum=0.069;SOR=0.97 GT:AD:DP:GQ:PL 0/1:25,8:36:82:82,0,573 7 27135096 rs45571645 G T 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-1.241;SOR=0.71 GT:AD:DP:GQ:PL 0/1:100,117:217:99:2819,0,2349 7 27135314 rs10951154 C T 4024.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=3.911;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.65;ReadPosRankSum=0.145;SOR=1.609 GT:AD:DP:GQ:PL 1/1:6,145:151:99:4053,199,0 7 27169093 rs2158218 T G 6712.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6741,651,0 7 27169934 rs10251056 A G 5044.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.063;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.16;ReadPosRankSum=1.49;SOR=0.803 GT:AD:DP:GQ:PL 1/1:2,171:173:99:5073,428,0 7 27170145 rs6944345 T G 6901.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.25;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6930,643,0 7 27196069 rs2301720 A C 5749.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5778,546,0 7 27196113 rs2301721 C T 6237.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.35;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,167:167:99:6266,501,0 7 27196116 rs78410337 C T 2001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-2.553;SOR=0.577 GT:AD:DP:GQ:PL 0/1:74,91:165:99:2030,0,1633 7 27827103 rs11540483 T A 3985.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4014,422,0 7 28995800 rs61742220 G A 3217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.705;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.548;SOR=0.851 GT:AD:DP:GQ:PL 0/1:115,124:239:99:3246,0,3270 7 28996557 rs3735562 C T 3315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.624;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=0.775;SOR=0.708 GT:AD:DP:GQ:PL 0/1:121,132:253:99:3344,0,3230 7 28996944 rs740250 T C 4512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.973;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=1.418;SOR=0.746 GT:AD:DP:GQ:PL 0/1:181,173:354:99:4541,0,4350 7 28997141 rs6950750 G C 3646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.292;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=1.218;SOR=0.728 GT:AD:DP:GQ:PL 0/1:144,128:272:99:3675,0,3996 7 28997497 rs67010340 GC G 11121.7 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.2;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,299:299:99:11159,900,0 7 28997596 rs5883174 G GC 11643.7 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.03;QD=36.96;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,315:315:99:11681,948,0 7 29070320 rs1052200 C T 1200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.22;ReadPosRankSum=-0.898;SOR=0.689 GT:AD:DP:GQ:PL 0/1:89,57:146:99:1229,0,2206 7 29103867 rs644763 T C 2150.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.091;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;MQRankSum=0.297;QD=29.06;ReadPosRankSum=-1.134;SOR=1.148 GT:AD:DP:GQ:PL 1/1:2,72:74:99:2179,173,0 7 29132279 rs117744081 A G 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.104;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.87;ReadPosRankSum=1.017;SOR=0.953 GT:AD:DP:GQ:PL 0/1:23,56:79:99:1440,0,402 7 29394220 rs66659316 CTT C 638.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.851;QD=13.04;ReadPosRankSum=0.174;SOR=0.297 GT:AD:DP:GQ:PL 0/1:24,25:60:99:676,0,793 7 29605935 rs2302617 G A 2108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.864;SOR=0.577 GT:AD:DP:GQ:PL 0/1:73,91:164:99:2137,0,1721 7 29605975 rs2302618 C G 4742.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4771,467,0 7 29606288 rs10271996 C T 2991.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.54;SOR=0.572 GT:AD:DP:GQ:PL 0/1:132,131:263:99:3020,0,3098 7 29966141 rs17324153 T C 2407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.233;SOR=0.549 GT:AD:DP:GQ:PL 0/1:113,110:223:99:2436,0,2581 7 30185773 . C T 1893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.989;ClippingRankSum=0;DP=169;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=1.716;SOR=0.483 GT:AD:DP:GQ:PL 0/1:88,81:169:99:1922,0,1940 7 30485741 rs2907749 A G 1366.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.79;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1395,157,0 7 30634661 rs1049402 C G 7324.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7353,712,0 7 30655542 rs11553502 T C 1957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.968;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.045;SOR=0.763 GT:AD:DP:GQ:PL 0/1:80,83:163:99:1986,0,1826 7 30662087 rs75855065 T C 1195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.78;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=6.308;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.589;SOR=1.292 GT:AD:DP:GQ:PL 0/1:56,49:105:99:1224,0,1408 7 30671087 rs14270 T C 644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.77;ReadPosRankSum=-0.141;SOR=0.741 GT:AD:DP:GQ:PL 0/1:51,32:83:99:673,0,1235 7 30673345 rs2240401 C T 999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.275;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=0.723;SOR=0.733 GT:AD:DP:GQ:PL 0/1:56,45:101:99:1028,0,1331 7 30673401 rs4593 A G 1605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.08;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=-0.064;SOR=0.885 GT:AD:DP:GQ:PL 0/1:48,66:114:99:1634,0,1078 7 30791848 rs4723010 G A 1708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.71;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=4.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.581;SOR=1.055 GT:AD:DP:GQ:PL 0/1:96,80:176:99:1737,0,2503 7 30795288 rs2302339 A G 3198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.342;SOR=0.67 GT:AD:DP:GQ:PL 0/1:144,138:282:99:3227,0,3408 7 30795331 rs2302340 A G 3068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-0.161;SOR=0.824 GT:AD:DP:GQ:PL 0/1:126,121:247:99:3097,0,3273 7 30795436 rs4720015 T G 6903.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6932,663,0 7 30831082 rs12701034 C T 6961.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6990,657,0 7 30915263 rs10216063 A G 1761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.996;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.873;SOR=0.471 GT:AD:DP:GQ:PL 0/1:67,77:144:99:1790,0,1497 7 31592733 rs7811042 C A 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.05;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=-1.371;SOR=0.699 GT:AD:DP:GQ:PL 0/1:117,91:208:99:2054,0,2946 7 31594508 rs2286711 C T 766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.022;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-1.112;SOR=0.541 GT:AD:DP:GQ:PL 0/1:43,33:76:99:795,0,993 7 31617733 rs6945679 T C 5212.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5241,528,0 7 31618008 rs10252720 A G 4592.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4621,447,0 7 31682453 rs4141001 C T 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=7.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=0.189;SOR=1.198 GT:AD:DP:GQ:PL 0/1:105,74:179:99:1740,0,2701 7 31682601 rs38396 T C 2818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.779;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-1.279;SOR=0.718 GT:AD:DP:GQ:PL 0/1:128,113:241:99:2847,0,3224 7 31682853 rs38397 T C 1969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.298;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=4.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.432;SOR=1.005 GT:AD:DP:GQ:PL 0/1:81,75:156:99:1998,0,2060 7 31683410 rs10247620 G A 2596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.488;SOR=0.711 GT:AD:DP:GQ:PL 0/1:107,114:221:99:2625,0,2632 7 31855578 rs1860790 G A 4775.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.267 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4804,477,0 7 32209425 rs977625 A G 3779.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3808,373,0 7 32209459 rs977626 C T 1430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-0.114;SOR=0.698 GT:AD:DP:GQ:PL 0/1:92,65:157:99:1459,0,2263 7 32338337 rs215607 G A 7505.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=1.069 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7534,759,0 7 32529936 rs1584614 G C 4906.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.579 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4935,465,0 7 32598524 rs1466144 G A 2572.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.788 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2601,246,0 7 32613020 rs1993050 A G 5496.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5525,535,0 7 32615553 rs6462381 C T 435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=0.552;SOR=0.666 GT:AD:DP:GQ:PL 0/1:28,23:51:99:464,0,730 7 32909182 rs752730 G A 2197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.196;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.396;SOR=0.59 GT:AD:DP:GQ:PL 0/1:90,91:181:99:2226,0,2171 7 33003171 rs3110942 G A 402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.925;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.5;MQ=54.88;MQRankSum=-3.847;QD=14.92;ReadPosRankSum=-0.324;SOR=1.449 GT:AD:DP:GQ:PL 0/1:12,15:27:99:431,0,273 7 33016120 rs3750116 G T 2126.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.29;QD=30.82;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2155,207,0 7 33060946 rs3750117 A G 1448.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1477,140,0 7 33102227 rs72555707 A G 2159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.727;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=8.794;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-0.173;QD=11.87;ReadPosRankSum=-1.139;SOR=1.261 GT:AD:DP:GQ:PL 0/1:98,84:182:99:2188,0,2388 7 33136983 rs6462460 G A 2688.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2717,284,0 7 33380598 rs11981364 G T 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.02;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.065;SOR=0.471 GT:AD:DP:GQ:PL 0/1:41,52:93:99:1148,0,1060 7 34009946 rs10265207 C T 1082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=2.096;SOR=0.543 GT:AD:DP:GQ:PL 0/1:69,51:120:99:1111,0,1788 7 34192762 rs6968741 G C 5384.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5413,545,0 7 34889182 rs6972158 A G 3367.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3396,324,0 7 34889222 rs10275028 T C 4106.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4135,387,0 7 34917740 rs7809642 C T 2163.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.41;QD=27.74;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2192,234,0 7 35288276 rs17675148 T C 4309.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.373 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4338,425,0 7 35293193 rs336283 A G 7006.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7035,702,0 7 35840898 rs59008252 G GC 5766.73 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=40.05;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,144:146:99:5804,439,0 7 35930260 rs28522781 G T 638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.512;SOR=0.904 GT:AD:DP:GQ:PL 0/1:38,29:67:99:667,0,1008 7 36320821 rs196586 G A 4602.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.4;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4631,502,0 7 36338749 rs196613 T C 8522.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8551,867,0 7 36374799 rs3779230 G A 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.977;SOR=0.734 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1095,0,910 7 36406337 rs186210664 G A 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=1.766;SOR=0.598 GT:AD:DP:GQ:PL 0/1:58,39:97:99:1012,0,1644 7 36445855 rs61737563 A C 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.154;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-0.382;SOR=0.599 GT:AD:DP:GQ:PL 0/1:82,87:169:99:2235,0,1969 7 36445856 rs197367 G A 6282.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.18;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,169:169:99:6311,507,0 7 36447349 rs374349756 A ACTT 2807.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.03;SOR=1.85 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2845,193,0 7 36465606 rs375398580 CT C 341.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.597;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=2.583;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0.921;QD=8.33;ReadPosRankSum=-1.363;SOR=1.22 GT:AD:DP:GQ:PL 0/1:20,21:46:99:379,0,379 7 36466655 rs3815484 C A 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.81;ReadPosRankSum=-0.937;SOR=0.937 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,40:82:99:0|1:36466655_C_A:1325,0,1783 7 36552656 rs7986 G A 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.912;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=7.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.689;SOR=1.217 GT:AD:DP:GQ:PL 0/1:85,72:157:99:1770,0,1908 7 36552729 rs59476355 A AT 6811.73 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6849,632,0 7 36552790 rs57543920 G GT 7139.73 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=34.33;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,208:208:99:7177,626,0 7 36656035 rs3735386 G C 1114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.094;SOR=0.766 GT:AD:DP:GQ:PL 0/1:60,48:108:99:1143,0,1498 7 36763688 rs2228411 C T 5708.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5737,582,0 7 36934448 rs6462722 A G 4673.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4702,450,0 7 37890267 rs2722372 G A 2838.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2867,303,0 7 37890316 rs2598044 C T 2481.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2510,270,0 7 37907304 rs10250905 T C 748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.193;SOR=0.287 GT:AD:DP:GQ:PL 0/1:36,34:70:99:777,0,919 7 37924737 rs1530822 T G 393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=4.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=0.417;SOR=0.223 GT:AD:DP:GQ:PL 0/1:28,18:46:99:422,0,703 7 37934146 rs56128139 T C 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.797;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=2.453;SOR=0.724 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,28:69:99:0|1:37934146_T_C:1041,0,1567 7 37934147 rs41276027 A T 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.34;ReadPosRankSum=2.195;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,28:66:99:0|1:37934146_T_C:1041,0,1567 7 37947103 rs1802074 C T 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.07;ReadPosRankSum=1.087;SOR=0.512 GT:AD:DP:GQ:PL 0/1:83,47:130:99:947,0,2221 7 37947164 rs1802073 G T 911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.66;ReadPosRankSum=0.119;SOR=0.751 GT:AD:DP:GQ:PL 0/1:90,47:137:99:940,0,2385 7 37951726 rs1132553 G A 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.301;SOR=0.653 GT:AD:DP:GQ:PL 0/1:50,56:106:99:1332,0,1233 7 37953840 rs1132552 C T 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=1.256;SOR=0.705 GT:AD:DP:GQ:PL 0/1:49,47:96:99:1148,0,1294 7 37960955 rs4723716 T G 7275.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7304,690,0 7 37988589 rs2044831 C T 2005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=0.013;SOR=0.655 GT:AD:DP:GQ:PL 0/1:87,94:181:99:2034,0,1943 7 38268395 rs7795499 C T 734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.9;ReadPosRankSum=-1.042;SOR=0.484 GT:AD:DP:GQ:PL 0/1:55,38:93:99:763,0,1399 7 38305043 rs1053760 T C 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.946;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=11.799;MLEAC=1;MLEAF=0.5;MQ=52.49;MQRankSum=-8.082;QD=7.69;ReadPosRankSum=-0.859;SOR=1.784 GT:AD:DP:GQ:PL 0/1:80,36:116:99:920,0,2087 7 38305142 rs113809137 G C 2003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.724;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.73;MQRankSum=1.152;QD=12.22;ReadPosRankSum=-2.445;SOR=0.693 GT:AD:DP:GQ:PL 0/1:82,82:164:99:2032,0,1827 7 38356943 rs34482025 G GA 1315.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.033;QD=10.96;ReadPosRankSum=0.996;SOR=0.845 GT:AD:DP:GQ:PL 0/1:61,59:120:99:1353,0,1260 7 38357075 rs11769443 T C 1759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.589;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1;QD=12.22;ReadPosRankSum=0.509;SOR=0.929 GT:AD:DP:GQ:PL 0/1:71,73:144:99:1788,0,1713 7 38431511 rs2229922 C T 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.861;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.762;QD=8.45;ReadPosRankSum=1.832;SOR=0.919 GT:AD:DP:GQ:PL 0/1:150,89:239:99:2048,0,3658 7 38796570 rs2240350 G A 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=2.635;SOR=0.903 GT:AD:DP:GQ:PL 0/1:45,38:83:99:925,0,1195 7 38813711 rs976350 C T 2800.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2829,267,0 7 39379287 . CCAG C 759.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0;DP=380;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.56;ReadPosRankSum=0.362;SOR=0.743 GT:AD:DP:GQ:PL 0/1:259,38:299:99:797,0,10339 7 39472669 rs2302125 C T 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.95;ReadPosRankSum=-2.768;SOR=1.038 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,63:125:99:0|1:39472669_C_T:2522,0,4055 7 39472681 rs2302124 C T 2709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.15;ReadPosRankSum=0.527;SOR=0.771 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,71:158:99:0|1:39472669_C_T:2738,0,5549 7 39472708 rs2302123 A G 3407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.34;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.85;ReadPosRankSum=-1.067;SOR=0.645 GT:AD:DP:GQ:PGT:PID:PL 0/1:113,102:215:99:0|1:39472669_C_T:3436,0,6120 7 39472846 rs2302122 G A 3327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-0.26;SOR=0.634 GT:AD:DP:GQ:PL 0/1:152,145:297:99:3356,0,3698 7 40127710 rs66537025 CT C 744.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=61.14;MQRankSum=2.069;QD=12.01;ReadPosRankSum=-1.283;SOR=1.029 GT:AD:DP:GQ:PL 0/1:23,39:65:99:782,0,424 7 40314243 rs4637704 A G 1131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.222;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.306;SOR=0.489 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1160,0,1241 7 40899967 rs2010706 G C 2645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.029;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=1.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=0.432;SOR=0.582 GT:AD:DP:GQ:PL 0/1:163,129:292:99:2674,0,3660 7 42005678 rs929387 G A 2754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=0.24;SOR=0.717 GT:AD:DP:GQ:PL 0/1:91,111:202:99:2783,0,2303 7 42063218 . A T 32.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0;DP=101;ExcessHet=3.0103;FS=97.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.36;ReadPosRankSum=1.815;SOR=6.735 GT:AD:DP:GQ:PL 0/1:63,28:91:61:61,0,1090 7 42064852 rs846273 C G 2398.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.98;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2427,225,0 7 42065984 rs372501575 G A 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.09;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.215;SOR=0.956 GT:AD:DP:GQ:PL 0/1:66,61:127:99:1432,0,1504 7 42088222 rs846266 T C 3097.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3126,309,0 7 42951515 rs647117 G A 7830.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7859,760,0 7 42977091 rs631132 G A 5121.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5150,518,0 7 42977195 rs631561 G A 3492.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.81;QD=30.64;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3521,342,0 7 43484310 rs73098706 T C 2565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.744;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.54;SOR=0.572 GT:AD:DP:GQ:PL 0/1:88,99:187:99:2594,0,2163 7 43495878 rs3214631 C CT 1328.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.667;SOR=0.67 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1366,0,1219 7 43506059 rs2304329 A G 1423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.967;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=-0.534;SOR=0.799 GT:AD:DP:GQ:PL 0/1:98,63:161:99:1452,0,2442 7 43506158 rs2304328 T C 2316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.676;SOR=0.647 GT:AD:DP:GQ:PL 0/1:112,105:217:99:2345,0,2716 7 43659182 rs6950861 G A 1255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=1.154;SOR=0.584 GT:AD:DP:GQ:PL 0/1:63,56:119:99:1284,0,1672 7 43664280 rs1044141 A G 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.333;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.094;SOR=0.631 GT:AD:DP:GQ:PL 0/1:86,66:152:99:1607,0,2067 7 43810764 rs699512 G A 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.747;SOR=0.721 GT:AD:DP:GQ:PL 0/1:57,51:108:99:1214,0,1464 7 43830888 rs1802846 T C 2234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.517;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.14;ReadPosRankSum=-0.487;SOR=0.794 GT:AD:DP:GQ:PL 0/1:68,90:158:99:2263,0,1448 7 43843423 rs1131372 G A 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=2.696;SOR=0.622 GT:AD:DP:GQ:PL 0/1:99,81:180:99:1862,0,2506 7 43916727 rs2232108 T G 2763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.353;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.059;SOR=0.81 GT:AD:DP:GQ:PL 0/1:152,111:263:99:2792,0,3779 7 43917013 rs2232105 G A 3831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=4.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.789;SOR=0.661 GT:AD:DP:GQ:PL 0/1:179,166:345:99:3860,0,4401 7 43917274 rs2232103 A G 3363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.818;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.674;SOR=0.591 GT:AD:DP:GQ:PL 0/1:155,131:286:99:3392,0,3703 7 44043438 . C T 40.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.746;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=6.133;MLEAC=1;MLEAF=0.5;MQ=29.1;MQRankSum=-3.749;QD=0.75;ReadPosRankSum=-0.453;SOR=0.156 GT:AD:DP:GQ:PL 0/1:45,9:54:69:69,0,1328 7 44047381 rs6973290 G A 3173.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=9.262;MLEAC=1;MLEAF=0.5;MQ=33.12;MQRankSum=1.381;QD=11.06;ReadPosRankSum=-0.094;SOR=1.074 GT:AD:DP:GQ:PL 0/1:168,119:287:99:3202,0,4673 7 44099664 rs11552797 T C 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.77;SOR=0.555 GT:AD:DP:GQ:PL 0/1:69,70:139:99:1741,0,1670 7 44112694 rs7779139 C T 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=1.421;SOR=0.753 GT:AD:DP:GQ:PL 0/1:70,52:122:99:1263,0,1938 7 44112873 rs3218660 G T 1465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.24;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.37;SOR=0.534 GT:AD:DP:GQ:PL 0/1:87,67:154:99:1494,0,2307 7 44121936 rs3218655 C A 1918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.86;SOR=0.814 GT:AD:DP:GQ:PL 0/1:81,84:165:99:1947,0,2083 7 44148553 rs2595701 A G 2498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-1.944;SOR=0.629 GT:AD:DP:GQ:PL 0/1:116,114:230:99:2527,0,2627 7 44152524 rs144604735 A AG 2506.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.047;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.707;QD=10.07;ReadPosRankSum=-1.293;SOR=0.646 GT:AD:DP:GQ:PL 0/1:147,102:249:99:2544,0,4049 7 44153780 rs13928 A G 5866.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.179;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.04;ReadPosRankSum=0.207;SOR=0.778 GT:AD:DP:GQ:PL 1/1:10,192:202:99:5895,155,0 7 44178626 rs1008384 A G 1208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.736;SOR=0.481 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1237,0,1241 7 44185088 rs2908274 G A 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.73;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-1.154;SOR=0.716 GT:AD:DP:GQ:PL 0/1:103,97:200:99:2296,0,2596 7 44282868 rs11542228 A G 2878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.03;ReadPosRankSum=1.027;SOR=0.608 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,73:125:99:0|1:44282868_A_G:2907,0,2727 7 44282877 rs11542227 A G 2957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.91;ReadPosRankSum=2.094;SOR=0.466 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,77:135:99:0|1:44282868_A_G:2986,0,2894 7 44558268 . CA C 59.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.934;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1;ReadPosRankSum=-0.766;SOR=1.609 GT:AD:DP:GQ:PL 0/1:48,12:67:97:97,0,1060 7 44606098 rs6656 C T 1595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.386;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.624;SOR=0.666 GT:AD:DP:GQ:PL 0/1:71,66:137:99:1624,0,1635 7 44610490 rs217376 C T 2249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.277;SOR=0.73 GT:AD:DP:GQ:PL 0/1:86,102:188:99:2278,0,1971 7 44611077 rs217375 T C 1425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.141;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.023;SOR=0.431 GT:AD:DP:GQ:PL 0/1:83,59:142:99:1454,0,2105 7 44612347 rs217374 G C 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=3.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-0.556;SOR=0.452 GT:AD:DP:GQ:PL 0/1:76,80:156:99:2111,0,2108 7 44620836 rs8580 C A 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.99;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.179;SOR=0.762 GT:AD:DP:GQ:PL 0/1:64,68:132:99:1839,0,1543 7 44800176 rs3735478 G T 2986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.664;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=0.343;SOR=0.734 GT:AD:DP:GQ:PL 0/1:100,116:216:99:3015,0,2831 7 44924627 rs6966024 A C 9609.77 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9638,924,0 7 45004063 rs7792760 T C 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.27;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3573,388,0 7 45009325 rs3735484 G A 6264.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6293,648,0 7 45009341 rs3735485 A G 6493.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6522,689,0 7 45009723 rs11555636 G A 2371.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.78;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2400,268,0 7 45197433 rs67477213 G A 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.778;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=0.245;SOR=0.816 GT:AD:DP:GQ:PL 0/1:59,75:134:99:1920,0,1677 7 45223018 rs11982639 C G 2299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.489;SOR=0.628 GT:AD:DP:GQ:PL 0/1:112,95:207:99:2328,0,2696 7 45747933 rs2280497 A G 2325.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2354,249,0 7 45753324 rs2293106 G A 3572.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3601,383,0 7 45932669 rs4619 A G 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.512;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=-1.577;SOR=0.818 GT:AD:DP:GQ:PL 0/1:26,33:59:99:918,0,706 7 45960645 rs2854746 G C 8274.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8303,872,0 7 47323456 rs3750164 A G 5219.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5248,507,0 7 47408029 rs2255744 A G 3629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.24;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-1.156;SOR=0.792 GT:AD:DP:GQ:PL 0/1:126,142:268:99:3658,0,3081 7 47408974 rs1534136 T A 2528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-1.85;SOR=0.65 GT:AD:DP:GQ:PL 0/1:115,104:219:99:2557,0,2822 7 47840387 rs13231277 C T 2281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.173;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.744;SOR=0.672 GT:AD:DP:GQ:PL 0/1:134,104:238:99:2310,0,3188 7 47851654 rs73103467 A G 1373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-1.074;SOR=0.604 GT:AD:DP:GQ:PL 0/1:72,57:129:99:1402,0,1815 7 47869038 rs7788583 T C 2178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=2.817;SOR=0.605 GT:AD:DP:GQ:PL 0/1:97,90:187:99:2207,0,2412 7 47872845 rs921634 A G 5292.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5321,540,0 7 47874630 rs66755489 G A 1981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.531;SOR=0.458 GT:AD:DP:GQ:PL 0/1:74,84:158:99:2010,0,1773 7 47913579 rs1470859 T C 4429.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.52;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,115:115:99:4458,346,0 7 47913580 rs73105162 G A 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=-0.561;SOR=0.623 GT:AD:DP:GQ:PL 0/1:45,69:114:99:1610,0,966 7 47913615 rs17131867 G A 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.517;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-1.591;SOR=0.84 GT:AD:DP:GQ:PL 0/1:35,45:80:99:1103,0,714 7 47915677 rs4724655 A G 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.248;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=4.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-1.076;SOR=1.108 GT:AD:DP:GQ:PL 0/1:76,53:129:99:1328,0,1820 7 47920345 rs62447081 G A 1291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=0.788;SOR=0.752 GT:AD:DP:GQ:PL 0/1:46,57:103:99:1320,0,1039 7 47921682 rs10951936 A T 1491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-2.116;SOR=0.901 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1520,0,1609 7 47925331 rs10274334 C G 2825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.671;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.586;SOR=0.723 GT:AD:DP:GQ:PL 0/1:153,120:273:99:2854,0,3695 7 47947863 rs1474283 T C 1359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.655;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=7.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-2.121;SOR=1.334 GT:AD:DP:GQ:PL 0/1:74,56:130:99:1388,0,1746 7 47968927 rs2686817 C A 2396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=5.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=1.114;SOR=1.016 GT:AD:DP:GQ:PL 0/1:127,106:233:99:2425,0,3321 7 47971575 rs885337 A G 2083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.649;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.445;SOR=0.69 GT:AD:DP:GQ:PL 0/1:80,86:166:99:2112,0,1863 7 47979922 rs2708913 A G 608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.922;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=10.036;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.74;ReadPosRankSum=1.613;SOR=1.684 GT:AD:DP:GQ:PL 0/1:65,41:106:99:637,0,1649 7 48004962 rs1056663 C T 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-1.383;SOR=0.673 GT:AD:DP:GQ:PL 0/1:50,58:108:99:1253,0,1134 7 48081095 rs10951942 G T 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.529;SOR=0.889 GT:AD:DP:GQ:PL 0/1:100,76:176:99:1869,0,2549 7 48086077 rs2708912 C T 4358.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4387,438,0 7 48086161 rs10233232 T C 5373.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5402,542,0 7 48089542 rs2686788 T C 2933.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2962,314,0 7 48089571 rs2708890 C A 2528.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.62;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2557,283,0 7 48092486 rs2686791 T C 4646.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.625 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4675,447,0 7 48146690 rs74767755 G A 1751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=0.688;SOR=0.75 GT:AD:DP:GQ:PL 0/1:61,71:132:99:1780,0,1534 7 48285485 rs1880738 C T 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.887;SOR=0.614 GT:AD:DP:GQ:PL 0/1:91,89:180:99:2038,0,2202 7 48312674 rs1358066 G A 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.505;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-0.508;SOR=0.614 GT:AD:DP:GQ:PL 0/1:112,85:197:99:1941,0,3050 7 48313510 rs17547830 A G 1437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.337;SOR=0.558 GT:AD:DP:GQ:PL 0/1:66,61:127:99:1466,0,1707 7 48314798 rs13233225 G T 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.027;SOR=0.768 GT:AD:DP:GQ:PL 0/1:113,90:203:99:2195,0,2800 7 48315796 rs1880736 C A 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.865;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=4.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.018;SOR=0.656 GT:AD:DP:GQ:PL 0/1:68,60:128:99:1487,0,1979 7 48317683 rs10246853 A T 311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.192;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-2.981;SOR=1.244 GT:AD:DP:GQ:PL 0/1:22,14:36:99:340,0,574 7 48318811 rs2222648 C T 2695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=6.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.584;SOR=1.106 GT:AD:DP:GQ:PL 0/1:90,107:197:99:2724,0,2136 7 48336844 rs6583546 C T 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=0.653;SOR=0.761 GT:AD:DP:GQ:PL 0/1:81,56:137:99:1175,0,1923 7 48412112 rs11357239 TA T 148.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=1.461;QD=4.02;ReadPosRankSum=-0.637;SOR=0.693 GT:AD:DP:GQ:PL 0/1:23,14:46:99:186,0,476 7 48450097 rs62447267 C T 1500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.2;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.587;SOR=0.687 GT:AD:DP:GQ:PL 0/1:60,63:123:99:1529,0,1722 7 48450157 rs17548783 T C 2670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=1.316;SOR=0.693 GT:AD:DP:GQ:PL 0/1:133,124:257:99:2699,0,3016 7 48450289 rs62447268 C G 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.107;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=2.284;SOR=0.706 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1879,0,2148 7 48451939 rs1865195 T C 757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.653;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.954;SOR=0.39 GT:AD:DP:GQ:PL 0/1:26,28:54:99:786,0,644 7 48452200 rs7789493 G A 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.9;SOR=0.52 GT:AD:DP:GQ:PL 0/1:54,58:112:99:1372,0,1374 7 48467355 rs13233421 T C 368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.944;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=-0.428;SOR=0.793 GT:AD:DP:GQ:PL 0/1:25,17:42:99:397,0,605 7 48528923 rs73694648 G C 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.371;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.152;SOR=0.567 GT:AD:DP:GQ:PL 0/1:42,41:83:99:935,0,1189 7 48545976 rs6583448 A G 3523.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3552,357,0 7 50023122 rs988392 C T 418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-0.247;SOR=0.846 GT:AD:DP:GQ:PL 0/1:22,17:39:99:447,0,639 7 50070921 rs1351691 C G 549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-0.652;SOR=1.089 GT:AD:DP:GQ:PL 0/1:29,27:56:99:578,0,733 7 50173777 rs998928 A G 1540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.156;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=1.582;SOR=0.632 GT:AD:DP:GQ:PL 0/1:46,62:108:99:1569,0,982 7 50175681 rs12672941 C T 435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=0.607;SOR=0.518 GT:AD:DP:GQ:PL 0/1:25,22:47:99:464,0,673 7 50180972 rs1456908 C T 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.851;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.318;SOR=1.008 GT:AD:DP:GQ:PL 0/1:47,53:100:99:1298,0,1062 7 50198626 rs4917120 T C 3977.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4006,365,0 7 50514577 rs10235371 C T 1996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.707;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.221;SOR=0.564 GT:AD:DP:GQ:PL 0/1:99,84:183:99:2025,0,2755 7 50595900 rs6263 T C 1408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=-0.487;SOR=0.71 GT:AD:DP:GQ:PL 0/1:92,66:158:99:1437,0,2158 7 50597056 rs6950777 G A 1218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-0.387;SOR=0.607 GT:AD:DP:GQ:PL 0/1:65,56:121:99:1247,0,1622 7 50611735 rs6264 T C 4185.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.849;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.87;ReadPosRankSum=-0.85;SOR=1.139 GT:AD:DP:GQ:PL 1/1:2,143:145:99:4214,399,0 7 50673029 rs4947710 T C 3802.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3831,416,0 7 50742118 rs2715128 A G 3665.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.278 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3694,354,0 7 50742180 rs1800504 C T 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.605;SOR=0.878 GT:AD:DP:GQ:PL 0/1:100,80:180:99:1953,0,2673 7 51093013 rs2240087 A T 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.37;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.915;QD=10.69;ReadPosRankSum=-0.06;SOR=0.679 GT:AD:DP:GQ:PL 0/1:98,84:182:99:1973,0,2338 7 51096147 rs61739182 A G 3734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.231;SOR=0.786 GT:AD:DP:GQ:PL 0/1:142,149:291:99:3763,0,3438 7 51096852 rs138522978 C T 3018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-1.521;SOR=0.539 GT:AD:DP:GQ:PL 0/1:129,130:259:99:3047,0,3330 7 51096974 rs2240090 C T 2590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.776;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.934;SOR=0.813 GT:AD:DP:GQ:PL 0/1:108,104:212:99:2619,0,2663 7 51097063 rs10230120 T G 2419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.743;SOR=0.714 GT:AD:DP:GQ:PL 0/1:105,102:207:99:2448,0,2513 7 51098567 rs142060269 GTCT G 1223.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.601;QD=16.1;ReadPosRankSum=1.359;SOR=0.662 GT:AD:DP:GQ:PL 0/1:42,34:76:99:1261,0,1925 7 51287470 rs801142 A G 6801.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6830,698,0 7 53103554 rs11238247 C G 8867.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.05;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8896,760,0 7 53103571 rs11238248 G A 7925.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7954,739,0 7 53103860 . G C 3107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DP=317;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=1.323;SOR=0.892 GT:AD:DP:GQ:PL 0/1:187,128:315:99:3136,0,5037 7 53103946 rs12113170 G C 8900.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.34;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8929,801,0 7 54614698 rs11432820 C CG 5933.73 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=32.42;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5971,551,0 7 55214348 rs2072454 C T 2017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.757;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=2.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-0.961;SOR=0.845 GT:AD:DP:GQ:PL 0/1:121,89:210:99:2046,0,2920 7 55214443 rs7801956 G A 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=1.184;SOR=0.748 GT:AD:DP:GQ:PL 0/1:110,96:206:99:2320,0,2702 7 55238087 rs10258429 C T 3364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=-1.382;SOR=0.675 GT:AD:DP:GQ:PL 0/1:105,132:237:99:3393,0,2682 7 55241755 rs17337107 G A 1861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=4.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.015;SOR=0.453 GT:AD:DP:GQ:PL 0/1:90,81:171:99:1890,0,2232 7 55249063 rs1050171 G A 6898.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6927,714,0 7 55266417 rs1140475 T C 5312.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5341,530,0 7 55433880 rs2272262 G C 4109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.853;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.25;ReadPosRankSum=-1.52;SOR=0.664 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,105:203:99:0|1:55433880_G_C:4138,0,4461 7 55433884 rs2272263 A C 4075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.84;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.48;ReadPosRankSum=-2.244;SOR=0.58 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,105:199:99:0|1:55433880_G_C:4104,0,4486 7 55459563 rs2049497 A G 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.486;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=9.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.105;SOR=0.985 GT:AD:DP:GQ:PL 0/1:49,47:96:99:1108,0,1126 7 55540707 rs815957 G A 2408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.423;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.5;MQ=54.62;MQRankSum=1.213;QD=10.52;ReadPosRankSum=1.085;SOR=0.884 GT:AD:DP:GQ:PL 0/1:128,101:229:99:2437,0,3147 7 55991292 rs2174460 G A 2523.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.57;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2552,219,0 7 55991293 rs2174459 T C 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.441;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=6.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.596;SOR=1.46 GT:AD:DP:GQ:PL 0/1:41,32:73:99:824,0,953 7 56007576 rs34016595 C T 2225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=0.104;SOR=0.712 GT:AD:DP:GQ:PL 0/1:72,89:161:99:2254,0,1809 7 56049990 rs66485869 A G 318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.359;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=5.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.594;SOR=1.802 GT:AD:DP:GQ:PL 0/1:17,12:29:99:347,0,410 7 56122058 rs6593297 A T 936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.61;MQRankSum=-4.969;QD=10.77;ReadPosRankSum=1.147;SOR=0.619 GT:AD:DP:GQ:PL 0/1:46,41:87:99:965,0,1128 7 56126360 rs2230197 T C 345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=5.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.76;ReadPosRankSum=0.398;SOR=1.536 GT:AD:DP:GQ:PL 0/1:41,19:60:99:374,0,1106 7 56136260 rs4245575 C A 5046.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5075,538,0 7 56149847 rs17172508 C T 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.462;SOR=0.927 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1107,0,1478 7 56174115 rs10043 A C 3017.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.431 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3046,303,0 7 57188016 rs78588121 A G 3703.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.055;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.5;MQ=53.96;MQRankSum=-12.803;QD=12.68;ReadPosRankSum=-0.913;SOR=0.812 GT:AD:DP:GQ:PL 0/1:149,143:292:99:3732,0,3950 7 57188526 rs62464801 T C 1583.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.63;MQRankSum=-2.132;QD=10.77;ReadPosRankSum=1.89;SOR=0.742 GT:AD:DP:GQ:PL 0/1:80,67:147:99:1612,0,1946 7 57188718 rs62464802 T C 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.831;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=0.879;QD=13.22;ReadPosRankSum=0.573;SOR=0.55 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1628,0,1314 7 57528997 rs10272498 T C 4959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.18;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.305;SOR=0.758 GT:AD:DP:GQ:PL 0/1:206,194:400:99:4988,0,5137 7 57529392 rs13235676 A C 3878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.949;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0.873;QD=10.74;ReadPosRankSum=-1.989;SOR=0.766 GT:AD:DP:GQ:PL 0/1:206,155:361:99:3907,0,5361 7 63529956 rs4349869 G A 5020.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5049,530,0 7 63537638 rs34875861 CT C 1902.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=7.357;MLEAC=2;MLEAF=1;MQ=60.43;MQRankSum=0.55;QD=20.91;ReadPosRankSum=1.577;SOR=0.109 GT:AD:DP:GQ:PL 1/1:6,85:95:99:1940,123,0 7 63537849 rs4717170 G A 7005.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,221:221:99:7034,663,0 7 63538544 rs199542879 T C 3749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.843;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.973;QD=12.75;ReadPosRankSum=1.385;SOR=0.673 GT:AD:DP:GQ:PL 0/1:152,142:294:99:3778,0,3935 7 63673481 rs117854459 A G 2243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=1.655;SOR=0.741 GT:AD:DP:GQ:PL 0/1:115,109:224:99:2272,0,2631 7 63673603 rs113133873 T G 1752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.563;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.097;SOR=0.507 GT:AD:DP:GQ:PL 0/1:72,71:143:99:1781,0,1824 7 63673608 rs10252019 C T 5028.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.53;SOR=1.793 GT:AD:DP:GQ:PL 1/1:0,134:134:99:5057,402,0 7 63679733 rs10270226 A G 6113.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6142,629,0 7 63721251 rs12154540 A G 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=1.897;SOR=0.688 GT:AD:DP:GQ:PL 0/1:126,96:222:99:2029,0,2959 7 63726370 rs17139320 A G 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.802;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.483;SOR=0.752 GT:AD:DP:GQ:PL 0/1:122,76:198:99:1874,0,2955 7 63726797 rs61738469 T C 4034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.758;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=7.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-1.875;SOR=1.068 GT:AD:DP:GQ:PL 0/1:166,155:321:99:4063,0,4168 7 63808867 rs11976837 C A 2567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.883;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-0.942;QD=13.88;ReadPosRankSum=0.536;SOR=0.586 GT:AD:DP:GQ:PL 0/1:88,97:185:99:2596,0,2125 7 63981559 rs17852813 T C 2565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.826;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=10.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-0.669;SOR=1.282 GT:AD:DP:GQ:PL 0/1:128,95:223:99:2594,0,3254 7 63981563 rs10243954 A G 8581.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.67;SOR=1.379 GT:AD:DP:GQ:PL 1/1:0,234:235:99:8610,707,0 7 64004817 rs111920108 AACAC A 5700.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.91;QD=20.43;ReadPosRankSum=-0.66;SOR=0.811 GT:AD:DP:GQ:PL 0/1:137,142:366:99:5738,0,6110 7 64152353 rs4718101 A G 4266.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.171 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4295,419,0 7 64168806 rs4718103 T C 5264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.632;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-1.324;QD=13.6;ReadPosRankSum=0.669;SOR=0.798 GT:AD:DP:GQ:PL 0/1:181,206:387:99:5293,0,4362 7 64169019 rs4717205 G A 4106.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4135,384,0 7 64275284 rs7809431 C T 6513.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.06;ReadPosRankSum=0.59;SOR=0.576 GT:AD:DP:GQ:PL 1/1:8,242:250:99:6542,444,0 7 64291333 rs4483043 T A 4570.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4599,469,0 7 64291976 rs10949946 G A 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=-0.231;SOR=0.93 GT:AD:DP:GQ:PL 0/1:72,88:160:99:2183,0,1767 7 64291991 rs4236203 T A 4653.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4682,465,0 7 64388472 rs62455581 C A 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-0.251;QD=9.9;ReadPosRankSum=-0.745;SOR=0.779 GT:AD:DP:GQ:PL 0/1:81,57:138:99:1394,0,2150 7 64438667 rs1404453 G A 5153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.177;ClippingRankSum=0;DB;DP=420;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=1.389;QD=12.3;ReadPosRankSum=-0.375;SOR=0.808 GT:AD:DP:GQ:PL 0/1:214,205:419:99:5182,0,5141 7 64439613 rs3807068 T G 2047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.397;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.885;SOR=0.877 GT:AD:DP:GQ:PL 0/1:91,80:173:99:2076,0,2403 7 64439701 rs3807069 C T 1771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=8.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-1.176;SOR=0.806 GT:AD:DP:GQ:PL 0/1:76,71:147:99:1800,0,2067 7 65419353 rs113545826 T TTTA 1355.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.192;QD=14.42;ReadPosRankSum=-0.544;SOR=0.571 GT:AD:DP:GQ:PL 0/1:56,38:94:99:1393,0,2235 7 65425894 rs9530 A G 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-2.023;SOR=0.941 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1417,0,1218 7 65426054 . CA C 150.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.444;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.43;ReadPosRankSum=0.928;SOR=0.818 GT:AD:DP:GQ:PL 0/1:48,14:82:99:188,0,1108 7 65599246 rs5884583 CT C 507.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.469;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.35;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.735;QD=11.04;ReadPosRankSum=-1.136;SOR=0.9 GT:AD:DP:GQ:PL 0/1:19,27:58:99:545,0,322 7 66463195 rs145124227 A AT 1611.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60.01;MQRankSum=-0.972;QD=9.89;ReadPosRankSum=0.007;SOR=0.602 GT:AD:DP:GQ:PL 0/1:86,77:175:99:1649,0,1683 7 66463938 rs11547292 G A 1110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.5;MQ=58.22;MQRankSum=-4.845;QD=10.78;ReadPosRankSum=-0.576;SOR=0.61 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1139,0,1478 7 66474559 rs4717339 G C 1282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=59.21;MQRankSum=-0.842;QD=12.33;ReadPosRankSum=1.819;SOR=0.817 GT:AD:DP:GQ:PL 0/1:48,56:104:99:1311,0,1082 7 66582460 rs35171532 T A 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.835;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=4.381;MLEAC=1;MLEAF=0.5;MQ=59.72;MQRankSum=-2.207;QD=6.56;ReadPosRankSum=0.068;SOR=1.136 GT:AD:DP:GQ:PL 0/1:92,57:149:99:1005,0,2246 7 66648157 rs4145350 C T 6460.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.533;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.56;MQRankSum=3.074;QD=29.5;ReadPosRankSum=1.883;SOR=1.022 GT:AD:DP:GQ:PL 1/1:4,215:219:99:6489,557,0 7 66648199 rs55756354 G A 6381.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.253;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.3;MQRankSum=2.046;QD=27.99;ReadPosRankSum=2.138;SOR=0.786 GT:AD:DP:GQ:PL 1/1:4,224:228:99:6410,585,0 7 66660242 rs2949097 A G 2517.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.04;QD=44.96;SOR=1.101 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,56:56:99:1|1:66660242_A_G:2546,172,0 7 66660247 rs55673383 T C 2444.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.07;QD=44.45;SOR=0.97 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,55:55:99:1|1:66660242_A_G:2473,166,0 7 66703328 rs139935023 G A 5474.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.85;QD=32.4;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5503,507,0 7 69583231 . TA T 666.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.04;ClippingRankSum=0;DP=178;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=1.891;QD=6.95;ReadPosRankSum=-1.524;SOR=0.845 GT:AD:DP:GQ:PL 0/1:58,38:142:99:704,0,894 7 70252185 rs2293500 A G 1099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.83;SOR=0.412 GT:AD:DP:GQ:PL 0/1:60,48:108:99:1128,0,1543 7 70885883 rs11455717 C CT 4394.73 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=37.24;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,118:118:99:4432,358,0 7 70886107 rs11455716 G GC 5886.73 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=35.25;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5924,502,0 7 71868228 rs62463250 A C 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.22;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=4.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.507;SOR=1.084 GT:AD:DP:GQ:PL 0/1:71,53:124:99:1330,0,1731 7 72081774 rs3015854 A G 1417.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.507;ClippingRankSum=0;DB;DP=403;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=55.66;MQRankSum=-19.548;QD=3.53;ReadPosRankSum=-3.156;SOR=0.841 GT:AD:DP:GQ:PL 0/1:308,94:402:99:1446,0,7391 7 72081809 rs201876441 T C 313.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.74;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=43.61;MLEAC=1;MLEAF=0.5;MQ=57.32;MQRankSum=-16.868;QD=1.09;ReadPosRankSum=-1.456;SOR=3.982 GT:AD:DP:GQ:PL 0/1:251,36:287:99:342,0,6596 7 72093957 rs28535321 A G 1730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.016;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.5;MQ=52.45;MQRankSum=-10.221;QD=8.97;ReadPosRankSum=-0.846;SOR=0.607 GT:AD:DP:GQ:PL 0/1:120,73:193:99:1759,0,2896 7 72193864 rs3015858 T C 2917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.921;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-2.564;QD=16.12;ReadPosRankSum=1.053;SOR=0.712 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,79:181:99:0|1:72193864_T_C:2946,0,5127 7 72193868 rs2960999 G A 2929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.97;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.611;QD=16.74;ReadPosRankSum=0.861;SOR=0.775 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,76:175:99:0|1:72193864_T_C:2958,0,5030 7 72209527 rs11354897 CA C 3187.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=57.54;MQRankSum=0.67;QD=14.49;ReadPosRankSum=1.701;SOR=0.752 GT:AD:DP:GQ:PL 0/1:116,104:220:99:3225,0,3669 7 72396170 . GCGCCGCGCTCCCCAC G 3792.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DP=280;ExcessHet=3.0103;FS=4.541;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-1.353;QD=19.55;ReadPosRankSum=1.298;SOR=1.78 GT:AD:DP:GQ:PL 0/1:93,101:194:99:3830,0,3496 7 72413037 . G A 751.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.604;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.5;MQ=25.19;MQRankSum=-0.746;QD=7.52;ReadPosRankSum=0.612;SOR=0.181 GT:AD:DP:GQ:PL 0/1:63,37:100:99:780,0,1564 7 72413423 rs71554686 C T 2251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.217;ClippingRankSum=0;DB;DP=696;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=49.91;MQRankSum=0.673;QD=3.24;ReadPosRankSum=-0.082;SOR=0.689 GT:AD:DP:GQ:PL 0/1:554,141:695:99:2280,0,14295 7 72413443 rs62463429 G A 8730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.794;ClippingRankSum=0;DB;DP=774;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.5;MQ=51.85;MQRankSum=1.947;QD=11.31;ReadPosRankSum=-0.312;SOR=0.642 GT:AD:DP:GQ:PL 0/1:393,379:772:99:8759,0,9497 7 72413581 rs71554687 G A 2662.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.38;ClippingRankSum=0;DB;DP=533;ExcessHet=3.0103;FS=21.854;MLEAC=1;MLEAF=0.5;MQ=57;MQRankSum=-20.646;QD=5.01;ReadPosRankSum=-1.037;SOR=2.274 GT:AD:DP:GQ:PGT:PID:PL 0/1:428,104:532:99:0|1:72413581_G_A:2691,0,22004 7 72413593 rs71554688 T C 2239.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.969;ClippingRankSum=0;DB;DP=487;ExcessHet=3.0103;FS=31.26;MLEAC=1;MLEAF=0.5;MQ=57.46;MQRankSum=-19.675;QD=4.6;ReadPosRankSum=-1.417;SOR=3.025 GT:AD:DP:GQ:PGT:PID:PL 0/1:407,80:487:99:0|1:72413581_G_A:2268,0,21458 7 72413874 rs199633193 T C 2200.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=10.111;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=51.37;MQRankSum=-14.58;QD=6.49;ReadPosRankSum=0.01;SOR=0.758 GT:AD:DP:GQ:PL 0/1:245,94:339:99:2229,0,6593 7 72418963 rs7056 T C 3288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=2.504;MLEAC=1;MLEAF=0.5;MQ=58.01;MQRankSum=-6.309;QD=11.07;ReadPosRankSum=1.168;SOR=0.853 GT:AD:DP:GQ:PL 0/1:150,147:297:99:3317,0,3679 7 72436652 rs201028940 A G 1820.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.82;QD=30.35;SOR=6.804 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1849,180,0 7 72717933 rs11544043 C T 2922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.5;MQ=59;MQRankSum=0.288;QD=9.84;ReadPosRankSum=0.616;SOR=0.743 GT:AD:DP:GQ:PL 0/1:164,133:297:99:2951,0,3927 7 72738749 rs28626137 A G 16647.8 PASS AC=2;AF=1;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.9;QD=44.28;SOR=0.967 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,376:376:99:1|1:72738749_A_G:16676,1138,0 7 72738762 rs6980258 C T 16990.8 PASS AC=2;AF=1;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.82;QD=45.67;SOR=0.998 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,372:372:99:1|1:72738749_A_G:17019,1147,0 7 72738763 rs6980124 A G 16925.8 PASS AC=2;AF=1;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.83;QD=45.26;SOR=1.01 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,374:374:99:1|1:72738749_A_G:16954,1141,0 7 72992858 rs76029572 C G 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.387;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=3.672;SOR=0.61 GT:AD:DP:GQ:PL 0/1:78,59:137:99:1572,0,2174 7 73020301 rs799157 T C 7874.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,268:268:99:7903,802,0 7 73097238 rs1569062 G A 3497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=-0.368;SOR=0.678 GT:AD:DP:GQ:PL 0/1:115,139:254:99:3526,0,2829 7 73097654 rs1128349 C T 3760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.653;SOR=0.786 GT:AD:DP:GQ:PL 0/1:164,161:325:99:3789,0,3928 7 73101137 rs11769825 A G 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.594;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=-0.152;SOR=0.92 GT:AD:DP:GQ:PL 0/1:68,82:150:99:2253,0,1692 7 73108310 rs2293487 T C 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.626;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.906;SOR=1.01 GT:AD:DP:GQ:PL 0/1:78,66:144:99:1625,0,1827 7 73122923 rs2228607 A G 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1;SOR=0.612 GT:AD:DP:GQ:PL 0/1:90,88:178:99:1909,0,1819 7 73151644 rs6460052 A G 3850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.425;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=3.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-0.825;SOR=0.914 GT:AD:DP:GQ:PL 0/1:138,158:296:99:3879,0,3247 7 73245519 rs8629 T C 5419.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=1.595 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5448,504,0 7 73249165 rs13246460 T A 8275.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8304,848,0 7 73249299 rs13232463 G C 8374.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8403,856,0 7 73254464 rs73140869 G T 820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.67;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=6.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=1.491;SOR=0.303 GT:AD:DP:GQ:PL 0/1:47,52:99:99:849,0,1000 7 73254812 rs13241921 T C 8312.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8341,831,0 7 73275565 rs11770052 T A 4977.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.878 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5006,471,0 7 73279482 rs13227841 T C 9005.77 PASS AC=2;AF=1;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9034,897,0 7 73279659 rs73142829 G A 3725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.727;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=1.203;SOR=0.695 GT:AD:DP:GQ:PL 0/1:164,153:317:99:3754,0,4071 7 73280020 rs1136647 C T 8075.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8104,811,0 7 73467650 rs150142298 CTGTGTG C,CTG 10929.7 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=42.04;SOR=0.713 GT:AD:DP:GQ:PL 1/2:0,72,188:299:99:10967,5676,5191,2398,0,1632 7 73470782 rs2856728 C T 6232.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6261,617,0 7 73753250 rs539518 T C 9338.77 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,321:321:99:9367,963,0 7 73814749 rs2522943 G C 6653.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6682,684,0 7 73932560 rs17851629 A G 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-1.421;SOR=0.561 GT:AD:DP:GQ:PL 0/1:93,66:159:99:1493,0,2211 7 73944185 rs2240357 T C 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.953;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=4.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.761;SOR=0.661 GT:AD:DP:GQ:PL 0/1:91,85:176:99:2054,0,2154 7 73969541 rs2301895 A G 875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.315;SOR=0.391 GT:AD:DP:GQ:PL 0/1:59,43:102:99:904,0,1529 7 74119475 . AT A 55.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.39;ReadPosRankSum=-0.258;SOR=0.428 GT:AD:DP:GQ:PL 0/1:31,9:46:84:84,0,774 7 74167490 rs373607978 C T 101.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.84;MQRankSum=-0.272;QD=1.82;ReadPosRankSum=0.754;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,9:56:99:0|1:74167490_C_T:130,0,1142 7 74173182 rs2069301 T A 249.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.696;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.77;MQRankSum=-0.4;QD=4.71;ReadPosRankSum=0.079;SOR=0.818 GT:AD:DP:GQ:PL 0/1:38,15:53:99:278,0,857 7 74191707 rs145170670 C T 1380.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.17;QD=28.77;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1409,144,0 7 74193668 rs17295741 G A 5108.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.12;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=6.074;MLEAC=2;MLEAF=1;MQ=47.49;MQRankSum=2.804;QD=28.23;ReadPosRankSum=3.236;SOR=0.066 GT:AD:DP:GQ:PL 1/1:3,178:181:99:5137,453,0 7 74217625 . C T 43.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.94;MQRankSum=0.18;QD=6.25;ReadPosRankSum=0.566;SOR=0.495 GT:AD:DP:GQ:PL 0/1:4,3:7:72:72,0,100 7 74239517 rs201874591 C T 1096.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.924;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.46;MQRankSum=2.619;QD=26.75;ReadPosRankSum=1.84;SOR=1.981 GT:AD:DP:GQ:PL 0/1:6,35:41:55:1125,0,55 7 74489486 rs6955671 T C 8500.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8529,843,0 7 74536756 . G A 372.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=75.851;MLEAC=1;MLEAF=0.5;MQ=32.31;MQRankSum=-5.331;QD=4.72;ReadPosRankSum=-0.595;SOR=6.183 GT:AD:DP:GQ:PL 0/1:58,21:79:99:401,0,1897 7 75028469 rs142958137 A G 59.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.204;ClippingRankSum=-0;DB;DP=7;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=35.4;MQRankSum=-2.189;QD=8.54;ReadPosRankSum=-1.068;SOR=2.494 GT:AD:DP:GQ:PL 0/1:3,4:7:69:88,0,69 7 75051324 rs117499978 G C 4807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=410;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.5;MQ=59.08;MQRankSum=-2.267;QD=11.75;ReadPosRankSum=-0.757;SOR=0.625 GT:AD:DP:GQ:PL 0/1:224,185:409:99:4836,0,5976 7 75051368 rs398003 T C 3579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.465;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=4.568;MLEAC=1;MLEAF=0.5;MQ=56.84;MQRankSum=0.054;QD=11.85;ReadPosRankSum=-0.004;SOR=0.489 GT:AD:DP:GQ:PL 0/1:167,135:302:99:3608,0,6538 7 75051375 rs398016 T C 4228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=5.462;MLEAC=1;MLEAF=0.5;MQ=56.61;MQRankSum=0.066;QD=14.48;ReadPosRankSum=0.148;SOR=0.99 GT:AD:DP:GQ:PL 0/1:129,163:292:99:4257,0,5012 7 75051619 rs199647728 G T 177.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.497;ClippingRankSum=-0;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.32;MQRankSum=-1.097;QD=16.16;ReadPosRankSum=0.473;SOR=0.859 GT:AD:DP:GQ:PL 0/1:5,6:11:99:206,0,172 7 75052068 . C T 393.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.194;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=42.152;MLEAC=1;MLEAF=0.5;MQ=33.01;MQRankSum=-1.917;QD=2.87;ReadPosRankSum=0.743;SOR=5.527 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,19:137:99:0|1:75052068_C_T:422,0,9616 7 75052079 . T A 419.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.685;ClippingRankSum=0;DP=159;ExcessHet=3.0103;FS=44.123;MLEAC=1;MLEAF=0.5;MQ=34.55;MQRankSum=-2.575;QD=2.64;ReadPosRankSum=0.032;SOR=5.668 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,21:159:99:0|1:75052068_C_T:448,0,10436 7 75052102 rs202090574 G A 578.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.338;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=59.665;MLEAC=1;MLEAF=0.5;MQ=34.51;MQRankSum=-1.015;QD=3.15;ReadPosRankSum=-1.91;SOR=6.293 GT:AD:DP:GQ:PGT:PID:PL 0/1:158,26:184:99:0|1:75052068_C_T:607,0,10778 7 75071783 rs62477662 G T 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.606;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=12.679;MLEAC=1;MLEAF=0.5;MQ=46.44;MQRankSum=-0.222;QD=9.18;ReadPosRankSum=1.045;SOR=1.545 GT:AD:DP:GQ:PL 0/1:143,77:220:99:2048,0,4408 7 75071964 rs376646711 T C 3541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0;DB;DP=431;ExcessHet=3.0103;FS=1.89;MLEAC=1;MLEAF=0.5;MQ=56.2;MQRankSum=0.502;QD=8.26;ReadPosRankSum=-0.439;SOR=0.881 GT:AD:DP:GQ:PL 0/1:277,152:429:99:3570,0,7434 7 75123519 rs6947307 G T 6831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.588;ClippingRankSum=0;DB;DP=489;ExcessHet=3.0103;FS=4.27;MLEAC=1;MLEAF=0.5;MQ=55.19;MQRankSum=6.6;QD=14.03;ReadPosRankSum=1.863;SOR=0.465 GT:AD:DP:GQ:PL 0/1:207,280:487:99:6860,0,4999 7 75130916 rs200010058 C A 9609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.645;ClippingRankSum=0;DB;DP=843;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.99;MQRankSum=1.258;QD=11.43;ReadPosRankSum=-0.07;SOR=0.676 GT:AD:DP:GQ:PL 0/1:414,427:841:99:9638,0,10730 7 75131185 rs58940651 C G 3318.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.83;QD=35.31;SOR=2.621 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3347,282,0 7 75131251 rs794362 G A 3522.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=5.13;MLEAC=2;MLEAF=1;MQ=35.83;MQRankSum=1.833;QD=34.88;ReadPosRankSum=-1.201;SOR=1.704 GT:AD:DP:GQ:PL 1/1:1,100:101:99:3551,276,0 7 75183403 rs1167807 A G 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-1.829;SOR=0.873 GT:AD:DP:GQ:PL 0/1:60,85:145:99:1997,0,1247 7 75398998 rs2302009 A C 678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.226;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.82;ReadPosRankSum=0.328;SOR=0.602 GT:AD:DP:GQ:PL 0/1:45,32:77:99:707,0,986 7 75441108 rs11465315 C T 1379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.217;SOR=0.838 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,40:110:99:0|1:75441108_C_T:1408,0,3568 7 75441111 rs11465314 G T 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.233;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-1.594;SOR=0.741 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,40:106:99:0|1:75441108_C_T:1441,0,3565 7 75513062 rs42183 A G 3536.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3565,363,0 7 75609677 rs1135612 A G 2420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.775;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=0.471;SOR=0.456 GT:AD:DP:GQ:PL 0/1:84,101:185:99:2449,0,2156 7 75614082 rs4732516 C G 3930.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.03;SOR=1.753 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3959,357,0 7 75614288 rs2286822 C T 3244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.171;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.303;SOR=0.844 GT:AD:DP:GQ:PGT:PID:PL 0/1:183,153:336:99:0|1:75614288_C_T:3273,0,9415 7 75614296 rs2286823 G A 5834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.218;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=4.189;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0.935;QD=17.21;ReadPosRankSum=0.013;SOR=0.923 GT:AD:DP:GQ:PGT:PID:PL 0/1:182,157:339:99:0|1:75614288_C_T:5863,0,4117 7 75614953 rs2228104 T C 7446.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7475,731,0 7 75615006 rs1057868 C T 4377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=-2.084;SOR=0.6 GT:AD:DP:GQ:PL 0/1:147,178:325:99:4406,0,3669 7 75616577 rs8509 G A 1409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=2.898;SOR=0.582 GT:AD:DP:GQ:PL 0/1:89,62:151:99:1438,0,2312 7 75621827 rs4732519 A G 4590.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4619,438,0 7 75623893 rs114462308 G A 1289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.112;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=0.119;SOR=0.541 GT:AD:DP:GQ:PL 0/1:59,58:117:99:1318,0,1550 7 75630274 rs8565 T C 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.4;ReadPosRankSum=-2.254;SOR=0.495 GT:AD:DP:GQ:PL 0/1:49,88:137:99:2275,0,1131 7 75659815 rs1044483 T C 913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=1.139;SOR=0.604 GT:AD:DP:GQ:PL 0/1:41,41:82:99:942,0,958 7 75677504 rs6720 C T 3337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=5.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=2.188;SOR=0.63 GT:AD:DP:GQ:PL 0/1:131,128:259:99:3366,0,3527 7 75684326 rs79663210 G A 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=6.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.928;SOR=1.139 GT:AD:DP:GQ:PL 0/1:109,89:198:99:2094,0,2932 7 75692927 rs1637037 C T 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.974;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=0.191;SOR=0.481 GT:AD:DP:GQ:PL 0/1:48,52:100:99:1336,0,1112 7 75914934 rs75544239 G GC 3815.73 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.34;SOR=1.396 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3853,328,0 7 76023029 rs10261314 T C 3650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.436;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=0.414;SOR=0.668 GT:AD:DP:GQ:PL 0/1:146,130:276:99:3679,0,3964 7 76023131 rs35508921 A AG 6516.73 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6554,551,0 7 76029695 rs4728712 C T 4076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.085;SOR=0.65 GT:AD:DP:GQ:PL 0/1:178,182:360:99:4105,0,4188 7 76069811 rs2906999 T C 3111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=5.611;MLEAC=1;MLEAF=0.5;MQ=56.84;MQRankSum=-6.693;QD=11.15;ReadPosRankSum=0.48;SOR=1.003 GT:AD:DP:GQ:PL 0/1:151,128:279:99:3140,0,4032 7 76111835 rs4236506 G A 2179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.839;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=2.44;SOR=0.496 GT:AD:DP:GQ:PL 0/1:79,96:175:99:2208,0,2008 7 76112060 rs1638074 C T 4146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.254;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=59.35;MQRankSum=-2.397;QD=11.68;ReadPosRankSum=2.498;SOR=0.742 GT:AD:DP:GQ:PL 0/1:181,174:355:99:4175,0,4796 7 76131645 rs6979487 A G 7958.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.09;MQRankSum=-0.895;QD=36.68;ReadPosRankSum=0.743;SOR=0.627 GT:AD:DP:GQ:PL 1/1:1,216:217:99:7987,617,0 7 76131650 rs6958774 G A 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=6.845;MLEAC=1;MLEAF=0.5;MQ=51.7;MQRankSum=0.472;QD=10.9;ReadPosRankSum=1.546;SOR=1.119 GT:AD:DP:GQ:PL 0/1:122,98:220:99:2426,0,3110 7 76131695 rs4728775 A G 8223.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.02;QD=30.12;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8252,819,0 7 76132898 rs17855260 T C 2410.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.976;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=4.799;MLEAC=1;MLEAF=0.5;MQ=54.75;MQRankSum=-14.254;QD=10.71;ReadPosRankSum=-0.657;SOR=1.036 GT:AD:DP:GQ:PL 0/1:141,84:225:99:2439,0,3460 7 76134673 rs73140090 C G 1061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.62;SOR=0.604 GT:AD:DP:GQ:PL 0/1:50,44:94:99:1090,0,1423 7 76144455 rs1799125 A C 13463.8 PASS AC=2;AF=1;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.69;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,367:367:99:13492,1115,0 7 76144483 rs1636632 A G 4661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.052;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.849;SOR=0.705 GT:AD:DP:GQ:PL 0/1:183,182:365:99:4690,0,4369 7 76144560 rs1799126 T C 10963.8 PASS AC=2;AF=1;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,346:346:99:10992,1038,0 7 76240785 rs71819724 CA C 3764.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.027;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=4.685;MLEAC=1;MLEAF=0.5;MQ=58.13;MQRankSum=-10.123;QD=12.26;ReadPosRankSum=1.371;SOR=0.969 GT:AD:DP:GQ:PL 0/1:190,117:307:99:3802,0,6696 7 76240888 rs1134609 A G 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.527;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=10.693;MLEAC=1;MLEAF=0.5;MQ=55.64;MQRankSum=-11.734;QD=10.51;ReadPosRankSum=-2.349;SOR=0.384 GT:AD:DP:GQ:PL 0/1:149,121:270:99:2866,0,4065 7 76255019 rs56046726 T C 1966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.711;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=4;MLEAC=1;MLEAF=0.5;MQ=57.18;MQRankSum=-6.319;QD=12.53;ReadPosRankSum=0.551;SOR=1.077 GT:AD:DP:GQ:PL 0/1:83,74:157:99:1995,0,2046 7 76870998 rs17230010 T C 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.9;ReadPosRankSum=-1.526;SOR=0.409 GT:AD:DP:GQ:PL 0/1:30,64:94:99:1711,0,695 7 76871113 rs17230060 A G 2155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.34;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.46;ReadPosRankSum=-0.235;SOR=0.65 GT:AD:DP:GQ:PL 0/1:43,88:131:99:2184,0,886 7 76885769 rs3108428 A G 917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.24;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-0.379;SOR=0.656 GT:AD:DP:GQ:PL 0/1:62,44:106:99:946,0,1457 7 76950035 rs6950870 C T 819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.622;SOR=0.788 GT:AD:DP:GQ:PL 0/1:36,38:74:99:848,0,860 7 76950699 rs17151692 C T 261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.71;ReadPosRankSum=1.223;SOR=0.59 GT:AD:DP:GQ:PL 0/1:24,15:39:99:290,0,610 7 76984572 rs2037753 G A 2755.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2784,290,0 7 76984752 rs11422745 C CA 275.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.489;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=0.85;QD=8.89;ReadPosRankSum=-0.455;SOR=0.33 GT:AD:DP:GQ:PL 0/1:16,15:41:99:313,0,289 7 76990126 rs4727365 C T 1106.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1135,117,0 7 76990178 rs4727366 C G 1589.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1618,164,0 7 76991935 rs1527263 C T 1491.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.63;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1520,162,0 7 77006717 rs34017497 CAAA C 728.73 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=80.97;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,9:21:63:614,63,0 7 77035392 rs6949654 T C 162.8 PASS AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.26;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,7:7:21:191,21,0 7 77539744 rs711309 G A 2013.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.376 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2042,198,0 7 77552127 rs848486 G A 1208.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.58;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1237,108,0 7 77756580 rs2074641 T C 7295.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7324,719,0 7 77756724 rs7812015 C T 3767.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.571 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3796,366,0 7 77885552 rs34937835 G A 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.138;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.656;SOR=0.852 GT:AD:DP:GQ:PL 0/1:122,121:243:99:2859,0,2891 7 80087981 rs2074673 A G 212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.94;ReadPosRankSum=1.83;SOR=0.719 GT:AD:DP:GQ:PL 0/1:40,14:54:99:241,0,1042 7 80088041 rs2074674 G A 513.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.34;ReadPosRankSum=-1.53;SOR=0.846 GT:AD:DP:GQ:PL 0/1:46,24:70:99:542,0,1203 7 80290369 rs3211892 A G 2487.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.73;SOR=1.905 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2516,228,0 7 80374342 rs1949971 A G 5207.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5236,483,0 7 80374438 rs1949972 T C 5185.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5214,504,0 7 80378319 rs2272351 G C 5276.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5305,514,0 7 80427495 rs1880959 C A 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.595;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.438;SOR=0.602 GT:AD:DP:GQ:PL 0/1:61,48:109:99:1075,0,1322 7 81346685 rs1800793 T C 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-1.206;SOR=0.826 GT:AD:DP:GQ:PL 0/1:59,52:111:99:1079,0,1323 7 81695842 . TA T 277.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.503;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.772;QD=8.17;ReadPosRankSum=-0.915;SOR=0.54 GT:AD:DP:GQ:PL 0/1:17,17:49:99:315,0,355 7 81964578 rs5885290 G GA 399.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.414;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.348;SOR=0.26 GT:AD:DP:GQ:PL 0/1:17,20:39:99:437,0,308 7 82387960 rs62465931 G A 943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.464;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=1.017;SOR=0.506 GT:AD:DP:GQ:PL 0/1:34,45:79:99:972,0,891 7 82389948 rs57607795 G T 396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=3.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=1.321;SOR=1.292 GT:AD:DP:GQ:PL 0/1:32,19:51:99:425,0,811 7 82544987 rs17156844 A G 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.456;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.882;SOR=0.658 GT:AD:DP:GQ:PL 0/1:87,71:158:99:1669,0,2018 7 82581488 rs10630259 T TTCA 7012.73 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;QD=44.67;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,157:157:99:7050,478,0 7 82581859 rs976714 C T 2371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-0.412;SOR=0.808 GT:AD:DP:GQ:PL 0/1:90,97:187:99:2400,0,2255 7 82582846 rs10954696 C T 1474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.961;SOR=0.421 GT:AD:DP:GQ:PL 0/1:52,61:113:99:1503,0,1366 7 82583609 rs10487648 A C 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.032;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=1.781;SOR=0.811 GT:AD:DP:GQ:PL 0/1:60,73:133:99:1838,0,1541 7 82784456 rs6972461 A G 8289.77 PASS AC=2;AF=1;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.58;QD=23.42;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,354:354:99:8318,934,0 7 83037731 rs61729612 C G 4102.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4131,431,0 7 83590852 rs797821 T C 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.174;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=1.169;SOR=0.799 GT:AD:DP:GQ:PL 0/1:95,72:167:99:1877,0,2250 7 83606518 rs701320 G A 1033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.11;SOR=0.527 GT:AD:DP:GQ:PL 0/1:55,46:101:99:1062,0,1472 7 83631376 rs3735513 T C 491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.8;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=0.069;SOR=0.815 GT:AD:DP:GQ:PL 0/1:30,20:50:99:520,0,789 7 83634712 rs147436181 C T 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.31;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.22;ReadPosRankSum=0.708;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,53:103:99:0|1:83634712_C_T:2111,0,2618 7 83634713 rs7804122 A G 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.13;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.03;ReadPosRankSum=0.688;SOR=0.682 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,54:104:99:0|1:83634712_C_T:2111,0,2618 7 83643681 rs2272222 A T 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.883;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=0.289;SOR=0.6 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,33:74:99:0|1:83643681_A_T:1159,0,1975 7 83643687 rs2272221 G A 1009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.11;ReadPosRankSum=1.358;SOR=0.632 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,26:59:99:0|1:83643681_A_T:1038,0,1865 7 84628989 rs7800072 T G 2382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.251;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.99;ReadPosRankSum=2.382;SOR=0.865 GT:AD:DP:GQ:PL 0/1:71,88:159:99:2411,0,1811 7 84644500 rs17559084 C T 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.28;ReadPosRankSum=0.333;SOR=0.495 GT:AD:DP:GQ:PL 0/1:34,70:104:99:1825,0,789 7 86415987 rs2228595 C T 2738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.271;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=5.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.599;SOR=0.916 GT:AD:DP:GQ:PL 0/1:111,109:220:99:2767,0,2786 7 86800351 rs3747807 A G 2504.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2533,269,0 7 87005287 rs59190666 C CT 788.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.208;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.557;QD=17.53;ReadPosRankSum=-1.477;SOR=1.381 GT:AD:DP:GQ:PL 0/1:10,35:49:97:826,0,97 7 87032613 rs31653 A G 2868.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.396 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2897,281,0 7 87053206 rs31668 G A 4418.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=1.233 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4447,447,0 7 87082292 rs1202283 G A 4546.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4575,446,0 7 87160618 rs2032582 A C 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.564;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-1.879;SOR=0.545 GT:AD:DP:GQ:PL 0/1:53,31:84:99:872,0,1347 7 87179601 rs1128503 A G 1838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.011;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.666;SOR=0.765 GT:AD:DP:GQ:PL 0/1:84,72:156:99:1867,0,2089 7 87229440 rs9282564 T C 839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.567;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=0.532;SOR=0.6 GT:AD:DP:GQ:PL 0/1:52,38:90:99:868,0,1229 7 87229501 rs2214102 T C 786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.455;SOR=0.883 GT:AD:DP:GQ:PL 0/1:46,37:83:99:815,0,1054 7 87564497 rs2279542 C G 3852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.588;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-1.064;SOR=0.773 GT:AD:DP:GQ:PL 0/1:160,169:329:99:3881,0,3408 7 87913361 rs1981529 C T 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.148;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.187;SOR=0.649 GT:AD:DP:GQ:PL 0/1:81,79:160:99:1956,0,2296 7 88424115 rs2373396 C G 1889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.351;SOR=0.828 GT:AD:DP:GQ:PL 0/1:81,73:154:99:1918,0,2233 7 88847451 rs4140973 A T 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.044;SOR=0.519 GT:AD:DP:GQ:PL 0/1:45,51:96:99:1219,0,1149 7 88964000 rs801839 C T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-0.207;SOR=0.623 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1473,0,1986 7 88964196 rs801840 T A 1651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.656;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.935;SOR=0.805 GT:AD:DP:GQ:PL 0/1:79,70:149:99:1680,0,1845 7 88964226 rs79931924 C A 2365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.67;ReadPosRankSum=1.853;SOR=0.833 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,64:151:99:0|1:88964226_C_A:2394,0,4299 7 88964227 rs76870774 C G 2365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.77;ReadPosRankSum=1.705;SOR=0.857 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,64:150:99:0|1:88964226_C_A:2394,0,4299 7 88965141 rs6962993 A G 2412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.071;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=3.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.146;SOR=0.523 GT:AD:DP:GQ:PL 0/1:108,95:203:99:2441,0,2621 7 88965609 rs6963781 A G 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.124;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.269;SOR=0.607 GT:AD:DP:GQ:PL 0/1:82,65:147:99:1640,0,2255 7 89854446 rs194520 T G 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.149;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=5.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.416;SOR=0.506 GT:AD:DP:GQ:PL 0/1:65,58:123:99:1317,0,1512 7 89856608 rs110360 C T 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=1.081;SOR=0.678 GT:AD:DP:GQ:PL 0/1:81,69:150:99:1546,0,1976 7 89861832 rs194524 G A 1295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=5.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.862;SOR=1.203 GT:AD:DP:GQ:PL 0/1:66,53:119:99:1324,0,1653 7 89861890 rs194525 G T 3997.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4026,417,0 7 89861942 rs194526 C T 4137.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4166,426,0 7 89897703 rs17863057 A C 813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=5.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=-1.07;SOR=0.272 GT:AD:DP:GQ:PL 0/1:25,34:59:99:842,0,589 7 89912301 rs1029365 G A 3470.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3499,353,0 7 89938588 rs7803620 C G 1647.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1676,165,0 7 89938680 rs1134956 C T 1488.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.12;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1517,168,0 7 89983808 rs42663 T G 1887.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1916,203,0 7 89984409 rs42664 A G 1454.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1483,146,0 7 90042176 rs17862175 C T 2733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.36;ReadPosRankSum=2.041;SOR=0.586 GT:AD:DP:GQ:PL 0/1:71,107:178:99:2762,0,1798 7 90225928 rs7782773 T C 3883.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3912,407,0 7 90894459 rs139480179 A ACCG 1304.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.94;ReadPosRankSum=-0.621;SOR=0.762 GT:AD:DP:GQ:PL 0/1:43,34:77:99:1342,0,1836 7 91503228 rs10266424 C T 1775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=6.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=-1.554;SOR=0.904 GT:AD:DP:GQ:PL 0/1:59,70:129:99:1804,0,1496 7 91630620 rs6964587 G T 1856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.931;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-1.769;SOR=0.648 GT:AD:DP:GQ:PL 0/1:97,82:179:99:1885,0,2699 7 91632306 rs1989779 C T 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.715;SOR=0.848 GT:AD:DP:GQ:PL 0/1:84,82:166:99:1955,0,2161 7 91641928 rs13245393 A G 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.646;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.556;SOR=0.483 GT:AD:DP:GQ:PL 0/1:58,65:123:99:1671,0,1433 7 91652178 rs10644111 A AAAC 1884.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.214;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.29;ReadPosRankSum=1.132;SOR=1.008 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1922,0,2602 7 91674302 rs9785013 G A 964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=1.767;SOR=0.781 GT:AD:DP:GQ:PL 0/1:30,38:68:99:993,0,800 7 91691601 rs10236397 C T 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-1.075;SOR=0.693 GT:AD:DP:GQ:PL 0/1:47,47:94:99:1144,0,1301 7 91707197 rs733957 C T 841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.809;SOR=0.599 GT:AD:DP:GQ:PL 0/1:31,35:66:99:870,0,768 7 91708898 rs35759833 A G 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.209;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.5;ReadPosRankSum=1.576;SOR=0.56 GT:AD:DP:GQ:PL 0/1:64,75:139:99:2183,0,1710 7 91712698 rs6960867 A G 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.737;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=7.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-1.576;SOR=0.861 GT:AD:DP:GQ:PL 0/1:77,69:146:99:1825,0,2016 7 91713972 rs10228334 C T 457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-0.968;SOR=0.569 GT:AD:DP:GQ:PL 0/1:28,20:48:99:486,0,770 7 91714911 rs1063242 C T 3604.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3633,378,0 7 91715662 rs28927678 C T 1982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=-0.726;SOR=0.833 GT:AD:DP:GQ:PL 0/1:60,83:143:99:2011,0,1382 7 91726927 rs1063243 A C 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.275;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.84;ReadPosRankSum=0.622;SOR=0.587 GT:AD:DP:GQ:PL 0/1:45,59:104:99:1572,0,1015 7 91743150 rs7797834 A G 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.51;ReadPosRankSum=0.205;SOR=0.432 GT:AD:DP:GQ:PL 0/1:23,39:62:99:928,0,520 7 91779971 rs6465353 T G 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.645;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=0.913;SOR=0.449 GT:AD:DP:GQ:PL 0/1:58,64:122:99:1748,0,1316 7 91936975 . AT A 229.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.24;ReadPosRankSum=-1.737;SOR=0.405 GT:AD:DP:GQ:PL 0/1:50,21:75:99:267,0,1110 7 92027187 rs38793 A G 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.53;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.662;SOR=0.779 GT:AD:DP:GQ:PL 0/1:90,80:170:99:2152,0,2230 7 92028039 rs38794 C A 2111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.209;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.09;SOR=0.684 GT:AD:DP:GQ:PL 0/1:112,97:209:99:2140,0,3116 7 92129161 rs5885806 CA C 1019.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.262;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=0.408;QD=22.66;ReadPosRankSum=-1.464;SOR=0.677 GT:AD:DP:GQ:PL 1/1:3,42:53:75:1021,75,0 7 92131289 rs10278857 G T 3031.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3060,294,0 7 92147584 rs38809 C T 1207.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1236,126,0 7 93055650 rs1042138 G A 709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=0.127;SOR=0.558 GT:AD:DP:GQ:PL 0/1:22,29:51:99:738,0,583 7 93055753 rs1801197 A G 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=1.312;SOR=0.555 GT:AD:DP:GQ:PL 0/1:57,74:131:99:1655,0,1338 7 93098135 rs139734304 T TAAACAAACAAAC 713.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.198;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.52;ReadPosRankSum=-0.155;SOR=0.551 GT:AD:DP:GQ:PL 0/1:26,20:46:99:751,0,3012 7 93116299 rs2301680 A G 463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.311;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.858;SOR=0.807 GT:AD:DP:GQ:PL 0/1:16,20:36:99:492,0,311 7 93540153 rs17243826 G A 848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.021;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-1.486;SOR=0.731 GT:AD:DP:GQ:PL 0/1:37,40:77:99:877,0,793 7 94027043 rs144776919 C CT 30.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.63;ReadPosRankSum=-0.095;SOR=0.356 GT:AD:DP:GQ:PL 0/1:41,8:51:68:68,0,881 7 94038934 rs42518 C T 4783.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4812,483,0 7 94039032 rs42519 C T 5751.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5780,575,0 7 94041937 rs412777 A C 3966.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3995,435,0 7 94043239 rs42524 C G 2890.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2919,294,0 7 94173803 rs13242090 T C 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.362;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-1.279;SOR=0.416 GT:AD:DP:GQ:PL 0/1:53,52:105:99:1210,0,1203 7 94174854 rs3793326 T C 944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.233;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=1.963;SOR=0.532 GT:AD:DP:GQ:PL 0/1:30,37:67:99:973,0,754 7 94227275 . C T 651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=1.072;QD=11.64;ReadPosRankSum=-2.307;SOR=0.671 GT:AD:DP:GQ:PL 0/1:27,29:56:99:680,0,578 7 94227276 rs10247562 T G 1986.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.84;QD=35.48;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:2015,168,0 7 94946084 rs854560 A T 791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.696;SOR=0.583 GT:AD:DP:GQ:PL 0/1:41,36:77:99:820,0,1007 7 95125050 rs35506436 CT C 683.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.949;QD=10.85;ReadPosRankSum=1.57;SOR=0.308 GT:AD:DP:GQ:PL 0/1:23,40:77:99:721,0,430 7 95775848 rs72289549 TA T 237.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.73;ReadPosRankSum=0.48;SOR=0.614 GT:AD:DP:GQ:PL 0/1:63,24:108:99:275,0,1545 7 95800820 rs2301629 T C 980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=4.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=1.234;SOR=0.996 GT:AD:DP:GQ:PL 0/1:30,41:71:99:1009,0,764 7 95864108 rs6957975 T C 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=8.367;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.69;ReadPosRankSum=0.922;SOR=0.252 GT:AD:DP:GQ:PL 0/1:36,65:101:99:1512,0,774 7 96635420 . A AGCC 2214.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0;DP=201;ExcessHet=3.0103;FS=11.632;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=2.095;QD=17.04;ReadPosRankSum=0.466;SOR=0.229 GT:AD:DP:GQ:PL 0/1:67,63:130:99:2252,0,2576 7 97483921 rs1049677 G C 1672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.384;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.04;SOR=0.892 GT:AD:DP:GQ:PL 0/1:104,64:168:99:1701,0,2741 7 97488569 rs1049674 A T 2907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=2.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-0.454;SOR=0.647 GT:AD:DP:GQ:PL 0/1:105,120:225:99:2936,0,2406 7 97784061 rs17435590 T C 423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=2.732;SOR=0.56 GT:AD:DP:GQ:PL 0/1:31,19:50:99:452,0,732 7 97816327 rs6465657 C T 749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.695;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=4.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=-0.645;SOR=0.304 GT:AD:DP:GQ:PL 0/1:25,27:52:99:778,0,636 7 97822115 rs11765552 T A 1463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=0.442;SOR=0.656 GT:AD:DP:GQ:PL 0/1:51,60:111:99:1492,0,1270 7 97822210 rs3801294 G A 1979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=0.305;SOR=0.843 GT:AD:DP:GQ:PL 0/1:64,84:148:99:2008,0,1370 7 97854393 rs2291745 G A 2024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=6.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.256;SOR=1.155 GT:AD:DP:GQ:PL 0/1:79,86:165:99:2053,0,1991 7 97863145 rs2291750 G A 2611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=5.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=1.315;SOR=0.675 GT:AD:DP:GQ:PL 0/1:111,109:220:99:2640,0,2830 7 97922851 rs12728 C T 1073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.41;ReadPosRankSum=0.994;SOR=0.766 GT:AD:DP:GQ:PL 0/1:90,55:145:99:1102,0,2129 7 97922875 rs13008 G A 1089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.22;ReadPosRankSum=0.782;SOR=0.519 GT:AD:DP:GQ:PL 0/1:94,57:151:99:1118,0,2277 7 97933601 rs1045916 C T 2956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.932;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.11;SOR=0.707 GT:AD:DP:GQ:PL 0/1:118,135:253:99:2985,0,2891 7 97944933 rs11385557 A AT 1052.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.146;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-2.881;SOR=1.079 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,34:88:99:0|1:97944933_A_AT:1090,0,2472 7 97944935 rs11385558 A AT 1052.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.289;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=8.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-1.29;SOR=1.681 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,26:80:99:0|1:97944933_A_AT:1090,0,2472 7 97944937 rs372695844 A ATAAT 880.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.044;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=13.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.758;SOR=2.259 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,24:78:99:0|1:97944933_A_AT:918,0,2496 7 98460824 rs10238224 C A 7876.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,266:266:99:7905,797,0 7 98558880 rs160384 G C 3627.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=1.437 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3656,352,0 7 98648517 rs57957340 TG T 386.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-1.894;SOR=0.132 GT:AD:DP:GQ:PL 0/1:15,19:34:99:424,0,314 7 98650051 rs219797 G C 2091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.272;SOR=0.675 GT:AD:DP:GQ:PL 0/1:94,93:187:99:2120,0,2255 7 98782750 rs10953283 C T 3154.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3183,330,0 7 99293475 rs2740565 T A 3884.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3913,391,0 7 99306685 rs2257401 C G 7433.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=32.32;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7462,690,0 7 99445868 . A C 1470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.164;SOR=0.745 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1499,0,1736 7 99459256 rs17342647 C T 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.719;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.69;SOR=1.225 GT:AD:DP:GQ:PL 0/1:79,64:143:99:1601,0,1895 7 99474427 rs2572023 A G 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.705;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.625;SOR=0.783 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1463,0,1659 7 99500899 rs2247762 T C 620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=5.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.21;ReadPosRankSum=-0.057;SOR=1.239 GT:AD:DP:GQ:PL 0/1:71,29:100:99:649,0,1808 7 99500911 rs2247761 A G 509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.2;ReadPosRankSum=2.199;SOR=1.145 GT:AD:DP:GQ:PL 0/1:72,26:98:99:538,0,1860 7 99662511 rs71689664 GTAGT G 98.25 PASS AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,3:3:9:135,9,0 7 99696797 rs2070215 T C 5358.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.49;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5387,480,0 7 99697041 . CA C 176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.569;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=2.083;QD=3.27;ReadPosRankSum=-1.58;SOR=0.746 GT:AD:DP:GQ:PL 0/1:38,16:75:99:205,0,752 7 99699626 rs2293481 T C 3021.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3050,309,0 7 99707712 rs2272338 A G 6143.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6172,567,0 7 99711040 rs4134903 G A 3497.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=29.64;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3526,354,0 7 99722266 rs1880949 G T 3437.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3466,336,0 7 99747130 rs12878 G A 2501.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2530,257,0 7 99751017 rs3736591 A G 1749.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1778,174,0 7 99757612 rs3823646 G A 5708.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5737,561,0 7 99758136 rs3800951 T G 5610.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.986;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=3.429;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.33;ReadPosRankSum=-0.491;SOR=0.545 GT:AD:DP:GQ:PL 1/1:1,184:185:99:5639,544,0 7 99772298 rs10252037 A C 3361.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.68;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3390,378,0 7 99786108 rs61756195 T C 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.847;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=-0.81;QD=9.58;ReadPosRankSum=-0.656;SOR=0.643 GT:AD:DP:GQ:PL 0/1:47,32:79:99:785,0,1104 7 99796146 rs3735241 A C 4524.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4553,488,0 7 99799845 rs1043915 T A 5505.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5534,564,0 7 100170102 . G A 2266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0;DP=199;ExcessHet=3.0103;FS=6.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=1.068;SOR=0.591 GT:AD:DP:GQ:PL 0/1:102,97:199:99:2295,0,2506 7 100175473 rs909152 T C 1822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=0.79;SOR=0.627 GT:AD:DP:GQ:PL 0/1:61,73:134:99:1851,0,1468 7 100281768 rs221794 T C 4742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.434;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=-1.005;QD=12.55;ReadPosRankSum=-0.646;SOR=0.651 GT:AD:DP:GQ:PL 0/1:187,191:378:99:4771,0,4370 7 100284913 rs221796 C G 1722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.184;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=4.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-1.143;SOR=0.877 GT:AD:DP:GQ:PL 0/1:72,75:147:99:1751,0,1573 7 100285718 rs140818923 G A 2935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.605;SOR=0.621 GT:AD:DP:GQ:PL 0/1:96,120:216:99:2964,0,2340 7 100319680 . CT C 156.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.658;QD=2.24;ReadPosRankSum=0.413;SOR=0.822 GT:AD:DP:GQ:PL 0/1:52,18:91:99:194,0,1214 7 100371100 rs2734880 C A 2614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.619;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=2.489;SOR=0.758 GT:AD:DP:GQ:PL 0/1:164,113:277:99:2643,0,3871 7 100371114 rs314298 C T 2575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.731;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.223;SOR=0.962 GT:AD:DP:GQ:PL 0/1:150,109:259:99:2604,0,3564 7 100371473 rs314299 C T 3168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=1.263;SOR=0.598 GT:AD:DP:GQ:PL 0/1:115,127:242:99:3197,0,4416 7 100371474 rs78193191 G A 4354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.07;ReadPosRankSum=-0.937;SOR=0.788 GT:AD:DP:GQ:PGT:PID:PL 0/1:128,113:241:99:0|1:100371474_G_A:4383,0,5090 7 100371476 rs148800656 T TG 4348.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.264;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.513;QD=17.9;ReadPosRankSum=-1.224;SOR=0.757 GT:AD:DP:GQ:PGT:PID:PL 0/1:129,114:243:99:0|1:100371474_G_A:4386,0,5069 7 100373077 rs542137 C G 4314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=-0.728;SOR=0.718 GT:AD:DP:GQ:PL 0/1:136,160:296:99:4343,0,3370 7 100373271 rs540330 G T 3425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.611;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=4.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-1.188;SOR=0.871 GT:AD:DP:GQ:PL 0/1:178,143:321:99:3454,0,4132 7 100373367 rs539445 G C 3093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.188;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=7.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.984;SOR=0.572 GT:AD:DP:GQ:PL 0/1:145,121:266:99:3122,0,3716 7 100374087 rs314300 A G 2558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.528;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-0.978;QD=11.27;ReadPosRankSum=-0.53;SOR=0.681 GT:AD:DP:GQ:PL 0/1:115,112:227:99:2587,0,2674 7 100377082 rs531503 T C 3519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-1.101;SOR=0.542 GT:AD:DP:GQ:PL 0/1:118,144:262:99:3548,0,2960 7 100377373 rs482308 G A 3131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.277;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-1.38;SOR=0.707 GT:AD:DP:GQ:PL 0/1:123,131:254:99:3160,0,2877 7 100383605 rs160602 T A 2239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.808;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.632;SOR=0.755 GT:AD:DP:GQ:PL 0/1:121,91:212:99:2268,0,3000 7 100385561 rs72364644 GGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT G 6039.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.189;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.935;QD=16.87;ReadPosRankSum=0.938;SOR=1.034 GT:AD:DP:GQ:PL 0/1:198,160:358:99:6077,0,9271 7 100386900 rs191137 T C 7521.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7550,787,0 7 100391581 rs314339 T C 3806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.482;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=2.177;SOR=0.691 GT:AD:DP:GQ:PL 0/1:149,153:302:99:3835,0,3496 7 100391644 rs314340 T C 7910.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7939,762,0 7 100395003 rs314344 G C 1804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.185;SOR=0.938 GT:AD:DP:GQ:PL 0/1:102,79:181:99:1833,0,2675 7 100410597 rs2230585 G A 4463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.995;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=1.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.705;SOR=0.621 GT:AD:DP:GQ:PL 0/1:190,197:387:99:4492,0,4893 7 100411278 rs314359 T C 1655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=1.652;SOR=0.537 GT:AD:DP:GQ:PL 0/1:87,75:162:99:1684,0,1915 7 100416250 rs144173 A G 2813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-1.455;SOR=0.504 GT:AD:DP:GQ:PL 0/1:130,126:256:99:2842,0,3204 7 100424586 rs35907339 CG C 1155.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.846;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.81;ReadPosRankSum=1.297;SOR=0.609 GT:AD:DP:GQ:PL 0/1:83,65:148:99:1193,0,2726 7 100458795 rs314378 T C 2781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.257;SOR=0.609 GT:AD:DP:GQ:PL 0/1:115,124:239:99:2810,0,2788 7 100467975 rs10627414 C CCT 6121.73 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.93;QD=44.68;SOR=1.246 GT:AD:DP:GQ:PL 1/1:0,137:137:99:6159,427,0 7 100468284 rs1054391 A G 4200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.861;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.437;SOR=0.702 GT:AD:DP:GQ:PL 0/1:189,177:366:99:4229,0,4288 7 100482026 rs15624 T C 2862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.557;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-1.442;SOR=0.706 GT:AD:DP:GQ:PL 0/1:98,111:209:99:2891,0,2336 7 100482526 rs6942607 C G 2132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=5.341;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.04;ReadPosRankSum=-0.589;SOR=1.136 GT:AD:DP:GQ:PL 0/1:54,79:133:99:2161,0,1342 7 100486088 rs3087504 C T 2491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.729;SOR=0.913 GT:AD:DP:GQ:PL 0/1:106,106:212:99:2520,0,2536 7 100486656 rs13241786 T G 3599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.052;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.159;SOR=0.723 GT:AD:DP:GQ:PL 0/1:142,140:282:99:3628,0,3500 7 100486754 rs12666989 G C 2746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=7.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.494;SOR=1.131 GT:AD:DP:GQ:PL 0/1:117,104:221:99:2775,0,3191 7 100488658 rs1799806 G C 2287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=3.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.351;SOR=0.488 GT:AD:DP:GQ:PL 0/1:120,99:219:99:2316,0,3124 7 100552017 rs9691167 C T 4852.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.59;QD=31.11;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4881,467,0 7 100552251 rs9691900 T C 5191.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.86;QD=33.07;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5220,471,0 7 100552915 rs2904852 A C 7586.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.47;QD=32.15;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7615,708,0 7 100607851 rs6960854 C G 3502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0;DB;DP=474;ExcessHet=3.0103;FS=6.24;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-4.006;QD=7.66;ReadPosRankSum=3.831;SOR=1.021 GT:AD:DP:GQ:PL 0/1:291,166:457:99:3531,0,7746 7 100607871 rs6960868 C T 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.387;ClippingRankSum=0;DB;DP=429;ExcessHet=3.0103;FS=8.61;MLEAC=1;MLEAF=0.5;MQ=59.61;MQRankSum=-4.132;QD=7.34;ReadPosRankSum=3.401;SOR=1.229 GT:AD:DP:GQ:PL 0/1:270,145:415:99:3075,0,7391 7 100607903 rs6961167 G A 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.478;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=15.182;MLEAC=1;MLEAF=0.5;MQ=59.51;MQRankSum=-4.629;QD=6.34;ReadPosRankSum=-1.277;SOR=1.358 GT:AD:DP:GQ:PL 0/1:235,101:336:99:2159,0,6290 7 100610069 rs10258821 C T 3421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.492;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.09;SOR=0.774 GT:AD:DP:GQ:PL 0/1:135,141:276:99:3450,0,3609 7 100634640 rs1791 T G 7090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.385;ClippingRankSum=0;DB;DP=534;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.952;QD=13.33;ReadPosRankSum=0.037;SOR=0.681 GT:AD:DP:GQ:PL 0/1:254,278:532:99:7119,0,5850 7 100634783 rs11770526 A C 6035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.918;ClippingRankSum=0;DB;DP=549;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-2.07;SOR=0.654 GT:AD:DP:GQ:PL 0/1:296,252:548:99:6064,0,7039 7 100635143 rs34337783 T C 4094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.114;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=0.223;SOR=0.846 GT:AD:DP:GQ:PL 0/1:173,141:314:99:4123,0,4315 7 100635535 rs35240454 C T 6303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0;DB;DP=547;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=1.636;QD=11.52;ReadPosRankSum=-0.732;SOR=0.908 GT:AD:DP:GQ:PL 0/1:290,257:547:99:6332,0,7373 7 100635661 rs10953313 T C 6764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.013;ClippingRankSum=0;DB;DP=498;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-1.833;QD=13.69;ReadPosRankSum=-0.738;SOR=0.87 GT:AD:DP:GQ:PL 0/1:225,269:494:99:6793,0,4920 7 100635767 rs34214710 G C 5889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0;DB;DP=493;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0;QD=12;ReadPosRankSum=-0.37;SOR=0.711 GT:AD:DP:GQ:PL 0/1:243,248:491:99:5918,0,5970 7 100635890 rs35002853 C T 6882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.12;ClippingRankSum=0;DB;DP=565;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=58.01;MQRankSum=0.317;QD=12.29;ReadPosRankSum=-0.425;SOR=0.584 GT:AD:DP:GQ:PL 0/1:262,298:560:99:6911,0,5828 7 100636147 rs34196598 C T 5677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.494;ClippingRankSum=0;DB;DP=647;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.5;MQ=41.23;MQRankSum=-10.656;QD=8.8;ReadPosRankSum=0.699;SOR=0.618 GT:AD:DP:GQ:PL 0/1:371,274:645:99:5706,0,8978 7 100636207 rs147681181 C A 5239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0;DB;DP=609;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.3;MQRankSum=-9.427;QD=8.62;ReadPosRankSum=-0.309;SOR=0.713 GT:AD:DP:GQ:PL 0/1:360,248:608:99:5268,0,9016 7 100636408 rs142190605 G A 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0;DB;DP=421;ExcessHet=3.0103;FS=23.399;MLEAC=1;MLEAF=0.5;MQ=48.99;MQRankSum=-9.111;QD=3.12;ReadPosRankSum=-1.858;SOR=2.119 GT:AD:DP:GQ:PL 0/1:333,87:420:99:1340,0,9131 7 100636722 rs201822262 G C 3861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.257;ClippingRankSum=0;DB;DP=546;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.21;MQRankSum=-11.325;QD=7.07;ReadPosRankSum=1.803;SOR=0.699 GT:AD:DP:GQ:PL 0/1:333,213:546:99:3890,0,8339 7 100637193 rs77621644 C A 5384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.093;ClippingRankSum=0;DB;DP=713;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.5;MQ=51.7;MQRankSum=5.442;QD=7.57;ReadPosRankSum=5.27;SOR=0.537 GT:AD:DP:GQ:PL 0/1:447,264:711:99:5413,0,11795 7 100637338 rs76001002 G C 5282.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0;DB;DP=529;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=51.95;MQRankSum=-18.799;QD=10.01;ReadPosRankSum=-0.419;SOR=0.647 GT:AD:DP:GQ:PL 0/1:291,237:528:99:5311,0,7423 7 100637839 rs202092843 C G 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.578;ClippingRankSum=0;DB;DP=421;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.09;MQRankSum=-10.989;QD=2.23;ReadPosRankSum=4.445;SOR=0.705 GT:AD:DP:GQ:PL 0/1:331,89:420:99:966,0,8714 7 100638158 rs200568171 C T 57.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.38;MQRankSum=-2.002;QD=2.51;ReadPosRankSum=0.93;SOR=0.141 GT:AD:DP:GQ:PL 0/1:17,6:23:86:86,0,475 7 100638611 rs200598041 A G 2037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.362;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=19.234;MLEAC=1;MLEAF=0.5;MQ=40.7;MQRankSum=-6.105;QD=5.81;ReadPosRankSum=2.23;SOR=0.434 GT:AD:DP:GQ:PL 0/1:232,119:351:99:2066,0,5864 7 100638705 rs77884908 G C 1331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.085;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=13.254;MLEAC=1;MLEAF=0.5;MQ=51.27;MQRankSum=-12.333;QD=3.08;ReadPosRankSum=-4.144;SOR=1.6 GT:AD:DP:GQ:PGT:PID:PL 0/1:347,85:432:99:0|1:100638705_G_C:1360,0,18152 7 100638746 rs10249343 T C 57.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.664;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=55.531;MLEAC=1;MLEAF=0.5;MQ=58.11;MQRankSum=-12.823;QD=0.17;ReadPosRankSum=-0.787;SOR=4.802 GT:AD:DP:GQ:PGT:PID:PL 0/1:320,22:342:86:0|1:100638705_G_C:86,0,19410 7 100638756 rs75280441 A G 134.77 SNP_QD_filter;SNP_FS_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.396;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=91.766;MLEAC=1;MLEAF=0.5;MQ=57.63;MQRankSum=-13.809;QD=0.38;ReadPosRankSum=-2.192;SOR=6.869 GT:AD:DP:GQ:PGT:PID:PL 0/1:329,30:359:99:0|1:100638705_G_C:163,0,19070 7 100638856 rs76496013 A G 4762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0;DB;DP=553;ExcessHet=3.0103;FS=8.273;MLEAC=1;MLEAF=0.5;MQ=56.79;MQRankSum=-4.298;QD=8.61;ReadPosRankSum=4.492;SOR=1.001 GT:AD:DP:GQ:PL 0/1:326,227:553:99:4791,0,8021 7 100639012 rs55638317 C T 4763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.027;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.07;MQRankSum=0.396;QD=11.56;ReadPosRankSum=0.235;SOR=0.719 GT:AD:DP:GQ:PL 0/1:213,199:412:99:4792,0,5918 7 100639040 rs28459498 C T 5764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0.397;MLEAC=1;MLEAF=0.5;MQ=50.25;MQRankSum=0.906;QD=17.11;ReadPosRankSum=0.125;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 0/1:183,154:337:99:0|1:100639040_C_T:5793,0,7582 7 100639049 rs56357244 G C 5738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.5;MQ=49.17;MQRankSum=0.908;QD=17.93;ReadPosRankSum=-0.548;SOR=0.727 GT:AD:DP:GQ:PGT:PID:PL 0/1:172,148:320:99:0|1:100639040_C_T:5767,0,7296 7 100639066 rs28483629 C T 4258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.283;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.98;MLEAC=1;MLEAF=0.5;MQ=45.26;MQRankSum=0.625;QD=16.38;ReadPosRankSum=-0.069;SOR=0.61 GT:AD:DP:GQ:PGT:PID:PL 0/1:145,115:260:99:0|1:100639040_C_T:4287,0,6101 7 100639095 rs71557212 A C 2734.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.473;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=38.98;MQRankSum=0.399;QD=15.19;ReadPosRankSum=-0.157;SOR=0.627 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,78:180:99:0|1:100639095_A_C:2763,0,4078 7 100639112 rs28585369 G C 2366.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.04;MQRankSum=1.259;QD=15.99;ReadPosRankSum=0.241;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,63:148:99:0|1:100639095_A_C:2395,0,3688 7 100639139 rs71557213 C T 1283.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.454;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.84;MLEAC=1;MLEAF=0.5;MQ=39.08;MQRankSum=1.601;QD=11.78;ReadPosRankSum=0.361;SOR=1.356 GT:AD:DP:GQ:PL 0/1:64,45:109:99:1312,0,1879 7 100639540 rs199570440 C T 348.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.773;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.45;MQRankSum=1.077;QD=1.92;ReadPosRankSum=-3.734;SOR=0.029 GT:AD:DP:GQ:PL 0/1:156,26:182:99:377,0,5167 7 100639799 rs137877084 C T 2703.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-8.332;ClippingRankSum=0;DB;DP=1674;ExcessHet=3.0103;FS=13.354;MLEAC=1;MLEAF=0.5;MQ=34.16;MQRankSum=0.963;QD=1.62;ReadPosRankSum=3.288;SOR=2.23 GT:AD:DP:GQ:PL 0/1:1443,229:1673:99:2732,0,43090 7 100641059 . T C 58.28 SNP_MQ_filter AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24;QD=19.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:86,9,0 7 100641088 . C G 36.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0;DP=7;ExcessHet=3.0103;FS=15.441;MLEAC=1;MLEAF=0.5;MQ=24;MQRankSum=-0;QD=5.25;ReadPosRankSum=2.189;SOR=2.775 GT:AD:DP:GQ:PL 0/1:4,3:7:65:65,0,94 7 100641221 rs200120880 C T 3253.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-10.039;ClippingRankSum=0;DB;DP=604;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.5;MQ=30.22;MQRankSum=0.245;QD=5.39;ReadPosRankSum=0.009;SOR=0.827 GT:AD:DP:GQ:PL 0/1:431,173:604:99:3282,0,11148 7 100641492 rs145971361 A G 138.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.884;ClippingRankSum=-0;DB;DP=9;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.5;MQ=34.7;MQRankSum=-1.275;QD=15.42;ReadPosRankSum=-1.884;SOR=3.901 GT:AD:DP:GQ:PL 0/1:3,6:9:52:167,0,52 7 100641872 rs139851927 T C 5294.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=17.119;ClippingRankSum=0;DB;DP=430;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.94;MQRankSum=-5.266;QD=12.37;ReadPosRankSum=0.399;SOR=0.77 GT:AD:DP:GQ:PL 0/1:206,222:428:99:5323,0,4838 7 100642455 rs200303708 G A 1897.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.638;ClippingRankSum=0;DB;DP=1462;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.24;MQRankSum=-2.07;QD=1.3;ReadPosRankSum=-0.118;SOR=0.699 GT:AD:DP:GQ:PL 0/1:1246,214:1460:99:1926,0,34119 7 100642924 . G A 45.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.675;ClippingRankSum=0;DP=22;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.5;MQ=33.11;MQRankSum=1.508;QD=2.08;ReadPosRankSum=-2.435;SOR=2.11 GT:AD:DP:GQ:PL 0/1:18,4:22:74:74,0,583 7 100642986 rs149850933 G A 75.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0;DB;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.5;MQ=28.92;MQRankSum=0.15;QD=3.99;ReadPosRankSum=1.25;SOR=2.133 GT:AD:DP:GQ:PL 0/1:14,5:19:99:104,0,405 7 100643060 rs147467999 T A 728.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.55;MQRankSum=-0.412;QD=8.47;ReadPosRankSum=-0.221;SOR=0.593 GT:AD:DP:GQ:PL 0/1:60,26:86:99:757,0,1621 7 100643080 rs139875131 C T 175.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.168;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=30.91;MQRankSum=-0.647;QD=1.39;ReadPosRankSum=0.814;SOR=0.117 GT:AD:DP:GQ:PL 0/1:108,18:126:99:204,0,3952 7 100643088 rs145334771 A G 76.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=31.81;MQRankSum=1.451;QD=0.47;ReadPosRankSum=0.573;SOR=0.06 GT:AD:DP:GQ:PL 0/1:145,17:162:99:105,0,4590 7 100643282 rs142179973 A G 15782.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.675;ClippingRankSum=0;DB;DP=2571;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.56;MQRankSum=-3.512;QD=6.14;ReadPosRankSum=0.993;SOR=0.718 GT:AD:DP:GQ:PL 0/1:1768,801:2569:99:15811,0,47491 7 100643490 rs201689181 G T 4924.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.481;ClippingRankSum=0;DB;DP=3490;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.5;MQ=53.61;MQRankSum=7.749;QD=1.41;ReadPosRankSum=-0.783;SOR=0.638 GT:AD:DP:GQ:PL 0/1:2986,502:3488:99:4953,0,85310 7 100643594 rs138085556 T A 10267.8 SNP_MQRankSum_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=18.818;ClippingRankSum=0;DB;DP=2573;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.5;MQ=50.45;MQRankSum=-36.514;QD=4;ReadPosRankSum=-13.759;SOR=0.854 GT:AD:DP:GQ:PL 0/1:2042,527:2569:99:10296,0,53002 7 100644027 rs140825627 C A 3880.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-14.634;ClippingRankSum=0;DB;DP=631;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.34;MQRankSum=-1.415;QD=6.15;ReadPosRankSum=1.239;SOR=0.58 GT:AD:DP:GQ:PL 0/1:438,193:631:99:3909,0,12001 7 100644303 rs144363228 G A 934.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.712;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=17.185;MLEAC=1;MLEAF=0.5;MQ=32.7;MQRankSum=2.941;QD=4.08;ReadPosRankSum=0.635;SOR=2.323 GT:AD:DP:GQ:PL 0/1:183,46:229:99:963,0,5389 7 100645525 rs140153344 A C 419.77 SNP_QD_filter;SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.846;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=80.283;MLEAC=1;MLEAF=0.5;MQ=33.33;MQRankSum=-0.029;QD=1.8;ReadPosRankSum=-1.714;SOR=6.748 GT:AD:DP:GQ:PL 0/1:196,37:233:99:448,0,4837 7 100645825 rs184183841 C A 12270.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.126;ClippingRankSum=0;DB;DP=2385;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=47.94;MQRankSum=1.987;QD=5.15;ReadPosRankSum=1.264;SOR=0.732 GT:AD:DP:GQ:PL 0/1:1697,684:2381:99:12299,0,46779 7 100645834 rs144528934 A G 375.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=2265;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=47.17;MQRankSum=0.91;QD=0.17;ReadPosRankSum=0.33;SOR=0.733 GT:AD:DP:GQ:PL 0/1:2013,249:2262:99:404,0,61198 7 100646199 rs181671450 T C 8776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.938;ClippingRankSum=0;DB;DP=535;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=51.96;MQRankSum=1.769;QD=16.41;ReadPosRankSum=-0.748;SOR=0.751 GT:AD:DP:GQ:PL 0/1:199,336:535:99:8805,0,4441 7 100646364 rs149795204 G A 287.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.143;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=48.429;MLEAC=1;MLEAF=0.5;MQ=39.6;MQRankSum=-3.606;QD=1.41;ReadPosRankSum=1.313;SOR=2.71 GT:AD:DP:GQ:PL 0/1:177,27:204:99:316,0,5380 7 100646521 rs77883124 T C 2517.77 SNP_FS_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=13.467;ClippingRankSum=0;DB;DP=444;ExcessHet=3.0103;FS=107.545;MLEAC=1;MLEAF=0.5;MQ=53.28;MQRankSum=-18.991;QD=5.67;ReadPosRankSum=-3.199;SOR=6.711 GT:AD:DP:GQ:PL 0/1:326,118:444:99:2546,0,8411 7 100646747 rs144083587 A G 10523.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=13.22;ClippingRankSum=0;DB;DP=728;ExcessHet=3.0103;FS=17.104;MLEAC=1;MLEAF=0.5;MQ=43.84;MQRankSum=-23.898;QD=14.46;ReadPosRankSum=-7.642;SOR=1.601 GT:AD:DP:GQ:PL 0/1:317,411:728:99:10552,0,7051 7 100646824 rs201628729 C T 7428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.939;ClippingRankSum=0;DB;DP=1450;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.5;MQ=41.05;MQRankSum=-11.319;QD=5.12;ReadPosRankSum=1.453;SOR=0.864 GT:AD:DP:GQ:PL 0/1:999,451:1450:99:7457,0,22083 7 100647511 rs78837976 C T 59.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.76;MQRankSum=-0.524;QD=11.95;ReadPosRankSum=-0.524;SOR=1.022 GT:AD:DP:GQ:PL 0/1:2,3:5:62:88,0,62 7 100647539 rs79635145 C T 163.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=-0;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.91;MQRankSum=-1.876;QD=14.89;ReadPosRankSum=-0;SOR=0.551 GT:AD:DP:GQ:PGT:PID:PL 0/1:6,5:11:99:0|1:100647539_C_T:192,0,314 7 100647548 rs73402837 G C 163.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.087;ClippingRankSum=-0;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.91;MQRankSum=-1.876;QD=14.89;ReadPosRankSum=-0;SOR=0.551 GT:AD:DP:GQ:PGT:PID:PL 0/1:6,5:11:99:0|1:100647539_C_T:192,0,314 7 100647565 rs74373577 C T 229.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.623;ClippingRankSum=-0;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.59;MQRankSum=-1.664;QD=16.41;ReadPosRankSum=-0.31;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,7:14:99:0|1:100647539_C_T:258,0,346 7 100647594 rs111391555 A C 475.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.11;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.73;MQRankSum=-2.162;QD=17.62;ReadPosRankSum=-0.292;SOR=0.627 GT:AD:DP:GQ:PGT:PID:PL 0/1:14,13:27:99:0|1:100647594_A_C:504,0,611 7 100647611 rs113623897 G C 667.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.605;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.68;MQRankSum=-1.616;QD=19.08;ReadPosRankSum=-1.077;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,19:35:99:0|1:100647594_A_C:696,0,658 7 100647638 rs12534950 C T 922.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.645;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.1;MQRankSum=-0.409;QD=17.41;ReadPosRankSum=-0.895;SOR=1.077 GT:AD:DP:GQ:PL 0/1:22,31:53:99:951,0,775 7 100647875 rs11766048 C A 4908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.685;ClippingRankSum=0;DB;DP=460;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-2.079;QD=10.79;ReadPosRankSum=-0.068;SOR=0.863 GT:AD:DP:GQ:PL 0/1:245,210:457:99:4937,0,5872 7 100648029 rs10953315 G A 2963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.69;SOR=0.713 GT:AD:DP:GQ:PL 0/1:138,129:267:99:2992,0,3562 7 100675376 rs10229731 A C 2906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.002;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.585;SOR=0.658 GT:AD:DP:GQ:PL 0/1:120,113:233:99:2935,0,2984 7 100675512 rs10259584 G A 3226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.23;SOR=0.666 GT:AD:DP:GQ:PL 0/1:142,134:276:99:3255,0,3700 7 100676409 rs34834039 C T 5013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0;DB;DP=420;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=1.308;SOR=0.797 GT:AD:DP:GQ:PL 0/1:215,204:419:99:5042,0,5640 7 100677502 rs10267904 G A 7969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.383;ClippingRankSum=0;DB;DP=650;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=-6.464;QD=12.3;ReadPosRankSum=3.303;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:416,232:648:99:0|1:100677502_G_A:7998,0,15657 7 100677523 rs10238201 A C 8061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.43;ClippingRankSum=0;DB;DP=645;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=58.91;MQRankSum=-7.905;QD=12.54;ReadPosRankSum=1.966;SOR=0.65 GT:AD:DP:GQ:PGT:PID:PL 0/1:421,222:643:99:0|1:100677502_G_A:8090,0,17222 7 100677526 rs10238202 A C 7934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.74;ClippingRankSum=0;DB;DP=645;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=58.87;MQRankSum=-7.845;QD=12.34;ReadPosRankSum=1.788;SOR=0.616 GT:AD:DP:GQ:PGT:PID:PL 0/1:423,220:643:99:0|1:100677502_G_A:7963,0,17446 7 100677556 rs4373459 A C 6746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.622;ClippingRankSum=0;DB;DP=640;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.04;MQRankSum=-4.663;QD=10.59;ReadPosRankSum=-1.386;SOR=0.644 GT:AD:DP:GQ:PGT:PID:PL 0/1:433,204:637:99:0|1:100677502_G_A:6775,0,17015 7 100677586 rs189731103 A G 6192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.014;ClippingRankSum=0;DB;DP=634;ExcessHet=3.0103;FS=2.658;MLEAC=1;MLEAF=0.5;MQ=57.51;MQRankSum=-7.331;QD=9.78;ReadPosRankSum=4.002;SOR=0.638 GT:AD:DP:GQ:PGT:PID:PL 0/1:433,200:633:99:0|1:100677586_A_G:6221,0,17167 7 100677625 rs115078078 G A 5652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.634;ClippingRankSum=0;DB;DP=601;ExcessHet=3.0103;FS=4.698;MLEAC=1;MLEAF=0.5;MQ=57.41;MQRankSum=-9.657;QD=9.42;ReadPosRankSum=0.512;SOR=0.827 GT:AD:DP:GQ:PGT:PID:PL 0/1:435,165:600:99:0|1:100677586_A_G:5681,0,18054 7 100677630 rs78990442 C T 5641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.128;ClippingRankSum=0;DB;DP=584;ExcessHet=3.0103;FS=6.91;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-10.622;QD=9.68;ReadPosRankSum=-0.274;SOR=0.876 GT:AD:DP:GQ:PGT:PID:PL 0/1:425,158:583:99:0|1:100677586_A_G:5670,0,18225 7 100677645 rs114262718 C A 5073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.139;ClippingRankSum=0;DB;DP=600;ExcessHet=3.0103;FS=6.105;MLEAC=1;MLEAF=0.5;MQ=57.66;MQRankSum=-11.623;QD=8.48;ReadPosRankSum=-1.612;SOR=0.798 GT:AD:DP:GQ:PGT:PID:PL 0/1:452,146:598:99:0|1:100677586_A_G:5102,0,17957 7 100677704 rs78330257 C T 3295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0;DB;DP=672;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-7.148;QD=4.91;ReadPosRankSum=-1.022;SOR=0.67 GT:AD:DP:GQ:PGT:PID:PL 0/1:553,118:671:99:0|1:100677586_A_G:3324,0,23250 7 100677714 rs79432420 C T 3447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.517;ClippingRankSum=0;DB;DP=692;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.46;MQRankSum=-6.469;QD=4.99;ReadPosRankSum=-1.548;SOR=0.715 GT:AD:DP:GQ:PGT:PID:PL 0/1:561,130:691:99:0|1:100677586_A_G:3476,0,22870 7 100677944 rs10264727 T C 13654.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.79;ClippingRankSum=0;DB;DP=925;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.89;MQRankSum=-10.608;QD=14.79;ReadPosRankSum=0.927;SOR=0.68 GT:AD:DP:GQ:PL 0/1:461,462:923:99:13683,0,13704 7 100677988 rs11769696 T A 4667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.272;ClippingRankSum=0;DB;DP=937;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=58.32;MQRankSum=7.1;QD=4.99;ReadPosRankSum=-0.414;SOR=0.734 GT:AD:DP:GQ:PL 0/1:694,242:936:99:4696,0,23836 7 100677995 rs149287079 A G 4170.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0;DB;DP=912;ExcessHet=3.0103;FS=7.18;MLEAC=1;MLEAF=0.5;MQ=58.25;MQRankSum=-19.703;QD=4.58;ReadPosRankSum=3.405;SOR=1.063 GT:AD:DP:GQ:PGT:PID:PL 0/1:743,168:911:99:0|1:100677995_A_G:4199,0,30253 7 100678029 rs142558659 G C 2933.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.811;ClippingRankSum=0;DB;DP=910;ExcessHet=3.0103;FS=6.706;MLEAC=1;MLEAF=0.5;MQ=58.61;MQRankSum=-24.648;QD=3.23;ReadPosRankSum=1.022;SOR=1.361 GT:AD:DP:GQ:PGT:PID:PL 0/1:782,127:909:99:0|1:100677995_A_G:2962,0,33153 7 100678032 rs147173571 T C 2785.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.899;ClippingRankSum=0;DB;DP=891;ExcessHet=3.0103;FS=8.549;MLEAC=1;MLEAF=0.5;MQ=58.67;MQRankSum=-24.96;QD=3.13;ReadPosRankSum=0.54;SOR=1.518 GT:AD:DP:GQ:PGT:PID:PL 0/1:769,121:890:99:0|1:100677995_A_G:2814,0,33009 7 100678063 . C A 783.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DP=923;ExcessHet=3.0103;FS=15.206;MLEAC=1;MLEAF=0.5;MQ=58.66;MQRankSum=-19.065;QD=0.85;ReadPosRankSum=-4.132;SOR=2.391 GT:AD:DP:GQ:PGT:PID:PL 0/1:845,77:922:99:0|1:100677995_A_G:812,0,35867 7 100678086 rs4729647 T C 25568.8 PASS AC=2;AF=1;AN=2;DB;DP=876;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.37;QD=30.33;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,843:875:99:25597,2479,0 7 100678372 rs11769823 T G 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.963;ClippingRankSum=0;DB;DP=507;ExcessHet=3.0103;FS=13.749;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0.595;QD=3.05;ReadPosRankSum=0.902;SOR=1.527 GT:AD:DP:GQ:PGT:PID:PL 0/1:430,75:505:99:0|1:100678372_T_G:1570,0,19254 7 100678405 rs4729648 T C 998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.158;ClippingRankSum=0;DB;DP=499;ExcessHet=3.0103;FS=9.445;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.725;QD=2.01;ReadPosRankSum=-0.712;SOR=1.636 GT:AD:DP:GQ:PGT:PID:PL 0/1:441,56:497:99:0|1:100678372_T_G:1027,0,22612 7 100678407 rs4729649 G A 959.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.54;ClippingRankSum=0;DB;DP=496;ExcessHet=3.0103;FS=9.941;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.763;QD=1.94;ReadPosRankSum=-0.548;SOR=1.69 GT:AD:DP:GQ:PGT:PID:PL 0/1:440,54:494:99:0|1:100678372_T_G:988,0,22746 7 100678417 rs138486268 A C 740.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.529;ClippingRankSum=0;DB;DP=494;ExcessHet=3.0103;FS=8.238;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.883;QD=1.51;ReadPosRankSum=-0.993;SOR=1.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:443,49:492:99:0|1:100678372_T_G:769,0,23268 7 100678418 rs149183485 A C 743.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.759;ClippingRankSum=0;DB;DP=495;ExcessHet=3.0103;FS=8.152;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.886;QD=1.51;ReadPosRankSum=-1.129;SOR=1.74 GT:AD:DP:GQ:PGT:PID:PL 0/1:444,49:493:99:0|1:100678372_T_G:772,0,23226 7 100678421 rs10265276 T A 7666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DB;DP=486;ExcessHet=3.0103;FS=7.061;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0.213;QD=15.84;ReadPosRankSum=0.421;SOR=0.846 GT:AD:DP:GQ:PL 0/1:207,277:484:99:7695,0,4815 7 100678426 rs4729650 C T 569.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.874;ClippingRankSum=0;DB;DP=482;ExcessHet=3.0103;FS=6.516;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.934;QD=1.19;ReadPosRankSum=-2.057;SOR=1.566 GT:AD:DP:GQ:PGT:PID:PL 0/1:434,46:480:99:0|1:100678372_T_G:598,0,22843 7 100678433 rs4729651 A T 317.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.24;ClippingRankSum=0;DB;DP=473;ExcessHet=3.0103;FS=7.048;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-2.097;QD=0.67;ReadPosRankSum=-1.634;SOR=1.558 GT:AD:DP:GQ:PGT:PID:PL 0/1:431,40:471:99:0|1:100678372_T_G:346,0,22853 7 100678434 rs4729652 C A 390.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=477;ExcessHet=3.0103;FS=7.048;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-2.042;QD=0.82;ReadPosRankSum=-1.278;SOR=1.519 GT:AD:DP:GQ:PL 0/1:433,42:475:99:419,0,17068 7 100678442 rs4729653 C G 280.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.223;ClippingRankSum=0;DB;DP=473;ExcessHet=3.0103;FS=5.464;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-2.169;QD=0.6;ReadPosRankSum=-1.851;SOR=1.327 GT:AD:DP:GQ:PGT:PID:PL 0/1:433,38:471:99:0|1:100678372_T_G:309,0,22426 7 100678740 rs4269454 T C 5131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.727;ClippingRankSum=0;DB;DP=456;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-1.477;QD=11.35;ReadPosRankSum=-1.22;SOR=0.822 GT:AD:DP:GQ:PL 0/1:236,216:452:99:5160,0,6159 7 100678820 rs4367469 T C 5241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0;DB;DP=467;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=-1.995;QD=11.3;ReadPosRankSum=-1.263;SOR=0.738 GT:AD:DP:GQ:PL 0/1:241,223:464:99:5270,0,5957 7 100679136 rs7780935 T C 4424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.402;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=7.416;MLEAC=1;MLEAF=0.5;MQ=56.77;MQRankSum=-0.94;QD=11.49;ReadPosRankSum=0.065;SOR=0.445 GT:AD:DP:GQ:PL 0/1:211,174:385:99:4453,0,5302 7 100679752 rs4992072 T C 2375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.287;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=18.089;MLEAC=1;MLEAF=0.5;MQ=57.78;MQRankSum=-5.155;QD=6.29;ReadPosRankSum=3.926;SOR=0.961 GT:AD:DP:GQ:PGT:PID:PL 0/1:300,78:378:99:0|1:100679752_T_C:2404,0,12994 7 100679754 rs4992073 C G 2375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.777;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=16.333;MLEAC=1;MLEAF=0.5;MQ=57.83;MQRankSum=-5.143;QD=6.25;ReadPosRankSum=4.253;SOR=0.865 GT:AD:DP:GQ:PGT:PID:PL 0/1:300,80:380:99:0|1:100679752_T_C:2404,0,12994 7 100679760 rs73168394 G A 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.045;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=25.06;MLEAC=1;MLEAF=0.5;MQ=57.86;MQRankSum=-6.023;QD=3.15;ReadPosRankSum=-6.089;SOR=1.879 GT:AD:DP:GQ:PL 0/1:292,62:354:99:1144,0,12935 7 100679809 rs4992074 C T 4048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=8.152;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-5.686;QD=10.43;ReadPosRankSum=-0.762;SOR=0.976 GT:AD:DP:GQ:PL 0/1:217,171:388:99:4077,0,5770 7 100680939 rs36120435 C A 2859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.796;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0.924;QD=11.35;ReadPosRankSum=2.509;SOR=0.791 GT:AD:DP:GQ:PL 0/1:137,115:252:99:2888,0,3832 7 100680983 rs28593004 G A 2968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.5;MQ=58.49;MQRankSum=-7.19;QD=10.45;ReadPosRankSum=0.495;SOR=0.597 GT:AD:DP:GQ:PL 0/1:164,120:284:99:2997,0,4510 7 100681762 rs10953316 A G 3418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.859;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0;QD=13.62;ReadPosRankSum=0.611;SOR=0.562 GT:AD:DP:GQ:PL 0/1:126,125:251:99:3447,0,3331 7 100682275 rs4386914 A G 5403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.509;ClippingRankSum=0;DB;DP=448;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=59.46;MQRankSum=-3.688;QD=12.12;ReadPosRankSum=-0.109;SOR=0.695 GT:AD:DP:GQ:PL 0/1:222,224:446:99:5432,0,5158 7 100683036 rs78879527 T C 2478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.443;ClippingRankSum=0;DB;DP=431;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=-8.764;QD=5.76;ReadPosRankSum=-1.474;SOR=0.968 GT:AD:DP:GQ:PGT:PID:PL 0/1:338,92:430:99:0|1:100683036_T_C:2507,0,21816 7 100683053 rs200821451 A G 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.199;ClippingRankSum=0;DB;DP=412;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-9.75;QD=4.62;ReadPosRankSum=-1.941;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:340,71:411:99:0|1:100683036_T_C:1929,0,22570 7 100683067 rs112360991 C T 1364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=1.13;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=-10.594;QD=3.56;ReadPosRankSum=-3.847;SOR=0.815 GT:AD:DP:GQ:PGT:PID:PL 0/1:328,55:383:99:0|1:100683036_T_C:1393,0,21793 7 100683087 . T G 371.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.793;ClippingRankSum=0;DP=364;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-13.531;QD=1.02;ReadPosRankSum=-5.025;SOR=0.898 GT:AD:DP:GQ:PGT:PID:PL 0/1:330,34:364:99:0|1:100683036_T_C:400,0,20721 7 100684550 rs35090328 A G 5567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0;DB;DP=515;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.82;MQRankSum=-2.825;QD=10.83;ReadPosRankSum=-2.426;SOR=0.72 GT:AD:DP:GQ:PL 0/1:278,236:514:99:5596,0,7359 7 100684593 rs35988443 G A 5718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.251;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-4.574;QD=11.41;ReadPosRankSum=-1.112;SOR=0.66 GT:AD:DP:GQ:PL 0/1:268,233:501:99:5747,0,7129 7 100695138 rs73168398 G A 1829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.709;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.755;SOR=0.643 GT:AD:DP:GQ:PL 0/1:88,77:165:99:1858,0,2050 7 100731505 rs4524722 C G 3172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.817;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.828;SOR=0.8 GT:AD:DP:GQ:PL 0/1:132,126:258:99:3201,0,3165 7 100731829 rs6948536 T C 2712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.014;SOR=0.671 GT:AD:DP:GQ:PL 0/1:103,108:211:99:2741,0,2689 7 100732321 rs11760747 C T 3410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.722;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=0.532;SOR=0.663 GT:AD:DP:GQ:PL 0/1:135,153:288:99:3439,0,3326 7 100771717 rs6092 G A 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=1.883;SOR=0.862 GT:AD:DP:GQ:PL 0/1:131,98:229:99:2275,0,3301 7 100818101 rs733965 A G 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.446;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=3.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-1.651;SOR=0.461 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1972,0,2190 7 100839401 rs3735338 G A 2892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.948;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.248;SOR=0.752 GT:AD:DP:GQ:PL 0/1:107,124:231:99:2921,0,2690 7 100850048 rs4729671 A G 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.451;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.805;SOR=0.848 GT:AD:DP:GQ:PL 0/1:89,85:174:99:2056,0,1938 7 100855001 rs2301903 C T 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.328;SOR=0.547 GT:AD:DP:GQ:PL 0/1:75,79:156:99:1838,0,1933 7 100875772 rs1047319 T G 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.992;SOR=0.428 GT:AD:DP:GQ:PL 0/1:44,45:89:99:1188,0,1152 7 101006376 rs4989267 C T 3514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.4;ReadPosRankSum=0.747;SOR=0.615 GT:AD:DP:GQ:PGT:PID:PL 0/1:109,93:202:99:0|1:101006376_C_T:3543,0,5750 7 101006382 rs4989266 C T 3566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.31;ReadPosRankSum=0.568;SOR=0.622 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,94:206:99:0|1:101006376_C_T:3595,0,5828 7 101006488 rs4989265 C G 772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.288;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=9.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=0.192;SOR=1.684 GT:AD:DP:GQ:PL 0/1:63,34:97:99:801,0,1438 7 101194424 rs17135626 C T 1103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=12.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.469;SOR=1.111 GT:AD:DP:GQ:PL 0/1:64,47:111:99:1132,0,1656 7 101200669 rs36008849 A AG 6156.73 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.59;SOR=1.246 GT:AD:DP:GQ:PL 1/1:0,173:173:99:6194,524,0 7 101200765 rs17471501 C T 2649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=4.754;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-1.095;QD=12.44;ReadPosRankSum=-0.288;SOR=0.541 GT:AD:DP:GQ:PL 0/1:96,117:213:99:2678,0,2274 7 101267435 rs876825 T C 1592.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1621,165,0 7 101559513 rs56091128 G A 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.789;SOR=0.854 GT:AD:DP:GQ:PL 0/1:32,40:72:99:906,0,689 7 101892121 rs410825 G A 5687.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.571 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5716,551,0 7 101892229 rs149171097 C A 3578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.007;SOR=0.662 GT:AD:DP:GQ:PL 0/1:138,142:280:99:3607,0,3422 7 101892328 rs368214 C T 9613.77 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,306:306:99:9642,919,0 7 101916647 rs813000 A G 2429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.279;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=1.769;SOR=0.722 GT:AD:DP:GQ:PL 0/1:96,100:196:99:2458,0,2258 7 101917521 rs803064 G A 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.286;SOR=0.922 GT:AD:DP:GQ:PL 0/1:71,75:146:99:1672,0,1757 7 101923315 rs57030737 T TC 1526.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.803;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.91;ReadPosRankSum=-1.044;SOR=0.876 GT:AD:DP:GQ:PL 0/1:26,47:73:99:1564,0,689 7 101988870 . G A 310.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.595;ClippingRankSum=0;DP=567;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.52;MQRankSum=0.768;QD=0.55;ReadPosRankSum=1.545;SOR=0.616 GT:AD:DP:GQ:PL 0/1:490,74:564:99:339,0,12497 7 102038153 . CTGTGTG C,CTG 3309.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.584;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=40.86;ReadPosRankSum=1.734;SOR=0.274 GT:AD:DP:GQ:PL 1/2:1,10,70:86:99:3347,2294,2188,349,0,136 7 102087163 rs34647773 C T 3267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.778;SOR=0.73 GT:AD:DP:GQ:PL 0/1:135,133:268:99:3296,0,3432 7 102112980 rs3800987 G A 12349.8 PASS AC=2;AF=1;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,411:411:99:12378,1233,0 7 102114631 rs62483808 A G 5125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.33;MQRankSum=-2.354;QD=13.28;ReadPosRankSum=0.906;SOR=0.697 GT:AD:DP:GQ:PL 0/1:186,200:386:99:5154,0,4719 7 102114989 rs145000593 T TC 629.73 PASS AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.36;QD=34.99;SOR=5.892 GT:AD:DP:GQ:PL 1/1:0,18:18:54:667,54,0 7 102119322 rs1131325 T C 9913.77 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.59;QD=30.69;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,323:323:99:9942,969,0 7 102147148 . T C 881.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.5;MQ=30.42;MQRankSum=-1.194;QD=8.16;ReadPosRankSum=-1.22;SOR=1.007 GT:AD:DP:GQ:PL 0/1:61,47:108:99:910,0,1315 7 102147246 rs150864914 T C 1321.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.48;QD=28.73;SOR=4.317 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1350,138,0 7 102147284 . C T 74.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.03;ClippingRankSum=0;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.4;MQRankSum=-0.428;QD=2.77;ReadPosRankSum=0.337;SOR=0.368 GT:AD:DP:GQ:PL 0/1:21,6:27:99:103,0,559 7 102158166 . G C 83.28 SNP_MQ_filter AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.48;QD=27.76;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:111,9,0 7 102210320 rs146014961 G C 6280.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.8;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=2.71;MLEAC=1;MLEAF=0.5;MQ=39.15;MQRankSum=-0.86;QD=18.8;ReadPosRankSum=0.605;SOR=0.537 GT:AD:DP:GQ:PL 0/1:89,245:334:99:6309,0,1730 7 102230602 . G A 115.98 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.76;MQRankSum=-0.157;QD=14.5;ReadPosRankSum=1.534;SOR=2.833 GT:AD:DP:GQ:PL 1/1:1,7:8:13:144,13,0 7 102240301 rs370047247 A T 32.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.86;MQRankSum=0.366;QD=4.68;ReadPosRankSum=-0;SOR=0.223 GT:AD:DP:GQ:PL 0/1:5,2:7:61:61,0,174 7 102246311 rs200132914 T C 589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.23;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=7.204;MLEAC=1;MLEAF=0.5;MQ=41.44;MQRankSum=-6.283;QD=2.22;ReadPosRankSum=-0.339;SOR=1.106 GT:AD:DP:GQ:PL 0/1:221,45:266:99:618,0,6239 7 102246394 rs142342278 A G 2827.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.142;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=70.916;MLEAC=1;MLEAF=0.5;MQ=49.4;MQRankSum=-16.394;QD=7.64;ReadPosRankSum=-1.147;SOR=2.38 GT:AD:DP:GQ:PL 0/1:243,127:370:99:2856,0,5479 7 102246447 rs200418348 C T 762.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.418;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.5;MQ=45.16;MQRankSum=-6.671;QD=1.92;ReadPosRankSum=-0.6;SOR=0.869 GT:AD:DP:GQ:PL 0/1:326,71:397:99:791,0,8994 7 102279601 . G T 1854.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.489;ClippingRankSum=0;DP=192;ExcessHet=3.0103;FS=122.012;MLEAC=1;MLEAF=0.5;MQ=39.51;MQRankSum=-9.177;QD=9.66;ReadPosRankSum=-2.72;SOR=7.933 GT:AD:DP:GQ:PL 0/1:116,76:192:99:1883,0,2776 7 102294074 . T C 136.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.188;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.92;MQRankSum=-5.592;QD=2.85;ReadPosRankSum=0.231;SOR=0.095 GT:AD:DP:GQ:PL 0/1:37,11:48:99:165,0,969 7 102309418 rs74556368 C A 59.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.46;QD=19.76;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:87,9,0 7 102389833 rs28695887 G C 6636.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.59;QD=30.73;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6665,648,0 7 102398410 rs199537059 C CT 491.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.928;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.7;MQRankSum=-6.208;QD=10.69;ReadPosRankSum=-0.087;SOR=0.655 GT:AD:DP:GQ:PL 0/1:21,25:55:99:529,0,411 7 102427889 rs116082009 C T 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.614;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.5;MQ=50.1;MQRankSum=-0.165;QD=13.01;ReadPosRankSum=-0.683;SOR=0.711 GT:AD:DP:GQ:PL 0/1:57,80:137:99:1811,0,1342 7 102462636 rs10279449 T C 1407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.107;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-0.194;SOR=0.737 GT:AD:DP:GQ:PL 0/1:88,66:154:99:1436,0,2051 7 102574999 rs3832497 TGAA T 5873.73 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=44.5;SOR=1.205 GT:AD:DP:GQ:PL 1/1:0,132:132:99:5911,398,0 7 102668001 rs7805950 A C 1823.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1852,192,0 7 102738862 rs14029 T C 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=45.15;MQRankSum=-1.955;QD=10.69;ReadPosRankSum=0.409;SOR=0.808 GT:AD:DP:GQ:PL 0/1:62,63:125:99:1364,0,1345 7 102743893 rs3181009 C T 3422.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3451,363,0 7 102948040 rs11489600 T C 1604.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1633,159,0 7 103007949 rs4520097 A C 4788.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.045;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;MQRankSum=0;QD=29.38;ReadPosRankSum=-0.558;SOR=0.265 GT:AD:DP:GQ:PL 1/1:1,162:163:99:4817,478,0 7 103138517 rs2711885 C G 3597.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3626,346,0 7 103202406 rs34635569 CA C 472.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=6.678;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.088;QD=8.44;ReadPosRankSum=-0.088;SOR=0.244 GT:AD:DP:GQ:PL 0/1:27,29:75:99:510,0,504 7 103292224 rs2072403 T C 1766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.217;SOR=0.549 GT:AD:DP:GQ:PL 0/1:76,76:152:99:1795,0,1825 7 103389954 rs607755 A G 561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.03;ReadPosRankSum=0.03;SOR=0.748 GT:AD:DP:GQ:PL 0/1:44,26:70:99:590,0,1090 7 103629803 . T TGCCGCC 3264.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0;DP=226;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.809;QD=20.53;ReadPosRankSum=-0.856;SOR=0.795 GT:AD:DP:GQ:PL 0/1:75,84:169:99:3302,0,3702 7 104800939 rs4730071 C T 2314.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2343,246,0 7 105122891 rs57080279 TA T 488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.639;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=10.189;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.371;SOR=2.05 GT:AD:DP:GQ:PL 0/1:23,28:63:99:517,0,449 7 105177041 rs11556986 A T 1070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-1.838;SOR=1.054 GT:AD:DP:GQ:PL 0/1:54,46:100:99:1099,0,1315 7 105254801 rs150182467 AGAG A 771.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=2.07;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=2.512;QD=2.55;ReadPosRankSum=0.404;SOR=0.883 GT:AD:DP:GQ:PL 0/1:263,40:305:99:809,0,11428 7 105621512 rs193795 G T 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.677;SOR=0.669 GT:AD:DP:GQ:PL 0/1:52,78:130:99:1823,0,1241 7 105658451 rs6967330 G A 4538.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.91;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,130:130:99:1|1:105658451_G_A:4567,393,0 7 105658460 rs73195662 C G 1384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.378;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-0.419;SOR=1.057 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,55:132:99:0|1:105658451_G_A:1413,0,1777 7 105662690 rs10258293 T C 5125.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5154,516,0 7 105672826 rs75850640 T G 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.357;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=6.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.147;SOR=1.284 GT:AD:DP:GQ:PL 0/1:61,56:117:99:1432,0,1428 7 105739732 rs176492 C T 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.41;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-0.553;SOR=0.662 GT:AD:DP:GQ:PL 0/1:68,53:121:99:1119,0,1594 7 105903904 rs2302559 T C 3225.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.57;QD=32.26;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3254,299,0 7 106508978 rs849389 A G 8732.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.78;SOR=0.745 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,195:195:99:1|1:106508978_A_G:8761,587,0 7 106508987 rs849390 T C 9064.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.44;SOR=0.861 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,204:204:99:1|1:106508978_A_G:9093,623,0 7 106513011 rs1129293 C T 2120.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2149,231,0 7 106799997 rs257376 G A 3922.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3951,411,0 7 106826381 rs7794598 C T 1088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=2.209;SOR=0.982 GT:AD:DP:GQ:PL 0/1:38,47:85:99:1117,0,866 7 106888946 . TA T 92.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.396;QD=1.97;ReadPosRankSum=1.115;SOR=0.532 GT:AD:DP:GQ:PL 0/1:35,12:54:99:130,0,868 7 106897237 rs17349904 A C 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.89;SOR=0.573 GT:AD:DP:GQ:PL 0/1:43,40:83:99:924,0,952 7 107002504 rs34087251 T C 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.552;SOR=0.97 GT:AD:DP:GQ:PL 0/1:43,43:86:99:917,0,905 7 107002573 rs12536603 T C 735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.57;SOR=0.802 GT:AD:DP:GQ:PL 0/1:38,33:71:99:764,0,911 7 107002806 rs2269970 A G 3001.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3030,297,0 7 107188719 rs2066735 G T 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-1.331;SOR=0.506 GT:AD:DP:GQ:PL 0/1:46,45:91:99:1024,0,1142 7 107198405 rs2520272 A T 2381.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.19;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2410,222,0 7 107217020 rs6957510 G A 1593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.383;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=-0.702;SOR=0.84 GT:AD:DP:GQ:PL 0/1:54,59:113:99:1622,0,1309 7 107414419 rs41669 A G 4513.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4542,426,0 7 107545799 rs10263341 T C 1134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-1.572;SOR=0.319 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1163,0,964 7 107559722 rs8721 A T 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.413;SOR=0.648 GT:AD:DP:GQ:PL 0/1:32,31:63:99:807,0,808 7 107564539 rs3213673 G A 424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.335;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.732;SOR=1.096 GT:AD:DP:GQ:PGT:PID:PL 0/1:31,13:44:99:0|1:107564539_G_A:453,0,1588 7 107564542 rs3213674 G T 430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.196;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 0/1:27,13:40:99:0|1:107564539_G_A:459,0,1545 7 107569517 rs1131398 A G 1300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.898;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-3.069;SOR=0.514 GT:AD:DP:GQ:PL 0/1:70,56:126:99:1329,0,1682 7 107575866 rs11545309 G A 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.04;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=5.384;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=2.131;QD=15.03;ReadPosRankSum=1.087;SOR=0.679 GT:AD:DP:GQ:PL 0/1:55,76:131:99:1997,0,1338 7 107593989 rs20556 T C 2646.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=2.084 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2675,246,0 7 107603431 rs2230156 A C 1635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-1.013;SOR=0.713 GT:AD:DP:GQ:PL 0/1:85,71:156:99:1664,0,2072 7 107671407 rs2528693 C G 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.88;SOR=0.678 GT:AD:DP:GQ:PL 0/1:56,67:123:99:1599,0,1280 7 107677984 rs1627354 G A 1261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.57;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.238;SOR=0.693 GT:AD:DP:GQ:PL 0/1:58,58:116:99:1290,0,1435 7 107689844 rs10260756 G T 327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.6;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.99;ReadPosRankSum=-0.485;SOR=1.027 GT:AD:DP:GQ:PL 0/1:26,15:41:99:356,0,652 7 107696289 rs17154865 C T 1638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-0.852;SOR=0.577 GT:AD:DP:GQ:PL 0/1:59,65:124:99:1667,0,1477 7 107720162 rs9690688 C A 1390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=2.282;SOR=0.943 GT:AD:DP:GQ:PL 0/1:72,63:135:99:1419,0,1699 7 107800953 rs12670313 A G 1238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.767;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=-0.871;SOR=0.465 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1267,0,1833 7 107822396 rs2142325 G A 711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.002;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=4.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-0.019;SOR=1.352 GT:AD:DP:GQ:PL 0/1:44,30:74:99:740,0,1027 7 107824678 rs6970656 A G 1147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=1.077;SOR=0.872 GT:AD:DP:GQ:PL 0/1:34,49:83:99:1176,0,740 7 107824889 rs401433 C G 1975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.737;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=0.142;SOR=0.855 GT:AD:DP:GQ:PL 0/1:72,73:145:99:2004,0,1837 7 107834613 rs6958498 G C 4278.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4307,400,0 7 107834624 rs6978315 T C 4244.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4273,398,0 7 107834734 rs404287 C T 2998.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3027,291,0 7 107838464 rs381318 G T 1979.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2008,195,0 7 108205568 . A G 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=5.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=-0.206;SOR=0.287 GT:AD:DP:GQ:PL 0/1:31,42:73:99:1144,0,877 7 108212353 rs1043615 G A 1966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.299;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-1.588;SOR=0.639 GT:AD:DP:GQ:PL 0/1:80,82:162:99:1995,0,1808 7 110762899 rs9942557 A G 1292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.107;SOR=0.651 GT:AD:DP:GQ:PL 0/1:64,58:122:99:1321,0,1578 7 111512032 rs10224326 A T 1355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.866;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=6.538;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=-2.113;QD=13.69;ReadPosRankSum=-0.674;SOR=1.316 GT:AD:DP:GQ:PL 0/1:40,59:99:99:1384,0,842 7 111512165 rs58173189 GC G 493.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.62;MQRankSum=2.452;QD=9.49;ReadPosRankSum=0.193;SOR=0.567 GT:AD:DP:GQ:PL 0/1:34,18:52:99:531,0,1190 7 111512630 rs28593141 T C 1253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.791;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=8.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-1.162;SOR=1.623 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1282,0,1008 7 112101909 rs2708609 T A 900.78 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.287;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.3;ReadPosRankSum=-1.326;SOR=1.402 GT:AD:DP:GQ:PGT:PID:PL 1/1:2,31:33:24:1|1:112101907_ATT_A:929,24,0 7 112102355 rs2253962 T G 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.581;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=0.286;SOR=0.773 GT:AD:DP:GQ:PL 0/1:34,36:70:99:1010,0,861 7 112112279 rs2074796 G A 1282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=0.42;SOR=0.817 GT:AD:DP:GQ:PL 0/1:45,53:98:99:1311,0,1070 7 112424650 rs73205167 G A 1821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=0.59;SOR=0.533 GT:AD:DP:GQ:PL 0/1:62,77:139:99:1850,0,1489 7 112724417 rs2256044 A G 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.931;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.304;SOR=0.67 GT:AD:DP:GQ:PL 0/1:69,50:119:99:1278,0,1616 7 112724525 rs1608890 A G 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.823;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=0.158;SOR=0.547 GT:AD:DP:GQ:PL 0/1:36,42:78:99:1180,0,866 7 113518502 rs2974938 A T 5613.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5642,557,0 7 113519719 rs2974944 A T 4448.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.862;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.13;ReadPosRankSum=-0.404;SOR=0.825 GT:AD:DP:GQ:PL 1/1:2,175:177:99:4477,474,0 7 113519796 rs2974942 C T 4548.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4577,460,0 7 114303491 rs34735973 A AT 467.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=1.529;QD=8.83;ReadPosRankSum=-0.992;SOR=0.813 GT:AD:DP:GQ:PL 0/1:30,23:57:99:505,0,575 7 114619598 rs2594449 C A 4360.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4389,423,0 7 115897392 rs4710 G C 1942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.419;SOR=0.616 GT:AD:DP:GQ:PL 0/1:101,83:184:99:1971,0,2552 7 116435768 rs41736 C T 4783.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4812,494,0 7 116436022 rs2023748 G A 5113.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5142,494,0 7 116436097 rs41737 G A 5091.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5120,501,0 7 116528240 rs4808 C T 467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=1.305;SOR=0.776 GT:AD:DP:GQ:PL 0/1:24,23:47:99:496,0,549 7 116557939 rs3173936 C T 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.731;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.44;ReadPosRankSum=-1.153;SOR=0.678 GT:AD:DP:GQ:PL 0/1:19,24:43:99:692,0,409 7 116811037 rs193562 T C 433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=3.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.61;ReadPosRankSum=0.436;SOR=0.654 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,20:57:99:0|1:116811037_T_C:462,0,1029 7 117176738 rs1800503 C T 489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.083;SOR=0.292 GT:AD:DP:GQ:PL 0/1:21,21:42:99:518,0,558 7 117188682 rs10229820 G T 491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.229;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-0.77;QD=17.56;ReadPosRankSum=0.665;SOR=0.197 GT:AD:DP:GQ:PL 0/1:12,16:29:99:520,0,394 7 117199533 rs213950 G A 585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=-0.115;SOR=0.701 GT:AD:DP:GQ:PL 0/1:36,28:64:99:614,0,869 7 117229537 rs213965 T A 266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.915;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.317;SOR=1.179 GT:AD:DP:GQ:PL 0/1:10,13:23:99:295,0,330 7 117876958 . G A 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.357;ClippingRankSum=0;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.743;SOR=0.698 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1694,0,1778 7 120428799 rs41623 C A 6146.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6175,615,0 7 120455774 rs116938497 T C 806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.047;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.631;SOR=0.653 GT:AD:DP:GQ:PL 0/1:40,35:75:99:835,0,909 7 120704289 rs2721375 C T 1348.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1377,144,0 7 120739962 rs199844199 GTT G,GT 2539.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.494;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.17;MQRankSum=0.265;QD=22.88;ReadPosRankSum=-0.757;SOR=1.026 GT:AD:DP:GQ:PL 1/2:3,45,63:120:99:2577,1228,1352,973,0,751 7 120740103 rs798937 G T 4517.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=29.15;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4546,463,0 7 120764477 rs1524498 G C 1254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.339;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=8.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-0.828;SOR=1.104 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1283,0,1703 7 120765954 rs798949 T C 508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=-2.009;SOR=0.582 GT:AD:DP:GQ:PL 0/1:32,28:60:99:537,0,676 7 120773954 rs61128227 A G 822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.672;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=-1.542;SOR=0.765 GT:AD:DP:GQ:PL 0/1:22,33:55:99:851,0,500 7 120776097 rs41281692 C G 341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.97;ReadPosRankSum=-0.55;SOR=0.712 GT:AD:DP:GQ:PL 0/1:31,18:49:99:370,0,870 7 120876835 rs35793694 A G 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.456;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-1.363;SOR=0.658 GT:AD:DP:GQ:PL 0/1:32,38:70:99:906,0,706 7 120911438 rs138155176 G A 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.707;SOR=0.521 GT:AD:DP:GQ:PL 0/1:53,41:94:99:964,0,1276 7 121616250 rs4629793 G A 612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.507;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.32;SOR=0.484 GT:AD:DP:GQ:PL 0/1:31,27:58:99:641,0,758 7 121653374 rs35947407 GTGA G 3461.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.526;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=8.414;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=2.364;QD=18.41;ReadPosRankSum=-0.48;SOR=0.772 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,90:188:99:0|1:121653374_GTGA_G:3499,0,3817 7 121653398 rs1147504 G A 3577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=8.068;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.469;QD=18.25;ReadPosRankSum=0.237;SOR=0.907 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,95:196:99:0|1:121653374_GTGA_G:3606,0,3836 7 121699789 rs55805372 C CT 287.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.446;QD=2.48;ReadPosRankSum=1.27;SOR=0.566 GT:AD:DP:GQ:PL 0/1:90,26:134:99:325,0,1900 7 121738926 . TA T 174.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.64;ReadPosRankSum=-1.368;SOR=0.458 GT:AD:DP:GQ:PL 0/1:18,13:41:99:212,0,275 7 121942847 rs6968786 G C 4272.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.73;SOR=1.112 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,100:100:99:1|1:121942832_G_GACA:4301,301,0 7 122033379 rs2074588 A G 2573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.534;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=1.185;SOR=0.748 GT:AD:DP:GQ:PL 0/1:89,96:185:99:2602,0,2129 7 122078414 rs2074589 T G 1962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=2.286;SOR=0.629 GT:AD:DP:GQ:PL 0/1:104,91:195:99:1991,0,2487 7 122303321 rs2251761 C T 3415.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3444,351,0 7 122635024 rs860170 C T 2927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=0.666;SOR=0.756 GT:AD:DP:GQ:PL 0/1:123,125:248:99:2956,0,2921 7 122774603 rs2470983 C A 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-2.305;SOR=0.784 GT:AD:DP:GQ:PL 0/1:38,40:78:99:924,0,873 7 123097468 rs10234745 T C 909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=0.273;SOR=0.836 GT:AD:DP:GQ:PL 0/1:57,41:98:99:938,0,1510 7 123119990 rs10500091 T C 1323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.037;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.418;SOR=0.525 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1352,0,1416 7 123152019 rs10255061 C T 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.692;SOR=0.69 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1220,0,1499 7 123152035 rs10270705 T C 1328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.413;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.208;SOR=0.82 GT:AD:DP:GQ:PL 0/1:62,57:119:99:1357,0,1514 7 123256427 rs6962756 C T 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.401;SOR=0.639 GT:AD:DP:GQ:PL 0/1:75,77:152:99:1848,0,1743 7 123264804 rs11769381 C T 1605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.019;SOR=0.757 GT:AD:DP:GQ:PL 0/1:72,62:134:99:1634,0,1966 7 123269118 rs4731112 G C 2643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.098;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=2.075;SOR=0.611 GT:AD:DP:GQ:PL 0/1:116,117:233:99:2672,0,2627 7 123301940 rs7809453 A G 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.261;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=-1.597;SOR=1.044 GT:AD:DP:GQ:PL 0/1:45,58:103:99:1469,0,1001 7 123388732 rs1054706 G A 2894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=5.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.008;SOR=0.87 GT:AD:DP:GQ:PL 0/1:112,123:235:99:2923,0,2592 7 123593633 rs34404662 G A 674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.08;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-0.231;SOR=0.54 GT:AD:DP:GQ:PL 0/1:35,31:66:99:703,0,982 7 123593764 rs34633019 T C 1230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.678;SOR=0.401 GT:AD:DP:GQ:PL 0/1:64,50:114:99:1259,0,1666 7 123595086 rs34978112 T C 914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.903;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.283;SOR=0.78 GT:AD:DP:GQ:PL 0/1:43,45:88:99:943,0,1108 7 123672456 rs72310362 CGCTGCT C 5616.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.845;ClippingRankSum=0;DB;DP=517;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=60.71;MQRankSum=5.347;QD=14.26;ReadPosRankSum=0.004;SOR=0.62 GT:AD:DP:GQ:PL 0/1:181,213:415:99:5654,0,8912 7 124387374 rs724356 A G 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=6.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.722;SOR=1.368 GT:AD:DP:GQ:PL 0/1:50,48:98:99:1202,0,1152 7 124404308 rs62638683 C A 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.045;SOR=0.564 GT:AD:DP:GQ:PL 0/1:115,104:219:99:2535,0,2916 7 124404371 rs61744942 G A 2598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.905;SOR=0.645 GT:AD:DP:GQ:PL 0/1:120,106:226:99:2627,0,3084 7 124481245 rs3815221 G A 2121.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.931 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2150,210,0 7 124486980 rs7794637 T C 1782.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.43;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1811,193,0 7 127250907 rs712700 T C 2777.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2806,278,0 7 127251188 rs712701 T G 5034.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.13;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5063,537,0 7 127253898 rs77039439 G A 1795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.24;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.483;SOR=0.76 GT:AD:DP:GQ:PL 0/1:93,83:176:99:1824,0,2302 7 127669584 rs73238074 T C 2737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=0.633;SOR=0.671 GT:AD:DP:GQ:PL 0/1:145,115:260:99:2766,0,3724 7 127669857 rs3823994 A T 2190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=-1.033;SOR=0.702 GT:AD:DP:GQ:PL 0/1:139,98:237:99:2219,0,3603 7 127721507 rs322825 T C 5900.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5929,603,0 7 127992437 rs1651945 C G 10115.8 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,312:312:99:10144,936,0 7 128034629 rs2228075 C T 1630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.376;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=7.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-3.233;SOR=1.259 GT:AD:DP:GQ:PL 0/1:75,69:144:99:1659,0,1745 7 128133984 rs2562741 G A 4615.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.92;QD=30.98;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4644,443,0 7 128140982 rs10257897 T C 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-1.446;QD=10.68;ReadPosRankSum=-1.746;SOR=0.679 GT:AD:DP:GQ:PL 0/1:58,55:113:99:1235,0,1395 7 128141865 rs1053124 T C 3252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.567;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.5;MQ=57.92;MQRankSum=-10.229;QD=10.33;ReadPosRankSum=0.141;SOR=0.743 GT:AD:DP:GQ:PL 0/1:176,139:315:99:3281,0,4313 7 128312450 rs11769769 C T 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.937;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-2.156;SOR=0.632 GT:AD:DP:GQ:PL 0/1:65,60:125:99:1467,0,1518 7 128315889 rs6971819 A T 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.161;SOR=0.894 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1206,0,1250 7 128358865 rs77362226 G T 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.995;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.577;SOR=0.607 GT:AD:DP:GQ:PL 0/1:48,40:88:99:944,0,1425 7 128394606 rs2307040 C T 943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.273;SOR=0.857 GT:AD:DP:GQ:PL 0/1:55,41:96:99:972,0,1510 7 128409225 rs1043550 A G 684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=1.788;SOR=0.551 GT:AD:DP:GQ:PL 0/1:33,30:63:99:713,0,748 7 128415195 rs1799922 T G 2107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.343;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=0.14;SOR=0.706 GT:AD:DP:GQ:PL 0/1:75,78:153:99:2136,0,1698 7 128415860 rs3807128 C T 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.702;SOR=0.682 GT:AD:DP:GQ:PL 0/1:35,40:75:99:980,0,825 7 128455767 rs4728137 C G 4465.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4494,414,0 7 128487866 rs2249128 T C 7259.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,220:220:99:7288,659,0 7 128489228 rs201957008 T C 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.909;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.88;ReadPosRankSum=1.045;SOR=0.461 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1952,0,1296 7 128531072 rs3734971 T A 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.143;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.38;ReadPosRankSum=0.184;SOR=0.574 GT:AD:DP:GQ:PL 0/1:135,108:243:99:2065,0,3381 7 128532551 rs78082728 A G 927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.152;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.67;ReadPosRankSum=-0.232;SOR=0.929 GT:AD:DP:GQ:PL 0/1:77,44:121:99:956,0,1820 7 128532980 rs7782976 T C 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=4.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-0.065;SOR=0.333 GT:AD:DP:GQ:PL 0/1:45,49:94:99:1244,0,1208 7 128533514 rs34061445 T TC 3701.73 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.25;SOR=1.222 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3739,316,0 7 128544133 rs56144153 G T 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.128;SOR=0.555 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1236,0,1360 7 128547512 rs6948542 G A 818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.521;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.007;SOR=0.804 GT:AD:DP:GQ:PL 0/1:49,31:80:99:847,0,1411 7 128548463 rs7786945 A C 934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.67;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.54;ReadPosRankSum=0.941;SOR=0.634 GT:AD:DP:GQ:PL 0/1:81,43:124:99:963,0,2008 7 128550680 rs11335250 GC G 6156.73 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=32.4;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6194,572,0 7 128587351 rs199508964 CACTCTGCAGCCGCCCACTCTGCGGCCGCCT C 5070.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.585;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=7.426;MLEAC=1;MLEAF=0.5;MQ=62.72;MQRankSum=10.093;QD=18.57;ReadPosRankSum=-1.741;SOR=0.404 GT:AD:DP:GQ:PL 0/1:132,141:273:99:5108,0,5211 7 128607384 rs8043 G A 960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.624;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.348;SOR=0.624 GT:AD:DP:GQ:PL 0/1:54,44:98:99:989,0,1100 7 128641226 rs2305324 G C 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=0.136;SOR=0.713 GT:AD:DP:GQ:PL 0/1:102,72:174:99:1525,0,2552 7 128846328 rs2228617 G C 5091.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5120,503,0 7 129297332 rs1882094 T G 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.005;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.135;SOR=0.634 GT:AD:DP:GQ:PL 0/1:64,46:110:99:1215,0,1604 7 129663496 rs11556924 C T 5422.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5451,575,0 7 129664312 rs1464890 T C 6584.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6613,636,0 7 129710524 rs1062154 G C 2020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=13.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=0.08;SOR=0.244 GT:AD:DP:GQ:PL 0/1:93,84:177:99:2049,0,2697 7 129825215 rs4731668 T C 816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.463;SOR=0.814 GT:AD:DP:GQ:PL 0/1:43,35:78:99:845,0,1092 7 129841939 rs11375003 G GA 1413.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.137;SOR=0.551 GT:AD:DP:GQ:PL 0/1:66,64:136:99:1451,0,1263 7 129855837 rs4728190 C T 2074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.97;SOR=0.635 GT:AD:DP:GQ:PL 0/1:92,86:178:99:2103,0,2424 7 129916515 rs17590 T C 683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.405;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.84;ReadPosRankSum=-0.345;SOR=0.713 GT:AD:DP:GQ:PL 0/1:82,35:117:99:712,0,2011 7 129945768 rs113946505 T A 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.084;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.08;ReadPosRankSum=2.15;SOR=0.85 GT:AD:DP:GQ:PL 0/1:70,43:113:99:941,0,1577 7 129948248 rs113676595 G A 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.382;SOR=0.567 GT:AD:DP:GQ:PL 0/1:42,41:83:99:878,0,952 7 129962360 rs1569133 A G 3844.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3873,381,0 7 129986338 rs6973851 C T 1313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.875;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.002;SOR=1.23 GT:AD:DP:GQ:PL 0/1:62,49:111:99:1342,0,1503 7 129989878 rs7808823 T C 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-2.492;SOR=0.597 GT:AD:DP:GQ:PL 0/1:86,71:157:99:1580,0,2055 7 130002317 rs1544705 T C 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.729;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=0.373;SOR=0.801 GT:AD:DP:GQ:PL 0/1:76,63:139:99:1404,0,1694 7 130007381 rs11761888 T C 5391.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.48;SOR=1.353 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,130:130:99:1|1:130007381_T_C:5420,391,0 7 130007388 rs17854248 G T 5142.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.33;SOR=1.718 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,111:111:99:1|1:130007381_T_C:5171,361,0 7 130008285 rs17164867 T C 4428.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4457,426,0 7 130021488 rs1126899 G C 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.157;SOR=0.521 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1849,0,2030 7 130022041 rs968404 C T 598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.783;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-1.306;SOR=0.578 GT:AD:DP:GQ:PL 0/1:41,34:75:99:627,0,918 7 130080812 rs2287371 T G 3940.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3969,399,0 7 130297119 rs34699820 GA G 1379.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.045;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=20.29;ReadPosRankSum=0.974;SOR=0.53 GT:AD:DP:GQ:PL 1/1:6,62:71:62:1417,62,0 7 130418525 rs76603546 G A 2871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.246;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.883;SOR=0.673 GT:AD:DP:GQ:PL 0/1:102,114:216:99:2900,0,2594 7 130418689 rs111400400 A G 2509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.176;SOR=0.786 GT:AD:DP:GQ:PL 0/1:107,110:217:99:2538,0,2511 7 130418720 rs111359117 A C 8016.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.18;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,210:210:99:8045,631,0 7 130418721 rs184537657 T G 3780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.09;ReadPosRankSum=0.721;SOR=0.634 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,106:209:99:0|1:130418721_T_G:3809,0,3779 7 130418744 rs111731678 T A 3727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.31;ReadPosRankSum=-0.344;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,99:193:99:0|1:130418721_T_G:3756,0,3682 7 131155588 rs1733861 G T 551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=-1.077;SOR=0.928 GT:AD:DP:GQ:PL 0/1:34,26:60:99:580,0,852 7 131195712 rs12670788 G A 2238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.501;SOR=0.739 GT:AD:DP:GQ:PL 0/1:88,88:176:99:2267,0,2276 7 131195959 rs3735035 C T 1376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.446;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=5.164;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=1.312;SOR=1.107 GT:AD:DP:GQ:PL 0/1:81,57:138:99:1405,0,2047 7 131241029 rs11277659 GGGCGAC G 5070.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.864;QD=23.05;ReadPosRankSum=1.18;SOR=0.78 GT:AD:DP:GQ:PL 0/1:89,131:220:99:5108,0,3997 7 131241085 rs7780021 G A 3008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.842;QD=14.33;ReadPosRankSum=0.487;SOR=0.886 GT:AD:DP:GQ:PL 0/1:86,124:210:99:3037,0,2097 7 132070054 rs741664 T C 2289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.621;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-1.088;SOR=0.785 GT:AD:DP:GQ:PL 0/1:103,94:197:99:2318,0,2344 7 132192295 rs156961 G A 2400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=0.366;SOR=0.75 GT:AD:DP:GQ:PL 0/1:137,116:253:99:2429,0,3374 7 132192949 rs156962 T C 2270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.169;SOR=0.863 GT:AD:DP:GQ:PL 0/1:120,93:213:99:2299,0,3018 7 133580447 rs2042456 G A 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.959;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.14;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.836;SOR=0.651 GT:AD:DP:GQ:PL 0/1:61,67:128:99:1483,0,1584 7 133749164 rs6953296 G A 2463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.806;SOR=0.822 GT:AD:DP:GQ:PL 0/1:109,108:217:99:2492,0,2637 7 133868507 rs1222419 C T 4726.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4755,480,0 7 134212741 rs2037005 A G 6456.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=30.17;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6485,642,0 7 134215403 rs1722883 T C 6452.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.59;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6481,594,0 7 134221826 rs28545160 A G 900.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.41;QD=39.16;SOR=2.4 GT:AD:DP:GQ:PL 1/1:0,23:23:69:929,69,0 7 134225788 rs4732036 C T 1915.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1944,203,0 7 134225827 rs4728329 A G 2195.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.14;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2224,250,0 7 134261097 rs2161803 C G 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.895;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=-0.144;QD=9.67;ReadPosRankSum=0.796;SOR=0.438 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1469,0,1944 7 134576441 rs6953822 T C 2305.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2334,219,0 7 134618710 rs6973420 A G 2255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.08;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.027;QD=11.94;ReadPosRankSum=0.045;SOR=0.489 GT:AD:DP:GQ:PL 0/1:96,93:189:99:2284,0,2595 7 134701856 rs4236655 G C 3075.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3104,317,0 7 134719551 rs9656447 C G 5432.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5461,525,0 7 134849213 rs3800592 G A 6103.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.399 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6132,612,0 7 134849280 rs292501 T A 7629.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7658,753,0 7 134849577 rs2288237 A C 8749.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8778,846,0 7 134871775 rs292557 C T 2551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.261;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-1.026;SOR=0.919 GT:AD:DP:GQ:PL 0/1:139,108:247:99:2580,0,3328 7 134879830 rs292575 G A 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.259;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=-0.233;SOR=0.99 GT:AD:DP:GQ:PL 0/1:102,59:161:99:1410,0,2676 7 134880884 rs292578 G C 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.138;SOR=0.843 GT:AD:DP:GQ:PL 0/1:104,92:196:99:2340,0,2628 7 134889141 rs292592 G A 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.171;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.366;SOR=0.675 GT:AD:DP:GQ:PL 0/1:98,115:213:99:2668,0,2498 7 134891961 rs2278130 G A 1138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.291;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=-1.193;SOR=0.846 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1167,0,1655 7 134925411 rs7805859 G A 8291.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.55;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,301:301:99:8320,902,0 7 135047703 rs6969632 T C 5379.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5408,541,0 7 135048804 rs3812265 C T 850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=1.449;SOR=0.906 GT:AD:DP:GQ:PL 0/1:42,39:81:99:879,0,1020 7 135095270 rs2696877 A G 2458.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.522 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2487,237,0 7 135262533 rs10252250 T C 841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.44;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=8.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.206;SOR=1.741 GT:AD:DP:GQ:PL 0/1:43,30:73:99:870,0,1057 7 135279315 rs7800214 A C 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.668;SOR=0.837 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1502,0,1780 7 135304273 rs7810767 G C 3785.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3814,384,0 7 135328110 rs10260691 C T 400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.409;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.27;ReadPosRankSum=-0.24;SOR=0.941 GT:AD:DP:GQ:PL 0/1:54,22:76:99:429,0,1374 7 135392876 rs3110800 T C 5605.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5634,540,0 7 135406176 rs4596594 A G 2173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.558;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=6.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.271;SOR=0.624 GT:AD:DP:GQ:PL 0/1:124,83:207:99:2202,0,2745 7 137092745 rs3217275 CA C 4703.73 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=35.37;SOR=1.222 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4741,400,0 7 137128830 rs1918837 T C 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.12;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=1.27;SOR=0.611 GT:AD:DP:GQ:PL 0/1:31,27:58:99:646,0,801 7 137782593 rs35402657 CT C 668.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.783;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.72;ReadPosRankSum=0.488;SOR=0.467 GT:AD:DP:GQ:PL 0/1:9,31:54:73:679,0,73 7 137801413 rs1872929 A C 2844.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.62;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2873,308,0 7 138200117 rs3757381 A T 787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.04;ReadPosRankSum=0.051;SOR=0.392 GT:AD:DP:GQ:PL 0/1:61,37:98:99:816,0,1610 7 138265310 rs33935215 A G 1588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=1.466;SOR=0.888 GT:AD:DP:GQ:PL 0/1:70,68:138:99:1617,0,1699 7 138305782 rs3734945 T C 3184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.971;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.54;ReadPosRankSum=0.201;SOR=0.744 GT:AD:DP:GQ:PGT:PID:PL 0/1:120,85:205:99:0|1:138305782_T_C:3213,0,5204 7 138305806 rs3734944 T C 3403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.591;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=-1.633;SOR=0.678 GT:AD:DP:GQ:PGT:PID:PL 0/1:128,96:224:99:0|1:138305782_T_C:3432,0,5319 7 138312122 rs2305816 A C 2453.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.2;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2482,261,0 7 138363767 rs10250576 A G 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-1.366;SOR=0.751 GT:AD:DP:GQ:PL 0/1:66,85:151:99:1884,0,1499 7 138434066 rs11324444 GA G 121.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.307;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=3.329;QD=1.32;ReadPosRankSum=-1.034;SOR=0.771 GT:AD:DP:GQ:PL 0/1:72,20:99:99:159,0,1645 7 138455988 rs10258719 A G 3922.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3951,398,0 7 138486096 rs61729750 G C 4215.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4244,435,0 7 138583840 rs7802841 C A 3428.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.074 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3457,345,0 7 138713715 rs11767739 G C 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.325;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.554;QD=12.38;ReadPosRankSum=-1.112;SOR=0.55 GT:AD:DP:GQ:PL 0/1:74,77:151:99:1897,0,1744 7 138732457 rs3735008 G A 2593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.812;SOR=0.693 GT:AD:DP:GQ:PL 0/1:99,111:210:99:2622,0,2423 7 138732497 rs3735007 G A 2400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-0.939;SOR=0.781 GT:AD:DP:GQ:PL 0/1:81,101:182:99:2429,0,1972 7 138740037 rs2297236 G C 2790.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2819,285,0 7 138758583 rs66770423 A G 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=4.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-0.488;SOR=0.404 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1440,0,1524 7 138761034 rs2297241 G C 2488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.885;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=1.847;SOR=0.513 GT:AD:DP:GQ:PL 0/1:90,91:181:99:2517,0,2245 7 138764060 rs2236424 G A 2799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=0.56;SOR=0.428 GT:AD:DP:GQ:PL 0/1:102,109:211:99:2828,0,2763 7 138764145 rs2236425 T C 2671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=2.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=0.008;SOR=0.777 GT:AD:DP:GQ:PL 0/1:105,111:216:99:2700,0,2516 7 138764233 rs2236426 C T 2697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=4.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=1.235;SOR=0.941 GT:AD:DP:GQ:PL 0/1:112,105:217:99:2726,0,2871 7 139138871 rs11763327 T G 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.048;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=5.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=1.134;SOR=0.569 GT:AD:DP:GQ:PL 0/1:39,49:88:99:1193,0,854 7 139138950 rs17160911 C G 959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-1.347;SOR=0.954 GT:AD:DP:GQ:PL 0/1:42,41:83:99:988,0,1045 7 139167934 rs1860150 T G 7230.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7259,707,0 7 139168063 rs12707447 G A 7509.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7538,753,0 7 139415723 rs10224408 G A 1726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=0.866;SOR=0.892 GT:AD:DP:GQ:PL 0/1:87,80:167:99:1755,0,2145 7 139415775 rs7456421 G C 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.34;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.438;SOR=0.753 GT:AD:DP:GQ:PL 0/1:93,96:189:99:2340,0,2380 7 139415943 rs4074826 G A 2521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.246;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.8;SOR=0.706 GT:AD:DP:GQ:PL 0/1:125,99:224:99:2550,0,3251 7 139653196 rs5768 A C 4228.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4257,444,0 7 139655425 rs141298701 C T 2567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.788;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=8.73;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.457;QD=11.72;ReadPosRankSum=-2.33;SOR=1.216 GT:AD:DP:GQ:PL 0/1:112,107:219:99:2596,0,2579 7 139724358 rs2269996 G A 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-1.072;SOR=0.685 GT:AD:DP:GQ:PL 0/1:94,84:178:99:1888,0,2080 7 139724555 rs3735352 C T 3088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.188;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.062;SOR=0.696 GT:AD:DP:GQ:PL 0/1:145,135:280:99:3117,0,3288 7 139727135 rs2286196 G A 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=4.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-3.292;SOR=1.014 GT:AD:DP:GQ:PL 0/1:92,98:190:99:2346,0,2275 7 139734069 rs35456446 C T 1396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=1.987;SOR=0.921 GT:AD:DP:GQ:PL 0/1:68,64:132:99:1425,0,1682 7 139754451 rs2362460 T C 2041.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2070,210,0 7 139797431 rs6950119 G T 341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.52;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.97;ReadPosRankSum=1.374;SOR=0.495 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,19:49:99:0|1:139797431_G_T:370,0,793 7 139801777 rs1062277 T G 1220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.404;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.961;SOR=1.051 GT:AD:DP:GQ:PL 0/1:35,49:84:99:1249,0,932 7 140043373 rs11772729 T C 1357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.771;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=-0.664;SOR=1.085 GT:AD:DP:GQ:PL 0/1:46,48:94:99:1386,0,1008 7 140051063 rs12703774 C T 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.132;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-0.74;SOR=0.807 GT:AD:DP:GQ:PL 0/1:70,59:129:99:1563,0,1853 7 140051091 rs12703775 G A 2001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-1.279;SOR=0.562 GT:AD:DP:GQ:PL 0/1:82,80:162:99:2030,0,2085 7 140051848 rs12665885 C T 932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=-0.756;SOR=0.921 GT:AD:DP:GQ:PL 0/1:83,47:130:99:961,0,2019 7 140080087 rs62490396 C G 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.507;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.139;SOR=0.777 GT:AD:DP:GQ:PL 0/1:53,34:87:99:861,0,1380 7 140125750 rs2948386 T C 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.613;SOR=0.659 GT:AD:DP:GQ:PL 0/1:85,91:176:99:2163,0,1931 7 140244531 . G T 3268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0;DP=256;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.925;QD=12.77;ReadPosRankSum=-0.401;SOR=0.66 GT:AD:DP:GQ:PL 0/1:117,139:256:99:3297,0,2930 7 140244560 rs2293177 C T 8108.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=29.59;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8137,821,0 7 140258000 rs12704003 T C 988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.086;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=1.035;SOR=0.57 GT:AD:DP:GQ:PL 0/1:51,43:94:99:1017,0,1170 7 140301731 rs269243 G T 8094.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8123,812,0 7 140395554 rs373239942 CT C 50.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.78;ReadPosRankSum=1.973;SOR=0.517 GT:AD:DP:GQ:PL 0/1:53,12:84:88:88,0,1205 7 140774467 rs477223 C G 8334.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8363,804,0 7 141137554 rs1727491 A G 8157.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=1.372 GT:AD:DP:GQ:PL 1/1:0,256:256:99:8186,767,0 7 141374030 . AAC A 1007.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DP=326;ExcessHet=3.0103;FS=8.611;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=2.325;QD=4;ReadPosRankSum=-0.327;SOR=1.047 GT:AD:DP:GQ:PL 0/1:201,51:276:99:1045,0,5976 7 141420768 rs6967301 A G 3652.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3681,360,0 7 141536351 rs370442337 CAG C 292.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.703;QD=2.87;ReadPosRankSum=-1.348;SOR=0.631 GT:AD:DP:GQ:PL 0/1:85,17:115:99:330,0,2721 7 141672705 rs1726866 G A 5054.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5083,489,0 7 141747658 rs2960746 A G 3566.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=29.24;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3595,365,0 7 141759274 rs2960758 T C 2542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.906;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.5;MQ=54.07;MQRankSum=-11.933;QD=10.55;ReadPosRankSum=-0.562;SOR=0.893 GT:AD:DP:GQ:PL 0/1:140,101:241:99:2571,0,3342 7 141764164 rs10271514 C T 2334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0.97;QD=11.79;ReadPosRankSum=1.488;SOR=1.029 GT:AD:DP:GQ:PL 0/1:103,95:198:99:2363,0,2835 7 141765410 rs62477626 T C 2977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=9.08;MLEAC=1;MLEAF=0.5;MQ=55.88;MQRankSum=1.046;QD=10.16;ReadPosRankSum=0.051;SOR=1.139 GT:AD:DP:GQ:PL 0/1:161,132:293:99:3006,0,3938 7 141794263 rs3087322 A G 6822.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.84;QD=27.96;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,244:244:99:6851,730,0 7 141796131 rs6975672 G A 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.365;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.5;MQ=44.6;MQRankSum=-2.58;QD=10.81;ReadPosRankSum=1.225;SOR=0.804 GT:AD:DP:GQ:PL 0/1:83,69:152:99:1672,0,2016 7 141799396 rs62479371 C T 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.694;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=5.71;MLEAC=1;MLEAF=0.5;MQ=59.25;MQRankSum=-0.25;QD=12.32;ReadPosRankSum=1.782;SOR=0.43 GT:AD:DP:GQ:PL 0/1:108,113:221:99:2751,0,2792 7 141952110 rs1052406 G A 4795.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4824,498,0 7 142460313 rs6666 T C 8019.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=30.15;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8048,798,0 7 142460865 rs6667 T C 4975.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5004,450,0 7 142655008 rs8176058 G A 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.107;SOR=0.464 GT:AD:DP:GQ:PL 0/1:83,88:171:99:2148,0,2015 7 142836203 rs73170678 A T 451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.781;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=11.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=2.207;SOR=2.316 GT:AD:DP:GQ:PL 0/1:33,19:52:99:480,0,805 7 142881540 rs4726600 G A 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.822;SOR=0.802 GT:AD:DP:GQ:PL 0/1:70,75:145:99:1817,0,1889 7 143016928 rs6962852 C T 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.387;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.366;SOR=0.69 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1219,0,1107 7 143017807 rs10282312 G T 3328.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3357,347,0 7 143036337 rs2272252 C T 1329.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.14;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1358,147,0 7 143043240 rs13438232 C T 2150.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=1.577 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2179,216,0 7 143088823 rs1804527 T C 7848.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7877,764,0 7 143088867 rs6967117 T C 7023.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7052,678,0 7 143092269 rs34372369 G A 1966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.28;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=0.228;SOR=0.689 GT:AD:DP:GQ:PL 0/1:67,69:136:99:1995,0,1821 7 143093538 rs10952549 G A 3425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=0.786;SOR=0.58 GT:AD:DP:GQ:PL 0/1:98,135:233:99:3454,0,2289 7 143097100 rs4725617 A G 8036.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8065,824,0 7 143105830 rs12703524 C A 362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.156;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.467;QD=5.95;ReadPosRankSum=1.015;SOR=0.643 GT:AD:DP:GQ:PL 0/1:41,20:61:99:391,0,1026 7 143141475 rs4595035 T C 4282.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4311,414,0 7 143175154 rs1404635 G A 2740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-1.323;SOR=0.74 GT:AD:DP:GQ:PL 0/1:97,124:221:99:2769,0,2244 7 143175345 rs10278721 C T 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=4.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=1.365;SOR=0.965 GT:AD:DP:GQ:PL 0/1:105,85:190:99:2002,0,2595 7 143269773 rs199661762 C T 496.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.225;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=5.892;MLEAC=1;MLEAF=0.5;MQ=23.51;MQRankSum=1.012;QD=3.79;ReadPosRankSum=-0.495;SOR=0.171 GT:AD:DP:GQ:PL 0/1:99,32:131:99:525,0,2343 7 143270001 rs201104924 C T 717.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.305;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=15.753;MLEAC=1;MLEAF=0.5;MQ=35.89;MQRankSum=2.608;QD=13.05;ReadPosRankSum=1.368;SOR=3.989 GT:AD:DP:GQ:PL 0/1:30,25:55:99:746,0,934 7 143270172 rs72611576 A G 5511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.276;ClippingRankSum=0;DB;DP=430;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.51;MQRankSum=-2.249;QD=12.91;ReadPosRankSum=0.246;SOR=0.657 GT:AD:DP:GQ:PL 0/1:195,232:427:99:5540,0,4247 7 143270431 rs377041391 T C 37.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=32.16;MQRankSum=-1.15;QD=4.2;ReadPosRankSum=-1.016;SOR=0.283 GT:AD:DP:GQ:PL 0/1:6,3:9:66:66,0,176 7 143416945 rs143124178 C T 644.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.65;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=28.816;MLEAC=1;MLEAF=0.5;MQ=25.5;MQRankSum=-1.824;QD=14.99;ReadPosRankSum=-0.265;SOR=5.764 GT:AD:DP:GQ:PL 0/1:16,27:43:99:673,0,353 7 143417083 rs144677924 T C 3395.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.325;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.5;MQ=34.22;MQRankSum=-0.96;QD=19.63;ReadPosRankSum=-0.881;SOR=0.623 GT:AD:DP:GQ:PL 0/1:41,132:173:99:3424,0,699 7 143417322 rs138258914 C T 1175.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.989;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25;MQRankSum=0;QD=15.47;ReadPosRankSum=1.956;SOR=1.432 GT:AD:DP:GQ:PL 0/1:27,49:76:99:1204,0,575 7 143417402 . C T 149.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.719;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25;MQRankSum=0;QD=4.99;ReadPosRankSum=-0.552;SOR=0.188 GT:AD:DP:GQ:PL 0/1:21,9:30:99:178,0,535 7 143453661 rs200907775 T G 608.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.594;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=47.988;MLEAC=1;MLEAF=0.5;MQ=45.43;MQRankSum=-6.314;QD=1.52;ReadPosRankSum=-1.272;SOR=2.663 GT:AD:DP:GQ:PL 0/1:346,54:400:99:637,0,8962 7 143554451 rs200166862 G A 43.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.02;MQRankSum=-0.176;QD=0.78;ReadPosRankSum=1.041;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,9:56:72:1|0:143554441_G_A:72,0,1268 7 143632984 rs61740239 G A 2443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.452;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.57;QD=11.26;ReadPosRankSum=0.762;SOR=0.566 GT:AD:DP:GQ:PL 0/1:120,97:217:99:2472,0,2952 7 143633297 rs984764 A G 757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.664;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=4.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.86;ReadPosRankSum=-0.826;SOR=1.52 GT:AD:DP:GQ:PL 0/1:27,24:51:99:786,0,706 7 143657801 rs2072166 A G 2490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-0.665;QD=11.32;ReadPosRankSum=0.169;SOR=0.791 GT:AD:DP:GQ:PL 0/1:115,105:220:99:2519,0,3056 7 143747481 rs79781351 AC A 699.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.906;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=5.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.28;SOR=1.485 GT:AD:DP:GQ:PL 0/1:41,23:64:99:737,0,1462 7 143747870 rs2961144 A G 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.682;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.209;SOR=0.456 GT:AD:DP:GQ:PL 0/1:92,74:166:99:1874,0,2261 7 143748098 rs6464573 G T 2858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=3.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=-1.071;SOR=0.903 GT:AD:DP:GQ:PL 0/1:192,130:322:99:2887,0,5062 7 143748257 rs6464574 G A 4212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=6.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.373;SOR=0.533 GT:AD:DP:GQ:PL 0/1:165,173:338:99:4241,0,4055 7 143748364 rs4407791 T C 7353.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7382,686,0 7 143771408 rs59319753 G C 3180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.766;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=1.883;SOR=0.671 GT:AD:DP:GQ:PL 0/1:132,121:253:99:3209,0,3555 7 143771536 rs6951485 G A 9442.77 PASS AC=2;AF=1;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,329:329:99:9471,985,0 7 143771937 rs2961135 G C 2352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=0.146;SOR=0.708 GT:AD:DP:GQ:PL 0/1:69,96:165:99:2381,0,1756 7 143807515 rs2961149 T G 6350.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.91;QD=44.72;SOR=0.75 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,142:142:99:1|1:143807515_T_G:6379,427,0 7 143807518 rs2951315 T C 6375.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.92;QD=44.59;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,143:143:99:1|1:143807515_T_G:6404,430,0 7 143826603 rs2961160 G T 3783.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.34;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3812,351,0 7 143826697 rs2961161 C G 6045.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=31;SOR=1.115 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6074,584,0 7 143826729 rs34602346 ACTT A 10062.7 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.82;QD=44.72;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,225:225:99:10100,678,0 7 143881059 rs201886132 G C 81.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.1;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23.3;MQRankSum=-0.549;QD=8.18;ReadPosRankSum=0.303;SOR=0.693 GT:AD:DP:GQ:PL 0/1:5,5:10:99:110,0,111 7 143882559 rs199840651 A G 532.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.837;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.75;MQRankSum=-1.316;QD=10.25;ReadPosRankSum=-0.913;SOR=0.495 GT:AD:DP:GQ:PL 0/1:29,23:52:99:561,0,762 7 143884370 rs118112343 G C 978.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.96;QD=33.75;SOR=6.804 GT:AD:DP:GQ:PL 1/1:0,29:29:87:1007,87,0 7 143929772 rs202091077 G A 672.79 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=10.522;MLEAC=2;MLEAF=1;MQ=31.74;MQRankSum=0.79;QD=23.2;ReadPosRankSum=1.398;SOR=1.946 GT:AD:DP:GQ:PL 1/1:2,27:29:23:701,23,0 7 143956461 rs199974780 T C 545.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.135;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.5;MQ=37.19;MQRankSum=-0.584;QD=10.7;ReadPosRankSum=-0.98;SOR=1.557 GT:AD:DP:GQ:PL 0/1:32,19:51:99:574,0,1067 7 143964051 rs200781769 G A 455.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.792;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.84;MQRankSum=-8.665;QD=3.21;ReadPosRankSum=-0.279;SOR=0.067 GT:AD:DP:GQ:PL 0/1:113,29:142:99:484,0,4365 7 143964267 rs201960823 A G 3733.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.529;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=9.962;MLEAC=1;MLEAF=0.5;MQ=33.76;MQRankSum=1.269;QD=9.22;ReadPosRankSum=0.549;SOR=0.909 GT:AD:DP:GQ:PL 0/1:264,141:405:99:3762,0,7142 7 143964381 rs200679159 T C 39.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.61;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.53;MQRankSum=-0.411;QD=0.18;ReadPosRankSum=1.221;SOR=0.717 GT:AD:DP:GQ:PL 0/1:201,21:222:68:68,0,5676 7 143964428 rs199675416 G A 769.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.84;MQRankSum=-1.66;QD=6.11;ReadPosRankSum=0.529;SOR=0.105 GT:AD:DP:GQ:PL 0/1:95,31:126:99:798,0,3295 7 144015434 rs141871720 A G 18010.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.36;QD=44.69;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,403:403:99:1|1:144015434_A_G:18039,1213,0 7 144015437 rs150229766 C T 18046.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.43;QD=44.89;SOR=0.723 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,402:402:99:1|1:144015434_A_G:18075,1216,0 7 144015687 rs202096920 C T 291.22 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-0.92;ClippingRankSum=0;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;MQRankSum=0;QD=24.27;ReadPosRankSum=0.301;SOR=3.611 GT:AD:DP:GQ:PL 1/1:1,11:12:4:318,4,0 7 144015720 rs201568948 C G 228.89 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=-0;QD=22.89;ReadPosRankSum=1.036;SOR=3.258 GT:AD:DP:GQ:PL 0/1:1,9:10:2:255,0,2 7 144059763 . A ATGGAGGCTGAGGAGGCCCAGCG 3256.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.645;ClippingRankSum=0;DP=631;ExcessHet=3.0103;FS=10.182;MLEAC=1;MLEAF=0.5;MQ=36.38;MQRankSum=-3.107;QD=5.3;ReadPosRankSum=-2.631;SOR=1.583 GT:AD:DP:GQ:PL 0/1:520,95:615:99:3294,0,26981 7 144060286 rs141058548 A G 2783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.502;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.5;MQ=44.58;MQRankSum=-0.981;QD=7.05;ReadPosRankSum=1.496;SOR=0.632 GT:AD:DP:GQ:PL 0/1:256,139:395:99:2812,0,6262 7 144060802 rs145771593 C T 8263.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.63;MQRankSum=1.125;QD=28.2;ReadPosRankSum=-0.57;SOR=0.327 GT:AD:DP:GQ:PL 1/1:1,292:293:99:8292,848,0 7 144095600 rs2699503 A G 4413.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4442,441,0 7 144096839 rs757388 A G 2430.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2459,245,0 7 144098992 rs727714 G A 1881.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1910,180,0 7 146805228 rs35167289 T TG 1306.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.76;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.578;QD=15.19;ReadPosRankSum=-0.378;SOR=0.667 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,39:86:99:1|0:146805220_AT_A:1344,0,1386 7 147092861 rs34592169 G A 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.358;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.65;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.015;SOR=0.612 GT:AD:DP:GQ:PL 0/1:67,66:133:99:1421,0,1858 7 147183143 rs2286127 A G 1604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.013;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.89;ReadPosRankSum=-0.583;SOR=0.892 GT:AD:DP:GQ:PL 0/1:35,66:101:99:1633,0,724 7 147926888 rs3779032 A C 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.238;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-1.334;SOR=0.913 GT:AD:DP:GQ:PL 0/1:62,59:121:99:1551,0,1560 7 148080726 rs77706740 C A 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.917;QD=14.24;ReadPosRankSum=0.401;SOR=0.89 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1652,0,1389 7 148106475 rs72268642 C CTT 774.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-1.251;SOR=1.287 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,22:58:99:0|1:148106475_C_CTT:812,0,3811 7 148106477 rs60451214 C CTG 816.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=-0.917;SOR=1.371 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,22:59:99:0|1:148106475_C_CTT:854,0,3807 7 148106490 rs9648691 G A 970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=-1.296;SOR=1.313 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,28:69:99:0|1:148106475_C_CTT:999,0,3877 7 148311115 rs11434056 G GT 2902.73 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.61;SOR=1.338 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2940,271,0 7 148702486 rs7795577 A G 709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-0.585;SOR=0.336 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,24:53:99:0|1:148702486_A_G:738,0,1307 7 148801091 rs11525060 G A 3341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.63;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=5.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=1.278;SOR=0.724 GT:AD:DP:GQ:PL 0/1:126,138:264:99:3370,0,3356 7 148801337 rs12704061 T C 4730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=1.1;SOR=0.588 GT:AD:DP:GQ:PL 0/1:206,200:406:99:4759,0,5088 7 148801658 rs1137432 C T 3806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=1.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.533;SOR=0.583 GT:AD:DP:GQ:PL 0/1:164,154:318:99:3835,0,4457 7 148851213 rs917124 G A 3433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-0.776;SOR=0.609 GT:AD:DP:GQ:PL 0/1:134,140:274:99:3462,0,3487 7 148947279 rs11769362 A G 2532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.088;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=1.231;SOR=0.614 GT:AD:DP:GQ:PL 0/1:113,102:215:99:2561,0,2618 7 149152770 rs3735319 A G 4484.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=31.58;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4513,425,0 7 149152906 rs3735318 G A 7972.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8001,816,0 7 149153057 rs73166027 G C 3648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.334;SOR=0.613 GT:AD:DP:GQ:PL 0/1:122,158:280:99:3677,0,2805 7 149419571 . G GGCC 247.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.669;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=156.543;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=3.109;QD=2.27;ReadPosRankSum=-4.439;SOR=5.991 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,19:109:99:0|1:149419571_G_GGCC:285,0,5038 7 149419574 . CAG C 227.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.101;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=137.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.13;ReadPosRankSum=-4.899;SOR=5.666 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,16:107:99:0|1:149419571_G_GGCC:265,0,5127 7 149419580 . T C 211.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.011;ClippingRankSum=0;DP=105;ExcessHet=3.0103;FS=141.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.02;ReadPosRankSum=-5.299;SOR=5.666 GT:AD:DP:GQ:PGT:PID:PL 0/1:89,16:105:99:0|1:149419571_G_GGCC:240,0,5200 7 149419584 . A C 218.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DP=106;ExcessHet=3.0103;FS=113.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.06;ReadPosRankSum=-4.655;SOR=5.278 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,13:106:99:0|1:149419571_G_GGCC:247,0,5038 7 149420820 rs11462346 C CT 1905.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.519;QD=16.29;ReadPosRankSum=-1.361;SOR=0.604 GT:AD:DP:GQ:PL 0/1:50,67:117:99:1943,0,1395 7 149426305 rs11424737 G GC 5903.73 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.56;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5941,502,0 7 149427409 rs709065 T G 3673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.248;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.192;SOR=0.756 GT:AD:DP:GQ:PL 0/1:142,138:280:99:3702,0,3678 7 149476666 rs57553723 G GC 6403.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=32.84;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,195:197:99:6432,598,0 7 149506211 rs71194663 G GC 8406.73 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=37.53;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,224:224:99:8444,683,0 7 149511985 rs10952230 A G 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.448;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-1.218;SOR=0.761 GT:AD:DP:GQ:PL 0/1:106,98:204:99:2503,0,2459 7 149529970 rs55976638 G T 1950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.538;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=-0.613;SOR=0.774 GT:AD:DP:GQ:PL 0/1:112,106:218:99:1979,0,2823 7 150093701 rs940453 A C 8023.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,247:247:99:8052,741,0 7 150094851 rs13225910 A G 10089.8 PASS AC=2;AF=1;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,330:330:99:10118,989,0 7 150217248 rs3735081 A G 4592.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.28;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4621,414,0 7 150217309 rs3735080 C T 1672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.942;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=2.079;SOR=0.836 GT:AD:DP:GQ:PL 0/1:112,74:188:99:1701,0,2694 7 150269917 rs61741802 G A 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.957;SOR=0.538 GT:AD:DP:GQ:PL 0/1:78,71:149:99:1623,0,1899 7 150325175 rs13234724 C T 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.558;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.438;SOR=0.513 GT:AD:DP:GQ:PL 0/1:115,84:199:99:2153,0,3060 7 150384193 . CGT C 110.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.36;ReadPosRankSum=-1.393;SOR=0.551 GT:AD:DP:GQ:PL 0/1:24,9:36:99:148,0,532 7 150488616 rs2302479 A G 3735.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3764,395,0 7 150490376 rs2072443 C T 4327.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4356,423,0 7 150491084 rs3173833 T G 4096.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4125,437,0 7 150500729 rs741064 A G 5748.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5777,551,0 7 150501455 rs10378 G T 2844.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2873,299,0 7 150501516 rs9088 A G 4238.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4267,435,0 7 150556002 rs1049748 T C 7983.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,251:251:99:8012,752,0 7 150556055 rs6943147 C G 13812.8 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.7;SOR=0.739 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,309:309:99:1|1:150556055_C_G:13841,930,0 7 150556056 rs6943420 G C 13812.8 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.7;SOR=0.739 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,309:309:99:1|1:150556055_C_G:13841,930,0 7 150645534 rs1805123 T G 2284.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=23.55;SOR=1.469 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2313,276,0 7 150648198 rs1137617 A G 4476.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4505,432,0 7 150708089 rs891512 A G 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.01;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=-1.353;SOR=0.673 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1210,0,1003 7 150709571 rs7830 G T 863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.59;ReadPosRankSum=-0.297;SOR=0.826 GT:AD:DP:GQ:PL 0/1:89,42:131:99:892,0,2320 7 150713902 rs77573754 G GC 10493.7 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=37.34;SOR=1.183 GT:AD:DP:GQ:PL 1/1:0,281:281:99:10531,845,0 7 150720308 rs12666075 G T 3027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=3.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.713;SOR=0.933 GT:AD:DP:GQ:PL 0/1:111,121:232:99:3056,0,2879 7 150731698 rs2303924 C T 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.211;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=2.133;SOR=0.627 GT:AD:DP:GQ:PL 0/1:86,99:185:99:2357,0,1951 7 150733025 rs2303926 T A 2947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.34;SOR=0.558 GT:AD:DP:GQ:PL 0/1:122,127:249:99:2976,0,2809 7 150761597 rs34262985 C T 1893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=2.71;SOR=0.824 GT:AD:DP:GQ:PL 0/1:85,75:160:99:1922,0,2063 7 150763655 rs2229549 T A 7273.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7302,738,0 7 150765065 rs2229550 T C 4818.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.69;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4847,520,0 7 150767540 rs2303934 C T 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=0.034;SOR=0.521 GT:AD:DP:GQ:PL 0/1:93,50:143:99:1153,0,2580 7 150768786 rs2303937 G A 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.469;SOR=0.546 GT:AD:DP:GQ:PL 0/1:86,89:175:99:2177,0,2154 7 150773807 rs7262 A T 1122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.625;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=4.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.385;SOR=1.179 GT:AD:DP:GQ:PL 0/1:55,51:106:99:1151,0,1212 7 150783900 . C CG 460.73 PASS AC=2;AF=1;AN=2;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.39;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,12:12:36:1|1:150783900_C_CG:498,36,0 7 150783903 . T G 469.77 PASS AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.98;SOR=4.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,10:10:36:1|1:150783900_C_CG:498,36,0 7 150783906 . C G 466.77 PASS AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=51.86;SOR=4.615 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,9:9:33:1|1:150783900_C_CG:495,33,0 7 150783908 . C CG 457.73 PASS AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.77;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,10:10:33:1|1:150783900_C_CG:495,33,0 7 150783911 . A G 556.77 PASS AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=50.62;SOR=1.802 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,11:11:39:1|1:150783900_C_CG:585,39,0 7 150783917 . T G 601.77 PASS AC=2;AF=1;AN=2;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.29;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,13:13:42:1|1:150783900_C_CG:630,42,0 7 150783919 . GTCT G 641.73 PASS AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.84;SOR=0.976 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,14:14:48:1|1:150783900_C_CG:679,48,0 7 150783922 . T TGGGG 641.73 PASS AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.84;SOR=0.976 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,14:14:48:1|1:150783900_C_CG:679,48,0 7 150812493 rs6971966 G C 4620.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4649,476,0 7 150912020 rs55866446 T C 2432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.929;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-0.949;SOR=0.743 GT:AD:DP:GQ:PL 0/1:123,106:229:99:2461,0,2848 7 150915948 rs7782699 C T 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.741;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-2.91;SOR=0.662 GT:AD:DP:GQ:PL 0/1:104,87:191:99:1949,0,2754 7 150916228 rs6949587 G A 1326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.963;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=6.476;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.075;QD=9.76;ReadPosRankSum=-0.604;SOR=0.351 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1355,0,1833 7 150921950 rs6464133 A G 4445.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4474,447,0 7 150931268 rs2608293 C G 2225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.146;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.754;SOR=0.634 GT:AD:DP:GQ:PL 0/1:96,85:181:99:2254,0,2474 7 150934975 rs2487154 C G 2349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.009;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-1.271;SOR=0.923 GT:AD:DP:GQ:PL 0/1:92,94:186:99:2378,0,2256 7 151038887 rs113920358 C T 2697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.155;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=4.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.094;SOR=0.425 GT:AD:DP:GQ:PL 0/1:95,107:202:99:2726,0,2281 7 151053043 rs446886 A G 3141.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.115 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3170,315,0 7 151064064 rs386956 C T 4182.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4211,449,0 7 151074296 rs2159158 A G 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.105;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.18;SOR=0.933 GT:AD:DP:GQ:PL 0/1:44,45:89:99:1148,0,1054 7 151078735 rs4141455 A G 9673.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,315:315:99:9702,944,0 7 151078845 rs4141454 G A 1042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.584;SOR=0.306 GT:AD:DP:GQ:PL 0/1:50,40:90:99:1071,0,1488 7 151097323 rs11767693 A G 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.946;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.225;SOR=0.631 GT:AD:DP:GQ:PL 0/1:92,70:162:99:1712,0,2323 7 151168534 rs6956899 G A 468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.67;MQRankSum=2.143;QD=14.65;ReadPosRankSum=0.153;SOR=0.644 GT:AD:DP:GQ:PL 0/1:14,18:32:99:497,0,385 7 151680072 rs6960270 T C 4008.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4037,390,0 7 151684256 rs61729490 A G 722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.862;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=1.024;SOR=0.569 GT:AD:DP:GQ:PL 0/1:46,32:78:99:751,0,1130 7 151818777 rs967093 T C 5944.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.122 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5973,594,0 7 151882622 rs112646605 TAG T 85.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.38;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-6.888;QD=1.75;ReadPosRankSum=0.484;SOR=0.368 GT:AD:DP:GQ:PL 0/1:43,6:49:99:123,0,1767 7 151927021 rs28522267 C A 6122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.38;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=5.826;MLEAC=1;MLEAF=0.5;MQ=45.77;MQRankSum=-10.753;QD=19.19;ReadPosRankSum=-1.523;SOR=0.993 GT:AD:DP:GQ:PGT:PID:PL 0/1:161,158:319:99:0|1:151927021_C_A:6151,0,6418 7 151927025 rs183684706 A G 324.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=45.68;MQRankSum=4.4;QD=0.99;ReadPosRankSum=0.405;SOR=0.786 GT:AD:DP:GQ:PL 0/1:278,50:328:99:353,0,10052 7 151927026 rs28439884 T C 6157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=4.937;MLEAC=1;MLEAF=0.5;MQ=45.68;MQRankSum=-10.832;QD=18.77;ReadPosRankSum=-1.471;SOR=0.94 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,162:328:99:0|1:151927021_C_A:6186,0,6486 7 151927127 rs62481502 A G 2322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=44.12;MQRankSum=-8.159;QD=12.56;ReadPosRankSum=0.567;SOR=0.643 GT:AD:DP:GQ:PL 0/1:87,98:185:99:2351,0,2059 7 151932897 rs73728782 C A 404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.834;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.27;MQRankSum=-5.897;QD=3.93;ReadPosRankSum=0.825;SOR=0.667 GT:AD:DP:GQ:PL 0/1:73,30:103:99:433,0,1816 7 151935831 rs62478303 G A 273.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.898;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=8.285;MLEAC=1;MLEAF=0.5;MQ=53.53;MQRankSum=-2.886;QD=1.59;ReadPosRankSum=-2.608;SOR=1.462 GT:AD:DP:GQ:PL 0/1:144,28:172:99:302,0,3760 7 151935853 rs4024420 T C 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.843;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=20.34;MLEAC=1;MLEAF=0.5;MQ=54.09;MQRankSum=-8.726;QD=4.71;ReadPosRankSum=-5.295;SOR=2.293 GT:AD:DP:GQ:PL 0/1:111,34:145:99:711,0,2856 7 151945007 rs137949498 C T 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.064;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.5;MQ=57.19;MQRankSum=0.257;QD=10.25;ReadPosRankSum=-1.323;SOR=0.93 GT:AD:DP:GQ:PL 0/1:156,115:271:99:2807,0,3891 7 151945071 rs150073007 G GT 2421.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.506;ClippingRankSum=0;DB;DP=404;ExcessHet=3.0103;FS=0.42;MLEAC=1;MLEAF=0.5;MQ=57.73;MQRankSum=0.587;QD=6.07;ReadPosRankSum=2.415;SOR=0.66 GT:AD:DP:GQ:PL 0/1:300,99:399:99:2459,0,10026 7 151945140 rs57648310 C T 1110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=8.591;MLEAC=1;MLEAF=0.5;MQ=54.01;MQRankSum=-1.493;QD=3.36;ReadPosRankSum=0.021;SOR=1.183 GT:AD:DP:GQ:PL 0/1:260,71:331:99:1139,0,7139 7 151945167 rs2537264 G T 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=28.513;MLEAC=1;MLEAF=0.5;MQ=51.92;MQRankSum=-3.93;QD=6.86;ReadPosRankSum=0.628;SOR=1.88 GT:AD:DP:GQ:PL 0/1:209,92:301:99:2093,0,5554 7 151945204 rs4024453 G A 2574.77 SNP_FS_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.846;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=175.659;MLEAC=1;MLEAF=0.5;MQ=49.45;MQRankSum=-12.542;QD=11.7;ReadPosRankSum=-0.101;SOR=7.378 GT:AD:DP:GQ:PL 0/1:140,80:220:99:2603,0,3855 7 151945215 rs594178 T C 153.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.285;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=44.833;MLEAC=1;MLEAF=0.5;MQ=49.36;MQRankSum=-6.072;QD=0.72;ReadPosRankSum=-0.16;SOR=5.481 GT:AD:DP:GQ:PL 0/1:192,22:214:99:182,0,7664 7 151945225 rs202098135 T C 117.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.48;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=36.684;MLEAC=1;MLEAF=0.5;MQ=49.07;MQRankSum=-5.369;QD=0.59;ReadPosRankSum=0.799;SOR=5.104 GT:AD:DP:GQ:PL 0/1:180,19:199:99:146,0,7187 7 151962176 rs62478356 T A 8321.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.248;ClippingRankSum=0;DB;DP=1152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.09;MQRankSum=-13.82;QD=7.23;ReadPosRankSum=0.588;SOR=0.684 GT:AD:DP:GQ:PL 0/1:676,475:1151:99:8350,0,15672 7 151962309 rs201948579 G A 3090.77 SNP_FS_filter;SNP_MQRankSum_filter;SNP_ReadPosRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.637;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=129.432;MLEAC=1;MLEAF=0.5;MQ=47.27;MQRankSum=-15.663;QD=9.75;ReadPosRankSum=-9.207;SOR=5.079 GT:AD:DP:GQ:PL 0/1:187,130:317:99:3119,0,4846 7 151970856 rs10454320 T A 3707.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.96;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=9.891;MLEAC=1;MLEAF=0.5;MQ=49.66;MQRankSum=-16.559;QD=10.91;ReadPosRankSum=-0.107;SOR=1.039 GT:AD:DP:GQ:PL 0/1:180,160:340:99:3736,0,4291 7 151970931 rs56850341 G A 167.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.997;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=58.012;MLEAC=1;MLEAF=0.5;MQ=53.57;MQRankSum=-9.158;QD=0.85;ReadPosRankSum=5.208;SOR=6.085 GT:AD:DP:GQ:PL 0/1:172,26:198:99:196,0,4722 7 152346007 rs3218536 C T 2633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.666;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.906;SOR=0.547 GT:AD:DP:GQ:PL 0/1:102,104:206:99:2662,0,2509 7 153750160 rs199977459 TC T 2025.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.751;QD=15.95;ReadPosRankSum=1.277;SOR=0.564 GT:AD:DP:GQ:PL 0/1:65,62:127:99:2063,0,2148 7 154862621 rs6320 T A 5603.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5632,534,0 7 154862652 rs11575874 C T 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.181;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=-0.483;SOR=0.539 GT:AD:DP:GQ:PL 0/1:119,78:197:99:1863,0,3097 7 155251433 rs3735653 C T 3785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=1.236;SOR=0.505 GT:AD:DP:GQ:PL 0/1:196,158:354:99:3814,0,5265 7 155255385 rs12674067 C T 2051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.008;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.105;SOR=0.454 GT:AD:DP:GQ:PL 0/1:91,86:177:99:2080,0,2269 7 155295804 rs35244674 GA G 495.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=0.568;SOR=0.427 GT:AD:DP:GQ:PL 0/1:31,30:70:99:533,0,664 7 155503920 rs7800753 A T 2109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.391;SOR=0.94 GT:AD:DP:GQ:PL 0/1:108,99:207:99:2138,0,2305 7 155530363 rs2249337 A G 1468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.603;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-1.668;SOR=0.859 GT:AD:DP:GQ:PL 0/1:61,54:115:99:1497,0,1520 7 155530954 rs2178428 T C 2845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.854;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.492;SOR=0.672 GT:AD:DP:GQ:PL 0/1:105,108:213:99:2874,0,2651 7 155531080 rs3735576 A G 2699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.973;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=0.214;SOR=0.604 GT:AD:DP:GQ:PL 0/1:91,103:194:99:2728,0,2116 7 156468377 rs2886380 G C 1880.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.057;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.39;ReadPosRankSum=-2.259;SOR=0.826 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1909,129,0 7 156468378 rs2886381 C A 903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=9.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=2.272;SOR=0.589 GT:AD:DP:GQ:PL 0/1:27,34:63:99:932,0,623 7 156468559 rs3823617 T C 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.141;SOR=0.649 GT:AD:DP:GQ:PL 0/1:48,56:104:99:1445,0,1151 7 156469096 rs2302149 C T 956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.462;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=7.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=2.236;SOR=1.557 GT:AD:DP:GQ:PL 0/1:51,39:90:99:985,0,1181 7 156469123 rs2302148 G A 1713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.78;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.07;SOR=0.44 GT:AD:DP:GQ:PL 0/1:60,74:134:99:1742,0,2399 7 156469133 rs2302147 C G 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.84;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.066;SOR=0.748 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1707,0,3144 7 156469179 rs2302146 C T 1832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=0.504;SOR=0.693 GT:AD:DP:GQ:PL 0/1:110,82:192:99:1861,0,2693 7 156469190 rs2302145 A G 5708.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5737,588,0 7 156518195 rs59912051 G A 867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.113;SOR=0.735 GT:AD:DP:GQ:PL 0/1:45,46:91:99:896,0,1004 7 156589149 rs112583005 A G 1110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=2.166;SOR=0.648 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1139,0,1037 7 156746890 rs61740447 C T 2174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.049;SOR=0.658 GT:AD:DP:GQ:PL 0/1:104,100:204:99:2203,0,2294 7 156754975 rs77054396 A G 2140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.01;ReadPosRankSum=-0.57;SOR=0.525 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,58:107:99:0|1:156754975_A_G:2169,0,1926 7 156761818 rs2302445 G A 1034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.83;SOR=0.805 GT:AD:DP:GQ:PL 0/1:35,48:83:99:1063,0,673 7 156762224 rs2302443 G C 2501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.9;ReadPosRankSum=-1.559;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,65:148:99:0|1:156762224_G_C:2530,0,4662 7 156762248 rs12919 G A 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=2.709;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,76:173:99:0|1:156762224_G_C:2715,0,4989 7 156802643 . A AGCGGCG 279.73 PASS AC=2;AF=1;AN=2;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;QD=69.93;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,4:6:17:246,17,0 7 157873975 rs3800863 T C 4015.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4044,426,0 7 157903504 rs3800860 C T 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.08;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=4.174;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=1.062;SOR=1.017 GT:AD:DP:GQ:PL 0/1:106,86:192:99:1854,0,2353 7 157903538 rs1130501 A G 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.048;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=4.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.299;SOR=0.529 GT:AD:DP:GQ:PL 0/1:116,106:222:99:2327,0,2595 7 157926349 rs17847428 T G 2742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.141;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=0.657;SOR=0.702 GT:AD:DP:GQ:PL 0/1:92,103:195:99:2771,0,2127 7 157959620 rs10277232 C T 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.342;SOR=0.766 GT:AD:DP:GQ:PGT:PID:PL 0/1:125,105:230:99:0|1:157959620_C_T:2536,0,3353 7 157959636 rs1130498 G A 8968.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.03;SOR=0.757 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,256:256:99:1|1:157959620_C_T:8997,768,0 7 157959879 rs1130497 C T 4351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=2.35;SOR=0.71 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,121:285:99:0|1:157959879_C_T:4380,0,6123 7 157959895 rs1130496 C T 4534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.31;ReadPosRankSum=0.296;SOR=0.701 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,124:278:99:0|1:157959879_C_T:4563,0,5985 7 157959911 rs1130495 A G 10209.8 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.59;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,279:279:99:10238,845,0 7 157985149 rs3800855 C G 2839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.511;SOR=0.641 GT:AD:DP:GQ:PL 0/1:161,129:290:99:2868,0,3862 7 158444975 rs1466210 T G 3946.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.67;ReadPosRankSum=-0.714;SOR=0.983 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3975,349,0 7 158672476 rs2709859 C G 7110.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7139,711,0 7 158715219 rs2730238 A G 5081.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5110,509,0 7 158719084 rs2244789 C T 3986.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.15;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4015,372,0 7 158734813 rs34634437 C T 5571.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5600,563,0 7 158851234 rs2098349 T G 2858.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.49;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2887,311,0 7 158896517 rs2270313 G A 3467.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.52;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3496,377,0 8 363192 rs10090550 G A 629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.252;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.5;MQ=53.39;MQRankSum=-6.697;QD=5.29;ReadPosRankSum=-0.452;SOR=0.611 GT:AD:DP:GQ:PL 0/1:84,35:119:99:658,0,1978 8 381344 rs28438773 C G 407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.122;SOR=0.439 GT:AD:DP:GQ:PL 0/1:19,18:37:99:436,0,559 8 494658 rs71202629 GGGCGGC G 3217.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.047;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=7.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.97;ReadPosRankSum=2.579;SOR=0.598 GT:AD:DP:GQ:PL 0/1:128,87:217:99:3255,0,7495 8 618728 rs2271263 A G 2197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.461;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-1.741;SOR=0.764 GT:AD:DP:GQ:PL 0/1:115,98:213:99:2226,0,2659 8 623593 rs55783038 G A 4995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0;DB;DP=441;ExcessHet=3.0103;FS=3.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.854;SOR=0.757 GT:AD:DP:GQ:PL 0/1:222,219:441:99:5024,0,5344 8 623696 rs61741834 G A 4094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.621;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=1;QD=11.44;ReadPosRankSum=0.587;SOR=0.743 GT:AD:DP:GQ:PL 0/1:180,178:358:99:4123,0,4699 8 665858 rs1869074 C T 2013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.56;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.776;SOR=0.707 GT:AD:DP:GQ:PL 0/1:87,90:177:99:2042,0,2270 8 1496788 rs2906569 A G 3292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.9;ReadPosRankSum=0.483;SOR=0.727 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,93:184:99:0|1:1496767_C_G:3321,0,4254 8 1514009 rs2301963 C A 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-1.669;SOR=0.652 GT:AD:DP:GQ:PL 0/1:137,108:245:99:2405,0,3532 8 1581226 rs6995760 A G 2589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=5.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=0.559;SOR=0.421 GT:AD:DP:GQ:PL 0/1:89,106:195:99:2618,0,2058 8 1616718 rs2235112 A G 5809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.469;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.7;ReadPosRankSum=2.391;SOR=0.803 GT:AD:DP:GQ:PL 0/1:156,214:370:99:5838,0,3419 8 1806229 rs4875950 A C 6104.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.173 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6133,599,0 8 1830794 rs2280886 G A 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.318;SOR=0.733 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1616,0,1580 8 1830928 rs4543586 A G 1512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.149;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.652;QD=13.63;ReadPosRankSum=0.302;SOR=0.787 GT:AD:DP:GQ:PL 0/1:52,59:111:99:1541,0,1258 8 1833801 rs9657362 G C 752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=1.309;SOR=0.627 GT:AD:DP:GQ:PL 0/1:47,35:82:99:781,0,1090 8 1900855 rs7832438 A G 6547.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=1.115 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6576,687,0 8 1905132 rs3735876 G A 2530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.757;SOR=0.678 GT:AD:DP:GQ:PL 0/1:113,106:219:99:2559,0,2817 8 2005624 rs3765206 G A 2290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-1.797;SOR=0.777 GT:AD:DP:GQ:PL 0/1:136,99:235:99:2319,0,3499 8 2021421 rs2272720 G T 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.389;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=-0.559;SOR=0.656 GT:AD:DP:GQ:PL 0/1:60,64:124:99:1722,0,1595 8 2024207 rs7822836 A C 6581.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=1.325 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6610,608,0 8 2027633 rs1440291 C G 1356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.559;SOR=0.883 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1385,0,1401 8 2037833 rs2294061 G C 1925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.26;SOR=0.527 GT:AD:DP:GQ:PL 0/1:93,88:181:99:1954,0,2179 8 2040337 rs6420202 T C 5363.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5392,533,0 8 2048811 rs4876227 A C 7057.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.34;SOR=0.938 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,189:189:99:1|1:2048811_A_C:7086,568,0 8 2048831 rs968381 A G 2282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.687;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=0.352;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,89:177:99:0|1:2048811_A_C:2311,0,2090 8 2054012 rs12677887 C T 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.711;SOR=0.688 GT:AD:DP:GQ:PL 0/1:63,52:115:99:1277,0,1531 8 2054066 rs17684416 A G 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.862;SOR=0.565 GT:AD:DP:GQ:PL 0/1:81,99:180:99:2340,0,1942 8 2054171 rs3817705 C T 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=1.211;SOR=0.721 GT:AD:DP:GQ:PL 0/1:93,72:165:99:1765,0,2360 8 2054195 rs3817706 C G 4422.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4451,405,0 8 2057298 rs2280897 C T 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.05;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.433;SOR=0.641 GT:AD:DP:GQ:PL 0/1:73,87:160:99:1940,0,1715 8 2796277 rs585000 C T 2366.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2395,246,0 8 2806920 rs5741961 G GAAAGAAAAGA 1255.73 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.3;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,29:29:87:1293,87,0 8 2820745 rs667859 G C 2368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.257;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.18;ReadPosRankSum=-0.789;SOR=0.704 GT:AD:DP:GQ:PL 0/1:66,90:156:99:2397,0,1469 8 2832139 rs667595 C G 4381.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.34 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4410,442,0 8 2909992 rs6558702 G A 3931.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3960,404,0 8 2910020 rs6558703 A G 4777.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4806,477,0 8 2965244 rs3824271 T C 2016.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=29.66;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2045,204,0 8 3165207 rs10103770 A G 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.845;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-1.455;SOR=0.843 GT:AD:DP:GQ:PL 0/1:63,61:124:99:1434,0,1404 8 3165814 rs1393843 A C 3242.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3271,297,0 8 3224561 rs4875703 T C 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.592;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=4.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.91;ReadPosRankSum=-0.895;SOR=1.179 GT:AD:DP:GQ:PL 0/1:51,66:117:99:1773,0,1023 8 3226899 rs6984477 A T 358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.172;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.518;SOR=0.892 GT:AD:DP:GQ:PL 0/1:16,15:31:99:387,0,424 8 3253768 rs3802303 C T 2073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=4.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-1.289;SOR=0.985 GT:AD:DP:GQ:PL 0/1:74,89:163:99:2102,0,1754 8 3263758 rs12543118 A G 2559.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=30.47;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2588,252,0 8 3265590 rs10088378 C T 4851.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4880,474,0 8 3351147 rs17066296 G A 1163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.186;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-2.414;SOR=0.882 GT:AD:DP:GQ:PL 0/1:60,54:114:99:1192,0,1361 8 3351195 rs56109797 C A 1240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=2.828;SOR=0.468 GT:AD:DP:GQ:PL 0/1:66,59:125:99:1269,0,1691 8 3351264 rs9314495 G A 1705.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.651 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1734,168,0 8 3443799 rs5888973 GA G,GAA 1772.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=9.606;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;MQRankSum=0.258;QD=20.14;ReadPosRankSum=1.051;SOR=1.536 GT:AD:DP:GQ:PL 1/2:4,52,32:98:99:1810,845,1092,1124,0,1469 8 6272399 rs2305022 G T 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=1.29;SOR=0.578 GT:AD:DP:GQ:PL 0/1:66,51:117:99:1075,0,1583 8 6296550 rs2442513 G T 3608.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3637,378,0 8 6302183 rs930557 G C 4773.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.92;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4802,435,0 8 6302418 rs2515569 A G 5490.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.3;SOR=0.983 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5519,510,0 8 6371291 rs2916747 A G 1662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=2.113;SOR=0.772 GT:AD:DP:GQ:PL 0/1:64,71:135:99:1691,0,1523 8 6378763 rs3020221 C T 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.17;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=7.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=0.624;SOR=0.311 GT:AD:DP:GQ:PL 0/1:50,72:122:99:1700,0,1375 8 6378784 rs55633437 C A 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.696;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=4.254;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.465;SOR=1.028 GT:AD:DP:GQ:PL 0/1:71,57:128:99:1394,0,1652 8 6390027 rs2515481 A G 3267.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3296,320,0 8 6478956 rs2936531 A G 2249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.521;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-0.008;SOR=0.836 GT:AD:DP:GQ:PL 0/1:78,90:168:99:2278,0,1724 8 6478986 rs2912010 C T 2429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.389;SOR=0.684 GT:AD:DP:GQ:PL 0/1:95,106:201:99:2458,0,2269 8 6479042 rs1057090 C T 2936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.81;SOR=0.693 GT:AD:DP:GQ:PL 0/1:115,129:244:99:2965,0,2799 8 6500544 rs1057091 C T 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.368;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.229;SOR=0.624 GT:AD:DP:GQ:PL 0/1:57,46:103:99:1115,0,1343 8 6673377 rs11338621 CA C 4177.73 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.61;QD=39.41;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,106:106:99:4215,319,0 8 6681256 rs9772979 A C 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.601;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=-0.037;SOR=0.884 GT:AD:DP:GQ:PL 0/1:43,48:91:99:1286,0,1031 8 6690276 rs2741098 T C 3116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.368;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=0.42;SOR=0.768 GT:AD:DP:GQ:PL 0/1:114,119:233:99:3145,0,2653 8 6692968 rs2977806 C T 2061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=-0.939;SOR=0.839 GT:AD:DP:GQ:PL 0/1:116,96:212:99:2090,0,2820 8 6735300 rs2293958 T A 2696.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2725,264,0 8 6735399 rs11362 C T 1004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.568;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.399;SOR=0.651 GT:AD:DP:GQ:PL 0/1:47,39:86:99:1033,0,1087 8 6913031 rs2272719 G A 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.728;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-1.444;SOR=0.922 GT:AD:DP:GQ:PL 0/1:85,59:144:99:1398,0,1837 8 7215694 rs9693671 A G 12092.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.648;ClippingRankSum=0;DB;DP=870;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.98;MQRankSum=-10.201;QD=13.92;ReadPosRankSum=-0.14;SOR=0.723 GT:AD:DP:GQ:PL 0/1:411,458:869:99:12121,0,9755 8 7217172 rs56023905 G A 5323.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0;DB;DP=481;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.68;MQRankSum=-14.73;QD=11.07;ReadPosRankSum=-1.243;SOR=0.672 GT:AD:DP:GQ:PL 0/1:256,225:481:99:5352,0,6210 8 7217795 rs76373071 T G 5520.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.707;ClippingRankSum=0;DB;DP=566;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.5;MQ=52.05;MQRankSum=-18.483;QD=9.77;ReadPosRankSum=1.274;SOR=0.638 GT:AD:DP:GQ:PL 0/1:315,250:565:99:5549,0,7370 8 7217837 rs3989701 A C 4672.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.763;ClippingRankSum=0;DB;DP=512;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.5;MQ=50.97;MQRankSum=-14.356;QD=9.13;ReadPosRankSum=-2.063;SOR=0.952 GT:AD:DP:GQ:PL 0/1:307,205:512:99:4701,0,7205 8 7218621 rs3989699 C G 5130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.831;ClippingRankSum=0;DB;DP=473;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.5;MQ=57.98;MQRankSum=-7.533;QD=10.87;ReadPosRankSum=3.116;SOR=0.562 GT:AD:DP:GQ:PL 0/1:272,200:472:99:5159,0,7293 8 7218632 rs3989698 C T 4788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.261;ClippingRankSum=0;DB;DP=508;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.5;MQ=56.93;MQRankSum=-4.894;QD=9.45;ReadPosRankSum=3.555;SOR=0.474 GT:AD:DP:GQ:PL 0/1:303,204:507:99:4817,0,7534 8 7218752 rs3989697 G C 4048.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.701;ClippingRankSum=0;DB;DP=527;ExcessHet=3.0103;FS=4.516;MLEAC=1;MLEAF=0.5;MQ=51.38;MQRankSum=-17.764;QD=7.71;ReadPosRankSum=1.034;SOR=1.064 GT:AD:DP:GQ:PL 0/1:362,163:525:99:4077,0,9575 8 7272594 rs201824968 A G 135.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.5;MQ=26.82;MQRankSum=0.678;QD=4.53;ReadPosRankSum=0.587;SOR=0.124 GT:AD:DP:GQ:PL 0/1:22,8:30:99:164,0,603 8 7308386 rs1042797 T C 3030.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=4.276;MLEAC=1;MLEAF=0.5;MQ=50.7;MQRankSum=-12.66;QD=11.93;ReadPosRankSum=-0.134;SOR=0.978 GT:AD:DP:GQ:PL 0/1:120,134:254:99:3059,0,2885 8 7308729 rs2294141 G C 1367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.012;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.5;MQ=59.14;MQRankSum=-2.267;QD=9.06;ReadPosRankSum=-1.98;SOR=0.56 GT:AD:DP:GQ:PL 0/1:87,64:151:99:1396,0,2057 8 7320265 rs138861652 G A 682.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.835;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.5;MQ=28.64;MQRankSum=-1.202;QD=4.77;ReadPosRankSum=0.417;SOR=0.33 GT:AD:DP:GQ:PL 0/1:106,37:143:99:711,0,2835 8 7398538 . C G 934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.612;ClippingRankSum=0;DP=212;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.5;MQ=41.7;MQRankSum=-2.653;QD=4.41;ReadPosRankSum=-0.188;SOR=0.953 GT:AD:DP:GQ:PL 0/1:153,59:212:99:963,0,3374 8 7398772 rs199646858 T G 203.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.266;ClippingRankSum=-0;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=-0;QD=11.32;ReadPosRankSum=-0;SOR=0.693 GT:AD:DP:GQ:PL 0/1:9,9:18:99:232,0,232 8 7673126 rs200631345 C A 50.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=0;QD=3.17;ReadPosRankSum=0.516;SOR=0.138 GT:AD:DP:GQ:PL 0/1:12,4:16:79:79,0,333 8 7686323 rs201085281 G A 670.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.384;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.5;MQ=36.32;MQRankSum=-1.962;QD=4.09;ReadPosRankSum=2.356;SOR=0.92 GT:AD:DP:GQ:PL 0/1:119,45:164:99:699,0,2560 8 7686397 rs146195936 T C 200.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.5;MQ=30.86;MQRankSum=-1.331;QD=2.75;ReadPosRankSum=0.178;SOR=1.12 GT:AD:DP:GQ:PL 0/1:57,16:73:99:229,0,1530 8 7694034 rs202183310 A G 235.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.787;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.15;MQRankSum=-0.583;QD=3.8;ReadPosRankSum=0.721;SOR=0.608 GT:AD:DP:GQ:PL 0/1:49,13:62:99:264,0,1527 8 7698603 rs144325550 C T 535.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.092;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=30.04;MQRankSum=0.69;QD=4.7;ReadPosRankSum=-0.84;SOR=0.593 GT:AD:DP:GQ:PL 0/1:83,31:114:99:564,0,2368 8 7698610 rs140952426 G A 258.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.488;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.01;MQRankSum=-1.751;QD=2.7;ReadPosRankSum=0.416;SOR=0.768 GT:AD:DP:GQ:PL 0/1:77,19:96:99:287,0,2415 8 7718187 rs3177011 T G 2037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.5;MQ=48.37;MQRankSum=-0.457;QD=10.4;ReadPosRankSum=-0.371;SOR=0.944 GT:AD:DP:GQ:PL 0/1:106,90:196:99:2066,0,2421 8 7718266 rs3860876 A T 4432.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.42;QD=29.55;SOR=1.209 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4461,450,0 8 8176221 rs13269488 C T 5731.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.173 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5760,597,0 8 8176387 rs143409664 C CGGGGCG 1737.73 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.97;SOR=7.276 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1775,123,0 8 8176554 rs12549973 C T 3635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.442;SOR=0.71 GT:AD:DP:GQ:PL 0/1:137,149:286:99:3664,0,3278 8 8176825 rs6601691 A G 4237.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.626 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4266,418,0 8 8234868 rs59372311 C CGCCGCT 5854.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=13.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.4;ReadPosRankSum=1.281;SOR=1.002 GT:AD:DP:GQ:PL 0/1:140,147:287:99:5892,0,7529 8 8235523 rs55993234 G A 2668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=8.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.529;SOR=1.2 GT:AD:DP:GQ:PL 0/1:115,115:230:99:2697,0,2809 8 8559898 rs11995449 G A 1778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.218;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.327;SOR=0.586 GT:AD:DP:GQ:PL 0/1:79,71:150:99:1807,0,1950 8 8560602 rs2280560 C T 4304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.754;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.03;SOR=0.704 GT:AD:DP:GQ:PL 0/1:192,184:376:99:4333,0,5176 8 8747894 rs429433 A G 6255.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6284,615,0 8 8749729 rs3748141 G C 3865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.62;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=7.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=0.175;SOR=0.723 GT:AD:DP:GQ:PL 0/1:124,148:272:99:3894,0,3296 8 8750467 rs1062988 A G 3091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.298;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0;QD=11.28;ReadPosRankSum=2.838;SOR=0.663 GT:AD:DP:GQ:PL 0/1:136,138:274:99:3120,0,2925 8 8860620 rs2288672 T C 4413.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4442,423,0 8 8869035 rs9650628 C G 530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-0.428;SOR=0.46 GT:AD:DP:GQ:PL 0/1:23,19:42:99:559,0,673 8 8869199 rs9650616 T G 1155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.253;SOR=0.775 GT:AD:DP:GQ:PL 0/1:60,56:116:99:1184,0,1348 8 8869277 rs28665409 G A 815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.246;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.118;SOR=0.404 GT:AD:DP:GQ:PL 0/1:33,38:71:99:844,0,819 8 8887542 rs140242735 TAAC T 2076.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.962;QD=20.36;ReadPosRankSum=0.838;SOR=0.871 GT:AD:DP:GQ:PL 0/1:48,54:102:99:2114,0,1852 8 9564437 rs7006985 A G 5266.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5295,545,0 8 9577940 rs6601360 T C 6946.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6975,684,0 8 9619159 . G GA 63.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.78;ReadPosRankSum=0.134;SOR=0.644 GT:AD:DP:GQ:PL 0/1:69,13:90:99:101,0,1392 8 10285825 rs10903326 T G 5204.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5233,500,0 8 10383226 rs4521726 C G 6828.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6857,672,0 8 10390452 rs4406360 C T 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.192;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=0.268;SOR=0.571 GT:AD:DP:GQ:PL 0/1:90,80:170:99:1956,0,2147 8 10396054 rs6601483 A C 1921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.507;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-2.383;SOR=0.662 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1950,0,1533 8 10411438 rs35201635 AT A 522.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.073;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.871;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.789;QD=5.81;ReadPosRankSum=0.352;SOR=1.078 GT:AD:DP:GQ:PL 0/1:56,34:92:99:560,0,1316 8 10464604 rs117007660 T C 3279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.62;ReadPosRankSum=-0.425;SOR=0.46 GT:AD:DP:GQ:PL 0/1:88,122:210:99:3308,0,2168 8 10464755 rs55642448 C T 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.36;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=5.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.951;SOR=1.053 GT:AD:DP:GQ:PL 0/1:133,100:233:99:2405,0,3543 8 10464885 rs56382513 T C 4171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.22;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=1.026;QD=13.37;ReadPosRankSum=2.129;SOR=0.533 GT:AD:DP:GQ:PL 0/1:153,159:312:99:4200,0,4191 8 10465012 rs75797924 G A 4267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.916;ClippingRankSum=0;DB;DP=456;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-1.861;QD=9.44;ReadPosRankSum=-2.729;SOR=0.62 GT:AD:DP:GQ:PL 0/1:242,210:452:99:4296,0,6840 8 10465097 rs4354268 C T 4727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.106;ClippingRankSum=0;DB;DP=481;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-2.847;QD=9.97;ReadPosRankSum=-0.249;SOR=0.621 GT:AD:DP:GQ:PL 0/1:253,221:474:99:4756,0,7704 8 10465748 rs11783478 T C 3297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.767;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=1.43;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-1.09;QD=11.78;ReadPosRankSum=1.97;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,127:280:99:0|1:10465748_T_C:3326,0,3891 8 10465771 rs11785822 G T 10113.8 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=36.78;SOR=0.7 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,275:275:99:1|1:10465748_T_C:10142,840,0 8 10466482 rs13267180 G A 2871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.37;SOR=0.533 GT:AD:DP:GQ:PL 0/1:174,129:303:99:2900,0,4690 8 10467160 rs62490855 G A 2910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=1.451;SOR=0.71 GT:AD:DP:GQ:PL 0/1:124,117:241:99:2939,0,3316 8 10467207 rs4840498 C A 7143.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7172,682,0 8 10467589 rs9657518 T C 5436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.4;ReadPosRankSum=-1.325;SOR=0.616 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,144:254:99:0|1:10467589_T_C:5465,0,4186 8 10467604 rs74366179 C A 5418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=1.653;QD=21.33;ReadPosRankSum=-2.005;SOR=0.565 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,146:254:99:0|1:10467589_T_C:5447,0,4214 8 10467637 . T TCCTCTAACTGCACCCTCTCTTCTTGCAGCCCTTCTATTACTTTAGTCC 4952.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0;DP=259;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.5;MQ=59.67;MQRankSum=-2.837;QD=19.42;ReadPosRankSum=-4.078;SOR=0.583 GT:AD:DP:GQ:PL 0/1:145,110:255:99:4990,0,5751 8 10468172 rs4840502 G A 5798.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5827,569,0 8 10469030 rs62490856 G A 3523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.77;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=0.696;SOR=0.671 GT:AD:DP:GQ:PL 0/1:159,143:302:99:3552,0,4319 8 10469233 rs35602868 A G 3300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=4.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-1.431;SOR=0.615 GT:AD:DP:GQ:PL 0/1:135,134:269:99:3329,0,3448 8 10469340 rs57819090 G A 2737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-1.117;SOR=0.63 GT:AD:DP:GQ:PL 0/1:148,116:264:99:2766,0,3650 8 10469817 rs6996950 G A 6139.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6168,599,0 8 10470068 rs74990397 C T 3016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.422;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-1.266;SOR=0.793 GT:AD:DP:GQ:PL 0/1:149,122:271:99:3045,0,3667 8 10474110 rs62490859 C T 2420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.104;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.805;SOR=0.654 GT:AD:DP:GQ:PL 0/1:119,112:231:99:2449,0,2691 8 10530218 rs11250058 C T 3015.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3044,308,0 8 10532355 rs4841419 T C 3870.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=1.17 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3899,390,0 8 11142389 rs3021505 C CG 1533.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-0.673;SOR=0.707 GT:AD:DP:GQ:PL 0/1:80,63:143:99:1571,0,2116 8 11162496 rs2164272 A C 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.845;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-0.431;SOR=0.881 GT:AD:DP:GQ:PL 0/1:71,69:140:99:1822,0,1604 8 11188743 rs13260331 C T 13646.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.445;ClippingRankSum=0;DB;DP=734;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=-0.544;QD=18.59;ReadPosRankSum=1.215;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:369,365:734:99:0|1:11188743_C_T:13675,0,18553 8 11188752 rs6990563 G A 14058.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.93;ClippingRankSum=0;DB;DP=759;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-0.302;QD=18.52;ReadPosRankSum=0.937;SOR=0.732 GT:AD:DP:GQ:PGT:PID:PL 0/1:383,376:759:99:0|1:11188743_C_T:14087,0,18938 8 11189316 rs2736269 G C 6665.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.318;ClippingRankSum=0;DB;DP=557;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.5;MQ=51.52;MQRankSum=-19.843;QD=11.97;ReadPosRankSum=-3.781;SOR=0.912 GT:AD:DP:GQ:PL 0/1:315,242:557:99:6694,0,8194 8 11189488 rs12681987 T C 8309.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.975;ClippingRankSum=0;DB;DP=713;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=53.7;MQRankSum=-19.282;QD=12.46;ReadPosRankSum=-0.159;SOR=0.742 GT:AD:DP:GQ:PL 0/1:346,321:712:99:8338,0,8518 8 11189529 rs62488716 T C 403.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.722;ClippingRankSum=0;DB;DP=733;ExcessHet=3.0103;FS=8.53;MLEAC=1;MLEAF=0.5;MQ=50.99;MQRankSum=-15.394;QD=0.55;ReadPosRankSum=-2.878;SOR=1.511 GT:AD:DP:GQ:PL 0/1:635,97:732:99:432,0,23605 8 11189535 rs12681991 T C 11731.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.976;ClippingRankSum=0;DB;DP=754;ExcessHet=3.0103;FS=2.45;MLEAC=1;MLEAF=0.5;MQ=50.87;MQRankSum=-24.176;QD=15.56;ReadPosRankSum=0.451;SOR=0.73 GT:AD:DP:GQ:PL 0/1:351,403:754:99:11760,0,8294 8 11189591 rs62488717 C T 1517.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.542;ClippingRankSum=0;DB;DP=745;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.97;MQRankSum=-16.967;QD=2.04;ReadPosRankSum=5.778;SOR=0.657 GT:AD:DP:GQ:PL 0/1:594,149:743:99:1546,0,15738 8 11301601 rs3021512 G C 3137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.064;SOR=0.829 GT:AD:DP:GQ:PL 0/1:188,134:322:99:3166,0,4911 8 11301753 rs3021513 A C 11828.8 PASS AC=2;AF=1;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.29;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,345:345:99:11857,1035,0 8 11406593 rs3816668 T C 1694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.975;SOR=0.631 GT:AD:DP:GQ:PL 0/1:61,70:131:99:1723,0,1373 8 11414237 rs2306234 T C 3395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.871;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.073;SOR=0.737 GT:AD:DP:GQ:PL 0/1:153,139:292:99:3424,0,3637 8 11614575 rs3729856 A G 3458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.342;SOR=0.805 GT:AD:DP:GQ:PL 0/1:169,144:313:99:3487,0,4143 8 11640784 rs8191642 A G 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.1;ReadPosRankSum=-0.395;SOR=0.688 GT:AD:DP:GQ:PL 0/1:78,47:125:99:916,0,1812 8 11643459 rs8191663 C T 777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.004;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=6.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-1.316;SOR=1.568 GT:AD:DP:GQ:PL 0/1:49,30:79:99:806,0,1310 8 11666218 rs71711801 GTCCCAC G 5787.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.63;MQRankSum=0.423;QD=33.85;ReadPosRankSum=-1.481;SOR=0.729 GT:AD:DP:GQ:PL 1/1:2,169:171:99:5825,449,0 8 11683653 rs904011 T C 3432.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3461,342,0 8 11687938 rs1293313 G C 2353.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.32 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2382,248,0 8 11705342 rs1736088 G C 5360.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=29.13;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5389,551,0 8 11706581 rs13332 T G 3870.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.53;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3899,357,0 8 11832079 rs10108075 A G 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.451;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=1.459;SOR=0.614 GT:AD:DP:GQ:PL 0/1:71,68:139:99:1683,0,1732 8 11970652 rs200401540 C T 1830.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.36;QD=28.17;SOR=1.758 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1859,195,0 8 11994957 rs12543578 T C 5497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.177;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=6.103;MLEAC=1;MLEAF=0.5;MQ=59.54;MQRankSum=0.078;QD=17.68;ReadPosRankSum=0.748;SOR=0.785 GT:AD:DP:GQ:PL 0/1:121,190:311:99:5526,0,2973 8 11995274 rs71511006 G A 6174.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=10.148;MLEAC=2;MLEAF=1;MQ=52.8;MQRankSum=3.231;QD=29.69;ReadPosRankSum=0.597;SOR=0.411 GT:AD:DP:GQ:PL 1/1:3,205:208:99:6203,489,0 8 11995484 rs74614551 C T 3864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.918;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=4.487;MLEAC=1;MLEAF=0.5;MQ=50.86;MQRankSum=-2.649;QD=15.58;ReadPosRankSum=-2.081;SOR=0.589 GT:AD:DP:GQ:PL 0/1:89,159:250:99:3893,0,1707 8 12041190 rs146245204 C T 600.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.73;QD=30.04;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,20:20:60:629,60,0 8 12042880 rs142379100 T C 3067.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.085;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.98;MQRankSum=-2.518;QD=25.78;ReadPosRankSum=3.782;SOR=1.066 GT:AD:DP:GQ:PL 1/1:2,117:119:99:3096,308,0 8 12043039 . G A 64.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.097;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=13.389;MLEAC=1;MLEAF=0.5;MQ=25.43;MQRankSum=0.332;QD=1.51;ReadPosRankSum=-2.713;SOR=0.037 GT:AD:DP:GQ:PL 0/1:35,8:43:93:93,0,905 8 12043877 rs200005976 A T 856.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.007;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27.03;MQRankSum=-0.787;QD=5.42;ReadPosRankSum=-0.312;SOR=0.134 GT:AD:DP:GQ:PL 0/1:115,43:158:99:885,0,3172 8 12044201 rs150400095 A G 3886.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.167;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.93;MQRankSum=-0.797;QD=25.74;ReadPosRankSum=0.575;SOR=2.318 GT:AD:DP:GQ:PL 0/1:37,114:151:99:3915,0,721 8 12044217 rs201723492 G C 1537.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.96;MQRankSum=-1.04;QD=11.74;ReadPosRankSum=-1.529;SOR=0.593 GT:AD:DP:GQ:PL 0/1:69,62:131:99:1566,0,2210 8 12044262 . G A 186.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.205;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=0;QD=2.83;ReadPosRankSum=-1.065;SOR=0.065 GT:AD:DP:GQ:PL 0/1:53,13:66:99:215,0,1458 8 12044307 . T A 41.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=0;QD=2.2;ReadPosRankSum=-0.752;SOR=0.093 GT:AD:DP:GQ:PL 0/1:15,4:19:70:70,0,419 8 12044328 rs138175362 T C 456.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=32.63;SOR=5.421 GT:AD:DP:GQ:PL 1/1:0,14:14:42:485,42,0 8 12044345 . GCAC G 61.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.076;ClippingRankSum=-0;DP=12;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=-0;QD=5.14;ReadPosRankSum=1.543;SOR=0.148 GT:AD:DP:GQ:PGT:PID:PL 0/1:9,3:12:99:0|1:12044345_GCAC_G:99,0,369 8 12044360 . G A 76.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.235;ClippingRankSum=-0;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=-0;QD=7.68;ReadPosRankSum=1.331;SOR=0.223 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,3:10:99:0|1:12044345_GCAC_G:105,0,285 8 12283473 . C T 137.9 SNP_MQ_filter AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.79;QD=27.58;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,5:5:15:166,15,0 8 12286158 rs200539718 A T 769.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.226;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.5;MQ=34.97;MQRankSum=-1.006;QD=3.77;ReadPosRankSum=-0.034;SOR=0.539 GT:AD:DP:GQ:PL 0/1:156,48:204:99:798,0,3916 8 12287940 . C T 1156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0;DP=389;ExcessHet=3.0103;FS=5.268;MLEAC=1;MLEAF=0.5;MQ=41.15;MQRankSum=-2.273;QD=2.98;ReadPosRankSum=1.553;SOR=1.018 GT:AD:DP:GQ:PL 0/1:309,79:388:99:1185,0,7688 8 12291593 rs146321506 C A 4906.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.265;ClippingRankSum=0;DB;DP=484;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.5;MQ=38.35;MQRankSum=-2.033;QD=10.14;ReadPosRankSum=-1.489;SOR=0.409 GT:AD:DP:GQ:PL 0/1:240,244:484:99:4935,0,5445 8 12878637 rs528255 A G 4344.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4373,435,0 8 12878677 rs622106 T C 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.24;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=0.392;SOR=0.596 GT:AD:DP:GQ:PL 0/1:63,76:139:99:1959,0,1551 8 12878807 rs3739310 T G 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.588;SOR=0.839 GT:AD:DP:GQ:PL 0/1:96,101:197:99:2388,0,2138 8 12879062 rs503550 T C 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.498;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-1.069;SOR=0.534 GT:AD:DP:GQ:PL 0/1:99,67:166:99:1714,0,2332 8 12879099 rs502882 G A 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.22;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=6.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=1.473;SOR=0.475 GT:AD:DP:GQ:PL 0/1:100,70:170:99:1708,0,2684 8 12879198 rs34995506 A T 2171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.849;SOR=0.738 GT:AD:DP:GQ:PL 0/1:78,90:168:99:2200,0,1843 8 12879334 rs608909 T C 2407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.124;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=4.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.05;ReadPosRankSum=-0.561;SOR=0.786 GT:AD:DP:GQ:PL 0/1:59,91:150:99:2436,0,1427 8 12879539 rs608052 A G 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=1.751;SOR=0.737 GT:AD:DP:GQ:PL 0/1:34,35:69:99:925,0,818 8 12948951 rs609020 A G 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.913;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.056;SOR=0.696 GT:AD:DP:GQ:PL 0/1:41,38:79:99:1026,0,1063 8 12950110 rs7829535 G A 1921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=-2.231;QD=10.8;ReadPosRankSum=0.253;SOR=0.7 GT:AD:DP:GQ:PL 0/1:90,88:178:99:1950,0,2196 8 12957475 rs532841 C T 2631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.24;SOR=0.585 GT:AD:DP:GQ:PL 0/1:103,103:206:99:2660,0,2767 8 12958025 rs3739298 C A 5137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.779;ClippingRankSum=0;DB;DP=490;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-1.847;SOR=0.705 GT:AD:DP:GQ:PL 0/1:266,222:488:99:5166,0,6383 8 12960281 rs2280335 T C 771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.35;ReadPosRankSum=-0.485;SOR=0.588 GT:AD:DP:GQ:PL 0/1:66,39:105:99:800,0,1630 8 12973078 rs34462909 T C 802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.742;QD=6.37;ReadPosRankSum=0.044;SOR=0.665 GT:AD:DP:GQ:PL 0/1:80,46:126:99:831,0,1813 8 13356802 rs3816747 G A 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=0.016;SOR=0.9 GT:AD:DP:GQ:PL 0/1:116,74:190:99:1747,0,3047 8 13356818 rs11203494 T C 7795.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.77;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,212:212:99:7824,640,0 8 13356819 rs11203495 T G 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.304;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-0.98;SOR=0.819 GT:AD:DP:GQ:PL 0/1:123,89:212:99:2253,0,3054 8 13357587 rs1383942 G A 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.262;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-1.017;SOR=0.517 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1350,0,1663 8 13424583 rs13273355 C T 2533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.254;SOR=0.693 GT:AD:DP:GQ:PL 0/1:106,102:208:99:2562,0,2731 8 13425353 rs11203497 T A 5038.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5067,506,0 8 14095199 rs13269000 T C 1602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.405;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.866;QD=14.57;ReadPosRankSum=0.828;SOR=0.743 GT:AD:DP:GQ:PL 0/1:46,64:110:99:1631,0,1046 8 15095085 rs4831331 C G 3994.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4023,390,0 8 15978063 rs4338104 C T 5085.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=1.237 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5114,536,0 8 15978125 . TAAA T 851.73 PASS AC=1;AF=0.5;AN=2;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=65.52;SOR=0.784 GT:AD:DP:GQ:PL 0/1:0,13:44:35:686,0,35 8 16859398 rs10448135 C G 9842.77 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,333:333:99:9871,998,0 8 16942837 rs2285264 C T 618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.891;SOR=0.518 GT:AD:DP:GQ:PL 0/1:29,30:59:99:647,0,674 8 17230644 rs7388581 G C 5583.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5612,589,0 8 17270764 rs76718364 C A 5825.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.47;SOR=0.708 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,131:131:99:1|1:17270764_C_A:5854,394,0 8 17270770 rs75437306 T C 6279.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.52;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,135:135:99:1|1:17270764_C_A:6308,427,0 8 17270787 rs67972978 A G 6517.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.88;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,152:152:99:1|1:17270764_C_A:6546,457,0 8 17406183 rs737039 A G 765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.267;SOR=1.018 GT:AD:DP:GQ:PL 0/1:36,35:71:99:794,0,753 8 17406367 rs11373918 GT G 262.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.51;ReadPosRankSum=-0.282;SOR=0.963 GT:AD:DP:GQ:PL 0/1:18,17:39:99:300,0,461 8 17486282 rs2229084 T C 3455.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3484,365,0 8 17500223 rs4705 T C 760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.591;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=0.713;SOR=0.693 GT:AD:DP:GQ:PL 0/1:48,34:82:99:789,0,1172 8 17503431 rs1043883 G C 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.175;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.21;ReadPosRankSum=-0.101;SOR=0.603 GT:AD:DP:GQ:PL 0/1:62,89:151:99:2325,0,1438 8 17503501 rs12550193 G A 1597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.479;SOR=0.725 GT:AD:DP:GQ:PL 0/1:98,70:168:99:1626,0,2427 8 17541999 rs2979792 T C 939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0;QD=8.17;ReadPosRankSum=-0.949;SOR=0.778 GT:AD:DP:GQ:PL 0/1:69,46:115:99:968,0,1704 8 17611886 rs2979788 G A 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.859;QD=10.79;ReadPosRankSum=0.7;SOR=0.676 GT:AD:DP:GQ:PL 0/1:80,61:141:99:1549,0,2233 8 17611959 rs17690844 T G 3269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.401;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.01;ReadPosRankSum=0.213;SOR=0.879 GT:AD:DP:GQ:PL 0/1:64,108:172:99:3298,0,1561 8 17612456 rs11203910 C T 2407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=0.373;SOR=0.576 GT:AD:DP:GQ:PL 0/1:71,96:167:99:2436,0,1830 8 17612694 rs73206291 C G 1646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.33;ReadPosRankSum=-0.176;SOR=0.704 GT:AD:DP:GQ:PL 0/1:37,58:95:99:1675,0,1022 8 17612875 rs3739407 A G 2103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.578;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.61;ReadPosRankSum=-0.783;SOR=0.91 GT:AD:DP:GQ:PL 0/1:59,85:144:99:2132,0,1278 8 17739538 rs3739406 T C 3864.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=1.142 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3893,363,0 8 17743020 rs484373 G A 2644.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.99;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2673,293,0 8 17796382 rs412750 A G 5767.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.37;SOR=0.822 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,130:130:99:1|1:17796382_A_G:5796,391,0 8 17796383 rs454755 C T 5767.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.37;SOR=0.822 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,130:130:99:1|1:17796382_A_G:5796,391,0 8 17814915 rs208753 A G 2440.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2469,225,0 8 17817657 rs34771733 A C 837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.59;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=0.349;SOR=0.521 GT:AD:DP:GQ:PL 0/1:39,37:76:99:866,0,959 8 17819572 rs3780103 C T 2767.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2796,290,0 8 17827260 rs3214087 A AC 2462.73 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=36.76;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2500,202,0 8 17918934 rs10103355 A G 3027.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3056,290,0 8 17942204 rs13263632 C T 2669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.492;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-0.488;SOR=0.717 GT:AD:DP:GQ:PL 0/1:121,109:230:99:2698,0,3351 8 18077007 rs10106882 G C 1464.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.13;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1493,161,0 8 18257795 rs1041983 C T 2279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-0.391;SOR=0.744 GT:AD:DP:GQ:PL 0/1:77,89:166:99:2308,0,1978 8 18258103 rs1799930 G A 2358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=5.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.74;ReadPosRankSum=0.639;SOR=0.61 GT:AD:DP:GQ:PL 0/1:69,91:160:99:2387,0,1735 8 18258316 rs1208 G A 3604.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3633,344,0 8 18413875 rs2260920 A G 2847.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2876,280,0 8 18457957 rs2932001 A G 1525.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.43;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1554,180,0 8 18729817 rs7016219 G A 8249.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.08;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,183:183:99:1|1:18729817_G_A:8278,560,0 8 18729818 rs7003060 T G 8249.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=0.842 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,185:185:99:1|1:18729817_G_A:8278,560,0 8 19192192 rs17128221 T C 1565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.05;SOR=0.761 GT:AD:DP:GQ:PL 0/1:59,66:125:99:1594,0,1471 8 19221700 rs34608771 G A 2426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-1.429;SOR=0.694 GT:AD:DP:GQ:PL 0/1:109,107:216:99:2455,0,2732 8 19316086 rs12155539 G A 5043.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5072,522,0 8 19362768 rs7017776 C T 5665.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5694,568,0 8 19689633 rs4434638 T C 1146.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1175,111,0 8 19819724 rs328 C G 669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=1.701;SOR=0.532 GT:AD:DP:GQ:PL 0/1:40,34:74:99:698,0,965 8 19822810 rs11570891 C T 987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.168;SOR=0.749 GT:AD:DP:GQ:PL 0/1:58,48:106:99:1016,0,1396 8 20036018 rs201530602 G GAA 558.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=0.266;SOR=0.628 GT:AD:DP:GQ:PL 0/1:17,20:47:99:596,0,510 8 20036713 rs1390938 A G 5267.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.72;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5296,482,0 8 20036827 rs2270637 C G 2031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=-0.487;SOR=0.609 GT:AD:DP:GQ:PL 0/1:146,97:243:99:2060,0,3651 8 20038466 rs2270641 T G 2401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.784;SOR=0.619 GT:AD:DP:GQ:PL 0/1:88,100:188:99:2430,0,2142 8 20068163 rs7460146 T G 2313.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=1.194 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2342,228,0 8 20110641 rs2645386 C T 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.166;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.616;SOR=0.655 GT:AD:DP:GQ:PL 0/1:137,118:255:99:2668,0,3684 8 21767275 rs2242240 C G 4556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.791;ClippingRankSum=0;DB;DP=376;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.884;SOR=0.539 GT:AD:DP:GQ:PL 0/1:195,180:375:99:4585,0,4851 8 21827833 rs4871903 A G 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.941;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.331;QD=13.75;ReadPosRankSum=-0.061;SOR=0.564 GT:AD:DP:GQ:PL 0/1:57,66:123:99:1719,0,1471 8 21833965 rs2306641 C T 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-2.622;SOR=0.659 GT:AD:DP:GQ:PL 0/1:104,112:216:99:2389,0,2388 8 21846586 rs2306646 G C 1118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.177;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-1.113;SOR=1.085 GT:AD:DP:GQ:PL 0/1:50,46:96:99:1147,0,1162 8 21862551 rs1058486 A G 1286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.87;QD=9.26;ReadPosRankSum=0.754;SOR=0.668 GT:AD:DP:GQ:PL 0/1:78,61:139:99:1315,0,1851 8 21927460 rs7386762 C G 4915.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4944,507,0 8 21955116 rs11352 C T 6694.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6723,680,0 8 21956096 rs145516741 G A 9358.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.53;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,215:215:99:1|1:21956096_G_A:9387,647,0 8 21956108 rs35497596 A G 9164.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.93;SOR=0.93 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,204:204:99:1|1:21956096_G_A:9193,626,0 8 21964802 rs1552286 C T 1936.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1965,192,0 8 21966700 rs57316099 GC G 7575.73 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.56;SOR=1.24 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,170:170:99:1|1:21966700_GC_G:7613,512,0 8 21966707 rs58343576 CG C 7766.73 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.13;SOR=1.185 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,176:176:99:1|1:21966700_GC_G:7804,530,0 8 21974516 rs201956860 C T 7479.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,266:266:99:7508,796,0 8 21978273 rs377059643 G A 7960.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7989,762,0 8 21984650 rs12675745 A G 9221.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9250,882,0 8 21984945 rs12675375 C T 8082.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,260:260:99:8111,780,0 8 21997738 rs35574275 A T 4083.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.523 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4112,402,0 8 22021037 rs4715 C A 3063.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3092,309,0 8 22021517 rs1124 G A 6098.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6127,605,0 8 22021883 rs7592 G A 5873.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5902,555,0 8 22021934 rs1139547 G A 5924.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5953,576,0 8 22079355 rs4872422 A G 5760.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=1.224 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5789,536,0 8 22084503 rs11547656 C T 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.177;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.353;SOR=0.581 GT:AD:DP:GQ:PL 0/1:79,89:168:99:2246,0,1935 8 22105502 rs1126677 T C 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=5.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-1.299;SOR=0.612 GT:AD:DP:GQ:PL 0/1:83,70:153:99:1679,0,2037 8 22424244 rs2272716 T C 2111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.772;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.641;SOR=0.952 GT:AD:DP:GQ:PL 0/1:77,83:160:99:2140,0,1867 8 22428658 rs2449331 T C 8525.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.024 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8554,828,0 8 22428708 rs1047030 A G 2567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.742;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.014;SOR=0.782 GT:AD:DP:GQ:PL 0/1:122,109:231:99:2596,0,2718 8 22428751 rs55893847 C G 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.953;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.265;SOR=1.026 GT:AD:DP:GQ:PL 0/1:90,62:152:99:1679,0,2393 8 22442661 rs2294047 A G 3378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.385;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.225;SOR=0.618 GT:AD:DP:GQ:PL 0/1:133,137:270:99:3407,0,3135 8 22481449 rs1871900 A G 2431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.56;SOR=0.838 GT:AD:DP:GQ:PL 0/1:95,103:198:99:2460,0,2263 8 22570907 rs35121552 GT G 1296.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.5;MQ=60.7;MQRankSum=1.512;QD=16.84;ReadPosRankSum=-1.382;SOR=0.541 GT:AD:DP:GQ:PL 0/1:23,54:77:99:1334,0,497 8 22570935 rs1047406 T C 1806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.869;QD=14.23;ReadPosRankSum=1.713;SOR=0.661 GT:AD:DP:GQ:PL 0/1:51,76:127:99:1835,0,1069 8 22571018 rs1047398 A G 2297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.074;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.736;QD=13.13;ReadPosRankSum=-0.43;SOR=0.706 GT:AD:DP:GQ:PL 0/1:75,100:177:99:2326,0,1570 8 22584718 rs1129474 T C 1918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.419;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.449;SOR=0.659 GT:AD:DP:GQ:PL 0/1:70,77:147:99:1947,0,1623 8 22926313 rs1129424 G A 10151.8 PASS AC=2;AF=1;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,340:340:99:10180,1020,0 8 22960704 rs6557616 G C 3573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=0.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.701;SOR=0.707 GT:AD:DP:GQ:PL 0/1:179,166:345:99:3602,0,4167 8 23001988 rs1133782 A G 2132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.019;SOR=0.707 GT:AD:DP:GQ:PL 0/1:90,81:171:99:2161,0,2419 8 23049292 rs2230229 C T 7034.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7063,712,0 8 23058220 rs20576 T G 2348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.875;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.45;ReadPosRankSum=-0.193;SOR=0.795 GT:AD:DP:GQ:PL 0/1:67,85:152:99:2377,0,1551 8 23104195 rs2294123 G T 1431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.261;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=11.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=1.637;SOR=0.184 GT:AD:DP:GQ:PL 0/1:44,55:99:99:1460,0,1314 8 23117643 rs2294125 T C 806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.965;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=4.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.487;SOR=1.318 GT:AD:DP:GQ:PL 0/1:50,31:81:99:835,0,1210 8 23147564 rs3808536 G A 6828.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6857,679,0 8 23148930 rs2272762 A G 6411.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.62;SOR=0.734 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,147:147:99:1|1:23148930_A_G:6440,445,0 8 23148940 rs2272761 G A 6458.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.94;SOR=0.821 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,147:147:99:1|1:23148930_A_G:6487,448,0 8 23150878 rs13530 T G 2921.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=27.56;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2950,317,0 8 23152334 rs15946 A G 4722.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4751,471,0 8 23167353 rs1063582 T G 6646.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6675,641,0 8 23186007 rs1051146 T C 6021.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6050,607,0 8 23190941 rs1010156 T C 5450.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5479,552,0 8 23225559 rs1063577 G A 2100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-0.587;SOR=0.629 GT:AD:DP:GQ:PL 0/1:87,86:173:99:2129,0,2095 8 23423669 rs2942194 A G 2631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.914;SOR=0.899 GT:AD:DP:GQ:PL 0/1:100,111:211:99:2660,0,2185 8 23423758 rs10992 G A 2012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.642;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=5.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-0.052;SOR=1.064 GT:AD:DP:GQ:PL 0/1:118,78:196:99:2041,0,3052 8 23429329 rs1047384 T C 2581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.768;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.555;SOR=0.591 GT:AD:DP:GQ:PL 0/1:126,104:230:99:2610,0,3024 8 23540417 rs11781886 C T 6540.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.421 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6569,648,0 8 23563908 rs61732911 A G 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=2.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.017;SOR=0.534 GT:AD:DP:GQ:PL 0/1:99,88:187:99:2104,0,2407 8 24171051 rs6996616 C T 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.283;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=5.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-2.349;SOR=0.382 GT:AD:DP:GQ:PL 0/1:78,83:161:99:1901,0,1752 8 24188844 rs2278467 T C 1474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-1.46;SOR=0.807 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1503,0,1430 8 24211278 rs7815643 C T 1971.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2000,213,0 8 24211331 rs7814768 G A 1975.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2004,204,0 8 24211884 rs10694022 A ATGTC 1825.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.049;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.09;ReadPosRankSum=0.551;SOR=1.467 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1863,149,0 8 24256470 rs2291577 C T 1333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.475;SOR=0.555 GT:AD:DP:GQ:PL 0/1:71,59:130:99:1362,0,1911 8 24261526 rs3765124 A G 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.107;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=5.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.933;SOR=0.358 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1010,0,1305 8 24350715 rs12547971 G A 1465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.003;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=5.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=0.342;SOR=0.438 GT:AD:DP:GQ:PL 0/1:71,63:134:99:1494,0,1714 8 24363599 rs118064439 A C 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.774;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=4.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=0.221;SOR=1.264 GT:AD:DP:GQ:PL 0/1:37,47:84:99:1219,0,728 8 24774683 rs196864 C A 5924.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5953,602,0 8 24775965 rs140175409 G A 1511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=0.862;SOR=0.557 GT:AD:DP:GQ:PL 0/1:88,63:151:99:1540,0,2379 8 24811064 rs11300136 AG A 6837.73 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=30.94;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6875,665,0 8 25158072 rs5890219 AT A 2634.73 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.42;QD=25.58;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2672,309,0 8 25159885 rs907157 G A 3114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.224;SOR=0.651 GT:AD:DP:GQ:PL 0/1:168,141:309:99:3143,0,4161 8 25181356 rs2666174 C T 4980.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5009,525,0 8 25182969 rs2666172 C T 5845.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5874,606,0 8 25203022 rs2468902 A G 6177.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6206,587,0 8 25222165 rs2271111 A G 864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=5.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=-0.697;SOR=0.786 GT:AD:DP:GQ:PL 0/1:53,41:94:99:893,0,1267 8 25230168 rs2271108 C T 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.179;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=0.461;SOR=0.664 GT:AD:DP:GQ:PL 0/1:76,99:175:99:2246,0,1911 8 25231117 rs3215159 C CT 802.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=4.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.207;SOR=0.414 GT:AD:DP:GQ:PL 0/1:34,37:71:99:840,0,656 8 25234858 rs2659585 A G 2955.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2984,304,0 8 25247821 rs113940021 TA T 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.148;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.737;SOR=0.852 GT:AD:DP:GQ:PL 0/1:23,39:73:99:761,0,416 8 25258442 rs3750194 C T 1402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.362;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-0.908;SOR=0.652 GT:AD:DP:GQ:PL 0/1:80,63:143:99:1431,0,1788 8 25267622 rs2709618 A G 1532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.617;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=1.468;SOR=1.022 GT:AD:DP:GQ:PL 0/1:84,67:151:99:1561,0,1911 8 25280800 rs6185 C G 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.421;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.87;ReadPosRankSum=-1.035;SOR=1.022 GT:AD:DP:GQ:PL 0/1:30,40:70:99:1069,0,648 8 25287397 rs1812594 T C 585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.957;SOR=0.438 GT:AD:DP:GQ:PL 0/1:21,26:47:99:614,0,463 8 25293858 rs2012592 C T 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=-1.092;SOR=1.262 GT:AD:DP:GQ:PL 0/1:25,36:61:99:924,0,616 8 25296930 rs2271112 C T 946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.092;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=1.197;SOR=0.628 GT:AD:DP:GQ:PL 0/1:50,44:94:99:975,0,1416 8 25317824 rs1506863 A T 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.947;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.792;SOR=0.453 GT:AD:DP:GQ:PL 0/1:71,71:142:99:1606,0,1876 8 25323777 rs10108752 T C 5194.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5223,524,0 8 25325730 rs11996213 T C 245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.626;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.23;ReadPosRankSum=0.186;SOR=1.089 GT:AD:DP:GQ:PL 0/1:33,14:47:99:274,0,808 8 25364834 rs3829009 A T 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.209;SOR=0.64 GT:AD:DP:GQ:PL 0/1:108,111:219:99:2452,0,2503 8 25364960 rs6990278 A G 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.187;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-1.62;SOR=0.566 GT:AD:DP:GQ:PL 0/1:83,77:160:99:1869,0,1949 8 25708267 rs10866845 T C 2482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=1.636;SOR=0.516 GT:AD:DP:GQ:PL 0/1:87,97:184:99:2511,0,2170 8 25744257 rs6557865 G A 5665.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5694,590,0 8 26481771 rs327222 T C 6211.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6240,635,0 8 26628028 rs1048101 A G 2162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.077;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.268;SOR=0.795 GT:AD:DP:GQ:PL 0/1:86,91:177:99:2191,0,2232 8 27145143 rs199649028 G A 3382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.705;SOR=0.544 GT:AD:DP:GQ:PL 0/1:109,135:244:99:3411,0,2901 8 27255128 rs1045510 T C 2710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.894;SOR=0.771 GT:AD:DP:GQ:PL 0/1:114,112:226:99:2739,0,2612 8 27255146 rs1045511 G A 2785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=1.829;SOR=0.794 GT:AD:DP:GQ:PL 0/1:131,122:253:99:2814,0,3109 8 27255263 rs1045512 A G 2479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.643;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.17;QD=11.48;ReadPosRankSum=1.396;SOR=0.574 GT:AD:DP:GQ:PL 0/1:124,92:216:99:2508,0,2924 8 27255325 rs2241650 C T 1371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.216;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.165;QD=10.01;ReadPosRankSum=-2.309;SOR=0.545 GT:AD:DP:GQ:PL 0/1:78,59:137:99:1400,0,1937 8 27277537 rs1030526 G A 2509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.412;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=5.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-1.108;SOR=1.043 GT:AD:DP:GQ:PL 0/1:114,104:218:99:2538,0,2863 8 27293865 rs7005936 C T 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.275;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=4.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=-0.324;SOR=0.378 GT:AD:DP:GQ:PL 0/1:50,34:84:99:784,0,1258 8 27308585 rs751019 A C 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.387;SOR=0.584 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1929,0,1839 8 27311703 rs1879184 T C 8310.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8339,822,0 8 27312040 rs10093964 C T 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.262;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-1.63;SOR=0.9 GT:AD:DP:GQ:PL 0/1:62,46:108:99:1119,0,1571 8 27312135 rs7007145 G A 1273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.02;SOR=0.665 GT:AD:DP:GQ:PL 0/1:56,55:111:99:1302,0,1363 8 27315876 rs1879182 A G 6826.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.266 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6855,687,0 8 27315900 rs1879181 A G 8372.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8401,839,0 8 27324822 rs891398 T C 1054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=0;SOR=0.808 GT:AD:DP:GQ:PL 0/1:73,51:124:99:1083,0,1818 8 27326838 rs139680977 AGG A 1465.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.201;QD=14.23;ReadPosRankSum=0.288;SOR=0.836 GT:AD:DP:GQ:PL 0/1:60,43:103:99:1503,0,2213 8 27369334 rs7816586 A G 1975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.573;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.18;ReadPosRankSum=-0.567;SOR=0.564 GT:AD:DP:GQ:PL 0/1:40,75:115:99:2004,0,794 8 27373923 rs4149243 T C 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=0.703;SOR=0.53 GT:AD:DP:GQ:PL 0/1:65,95:160:99:2175,0,1342 8 27396208 rs4149253 G A 1395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.327;SOR=0.899 GT:AD:DP:GQ:PL 0/1:50,62:112:99:1424,0,1069 8 27401964 rs1126452 A C 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.007;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=8.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.429;SOR=1.263 GT:AD:DP:GQ:PL 0/1:89,73:162:99:1830,0,2106 8 27509153 rs2246847 G A 2589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.877;SOR=0.534 GT:AD:DP:GQ:PL 0/1:119,112:231:99:2618,0,2783 8 27634064 rs4732748 C T 4878.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4907,489,0 8 27667969 rs2294092 C G 1495.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1524,141,0 8 27679981 rs3779620 T C 1705.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1734,162,0 8 27680576 rs727813 G T 1689.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1718,155,0 8 27690557 rs10113621 A C 1383.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.514 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,47:47:99:1|1:27690541_TA_T:1412,140,0 8 27729532 rs61737291 G A 5189.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5218,522,0 8 27737198 rs4732610 A G 7610.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7639,782,0 8 27767171 rs2726991 G A 2408.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.01;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2437,258,0 8 27779545 rs10103504 C T 8269.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8298,856,0 8 27880826 rs921597 C T 4085.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4114,399,0 8 27886903 rs9314357 C T 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.265;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=3.185;SOR=0.781 GT:AD:DP:GQ:PL 0/1:86,88:174:99:2081,0,1912 8 27887813 rs7817068 T C 628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.031;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=0.539;SOR=0.497 GT:AD:DP:GQ:PL 0/1:39,30:69:99:657,0,931 8 27918057 rs7817227 T C 3651.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3680,363,0 8 27925204 rs4732620 T C 1575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-0.608;SOR=0.625 GT:AD:DP:GQ:PL 0/1:78,75:153:99:1604,0,1842 8 27927849 rs6998705 C G 1618.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1647,159,0 8 28206275 rs1046511 G C 1426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.44;ReadPosRankSum=0.874;SOR=0.79 GT:AD:DP:GQ:PL 0/1:106,63:169:99:1455,0,2793 8 28286174 rs1055741 T G 2636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.606;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.157;SOR=0.655 GT:AD:DP:GQ:PL 0/1:130,120:250:99:2665,0,2865 8 28384712 rs2241802 A G 3379.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3408,342,0 8 28984042 rs3793435 T C 1157.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1186,123,0 8 29005093 rs6986672 A G 3201.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=1.458 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3230,314,0 8 29005128 rs13263819 A G 1771.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1800,162,0 8 29927300 rs6468093 C G 4938.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4967,480,0 8 29927321 rs6468094 A G 5033.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5062,491,0 8 29931375 rs986636 T C 3310.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.78;SOR=1.779 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3339,303,0 8 29989564 rs7844812 A G 5584.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5613,552,0 8 29996158 rs4733141 A G 6836.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6865,710,0 8 29996256 rs7813902 T C 6669.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.05;SOR=1.267 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,185:185:99:1|1:29996256_T_C:6698,556,0 8 30554006 rs8190996 G A 1368.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1397,135,0 8 30567423 . TA T 150.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.5;MQ=61.29;MQRankSum=-0.067;QD=10.05;ReadPosRankSum=0.951;SOR=0.7 GT:AD:DP:GQ:PL 0/1:6,9:20:60:188,0,60 8 30601805 rs2278092 C T 3603.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3632,372,0 8 30608976 rs2911690 C T 4343.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4372,444,0 8 30620840 rs11388922 G GT 3762.73 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3800,364,0 8 30695226 rs2720593 C T 4592.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4621,455,0 8 30924557 rs1800389 C T 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.793;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=1.287;SOR=0.782 GT:AD:DP:GQ:PL 0/1:66,67:133:99:1558,0,1812 8 30933816 rs370040831 CT C 109.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.105;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.96;ReadPosRankSum=-0.047;SOR=0.765 GT:AD:DP:GQ:PL 0/1:42,14:56:99:147,0,941 8 30958353 rs3087419 CT C 2249.73 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.11;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2287,249,0 8 30973957 rs1800392 G T 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.63;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-1.698;SOR=0.783 GT:AD:DP:GQ:PL 0/1:81,93:174:99:2059,0,1926 8 30999122 rs3024239 C T 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.404;SOR=0.761 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,90:174:99:0|1:30999122_C_T:2152,0,3215 8 30999123 rs2737335 G A 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.035;SOR=0.635 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,82:172:99:1|0:30999122_C_T:1934,0,3544 8 30999280 rs1801195 G T 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.036;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-0.156;SOR=0.681 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1327,0,1598 8 31024638 rs1801196 C T 1544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=7.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-1.256;SOR=0.932 GT:AD:DP:GQ:PL 0/1:86,68:154:99:1573,0,2106 8 32453358 rs3924999 G A 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=0.746;SOR=0.784 GT:AD:DP:GQ:PL 0/1:75,52:127:99:1041,0,1765 8 32505909 rs146965117 TAG T 52.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.656;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.39;ReadPosRankSum=-0.366;SOR=0.53 GT:AD:DP:GQ:PL 0/1:118,17:138:90:90,0,3967 8 33246538 rs16880849 A G 1771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.365;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.898;SOR=0.713 GT:AD:DP:GQ:PL 0/1:66,71:137:99:1800,0,1581 8 33246591 rs17855838 G C 2151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=0.683;SOR=0.666 GT:AD:DP:GQ:PL 0/1:72,83:155:99:2180,0,1801 8 33246685 rs16880852 G A 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-1.051;SOR=1.004 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1581,0,2060 8 33346630 rs201215286 G A 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.614;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.622;SOR=0.856 GT:AD:DP:GQ:PL 0/1:35,44:79:99:1065,0,660 8 33356074 rs6468171 A G 2253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.06;QD=11.05;ReadPosRankSum=-0.029;SOR=0.838 GT:AD:DP:GQ:PL 0/1:107,97:204:99:2282,0,2507 8 33369944 rs2304748 T C 2917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.662;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=1.183;SOR=0.711 GT:AD:DP:GQ:PL 0/1:88,113:201:99:2946,0,2030 8 33369994 rs3098657 A G 3147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.715;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=-0.667;SOR=0.668 GT:AD:DP:GQ:PL 0/1:86,120:206:99:3176,0,1938 8 33370014 rs78781527 G A 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=0.893;SOR=0.807 GT:AD:DP:GQ:PL 0/1:122,91:213:99:2152,0,3040 8 33416189 rs3735950 G A 883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.622;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.45;ReadPosRankSum=0.913;SOR=0.77 GT:AD:DP:GQ:PL 0/1:95,42:137:99:912,0,2361 8 33416222 rs3735951 C T 984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.98;ReadPosRankSum=0.844;SOR=0.593 GT:AD:DP:GQ:PL 0/1:93,48:141:99:1013,0,2310 8 33416303 rs35879627 G GA 855.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.211;QD=8.23;ReadPosRankSum=0.634;SOR=0.499 GT:AD:DP:GQ:PL 0/1:61,43:104:99:893,0,1213 8 36691189 rs10089594 C T 660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.087;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=0.946;SOR=0.483 GT:AD:DP:GQ:PL 0/1:37,30:67:99:689,0,896 8 36767024 rs28608091 T C 2053.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.38;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2082,223,0 8 37611414 . CT C 78.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.064;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.377;QD=1.79;ReadPosRankSum=2.329;SOR=0.612 GT:AD:DP:GQ:PL 0/1:34,10:53:99:116,0,832 8 37693302 rs10101560 T C 2881.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.31;SOR=1.754 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2910,252,0 8 37728031 rs61741611 C T 1471.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1500,156,0 8 37729795 . C A 2418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DP=205;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.538;SOR=0.565 GT:AD:DP:GQ:PL 0/1:101,104:205:99:2447,0,2367 8 37730368 rs12541651 G A 5509.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5538,542,0 8 37730456 rs7341564 G T 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=1.612;SOR=0.836 GT:AD:DP:GQ:PL 0/1:83,91:174:99:2250,0,2156 8 37985897 rs2843740 A G 7305.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.939 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7334,728,0 8 38003787 rs2720050 T C 4079.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.64;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4108,375,0 8 38005835 rs2229620 T C 5389.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5418,516,0 8 38066801 rs368933312 G A 2441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.477;SOR=0.827 GT:AD:DP:GQ:PL 0/1:102,96:198:99:2470,0,2528 8 38095662 rs2306899 C T 3372.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3401,348,0 8 38677322 rs34235313 C T 3711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.971;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=0.635;SOR=0.745 GT:AD:DP:GQ:PL 0/1:139,145:284:99:3740,0,3392 8 38677932 rs2013586 A G 3926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.313;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=-0.381;SOR=0.791 GT:AD:DP:GQ:PL 0/1:135,150:285:99:3955,0,3216 8 38684853 rs2037204 T C 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.335;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.018;SOR=0.641 GT:AD:DP:GQ:PL 0/1:84,93:177:99:2257,0,1938 8 38827185 rs5891050 GC G 9933.73 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=37.2;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,267:267:99:9971,804,0 8 38835456 rs4733960 T C 3964.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=1.812 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3993,366,0 8 38835666 rs4733961 T C 3951.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.501 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3980,381,0 8 38848850 rs4733895 C T 3222.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3251,332,0 8 38884342 rs10652213 G GTTCT 4852.73 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;QD=43.72;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,111:111:99:4890,334,0 8 38965271 rs59118660 C T 9545.77 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9574,952,0 8 39080632 rs7845771 C G 4480.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4509,470,0 8 39468128 rs73605945 A T 1377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=6.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=-0.238;SOR=0.755 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1406,0,1330 8 39496029 rs12708194 T C 1080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.663;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.635;SOR=0.733 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1109,0,1311 8 39521419 rs6988389 T C 2432.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.65;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2461,262,0 8 39537616 rs28454772 C T 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.557;SOR=0.668 GT:AD:DP:GQ:PL 0/1:65,64:129:99:1563,0,1576 8 39840234 rs4736794 A G 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=1.941;SOR=0.68 GT:AD:DP:GQ:PL 0/1:48,39:87:99:841,0,1095 8 39862881 rs10109853 C T 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-2.036;SOR=0.784 GT:AD:DP:GQ:PL 0/1:28,44:72:99:994,0,599 8 39872866 rs2981161 A C 4110.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.35;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4139,434,0 8 39872935 rs4503083 T A 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.25;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=1.67;SOR=0.648 GT:AD:DP:GQ:PL 0/1:103,63:166:99:1476,0,2553 8 40011079 rs6474226 G A 3700.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3729,380,0 8 40389772 rs74701408 G A 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=1.133;SOR=1.164 GT:AD:DP:GQ:PL 0/1:42,40:82:99:906,0,975 8 40438757 rs17851751 T C 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-1.366;SOR=0.621 GT:AD:DP:GQ:PL 0/1:62,55:117:99:1336,0,1419 8 41166637 rs3832595 GGCT G 3827.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=4.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.94;ReadPosRankSum=0.39;SOR=1.009 GT:AD:DP:GQ:PL 0/1:125,101:226:99:3865,0,5333 8 41519462 rs515071 A G 6913.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.219;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.28;ReadPosRankSum=1.237;SOR=1.473 GT:AD:DP:GQ:PL 1/1:2,219:221:99:6942,614,0 8 41529856 rs508112 A G 5985.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6014,614,0 8 41582031 rs61735313 G T 1516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.03;ReadPosRankSum=-0.319;SOR=0.569 GT:AD:DP:GQ:PL 0/1:116,73:189:99:1545,0,2881 8 41583294 rs2304873 C T 3532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=2.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.051;SOR=0.848 GT:AD:DP:GQ:PL 0/1:188,151:339:99:3561,0,4570 8 41585438 rs2304871 G A 1959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=4.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-0.103;SOR=0.881 GT:AD:DP:GQ:PL 0/1:65,86:151:99:1988,0,1541 8 41790866 rs2980901 G C 2325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.591;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.416;SOR=0.917 GT:AD:DP:GQ:PL 0/1:114,91:205:99:2354,0,3122 8 41794934 rs13748 C T 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.14;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=-2.58;SOR=0.522 GT:AD:DP:GQ:PL 0/1:78,62:140:99:1340,0,1874 8 41805249 rs10504048 C T 767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.836;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-0.126;SOR=0.639 GT:AD:DP:GQ:PL 0/1:43,36:79:99:796,0,1206 8 41906512 rs141360124 T C 1009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.214;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=11.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=1.575;SOR=0.138 GT:AD:DP:GQ:PL 0/1:30,36:66:99:1038,0,805 8 42036577 rs1136159 A G 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.016;SOR=0.587 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1222,0,1533 8 42044897 rs8178749 C T 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.069;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=1.313;SOR=0.716 GT:AD:DP:GQ:PL 0/1:59,54:113:99:1289,0,1410 8 42044954 rs1058720 G A 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.733;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.255;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.242;SOR=0.926 GT:AD:DP:GQ:PL 0/1:106,90:196:99:2088,0,2461 8 42175303 rs2294100 A T 2411.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=1.264 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2440,242,0 8 42868455 rs5891200 CT C 332.79 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=0.573;QD=17.52;ReadPosRankSum=-0.286;SOR=0.208 GT:AD:DP:GQ:PL 1/1:2,17:22:12:363,12,0 8 43047593 rs17603428 G A 1267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=3.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-1.125;SOR=1.031 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1296,0,1587 8 43054553 rs1126058 T C 2858.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.26;SOR=1.042 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,71:71:99:1|1:43054553_T_C:2887,214,0 8 43054556 rs200678234 C T 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.587;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.502;SOR=1.259 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,42:70:99:0|1:43054553_T_C:1010,0,806 8 43152515 rs376393499 T C 1993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.39;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-1.247;SOR=0.659 GT:AD:DP:GQ:PL 0/1:98,89:187:99:2022,0,2489 8 48320529 rs17612211 G A 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.539;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=7.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=0.576;SOR=1.717 GT:AD:DP:GQ:PL 0/1:37,24:61:99:567,0,858 8 48805788 rs8178087 C T 2950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=-0.115;QD=12.5;ReadPosRankSum=-0.415;SOR=0.867 GT:AD:DP:GQ:PL 0/1:111,125:236:99:2979,0,2692 8 48805816 rs11411516 A AG 8581.73 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=36.99;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,232:232:99:8619,698,0 8 48846519 rs1231202 T C 4125.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.147 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4154,421,0 8 48885436 rs762679 T A 4125.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4154,428,0 8 51571172 rs1911830 G A 1014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-1.215;SOR=0.657 GT:AD:DP:GQ:PL 0/1:33,46:79:99:1043,0,753 8 51664541 rs11429292 G GT 808.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=1.261;SOR=0.817 GT:AD:DP:GQ:PL 0/1:24,36:60:99:846,0,440 8 52232487 rs1052704 G T 1427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.073;SOR=0.599 GT:AD:DP:GQ:PL 0/1:72,66:138:99:1456,0,1715 8 52233408 rs7827446 C T 1379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.942;QD=11.59;ReadPosRankSum=0.474;SOR=0.82 GT:AD:DP:GQ:PL 0/1:62,57:119:99:1408,0,1411 8 52252171 rs11778598 A G 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.456;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=3.383;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.73;ReadPosRankSum=0.068;SOR=0.342 GT:AD:DP:GQ:PL 0/1:31,39:70:99:1129,0,817 8 52252320 rs16916011 A G 1081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.622;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-1.336;SOR=0.773 GT:AD:DP:GQ:PL 0/1:62,47:109:99:1110,0,1448 8 52284654 rs5891410 C CA 614.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.88;ReadPosRankSum=0.152;SOR=1.005 GT:AD:DP:GQ:PL 0/1:46,32:78:99:652,0,901 8 52321243 rs2977020 T C 7665.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.79;ReadPosRankSum=1.494;SOR=0.23 GT:AD:DP:GQ:PL 1/1:1,248:249:99:7694,708,0 8 52321686 rs11985241 C T 2590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.616;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.863;SOR=0.754 GT:AD:DP:GQ:PL 0/1:143,110:253:99:2619,0,3968 8 52321843 rs11992240 G C 3863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.705;SOR=0.704 GT:AD:DP:GQ:PL 0/1:180,165:345:99:3892,0,4449 8 52325767 rs16916207 T G 1352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=-0.432;SOR=0.749 GT:AD:DP:GQ:PL 0/1:39,58:97:99:1381,0,775 8 52366200 rs6473599 G A 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.093;SOR=0.651 GT:AD:DP:GQ:PL 0/1:87,85:172:99:1929,0,2243 8 52733050 rs12335014 T A 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.147;SOR=0.576 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1902,0,1922 8 52746153 rs9298462 C T 1196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.31;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=4.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-1.062;SOR=1.029 GT:AD:DP:GQ:PL 0/1:73,57:130:99:1225,0,1750 8 52811681 rs10106734 A G 4352.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.27;SOR=1.724 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4381,381,0 8 53071461 rs2278152 G A 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.624;SOR=0.724 GT:AD:DP:GQ:PL 0/1:82,68:150:99:1610,0,2127 8 53569680 rs62499947 C T 4039.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4068,405,0 8 53586706 rs17337252 A G 4804.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4833,479,0 8 54745538 rs6991513 C G 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=0.125;SOR=1.085 GT:AD:DP:GQ:PL 0/1:56,46:102:99:1059,0,1388 8 55059927 rs12679103 T G 758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.236;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=4.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.495;SOR=0.292 GT:AD:DP:GQ:PL 0/1:31,29:60:99:787,0,874 8 55539057 rs444772 G A 1688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.919;SOR=0.707 GT:AD:DP:GQ:PL 0/1:62,70:132:99:1717,0,1523 8 55539395 rs2293869 A T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.039;SOR=0.986 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1473,0,1494 8 55541450 rs446227 G A 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.142;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.486;SOR=0.735 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1773,0,2154 8 55541513 rs414352 T C 1875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.038;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=1.239;SOR=0.605 GT:AD:DP:GQ:PL 0/1:63,72:135:99:1904,0,1505 8 55541617 rs441800 A G 2517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.102;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=6.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.26;ReadPosRankSum=1.921;SOR=0.705 GT:AD:DP:GQ:PL 0/1:73,92:165:99:2546,0,1876 8 55542540 rs61739567 G A 1113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=0.847;SOR=0.774 GT:AD:DP:GQ:PL 0/1:65,46:111:99:1142,0,1848 8 56656195 rs7836019 T C 3023.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3052,282,0 8 56686224 rs1818 T C 3039.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3068,300,0 8 56698801 rs76064957 C T 436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.388;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=4.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.06;ReadPosRankSum=-0.564;SOR=1.981 GT:AD:DP:GQ:PL 0/1:13,16:29:99:465,0,330 8 56723575 . T C 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0;DP=166;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-1.187;SOR=0.563 GT:AD:DP:GQ:PL 0/1:76,89:165:99:1952,0,1715 8 56985814 rs1050403 T C 616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=-2.799;QD=9.95;ReadPosRankSum=0.32;SOR=0.557 GT:AD:DP:GQ:PL 0/1:34,28:62:99:645,0,863 8 56986737 rs2976044 A G 747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.939;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.854;SOR=0.696 GT:AD:DP:GQ:PL 0/1:40,29:69:99:776,0,1025 8 57078933 rs35883156 G T 1302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.054;SOR=0.713 GT:AD:DP:GQ:PL 0/1:72,55:127:99:1331,0,1817 8 57353826 rs3839874 AG A 2092.73 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=35.47;SOR=1.773 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2130,178,0 8 59329438 rs13277646 A G 662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.748;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.19;ReadPosRankSum=0.332;SOR=1.034 GT:AD:DP:GQ:PL 0/1:75,32:107:99:691,0,1852 8 59345705 rs16923472 G C 463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-1.987;SOR=0.862 GT:AD:DP:GQ:PL 0/1:17,21:38:99:492,0,449 8 59411042 rs2162459 G A 3138.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=1.796 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3167,314,0 8 59512334 rs2680903 G A 4933.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4962,518,0 8 59514105 rs66472341 G GAAA 1074.73 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;QD=56.56;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,19:32:94:1048,94,0 8 59515756 rs2255834 G A 3107.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.54 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3136,298,0 8 59764368 rs3837195 CAATA C 3365.73 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;QD=43.15;SOR=3.003 GT:AD:DP:GQ:PL 1/1:0,78:84:99:3397,237,0 8 59851853 rs79446072 A G 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.387;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=2.097;SOR=0.939 GT:AD:DP:GQ:PL 0/1:94,68:162:99:1572,0,2247 8 61655009 rs41305525 A G 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.371;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.685;SOR=0.767 GT:AD:DP:GQ:PL 0/1:75,65:140:99:1796,0,1990 8 62416074 rs7005617 G A 4523.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.562 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4552,443,0 8 62438530 rs4738904 A G 5894.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5923,588,0 8 62550925 rs199637738 A G 183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.05;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.52;ReadPosRankSum=0.36;SOR=0.733 GT:AD:DP:GQ:PL 0/1:52,21:73:99:212,0,1325 8 63659610 rs1319275 G A 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.332;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-1.163;SOR=0.919 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1394,0,1300 8 63659635 rs4739003 G A 1268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-1.127;SOR=0.594 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1297,0,1176 8 63902715 rs56081236 T G 373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.604;ClippingRankSum=0;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.76;ReadPosRankSum=-0.257;SOR=0.914 GT:AD:DP:GQ:PL 0/1:6,12:18:99:402,0,148 8 63939839 rs2305558 C T 286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-1.324;SOR=0.976 GT:AD:DP:GQ:PL 0/1:11,13:24:99:315,0,271 8 63942717 rs4617146 C T 247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.553;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-0.18;SOR=1.479 GT:AD:DP:GQ:PL 0/1:18,11:29:99:276,0,405 8 63948198 rs34099334 A C 1426.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.76;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1455,105,0 8 63951237 rs11545077 C T 938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.822;SOR=0.711 GT:AD:DP:GQ:PL 0/1:46,44:90:99:967,0,1231 8 63951312 rs1800909 A G 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.133;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=0;QD=10.02;ReadPosRankSum=0.67;SOR=0.84 GT:AD:DP:GQ:PL 0/1:54,41:95:99:980,0,1266 8 63976754 rs4501570 A G 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.73;ReadPosRankSum=1.799;SOR=1.004 GT:AD:DP:GQ:PL 0/1:33,65:98:99:1570,0,646 8 63978658 rs5891887 TA T 2892.73 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.3;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2930,330,0 8 64098729 rs72538982 A AG 4978.73 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.15;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,124:124:99:5016,373,0 8 65493429 rs7016250 T G 3815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.309;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=-0.236;SOR=0.674 GT:AD:DP:GQ:PL 0/1:109,146:255:99:3844,0,2615 8 65711004 rs7842714 T A 2715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=2.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=0.201;SOR=0.721 GT:AD:DP:GQ:PL 0/1:100,107:207:99:2744,0,2544 8 66517486 rs3765205 C T 1984.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.41 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2013,201,0 8 66525548 rs11559265 T C 4256.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4285,437,0 8 67428325 rs74540254 C T 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.454;SOR=0.553 GT:AD:DP:GQ:PL 0/1:67,68:135:99:1491,0,1661 8 67592152 rs1057463 T C 763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.892;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-1.083;SOR=0.608 GT:AD:DP:GQ:PL 0/1:46,35:81:99:792,0,1077 8 67874005 rs112717882 G C 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.166;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=6.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=1.066;SOR=0.321 GT:AD:DP:GQ:PL 0/1:47,57:104:99:1220,0,1181 8 67955556 rs200155628 G GA 44.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.358;QD=0.78;ReadPosRankSum=-0.493;SOR=0.636 GT:AD:DP:GQ:PL 0/1:48,9:57:82:82,0,1021 8 68536470 rs10957393 A G 570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.94;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-1.151;SOR=0.463 GT:AD:DP:GQ:PL 0/1:23,24:47:99:599,0,535 8 68864728 rs61753697 G A 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.843;SOR=0.579 GT:AD:DP:GQ:PL 0/1:89,78:167:99:1773,0,2265 8 68968166 rs1434774 C A 2280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.01;ReadPosRankSum=0.754;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,60:120:99:0|1:68968166_C_A:2309,0,3242 8 68968171 rs1434775 G A 2252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.274;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.42;ReadPosRankSum=-0.622;SOR=0.69 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,59:116:99:0|1:68968166_C_A:2281,0,3191 8 68972907 rs1369164 C G 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.951;SOR=0.795 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1263,0,1233 8 68993013 rs12682458 A G 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.906;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.04;ReadPosRankSum=0.523;SOR=0.83 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,29:67:99:0|1:68993013_A_G:1103,0,1990 8 68993014 rs12680555 T C 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.552;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.04;ReadPosRankSum=0.491;SOR=0.83 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,29:67:99:0|1:68993013_A_G:1103,0,1990 8 68995468 rs1030752 C T 487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=1.775;QD=8.87;ReadPosRankSum=0.344;SOR=1.022 GT:AD:DP:GQ:PL 0/1:33,22:55:99:516,0,834 8 68995633 rs1030753 A G 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.624;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.131;SOR=0.736 GT:AD:DP:GQ:PL 0/1:35,41:76:99:997,0,802 8 69002965 rs12544121 A G 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=-0.951;SOR=0.454 GT:AD:DP:GQ:PL 0/1:73,45:118:99:1052,0,1839 8 69009268 rs3812458 C T 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=1.147;SOR=0.729 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1116,0,1197 8 69020496 rs4260880 T C 1302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.271;SOR=0.889 GT:AD:DP:GQ:PL 0/1:56,52:108:99:1331,0,1524 8 69434195 rs2289831 T C 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.95;ReadPosRankSum=1.084;SOR=0.457 GT:AD:DP:GQ:PL 0/1:76,49:125:99:1022,0,1923 8 69699756 rs16935065 G A 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-1.094;SOR=0.765 GT:AD:DP:GQ:PL 0/1:69,50:119:99:1050,0,1717 8 70553087 rs72658296 T C 641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.729;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=-2.62;SOR=0.994 GT:AD:DP:GQ:PL 0/1:53,27:80:99:670,0,1297 8 70744812 rs3750266 G A 8747.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8776,878,0 8 71037103 . T TA 275.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.318;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.36;ReadPosRankSum=1.005;SOR=0.913 GT:AD:DP:GQ:PL 0/1:61,21:84:99:313,0,1250 8 71075813 . CAT C 946.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.411;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.093;QD=17.21;ReadPosRankSum=0.456;SOR=0.536 GT:AD:DP:GQ:PL 0/1:29,26:55:99:984,0,1258 8 71593425 rs6991329 G A 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=1.75;SOR=0.795 GT:AD:DP:GQ:PL 0/1:68,84:152:99:2135,0,1815 8 72111599 rs10103397 A G 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.781;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.078;SOR=0.731 GT:AD:DP:GQ:PL 0/1:49,54:103:99:1340,0,1131 8 72129009 rs4738118 G A 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.542;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=10.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=-1.511;SOR=1.544 GT:AD:DP:GQ:PL 0/1:69,42:111:99:980,0,1770 8 72936145 rs959976 T C 460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=5.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=-1.07;SOR=1.609 GT:AD:DP:GQ:PL 0/1:30,23:53:99:489,0,696 8 72942210 rs3824151 G T 1953.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.74;QD=28.73;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1982,204,0 8 72965973 rs3735942 G A 1195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.788;SOR=0.402 GT:AD:DP:GQ:PL 0/1:53,54:107:99:1224,0,1302 8 72966002 rs3735943 G A 3798.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3827,407,0 8 72969263 rs3779752 A C 725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.389;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.705;SOR=0.62 GT:AD:DP:GQ:PL 0/1:33,36:69:99:754,0,726 8 72975801 rs7819749 T G 2268.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2297,231,0 8 72981327 rs1811457 A G 4365.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4394,420,0 8 72984041 rs16937976 C G 977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.49;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.227;SOR=0.595 GT:AD:DP:GQ:PL 0/1:37,37:74:99:1006,0,1014 8 72987638 rs13268757 G A 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.369;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=1.609;SOR=0.377 GT:AD:DP:GQ:PL 0/1:32,40:72:99:1021,0,958 8 73850203 rs11782118 G A 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=-0.17;SOR=0.648 GT:AD:DP:GQ:PL 0/1:64,77:141:99:1805,0,1572 8 73926236 rs2975841 T G 2256.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2285,227,0 8 73982161 rs2291219 A G 2570.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2599,268,0 8 74005131 rs59331088 A G 1284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-0.435;SOR=0.65 GT:AD:DP:GQ:PL 0/1:71,60:131:99:1313,0,1810 8 74204653 rs2070764 A T 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.827;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=0.863;QD=9.5;ReadPosRankSum=0.561;SOR=0.346 GT:AD:DP:GQ:PL 0/1:43,30:73:99:722,0,1094 8 74334889 rs114263344 T G 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.74;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-1.221;QD=9.27;ReadPosRankSum=2.448;SOR=0.693 GT:AD:DP:GQ:PL 0/1:73,55:128:99:1215,0,1648 8 74334905 rs73318729 T C 1157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.224;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-1.236;QD=9.34;ReadPosRankSum=1.333;SOR=0.67 GT:AD:DP:GQ:PL 0/1:70,54:124:99:1186,0,1618 8 74334947 rs60983829 AAAAC A 1939.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.191;QD=23.09;ReadPosRankSum=1.241;SOR=0.467 GT:AD:DP:GQ:PL 0/1:34,50:84:99:1977,0,1265 8 74527996 rs949493 C T 2619.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.71;QD=28.48;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2648,276,0 8 74917084 rs6472812 A G 811.77 PASS AC=2;AF=1;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,28:28:84:840,84,0 8 75262798 rs7828201 G C 1790.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1819,186,0 8 75274141 rs11554166 T G 1070.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.46;SOR=1.387 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1099,116,0 8 76452313 rs2943549 G A 547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.066;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-1.845;SOR=1.058 GT:AD:DP:GQ:PL 0/1:24,24:48:99:576,0,515 8 76468282 rs1805098 G A 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.364;QD=11.45;ReadPosRankSum=1.907;SOR=0.473 GT:AD:DP:GQ:PL 0/1:32,36:68:99:807,0,782 8 76468309 rs61003427 GTT G 859.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.039;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=0.968;QD=18.29;ReadPosRankSum=1.386;SOR=0.746 GT:AD:DP:GQ:PL 0/1:16,31:53:99:897,0,511 8 76472560 rs2941473 A T 1362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.944;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=5.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=2.176;SOR=1.199 GT:AD:DP:GQ:PL 0/1:42,54:96:99:1391,0,979 8 76476193 rs1800951 C A 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=1.23;SOR=0.763 GT:AD:DP:GQ:PL 0/1:64,54:118:99:1180,0,1626 8 77765865 rs2728455 C T 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=2.266;SOR=0.75 GT:AD:DP:GQ:PL 0/1:85,63:148:99:1539,0,2162 8 77895865 rs10087163 A G 3071.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3100,292,0 8 79610710 rs1054283 A G 2751.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2780,272,0 8 79629738 rs5892663 C CA 1752.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.18;ReadPosRankSum=-0.96;SOR=0.413 GT:AD:DP:GQ:PL 0/1:22,80:123:99:1790,0,187 8 80678493 rs142613628 AGGCATGT A 1657.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.35;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-1.213;SOR=0.622 GT:AD:DP:GQ:PL 0/1:79,46:125:99:1695,0,4546 8 80831393 rs201430403 TA T 79.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.49;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=4.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.93;ReadPosRankSum=0.564;SOR=0.293 GT:AD:DP:GQ:PL 0/1:70,16:97:99:117,0,1647 8 81733727 rs3907424 C A 5216.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5245,546,0 8 81897200 rs7006101 C T 1597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.305;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.817;SOR=0.984 GT:AD:DP:GQ:PL 0/1:64,62:126:99:1626,0,1583 8 81905397 rs2016465 A G 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.76;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-1.228;SOR=0.736 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1585,0,1684 8 82606782 rs2955006 A G 4865.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4894,455,0 8 82713832 rs33964984 C CA 190.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.852;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.06;ReadPosRankSum=0.088;SOR=0.532 GT:AD:DP:GQ:PL 0/1:14,13:39:99:228,0,247 8 82727569 rs16909651 T C 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.416;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.63;ReadPosRankSum=-0.026;SOR=0.634 GT:AD:DP:GQ:PL 0/1:31,42:73:99:1169,0,781 8 86022336 . C CT 102.79 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=1.359;SOR=0.593 GT:AD:DP:GQ:PL 0/1:5,7:16:99:140,0,115 8 86089787 rs12926 C G 3597.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.46;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3626,393,0 8 86126827 rs112611553 C CAACATT 3026.73 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.18;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:3064,208,0 8 86171786 rs4739698 T C 2687.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=1.095 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2716,275,0 8 86351997 rs20571 G A 3455.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3484,368,0 8 86389403 rs703 T C 4687.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4716,470,0 8 87060672 rs3802225 A G 2624.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2653,258,0 8 87076520 rs6998760 C A 4654.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4683,447,0 8 87155094 rs1483779 T C 1405.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.56;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1434,153,0 8 87226634 rs56993779 TCCGACATC T 1458.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.3;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.96;ReadPosRankSum=0.265;SOR=0.864 GT:AD:DP:GQ:PL 0/1:47,39:86:99:1496,0,4837 8 87229702 rs4546639 A G 627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.419;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.228;SOR=0.764 GT:AD:DP:GQ:PL 0/1:28,22:50:99:656,0,750 8 87229739 rs4419794 C T 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-0.935;SOR=0.614 GT:AD:DP:GQ:PL 0/1:36,39:75:99:1057,0,1024 8 87241847 rs7814198 G A 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.269;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.816;SOR=0.849 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1623,0,1421 8 87474085 rs7460650 A G 466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.86;ReadPosRankSum=0.063;SOR=0.73 GT:AD:DP:GQ:PL 0/1:43,25:68:99:495,0,1089 8 87489562 rs66648775 AAC A 930.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.99;ReadPosRankSum=-1.811;SOR=0.346 GT:AD:DP:GQ:PL 0/1:21,28:49:99:968,0,773 8 87497176 rs11539113 G A 604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.756;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=1.088;SOR=0.399 GT:AD:DP:GQ:PGT:PID:PL 0/1:22,24:46:99:0|1:87497176_G_A:633,0,471 8 87567193 rs2304789 C T 2878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=-0.233;SOR=0.649 GT:AD:DP:GQ:PL 0/1:90,118:208:99:2907,0,2072 8 87666251 rs4961206 T G 1433.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.57;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1462,155,0 8 87679303 rs6471482 A C 3738.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3767,369,0 8 87755776 rs35807406 T C 1441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.815;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.532;SOR=0.823 GT:AD:DP:GQ:PL 0/1:66,59:125:99:1470,0,1537 8 88218202 rs58151279 A AT 158.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.12;ReadPosRankSum=1.895;SOR=0.832 GT:AD:DP:GQ:PL 0/1:57,18:102:99:196,0,1208 8 89198831 rs144312592 CAA C 1202.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=52.29;ReadPosRankSum=-0.367;SOR=0.169 GT:AD:DP:GQ:PL 1/1:2,21:64:65:925,65,0 8 91940446 rs1002583 C T 1084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.66;SOR=1.041 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1113,0,933 8 92021036 rs2054805 C T 3040.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3069,318,0 8 92030760 rs141135624 AAC A 2358.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.85;ReadPosRankSum=0.299;SOR=0.487 GT:AD:DP:GQ:PL 0/1:75,65:140:99:2396,0,3061 8 92033502 rs34503257 T C 2255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.24;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.826;SOR=0.843 GT:AD:DP:GQ:PL 0/1:93,96:189:99:2284,0,2235 8 92213022 rs72666050 T A 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.865;SOR=0.76 GT:AD:DP:GQ:PL 0/1:50,52:102:99:1202,0,1075 8 92364100 rs10109254 T C 2394.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2423,249,0 8 94146656 rs13267247 G T 4672.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4701,477,0 8 94738629 rs36117362 G A 769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=1.025;SOR=0.705 GT:AD:DP:GQ:PL 0/1:39,32:71:99:798,0,985 8 94794620 rs3097427 C T 595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=1.465;SOR=0.411 GT:AD:DP:GQ:PL 0/1:32,28:60:99:624,0,874 8 94808165 rs3134031 A G 977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=1.414;SOR=0.828 GT:AD:DP:GQ:PL 0/1:57,48:105:99:1006,0,1343 8 95143172 rs1051624 T G 2414.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.36;SOR=0.877 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,57:57:99:1|1:95143172_T_G:2443,171,0 8 95143186 rs1051623 C G 2291.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.07;SOR=1.136 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,52:52:99:1|1:95143172_T_G:2320,157,0 8 95158146 rs13263145 G C 3754.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3783,354,0 8 95158382 rs1131830 C T 3185.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3214,324,0 8 95188850 rs2243518 T C 3527.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.632;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.35;ReadPosRankSum=1.936;SOR=0.808 GT:AD:DP:GQ:PL 1/1:2,127:129:99:3556,336,0 8 95272605 rs2170363 G C 1383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.027;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-0.246;SOR=1.167 GT:AD:DP:GQ:PL 0/1:86,59:145:99:1412,0,2139 8 95655596 rs72676907 T C 987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.809;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=-1.443;QD=13;ReadPosRankSum=0.198;SOR=0.691 GT:AD:DP:GQ:PL 0/1:37,39:76:99:1016,0,846 8 95658526 rs60139063 T C 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=4.223;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.942;QD=12.42;ReadPosRankSum=1.693;SOR=1.072 GT:AD:DP:GQ:PL 0/1:37,44:81:99:1034,0,796 8 95680229 rs1549466 C T 2185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-0.942;SOR=0.719 GT:AD:DP:GQ:PL 0/1:70,93:163:99:2214,0,1637 8 95690579 rs12677519 T C 5712.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5741,545,0 8 95718131 rs61112381 CTTTT C 1608.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.623;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.564;QD=30.35;ReadPosRankSum=-0.501;SOR=1.01 GT:AD:DP:GQ:PL 0/1:18,35:81:99:1646,0,969 8 95853708 rs11996455 G A 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.38;ReadPosRankSum=-1.349;SOR=1.628 GT:AD:DP:GQ:PL 0/1:10,21:31:99:567,0,226 8 95877787 rs713113 T C 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.061;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=1.726;SOR=0.697 GT:AD:DP:GQ:PL 0/1:69,61:130:99:1525,0,1530 8 95888307 rs1129152 C T 735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.84;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.834;SOR=0.829 GT:AD:DP:GQ:PL 0/1:35,30:65:99:764,0,871 8 96047806 rs34960210 T TA 1036.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.38;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.46;ReadPosRankSum=-0.052;SOR=0.317 GT:AD:DP:GQ:PL 0/1:13,50:71:99:1074,0,176 8 96053782 rs79118993 GCT G 2490.73 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;QD=42.22;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2528,177,0 8 96070181 rs2678832 T C 1629.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.9;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1658,129,0 8 97243720 rs2292835 G A 772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-3.033;SOR=0.446 GT:AD:DP:GQ:PL 0/1:52,38:90:99:801,0,1408 8 97343326 rs3830537 ATCTTGT A 1930.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.71;ReadPosRankSum=0.832;SOR=0.612 GT:AD:DP:GQ:PL 0/1:58,51:109:99:1968,0,2683 8 97847358 rs1864384 G T 1972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.266;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-1.536;SOR=0.792 GT:AD:DP:GQ:PL 0/1:129,90:219:99:2001,0,3060 8 98289986 rs28669903 C T 10448.8 PASS AC=2;AF=1;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,351:351:99:10477,1052,0 8 98787994 rs2449510 A G 802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.15;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=4.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-0.468;SOR=0.341 GT:AD:DP:GQ:PL 0/1:61,33:94:99:831,0,1717 8 98788033 rs2449509 G C 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.263;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.788;SOR=0.962 GT:AD:DP:GQ:PL 0/1:84,54:138:99:1549,0,2185 8 98943446 rs2290470 T C 2944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.424;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.612;SOR=0.64 GT:AD:DP:GQ:PL 0/1:128,122:250:99:2973,0,3057 8 98954012 rs2513845 T C 5264.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5293,528,0 8 98954108 rs35407519 G T 1847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=5.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=0.808;SOR=0.548 GT:AD:DP:GQ:PL 0/1:113,91:204:99:1876,0,2508 8 98991221 rs1869609 A G 1910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=5.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.658;SOR=0.534 GT:AD:DP:GQ:PL 0/1:73,83:156:99:1939,0,2799 8 98991223 rs1869608 A G 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=5.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.633;SOR=0.984 GT:AD:DP:GQ:PL 0/1:83,73:156:99:1693,0,3255 8 99006787 rs16896514 C T 1428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.48;SOR=0.486 GT:AD:DP:GQ:PL 0/1:74,63:137:99:1457,0,1992 8 99030280 rs2248014 T C 6126.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.11;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6155,677,0 8 99205612 rs3735887 C T 850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.21;ReadPosRankSum=0.786;SOR=0.88 GT:AD:DP:GQ:PL 0/1:76,42:118:99:879,0,1832 8 99208190 rs3779721 A C 1551.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1580,162,0 8 100133706 rs7460625 T G 5671.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5700,527,0 8 100975002 rs6468700 A G 2618.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2647,264,0 8 101721756 rs57799615 A C 138.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.5;MQ=59.1;MQRankSum=-10.236;QD=0.65;ReadPosRankSum=-0.414;SOR=0.532 GT:AD:DP:GQ:PL 0/1:183,32:215:99:167,0,5192 8 101721812 rs200409148 G A 1092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.589;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=5.923;MLEAC=1;MLEAF=0.5;MQ=57.53;MQRankSum=-8.308;QD=4.2;ReadPosRankSum=3.253;SOR=0.817 GT:AD:DP:GQ:PGT:PID:PL 0/1:215,45:260:99:0|1:101721812_G_A:1121,0,8822 8 101721817 rs201076736 T C 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.485;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.849;MLEAC=1;MLEAF=0.5;MQ=57.52;MQRankSum=-7.768;QD=4.06;ReadPosRankSum=3.04;SOR=0.837 GT:AD:DP:GQ:PGT:PID:PL 0/1:220,45:265:99:0|1:101721812_G_A:1103,0,8985 8 101721839 rs202074479 C A 295.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.341;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=2.951;MLEAC=1;MLEAF=0.5;MQ=57.45;MQRankSum=-7.729;QD=1.07;ReadPosRankSum=0.732;SOR=0.979 GT:AD:DP:GQ:PL 0/1:233,43:276:99:324,0,6625 8 101725036 rs60596898 G GAA 2276.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.252;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=37.95;ReadPosRankSum=-0.247;SOR=1.863 GT:AD:DP:GQ:PL 1/1:2,58:80:99:2268,159,0 8 103220351 rs1265117 A G 1828.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1857,181,0 8 103276753 rs12707772 T G 651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.113;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=1.41;SOR=0.346 GT:AD:DP:GQ:PL 0/1:23,28:51:99:680,0,532 8 103287850 rs367962786 TA T 81.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.735;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.68;ReadPosRankSum=-0.278;SOR=0.854 GT:AD:DP:GQ:PL 0/1:101,20:128:99:119,0,2362 8 103307533 rs9650002 T C 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.499;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=0.198;SOR=0.753 GT:AD:DP:GQ:PL 0/1:81,75:156:99:2056,0,2032 8 103311667 rs36178006 T G 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=6.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.7;ReadPosRankSum=0.008;SOR=1.445 GT:AD:DP:GQ:PL 0/1:44,26:70:99:567,0,1062 8 103572992 rs3018444 C G 8281.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.76;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,181:183:99:8310,563,0 8 103573001 rs3018445 C G 8918.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.5;SOR=0.916 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,196:196:99:1|1:103573001_C_G:8947,602,0 8 103573006 rs2916569 G A 8959.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.8;SOR=0.864 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,200:200:99:1|1:103573001_C_G:8988,608,0 8 103846946 rs145786248 G A 767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=0.05;SOR=0.804 GT:AD:DP:GQ:PL 0/1:33,35:68:99:796,0,854 8 104153137 rs3736043 C T 5587.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5616,576,0 8 104312341 rs3736047 A G 313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.771;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-0.394;SOR=0.793 GT:AD:DP:GQ:PL 0/1:19,13:32:99:342,0,500 8 104312432 rs827528 A G 707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.85;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=1.095;SOR=0.368 GT:AD:DP:GQ:PL 0/1:24,29:53:99:736,0,523 8 104337096 rs3808554 A G 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.677;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=1.916;SOR=0.698 GT:AD:DP:GQ:PL 0/1:41,37:78:99:1097,0,1101 8 104337367 rs3808553 A C 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.264;SOR=0.575 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1394,0,1666 8 104343686 rs1053917 G A 627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.75;ReadPosRankSum=-0.481;SOR=0.509 GT:AD:DP:GQ:PL 0/1:47,34:81:99:656,0,1108 8 104394744 rs3098233 T C 3031.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3060,309,0 8 104412635 rs74934875 G A 614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.23;ReadPosRankSum=-0.553;SOR=0.733 GT:AD:DP:GQ:PL 0/1:54,31:85:99:643,0,1457 8 104427359 rs3134295 A C 3425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.687;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=1.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.735;SOR=0.802 GT:AD:DP:GQ:PL 0/1:164,127:291:99:3454,0,4302 8 105367096 rs2458431 T C 1925.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1954,203,0 8 105479149 rs2959023 A G 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.445;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=7.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-1.093;SOR=0.867 GT:AD:DP:GQ:PL 0/1:97,89:186:99:2536,0,2128 8 106573578 rs3735953 C T 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=4.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.804;SOR=0.382 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1150,0,1721 8 107704940 . TA T 202.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.176;QD=5.07;ReadPosRankSum=-0.739;SOR=0.839 GT:AD:DP:GQ:PL 0/1:27,13:48:99:240,0,521 8 107754473 rs1681904 G A 707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.956;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=0.471;SOR=0.906 GT:AD:DP:GQ:PL 0/1:45,32:77:99:736,0,1064 8 108315599 rs149628829 C CA 528.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.26;ReadPosRankSum=1.178;SOR=0.466 GT:AD:DP:GQ:PL 0/1:33,31:83:99:566,0,646 8 108970367 rs601558 A G 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-0.323;SOR=0.684 GT:AD:DP:GQ:PL 0/1:75,56:131:99:1301,0,1877 8 110293184 rs3830706 TA T 339.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=2.008;QD=7.55;ReadPosRankSum=-3.257;SOR=0.434 GT:AD:DP:GQ:PL 0/1:25,20:45:99:377,0,571 8 110302047 rs2980619 T G 520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=-0.358;SOR=0.705 GT:AD:DP:GQ:PL 0/1:33,27:60:99:549,0,775 8 110455321 rs1673408 C A 1254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=5.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-0.312;SOR=1.159 GT:AD:DP:GQ:PL 0/1:72,55:127:99:1283,0,1834 8 110460355 rs56254474 CT C 99.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.81;ReadPosRankSum=-0.679;SOR=0.83 GT:AD:DP:GQ:PL 0/1:43,12:64:99:137,0,993 8 110460488 rs1673407 G T 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.562;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-0.048;SOR=0.687 GT:AD:DP:GQ:PL 0/1:101,84:185:99:1854,0,2268 8 110465060 rs1673404 G C 1410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.756;SOR=0.762 GT:AD:DP:GQ:PL 0/1:83,64:147:99:1439,0,2076 8 110472066 rs17368310 G C 1013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.729;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=0.336;SOR=0.842 GT:AD:DP:GQ:PL 0/1:71,43:114:99:1042,0,1811 8 110476993 rs1673398 A G 2994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.161;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=6.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.109;SOR=0.873 GT:AD:DP:GQ:PL 0/1:107,124:231:99:3023,0,2296 8 110487512 rs12549027 T A 1142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.639;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.747;SOR=1.079 GT:AD:DP:GQ:PL 0/1:47,46:93:99:1171,0,1133 8 110489620 rs1783148 A T 1101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.017;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.41;ReadPosRankSum=1.006;SOR=0.971 GT:AD:DP:GQ:PL 0/1:82,49:131:99:1130,0,1926 8 110491840 rs1783147 C G 525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.508;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.41;ReadPosRankSum=-0.219;SOR=0.627 GT:AD:DP:GQ:PL 0/1:56,26:82:99:554,0,1346 8 110491877 rs1630942 G A 415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.94;ReadPosRankSum=-0.965;SOR=0.527 GT:AD:DP:GQ:PL 0/1:46,24:70:99:444,0,1139 8 110504088 rs56235913 CTTT C 1834.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.192;QD=15.42;ReadPosRankSum=-1.452;SOR=0.773 GT:AD:DP:GQ:PL 0/1:69,50:119:99:1872,0,3154 8 110505886 rs2607628 C T 515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=-0.654;SOR=0.507 GT:AD:DP:GQ:PL 0/1:32,25:57:99:544,0,796 8 110534512 rs1563578 G A 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.689;SOR=0.553 GT:AD:DP:GQ:PL 0/1:67,68:135:99:1606,0,1838 8 110535444 rs71305955 CTT C 1018.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.418;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.011;QD=17.56;ReadPosRankSum=0.981;SOR=0.651 GT:AD:DP:GQ:PL 0/1:23,35:94:99:1056,0,842 8 110539186 rs1783174 G A 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.417;SOR=0.988 GT:AD:DP:GQ:PL 0/1:87,84:171:99:2029,0,2133 8 110542298 rs1617259 C T 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.104;SOR=0.749 GT:AD:DP:GQ:PL 0/1:34,29:63:99:722,0,821 8 110542337 rs1617350 T C 1009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.369;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=-0.084;SOR=0.458 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,28:66:99:0|1:110542337_T_C:1038,0,2007 8 113241088 rs1592624 T G 590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.723;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.281;SOR=0.866 GT:AD:DP:GQ:PL 0/1:33,24:57:99:619,0,815 8 113516209 rs10955625 G A 325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.641;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.15;ReadPosRankSum=0.863;SOR=0.957 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,20:53:99:1|0:113516208_TG_T:354,0,775 8 113662583 rs17652171 A C 705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.002;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=4.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=1.284;SOR=1.329 GT:AD:DP:GQ:PL 0/1:51,28:79:99:734,0,1230 8 114186003 rs2219898 T C 1032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.688;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=6.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.94;ReadPosRankSum=0.812;SOR=1.27 GT:AD:DP:GQ:PL 0/1:80,50:130:99:1061,0,1884 8 116635872 rs35329862 T TA 1258.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.687;QD=11.99;ReadPosRankSum=0.078;SOR=0.709 GT:AD:DP:GQ:PL 0/1:61,44:105:99:1296,0,1836 8 117868531 . TAA T 890.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.848;ClippingRankSum=0;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.55;MQRankSum=-3.48;QD=13.29;ReadPosRankSum=-0.082;SOR=0.719 GT:AD:DP:GQ:PL 0/1:32,35:114:99:928,0,922 8 118184783 rs13266634 C T 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.679;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.635;SOR=0.772 GT:AD:DP:GQ:PL 0/1:90,74:164:99:1747,0,2069 8 118819578 rs7837891 C T 2282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=2.295;SOR=0.856 GT:AD:DP:GQ:PL 0/1:86,100:186:99:2311,0,2127 8 118847782 rs11546829 G A 2137.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.708 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2166,217,0 8 119941173 rs3134046 A G 3604.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3633,369,0 8 119964052 rs2073618 G C 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.28;SOR=0.677 GT:AD:DP:GQ:PL 0/1:68,85:153:99:1832,0,1468 8 120220775 rs71302978 CG C 7196.73 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.65;QD=33.95;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,212:212:99:7234,637,0 8 120428758 rs56013326 G A 1297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=1.16;SOR=0.628 GT:AD:DP:GQ:PL 0/1:64,57:121:99:1326,0,1562 8 120429024 rs2279112 G A 1795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.906;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=10.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=1.145;SOR=0.243 GT:AD:DP:GQ:PL 0/1:55,65:120:99:1824,0,1418 8 120575184 rs1058913 G A 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.786;SOR=0.596 GT:AD:DP:GQ:PL 0/1:82,88:170:99:1943,0,1892 8 120594802 rs4871364 A G 1238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.173;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.216;SOR=0.634 GT:AD:DP:GQ:PL 0/1:47,50:97:99:1267,0,1083 8 120596023 rs10283100 A G 1449.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.36;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1478,163,0 8 120744349 rs956748 T C 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=1.269;SOR=0.585 GT:AD:DP:GQ:PL 0/1:106,108:214:99:2489,0,2510 8 120744399 rs956749 C T 1753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-1.107;SOR=0.676 GT:AD:DP:GQ:PL 0/1:94,78:172:99:1782,0,2413 8 120790304 rs1509348 T C 1520.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.65;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1549,164,0 8 120790378 rs35033415 G GA 412.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=0.467;SOR=0.495 GT:AD:DP:GQ:PL 0/1:12,19:31:99:450,0,216 8 120793296 rs7002501 C T 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=2.525;SOR=0.487 GT:AD:DP:GQ:PL 0/1:38,56:94:99:1418,0,1005 8 120795607 rs13268676 G A 3690.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3719,388,0 8 120803637 rs9297605 C G 4691.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.94;SOR=0.808 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,127:127:99:1|1:120803637_C_G:4720,386,0 8 120803654 rs11996390 C T 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.583;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.52;SOR=0.819 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,66:135:99:0|1:120803637_C_G:1475,0,1541 8 120814020 rs7813438 A G 3510.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.282 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3539,338,0 8 120847123 rs1055131 C T 1746.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1775,171,0 8 120847188 rs1055130 T C 2443.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2472,249,0 8 120886075 rs117543860 G A 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.934;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.597;SOR=0.678 GT:AD:DP:GQ:PL 0/1:100,104:204:99:2539,0,2261 8 120977489 rs34057546 A G 1977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.284;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.476;SOR=0.986 GT:AD:DP:GQ:PL 0/1:101,83:184:99:2006,0,2409 8 121013770 rs2271900 A G 4083.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=1.416 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4112,382,0 8 121210069 rs2305598 T C 1667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.582;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-1.446;SOR=0.625 GT:AD:DP:GQ:PL 0/1:69,77:146:99:1696,0,1414 8 121215991 rs2305600 T C 1720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-0.735;SOR=0.682 GT:AD:DP:GQ:PL 0/1:90,77:167:99:1749,0,2257 8 121228679 rs4870723 A C 1565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.193;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.868;SOR=0.765 GT:AD:DP:GQ:PL 0/1:62,66:128:99:1594,0,1390 8 121259843 rs2305604 T C 1882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.234;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.74;SOR=0.687 GT:AD:DP:GQ:PL 0/1:81,78:159:99:1911,0,2011 8 121298156 rs17833992 G C 764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.703;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-1.347;SOR=0.703 GT:AD:DP:GQ:PL 0/1:35,31:66:99:793,0,883 8 121354634 rs140154122 C G 398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.05;ReadPosRankSum=0.904;SOR=0.702 GT:AD:DP:GQ:PL 0/1:57,22:79:99:427,0,1516 8 121455558 rs5894521 G GA 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.947;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=0.81;QD=17.9;ReadPosRankSum=1.236;SOR=0.417 GT:AD:DP:GQ:PL 0/1:14,62:105:99:1389,0,138 8 121483196 rs13248998 G A 1652.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1681,171,0 8 121530190 rs13258848 A G 4349.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4378,434,0 8 121824063 rs190526297 C A 2430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.572;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.101;SOR=0.868 GT:AD:DP:GQ:PL 0/1:102,98:200:99:2459,0,2689 8 123964431 rs3204141 G A 3919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=1.667;SOR=0.843 GT:AD:DP:GQ:PL 0/1:180,170:350:99:3948,0,4561 8 123964953 rs3808600 C T 4402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.458;SOR=0.713 GT:AD:DP:GQ:PL 0/1:183,189:372:99:4431,0,4369 8 123966159 rs3802265 G C 3978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-1.021;SOR=0.586 GT:AD:DP:GQ:PL 0/1:161,166:327:99:4007,0,4068 8 124381432 rs183409566 T C 623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.39;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=1.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=-0.996;SOR=1.071 GT:AD:DP:GQ:PL 0/1:20,25:45:99:652,0,501 8 124448689 rs9297669 T C 3657.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.188 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3686,348,0 8 124664130 rs11780509 C T 6197.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6226,605,0 8 124664167 rs11784192 T C 8152.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,260:260:99:8181,780,0 8 124664792 rs7387544 C T 6592.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6621,654,0 8 124664873 rs7387792 A G 7938.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.89;SOR=0.963 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,173:173:99:1|1:124664873_A_G:7967,542,0 8 124664874 rs7386562 T C 7938.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.35;SOR=0.953 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,179:179:99:1|1:124664873_A_G:7967,542,0 8 124696867 rs2294015 C T 4023.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4052,431,0 8 124701193 rs55688638 C G 2174.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2203,231,0 8 124824826 rs1946586 G A 3932.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.76;QD=29.13;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3961,405,0 8 124987478 rs7465584 T C 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.826;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=0.119;SOR=0.633 GT:AD:DP:GQ:PL 0/1:95,60:155:99:1404,0,2281 8 125072426 rs4483140 T C 3757.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3786,401,0 8 125076589 rs7012186 T G 3735.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3764,351,0 8 125107201 rs6470219 G A 6937.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.47;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,156:156:99:1|1:125107201_G_A:6966,473,0 8 125107207 rs6470220 C T 6909.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.87;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,154:154:99:1|1:125107201_G_A:6938,470,0 8 125463250 rs3812475 T C 1933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.644;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.18;SOR=0.899 GT:AD:DP:GQ:PL 0/1:96,77:173:99:1962,0,2393 8 125463544 rs11556913 T C 2587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.427;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.182;SOR=0.703 GT:AD:DP:GQ:PL 0/1:118,96:214:99:2616,0,2959 8 125498547 rs3812471 C T 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.764;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=8.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.66;ReadPosRankSum=-0.218;SOR=0.976 GT:AD:DP:GQ:PL 0/1:64,82:146:99:2168,0,1524 8 125565328 rs3829037 T C 3140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.759;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.207;SOR=0.551 GT:AD:DP:GQ:PL 0/1:115,124:239:99:3169,0,2652 8 125579973 rs6470251 C T 4973.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5002,477,0 8 125579990 rs6470252 C T 5132.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5161,507,0 8 126015400 rs3083763 C CTT 1273.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.546;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.052;QD=12.25;ReadPosRankSum=1.56;SOR=1 GT:AD:DP:GQ:PL 0/1:60,44:116:99:1311,0,1817 8 126056215 rs11370883 G GC 3586.73 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=39.85;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3624,271,0 8 126085586 rs12546285 G A 483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.696;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=4.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.49;ReadPosRankSum=-0.32;SOR=1.485 GT:AD:DP:GQ:PL 0/1:36,21:57:99:512,0,925 8 126443348 rs2385113 C T 11099.8 PASS AC=2;AF=1;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,351:351:99:11128,1051,0 8 128428638 rs6998061 G A 4221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0;DB;DP=417;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=54.49;MQRankSum=14.301;QD=10.12;ReadPosRankSum=0.265;SOR=0.733 GT:AD:DP:GQ:PL 0/1:233,184:417:99:4250,0,9136 8 128428656 rs13273814 A C 6174.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.444;ClippingRankSum=0;DB;DP=441;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.5;MQ=53.76;MQRankSum=-14.753;QD=14;ReadPosRankSum=0.11;SOR=0.642 GT:AD:DP:GQ:PL 0/1:196,245:441:99:6203,0,7065 8 128428795 rs6998254 G A 3871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.275;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.5;MQ=59.32;MQRankSum=3.09;QD=9.68;ReadPosRankSum=0.162;SOR=0.745 GT:AD:DP:GQ:PL 0/1:228,172:400:99:3900,0,6229 8 128428823 rs7002225 G C 5073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0;DB;DP=453;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-1.668;QD=11.23;ReadPosRankSum=0.345;SOR=0.748 GT:AD:DP:GQ:PL 0/1:245,207:452:99:5102,0,6379 8 130760850 rs4144738 A G 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.945;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=1.45;SOR=0.492 GT:AD:DP:GQ:PL 0/1:73,56:129:99:1373,0,1852 8 130762291 rs77681114 G A 1123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=0.642;SOR=0.704 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1152,0,1008 8 130788548 rs4733741 C T 660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=-0.452;SOR=1.112 GT:AD:DP:GQ:PL 0/1:21,27:48:99:689,0,569 8 131124559 rs966185 T C 4294.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.55;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4323,384,0 8 131138344 rs2305510 A C 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-1.598;SOR=0.791 GT:AD:DP:GQ:PL 0/1:45,45:90:99:1095,0,1146 8 131921956 rs12547243 A G 4307.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4336,459,0 8 131922027 rs12545028 T G 2226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=2.085;SOR=0.66 GT:AD:DP:GQ:PL 0/1:86,98:184:99:2255,0,1908 8 132952727 rs34080810 A AT 1960.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.725;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.589;QD=16.34;ReadPosRankSum=-1.43;SOR=1.127 GT:AD:DP:GQ:PL 0/1:32,88:130:99:1998,0,351 8 132966045 . CT C 252.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.617;ClippingRankSum=0;DP=141;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=2.789;QD=2.28;ReadPosRankSum=-0.644;SOR=0.82 GT:AD:DP:GQ:PL 0/1:85,26:130:99:290,0,1867 8 132982824 rs1051221 A G 3642.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3671,363,0 8 133044122 rs61756131 C T 1071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.535;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-2.773;SOR=0.821 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1100,0,1342 8 133047071 rs11779306 G A 536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=0.478;SOR=0.546 GT:AD:DP:GQ:PL 0/1:42,27:69:99:565,0,1120 8 133053309 rs7386782 T C 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.802;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.549;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,25:79:99:0|1:133053309_T_C:929,0,2893 8 133053318 rs7386783 T C 897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.683;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.805;SOR=0.922 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,27:85:99:0|1:133053309_T_C:926,0,2925 8 133092138 rs2403730 G A 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.918;SOR=0.964 GT:AD:DP:GQ:PL 0/1:94,91:185:99:2235,0,2388 8 133101818 rs6471038 G A 1657.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.74;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1686,185,0 8 133107830 rs7833441 T C 2802.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2831,267,0 8 133108005 rs55906165 A G 1186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-2.042;SOR=0.708 GT:AD:DP:GQ:PL 0/1:41,51:92:99:1215,0,914 8 133111181 rs72715366 G A 904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.358;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=0.656;SOR=0.687 GT:AD:DP:GQ:PL 0/1:48,37:85:99:933,0,1103 8 133112392 rs1370568 G A 2143.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2172,227,0 8 133184914 rs17575754 G C 2793.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2822,276,0 8 133192449 rs41272387 A G 6254.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.69;ReadPosRankSum=-0.629;SOR=0.323 GT:AD:DP:GQ:PL 1/1:1,217:218:99:6283,612,0 8 133192521 rs41272389 A G 6062.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6091,596,0 8 133584558 rs9297853 A G 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.645;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=1.3;SOR=0.566 GT:AD:DP:GQ:PL 0/1:58,60:118:99:1539,0,1464 8 133637659 rs2293979 G A 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.361;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.236;SOR=0.457 GT:AD:DP:GQ:PL 0/1:50,51:101:99:1276,0,1139 8 133764263 rs2467986 G A 753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=-1.609;SOR=0.759 GT:AD:DP:GQ:PL 0/1:58,36:94:99:782,0,1440 8 133769554 rs138117721 TGA T 915.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.963;QD=18.31;ReadPosRankSum=0.789;SOR=0.784 GT:AD:DP:GQ:PL 0/1:23,27:50:99:953,0,806 8 133811435 rs2244885 T A 621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.559;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.35;SOR=0.907 GT:AD:DP:GQ:PL 0/1:28,28:56:99:650,0,581 8 133844508 rs16904746 C T 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.282;SOR=0.765 GT:AD:DP:GQ:PL 0/1:32,31:63:99:785,0,816 8 133858009 rs756201 C T 368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-1.706;SOR=0.495 GT:AD:DP:GQ:PL 0/1:19,16:35:99:397,0,536 8 133899160 rs180222 C G 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.503;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.501;SOR=0.446 GT:AD:DP:GQ:PL 0/1:89,70:159:99:1881,0,2257 8 133900252 rs180223 T G 2589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.492;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.23;ReadPosRankSum=-2.33;SOR=1.035 GT:AD:DP:GQ:PL 0/1:73,97:170:99:2618,0,1674 8 133900386 rs2069550 T C 3288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.102;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=6.219;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=-1.244;SOR=0.696 GT:AD:DP:GQ:PL 0/1:106,129:235:99:3317,0,2539 8 133909974 rs853326 A G 2319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.998;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.152;SOR=0.642 GT:AD:DP:GQ:PL 0/1:119,100:219:99:2348,0,2645 8 133919047 rs114944116 G T 2608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.941;SOR=0.621 GT:AD:DP:GQ:PL 0/1:119,105:224:99:2637,0,2990 8 133920411 rs2261147 T C 1769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.898;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.881;SOR=0.751 GT:AD:DP:GQ:PL 0/1:87,73:160:99:1798,0,2085 8 133920518 rs2069556 A G 2358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=8.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.95;SOR=0.768 GT:AD:DP:GQ:PL 0/1:122,111:233:99:2387,0,2851 8 133931748 rs853304 T C 2416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-0.093;SOR=0.598 GT:AD:DP:GQ:PL 0/1:85,102:187:99:2445,0,2108 8 133975283 rs2069561 G A 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=0.785;SOR=0.617 GT:AD:DP:GQ:PL 0/1:85,67:152:99:1422,0,2121 8 133984058 rs2076740 C T 2232.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2261,240,0 8 134024278 rs61741457 C T 2097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.051;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=1.166;SOR=0.847 GT:AD:DP:GQ:PL 0/1:83,83:166:99:2126,0,1932 8 134108453 rs2069568 C T 4050.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.807 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4079,374,0 8 134125682 rs1133076 G A 3252.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3281,323,0 8 134144113 rs2294024 C T 5502.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5531,587,0 8 134225396 rs55733525 T TC 7129.73 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=35.47;SOR=1.494 GT:AD:DP:GQ:PL 1/1:0,201:201:99:7167,605,0 8 134260948 rs2233336 A G 1775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.799;SOR=0.807 GT:AD:DP:GQ:PL 0/1:99,79:178:99:1804,0,2437 8 134292516 rs2272653 A G 2739.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.116 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2768,263,0 8 134474148 rs1048479 C T 2581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.405;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=9.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.495;SOR=0.878 GT:AD:DP:GQ:PL 0/1:133,106:239:99:2610,0,3288 8 134488007 rs2230542 G A 3808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.893;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.238;SOR=0.698 GT:AD:DP:GQ:PL 0/1:165,154:319:99:3837,0,4087 8 135602581 rs3739425 A G 1184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.208;SOR=0.538 GT:AD:DP:GQ:PL 0/1:55,52:107:99:1213,0,1446 8 135612745 rs894344 A G 4843.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4872,483,0 8 135614705 rs3739423 A G 8283.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8312,812,0 8 135614972 rs3739422 A G 3307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.875;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=1.152;SOR=0.574 GT:AD:DP:GQ:PL 0/1:163,128:291:99:3336,0,3930 8 135649848 rs12541381 G A 3860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.041;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.843;SOR=0.761 GT:AD:DP:GQ:PL 0/1:163,160:323:99:3889,0,3777 8 136561153 rs11166602 A G 2365.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2394,222,0 8 139149510 rs6577877 A C 931.77 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.4;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,34:34:99:960,102,0 8 139164192 rs3750306 G A 6027.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6056,596,0 8 139165068 rs3763590 C T 5946.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5975,606,0 8 139165272 rs7835712 T C 5307.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.6;SOR=0.744 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,119:119:99:1|1:139165272_T_C:5336,364,0 8 139165273 rs13280444 G A 5307.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.98;SOR=0.727 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:139165272_T_C:5336,364,0 8 139165289 rs7835830 T C 3757.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.68;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3786,345,0 8 139165463 rs11311519 CA C 1454.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.531;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.09;ReadPosRankSum=-1;SOR=1.498 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1492,133,0 8 139190943 rs66488273 C CA 928.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=2.298;SOR=0.549 GT:AD:DP:GQ:PL 0/1:63,43:106:99:966,0,1415 8 139277934 rs61703386 T C 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.397;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.689;SOR=0.441 GT:AD:DP:GQ:PL 0/1:50,44:94:99:1162,0,1160 8 139626176 rs7000261 C G 3468.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3497,360,0 8 139647262 rs10091563 A G 2520.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.01;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2549,269,0 8 139672671 rs3935045 T C 2102.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2131,216,0 8 139697478 rs9644500 T C 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-0.003;SOR=0.698 GT:AD:DP:GQ:PL 0/1:76,76:152:99:1641,0,1623 8 139701209 rs4909444 G T 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-2.512;SOR=0.664 GT:AD:DP:GQ:PL 0/1:52,43:95:99:916,0,1303 8 139727981 rs9324493 A G 630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.106;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=2.465;SOR=0.715 GT:AD:DP:GQ:PL 0/1:48,31:79:99:659,0,976 8 139768085 rs7825723 G A 950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=4.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-1.043;SOR=0.298 GT:AD:DP:GQ:PL 0/1:36,39:75:99:979,0,987 8 139772480 rs73437386 G A 1602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.605;SOR=0.865 GT:AD:DP:GQ:PL 0/1:59,71:130:99:1631,0,1316 8 139824057 rs10101430 G A 3790.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.96;SOR=1.322 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3819,345,0 8 139824126 . G GGGTGGA 544.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-2.055;SOR=0.199 GT:AD:DP:GQ:PL 0/1:32,15:47:99:582,0,1237 8 139838912 rs2292927 T C 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-1.968;SOR=0.756 GT:AD:DP:GQ:PL 0/1:69,69:138:99:1638,0,1746 8 140630990 rs2615374 A G 7458.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7487,708,0 8 141034189 rs9792174 A T 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-0.684;SOR=0.946 GT:AD:DP:GQ:PL 0/1:53,47:100:99:929,0,1353 8 141445349 rs58283757 AAGAAAACAAAAAACAAAAACC A 2859.73 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.57;QD=43.33;SOR=1.574 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2897,207,0 8 141461062 rs3735803 G A 6049.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6078,628,0 8 141461185 rs3735802 A G 7455.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7484,735,0 8 141461266 rs3735801 A G 7352.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7381,735,0 8 141468370 rs117206975 C T 2609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.095;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=3.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.008;SOR=0.486 GT:AD:DP:GQ:PL 0/1:110,100:210:99:2638,0,2882 8 141582896 rs13276958 T C 6364.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6393,668,0 8 141679817 rs10283368 T C 5314.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.26;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5343,584,0 8 141840645 rs4246127 G A 405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.667;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=7.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=0.884;SOR=1.93 GT:AD:DP:GQ:PL 0/1:27,16:43:99:434,0,632 8 142138860 rs3739232 C G 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.083;SOR=0.567 GT:AD:DP:GQ:PL 0/1:89,72:161:99:1827,0,2492 8 142146708 rs307772 T C 2950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.861;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=8.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.506;SOR=1.172 GT:AD:DP:GQ:PL 0/1:145,122:267:99:2979,0,3489 8 142170884 rs2289001 C T 2368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.028;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=1.139;SOR=0.756 GT:AD:DP:GQ:PL 0/1:115,99:214:99:2397,0,3297 8 142176507 rs412706 T C 2282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.532;SOR=0.671 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2311,0,2242 8 142204326 rs1045248 C G 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.918;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=5.176;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.717;SOR=1.074 GT:AD:DP:GQ:PL 0/1:108,84:192:99:2035,0,2698 8 142222374 rs7017848 A G 9150.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,287:287:99:9179,861,0 8 142222445 rs3739238 T C 7975.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,258:258:99:8004,774,0 8 142225990 rs2288998 G A 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-1.399;SOR=0.698 GT:AD:DP:GQ:PL 0/1:93,79:172:99:1837,0,2509 8 142228077 rs201532280 AGAGCGGCCCCGCTCCGGT A 6888.73 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=44.44;SOR=1.171 GT:AD:DP:GQ:PL 1/1:0,155:155:99:6926,467,0 8 142228809 rs753779 T C 8856.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8885,855,0 8 142228909 rs753778 G A 3501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=1.169;SOR=0.661 GT:AD:DP:GQ:PL 0/1:139,145:284:99:3530,0,3574 8 142229145 rs3739235 A G 6273.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6302,621,0 8 142229891 rs2304279 A G 8449.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=30.95;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8478,818,0 8 142229946 rs4961256 G A 5097.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=29.99;SOR=1.423 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5126,510,0 8 142238339 rs34650936 C A 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.876;SOR=0.582 GT:AD:DP:GQ:PL 0/1:112,98:210:99:2432,0,2861 8 142367335 rs10875472 T C 5776.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5805,573,0 8 142367400 rs11167054 G A 5012.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.2;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,151:151:99:5041,453,0 8 142367559 rs11785629 G A 2735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-1.499;SOR=0.784 GT:AD:DP:GQ:PL 0/1:120,113:233:99:2764,0,2924 8 142437934 rs7465654 C T 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.999;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=0.267;SOR=0.687 GT:AD:DP:GQ:PL 0/1:91,70:161:99:1504,0,2002 8 142446937 rs78448370 C T 2024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.344;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.779;SOR=0.766 GT:AD:DP:GQ:PL 0/1:107,88:195:99:2053,0,2609 8 142458039 rs72685417 C T 2200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.559;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=2.056;SOR=0.793 GT:AD:DP:GQ:PL 0/1:95,89:184:99:2229,0,2260 8 142459814 rs7003306 C T 6488.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6517,657,0 8 142459859 rs62522537 G A 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.736;SOR=0.87 GT:AD:DP:GQ:PL 0/1:69,74:143:99:1779,0,1787 8 142476555 rs28439396 A G 2836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=4.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-0.426;SOR=0.705 GT:AD:DP:GQ:PL 0/1:122,123:245:99:2865,0,3040 8 142476611 rs28504323 G A 2613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-0.188;SOR=0.64 GT:AD:DP:GQ:PL 0/1:114,117:231:99:2642,0,2693 8 142477472 rs370101118 TTCCTGGC T 1191.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.978;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=2.138;QD=10.83;ReadPosRankSum=0.442;SOR=0.519 GT:AD:DP:GQ:PGT:PID:PL 0/1:76,34:110:99:0|1:142477468_GCCC_G:1229,0,3182 8 142477490 rs73713679 C T 1290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.061;QD=11.03;ReadPosRankSum=1.869;SOR=0.456 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,38:117:99:0|1:142477468_GCCC_G:1319,0,3251 8 142477517 rs79788097 G A 972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.686;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.917;QD=6.8;ReadPosRankSum=0.535;SOR=0.551 GT:AD:DP:GQ:PL 0/1:92,51:143:99:1001,0,2052 8 142477553 rs73713680 T C 2125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.41;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.853;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.852;QD=12.96;ReadPosRankSum=-1.77;SOR=0.95 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,61:164:99:0|1:142477553_T_C:2154,0,4161 8 142477563 rs73713681 C T 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.935;QD=12.86;ReadPosRankSum=-0.834;SOR=1.023 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,57:162:99:0|1:142477553_T_C:2111,0,4310 8 142477588 rs74908317 C T 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.45;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.976;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=2.025;QD=11.68;ReadPosRankSum=0.711;SOR=0.959 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,53:160:99:0|1:142477553_T_C:1897,0,4417 8 142477592 rs76586547 G A 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=2.045;QD=11.98;ReadPosRankSum=0.843;SOR=0.885 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,51:156:99:0|1:142477553_T_C:1897,0,4355 8 142477614 rs72685432 C T 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.496;SOR=1.011 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,49:151:99:0|1:142477553_T_C:1789,0,3957 8 142483063 rs4442176 C T 890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-0.807;SOR=0.558 GT:AD:DP:GQ:PL 0/1:29,39:68:99:919,0,774 8 142487856 rs11779508 A G 2035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=10.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.769;SOR=1.324 GT:AD:DP:GQ:PL 0/1:84,84:168:99:2064,0,1944 8 142488837 rs12547980 G A 1986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.791;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.026;SOR=0.714 GT:AD:DP:GQ:PL 0/1:101,83:184:99:2015,0,2356 8 142490079 rs2613641 G A 2754.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=1.691 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2783,264,0 8 142490120 rs2748416 G T 1016.77 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=1.681 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1045,96,0 8 142500345 rs75295956 C T 2023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.644;SOR=0.696 GT:AD:DP:GQ:PL 0/1:85,81:166:99:2052,0,2146 8 142505038 rs6578193 T C 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.211;SOR=0.899 GT:AD:DP:GQ:PL 0/1:96,95:191:99:2220,0,2104 8 142505056 rs2246587 T C 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=5.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.457;SOR=1.121 GT:AD:DP:GQ:PL 0/1:81,82:163:99:1913,0,1743 8 142505578 rs2748404 C A 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.832;SOR=0.558 GT:AD:DP:GQ:PL 0/1:75,87:162:99:2159,0,1644 8 142506461 rs2613637 A G 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.086;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.99;ReadPosRankSum=-0.81;SOR=0.713 GT:AD:DP:GQ:PL 0/1:74,114:188:99:3034,0,1705 8 143353038 rs35674714 C T 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-1.202;SOR=0.519 GT:AD:DP:GQ:PL 0/1:68,75:143:99:1874,0,1694 8 143413136 rs10435683 C T 1675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.732;SOR=0.718 GT:AD:DP:GQ:PL 0/1:65,72:137:99:1704,0,1700 8 143425720 rs10100935 T C 3802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=-0.45;SOR=0.561 GT:AD:DP:GQ:PL 0/1:115,150:265:99:3831,0,2543 8 143427178 rs33970858 C G 3575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.164;SOR=0.824 GT:AD:DP:GQ:PL 0/1:128,154:282:99:3604,0,3014 8 143436034 rs7814359 A G 1156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.562;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.81;SOR=0.543 GT:AD:DP:GQ:PL 0/1:61,51:112:99:1185,0,1409 8 143563087 rs11782438 C G 5580.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5609,566,0 8 143603318 rs7462471 C T 7172.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=1.339 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7201,693,0 8 143603418 rs7460600 G C 8921.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,317:317:99:8950,949,0 8 143614641 rs13272804 A G 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=4.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-2.131;SOR=1.064 GT:AD:DP:GQ:PL 0/1:85,81:166:99:1864,0,1911 8 143623459 rs34364916 G T 5077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.085;ClippingRankSum=0;DB;DP=410;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-0.307;SOR=0.679 GT:AD:DP:GQ:PL 0/1:192,218:410:99:5106,0,4785 8 143694775 rs28686812 G C 8201.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8230,786,0 8 143746087 rs33951456 CCA C 10255.7 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=41.35;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,248:248:99:10293,746,0 8 143763490 rs2978982 T C 2416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.949;SOR=0.719 GT:AD:DP:GQ:PL 0/1:104,96:200:99:2445,0,2874 8 143763547 rs1045531 C A 2351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=3.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.714;SOR=0.624 GT:AD:DP:GQ:PL 0/1:142,113:255:99:2380,0,3535 8 143782044 rs2585174 A G 2774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.03;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=9.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=0.754;SOR=0.912 GT:AD:DP:GQ:PL 0/1:100,105:205:99:2803,0,2508 8 143784500 rs2244163 T G 2769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.95;SOR=0.631 GT:AD:DP:GQ:PL 0/1:102,116:218:99:2798,0,2441 8 143808951 rs2585138 C T 2805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.428;SOR=0.72 GT:AD:DP:GQ:PL 0/1:116,107:223:99:2834,0,3112 8 143809193 rs2257840 C T 2556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.289;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=6.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.701;SOR=1.018 GT:AD:DP:GQ:PL 0/1:103,107:210:99:2585,0,2837 8 143955916 rs5295 C G 526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.647;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=1.152;SOR=0.923 GT:AD:DP:GQ:PL 0/1:31,21:52:99:555,0,832 8 143957129 rs61752786 G T 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=50.56;MQRankSum=-2.654;QD=10.67;ReadPosRankSum=0.199;SOR=0.591 GT:AD:DP:GQ:PL 0/1:77,68:145:99:1576,0,1877 8 143958427 rs6387 C T 5662.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59;QD=28.75;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5691,585,0 8 143959250 rs7818826 T C 3336.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.96;QD=29.53;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3365,339,0 8 143960597 rs5283 G A 3087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.57;SOR=0.741 GT:AD:DP:GQ:PL 0/1:132,131:263:99:3116,0,3278 8 143961005 rs6410 T C 7621.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.093;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;MQRankSum=0;QD=30.86;ReadPosRankSum=2.507;SOR=0.804 GT:AD:DP:GQ:PL 1/1:2,245:247:99:7650,692,0 8 143994266 rs61757294 A G 2343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.408;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=4.62;MLEAC=1;MLEAF=0.5;MQ=52.5;MQRankSum=-10.785;QD=14.2;ReadPosRankSum=-1.541;SOR=1.045 GT:AD:DP:GQ:PL 0/1:81,84:165:99:2372,0,1938 8 143994321 rs6435 T C 3645.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.033;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.19;MQRankSum=2.942;QD=32.26;ReadPosRankSum=0.348;SOR=1.092 GT:AD:DP:GQ:PL 1/1:3,110:113:99:3674,263,0 8 143994702 rs4538 G T 5173.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.13;QD=28.74;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5202,539,0 8 143995743 rs4543 C T 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.333;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.24;QD=8.41;ReadPosRankSum=-0.67;SOR=0.68 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,54:139:99:0|1:143995743_C_T:1197,0,1995 8 143995761 rs4536 C T 4199.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.9;SOR=1.208 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,117:117:99:1|1:143995743_C_T:4228,354,0 8 143996539 rs4539 T C 3777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.374;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.5;MQ=58.79;MQRankSum=-0.511;QD=15.61;ReadPosRankSum=-1.119;SOR=0.561 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,107:242:99:0|1:143996539_T_C:3806,0,7016 8 143996553 rs4546 G A 3552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.826;MLEAC=1;MLEAF=0.5;MQ=58.6;MQRankSum=-0.744;QD=16.22;ReadPosRankSum=-1.239;SOR=0.488 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,97:219:99:0|1:143996539_T_C:3581,0,6764 8 144103125 rs11547126 C T 2986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.156;SOR=0.606 GT:AD:DP:GQ:PL 0/1:130,130:260:99:3015,0,3090 8 144124609 rs11136300 T C 5430.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5459,543,0 8 144126244 rs4612316 T C 5711.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.424 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5740,552,0 8 144239660 rs7007949 G A 3321.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.23;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3350,363,0 8 144239859 rs10109061 A G 3644.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.84;SOR=1.35 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3673,332,0 8 144240257 rs9694368 C G 5865.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5894,585,0 8 144295154 rs61747644 C T 1607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.277;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.316;SOR=0.811 GT:AD:DP:GQ:PL 0/1:77,71:148:99:1636,0,1794 8 144295782 rs11538388 G T 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.645;SOR=0.474 GT:AD:DP:GQ:PL 0/1:69,62:131:99:1519,0,1841 8 144332012 rs6558339 T C 2759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.858;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.128;SOR=0.699 GT:AD:DP:GQ:PL 0/1:114,112:226:99:2788,0,2759 8 144351632 rs6558341 A G 3177.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3206,318,0 8 144358302 rs1056146 C T 2286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.318;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=4.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=2.026;SOR=0.462 GT:AD:DP:GQ:PL 0/1:130,97:227:99:2315,0,3210 8 144378868 rs7386259 A G 4181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.851;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.183;SOR=0.779 GT:AD:DP:GQ:PL 0/1:198,160:358:99:4210,0,4824 8 144403485 rs11544482 G C 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=8.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.115;SOR=1.172 GT:AD:DP:GQ:PL 0/1:106,76:182:99:1769,0,2729 8 144406705 rs11544484 C T 1959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-1.044;SOR=0.655 GT:AD:DP:GQ:PL 0/1:102,86:188:99:1988,0,2572 8 144417051 rs2956274 A G 2353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.79;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-1.555;SOR=0.604 GT:AD:DP:GQ:PL 0/1:92,92:184:99:2382,0,2297 8 144462169 rs3812440 A G 6851.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.02;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6880,641,0 8 144511953 . ATGGTGG A,ATGG 14182.7 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DP=429;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.18;MQRankSum=0.162;QD=43.11;ReadPosRankSum=0.773;SOR=0.741 GT:AD:DP:GQ:PL 1/2:1,27,301:355:99:14220,13103,13651,1036,0,112 8 144511995 rs1872900 A G 13120.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.514;ClippingRankSum=0;DB;DP=483;ExcessHet=3.0103;FS=4.046;MLEAC=2;MLEAF=1;MQ=60.16;MQRankSum=0.287;QD=28.59;ReadPosRankSum=-0.978;SOR=1.099 GT:AD:DP:GQ:PL 1/1:5,454:459:99:13149,1151,0 8 144522387 rs2272754 G T 4981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.384;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.12;ReadPosRankSum=-0.637;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,132:275:99:0|1:144522387_G_T:5010,0,7649 8 144522388 rs2272753 A T 4982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.05;ReadPosRankSum=-0.594;SOR=0.82 GT:AD:DP:GQ:PGT:PID:PL 0/1:144,132:276:99:0|1:144522387_G_T:5011,0,7649 8 144620183 rs4874147 T C 3162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.618;SOR=0.812 GT:AD:DP:GQ:PL 0/1:115,134:249:99:3191,0,2736 8 144642151 rs146152826 G GAGGGCAGGGC 2986.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.46;ReadPosRankSum=0.429;SOR=1.058 GT:AD:DP:GQ:PL 0/1:57,76:133:99:3024,0,2135 8 144643169 rs1545536 C T 1286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.065;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=6.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.655;SOR=0.318 GT:AD:DP:GQ:PL 0/1:49,63:112:99:1315,0,1342 8 144643603 rs2290414 G A 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=2.393;SOR=0.574 GT:AD:DP:GQ:PL 0/1:65,71:136:99:1595,0,1563 8 144644405 rs11551198 G A 2579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.583;SOR=0.673 GT:AD:DP:GQ:PL 0/1:124,107:231:99:2608,0,3159 8 144649541 rs34071446 G GC 2378.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.486;QD=12.39;ReadPosRankSum=-0.386;SOR=0.707 GT:AD:DP:GQ:PL 0/1:100,92:192:99:2416,0,2660 8 144649550 rs7010602 A G 7322.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.94;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,193:193:99:7351,586,0 8 144649601 rs13268196 A G 4472.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.13;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4501,406,0 8 144649625 rs10097556 T C 4012.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.83;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:4041,337,0 8 144649650 rs13254352 C A 1448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.283;SOR=0.695 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1477,0,1497 8 144649968 rs13255489 C T 1952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.575;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=3.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-1.688;SOR=0.953 GT:AD:DP:GQ:PL 0/1:114,88:202:99:1981,0,2731 8 144654255 rs4874153 A G 2420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.631;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=5.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-2.909;SOR=0.767 GT:AD:DP:GQ:PL 0/1:119,103:222:99:2449,0,2860 8 144654582 rs4874154 C A 1997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=9.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=1.059;SOR=1.293 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,83:188:99:0|1:144654582_C_A:2026,0,2721 8 144654586 rs4874155 G C 7201.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.74;SOR=0.916 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,196:196:99:1|1:144654582_C_A:7230,589,0 8 144657269 rs2290417 G C 2348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.799;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=4.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-1.226;SOR=0.493 GT:AD:DP:GQ:PL 0/1:90,89:179:99:2377,0,2664 8 144657801 rs9771743 G A 1591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.11;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.273;SOR=0.971 GT:AD:DP:GQ:PL 0/1:78,71:149:99:1620,0,2034 8 144660046 rs896954 G A 2935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.12;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=0.679;SOR=0.74 GT:AD:DP:GQ:PL 0/1:97,115:212:99:2964,0,2419 8 144660257 rs2015562 G T 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=-1.328;SOR=0.826 GT:AD:DP:GQ:PL 0/1:37,47:84:99:1189,0,983 8 144671244 rs4874160 C A 10533.8 PASS AC=2;AF=1;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,350:350:99:10562,1049,0 8 144671685 rs6985081 G C 10064.8 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.47;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,310:310:99:10093,930,0 8 144671922 rs3812448 G A 9258.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.49;ReadPosRankSum=-1.647;SOR=0.843 GT:AD:DP:GQ:PL 1/1:2,312:314:99:9287,889,0 8 144681777 rs10282929 G T 2946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.622;SOR=0.808 GT:AD:DP:GQ:PL 0/1:154,126:280:99:2975,0,4024 8 144689289 rs11549789 C T 1769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-0.505;SOR=0.706 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1798,0,1866 8 144697041 rs1049832 A G 3670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.39;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-1.239;SOR=0.642 GT:AD:DP:GQ:PL 0/1:147,145:292:99:3699,0,3282 8 144732026 rs3750203 G A 548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.03;ReadPosRankSum=-0.525;SOR=0.643 GT:AD:DP:GQ:PL 0/1:64,27:91:99:577,0,1826 8 144732363 rs4875017 T C 7112.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.24;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7141,642,0 8 144732418 rs4874084 A G 6561.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.31;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6590,594,0 8 144732450 rs3750204 G A 2494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.036;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=1.4;SOR=0.612 GT:AD:DP:GQ:PL 0/1:108,99:207:99:2523,0,2812 8 144775871 rs6987308 C A 6089.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6118,617,0 8 144776109 rs11786757 A G 10793.8 PASS AC=2;AF=1;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,351:351:99:10822,1053,0 8 144776713 rs7464270 A C 7493.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7522,774,0 8 144801243 rs12678428 C T 7633.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=29.82;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7662,767,0 8 144808747 rs11136321 G A 10457.8 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=1.024 GT:AD:DP:GQ:PL 1/1:0,325:325:99:10486,974,0 8 144809804 rs13254035 G A 8540.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8569,855,0 8 144810138 rs1137806 G A 3473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.203;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.74;SOR=0.73 GT:AD:DP:GQ:PL 0/1:163,143:306:99:3502,0,3924 8 144811338 rs9969600 C G 9404.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9433,929,0 8 144872411 rs4875053 C G 3850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.129;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=1.227;SOR=0.599 GT:AD:DP:GQ:PL 0/1:117,150:267:99:3879,0,2925 8 144874554 rs6991873 T C 7808.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7837,741,0 8 144885580 rs13281371 A G 6482.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.535;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=2.355;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.74;ReadPosRankSum=2.745;SOR=0.769 GT:AD:DP:GQ:PL 1/1:3,215:218:99:6511,568,0 8 144886809 rs11542374 C T 2883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-1.781;SOR=0.664 GT:AD:DP:GQ:PL 0/1:123,117:240:99:2912,0,3041 8 144889172 rs10866915 A G 3508.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3537,345,0 8 144890873 rs10098508 A T 4917.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.903;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.8;ReadPosRankSum=-1.355;SOR=0.472 GT:AD:DP:GQ:PL 1/1:1,164:165:99:4946,484,0 8 144893084 rs6558394 G A 8522.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8551,827,0 8 144894496 rs4875060 G A 2569.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2598,261,0 8 144895553 rs13251492 G A 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=0.954;SOR=0.728 GT:AD:DP:GQ:PL 0/1:68,50:118:99:1210,0,1770 8 144940290 rs201976887 C G 2871.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DB;DP=1961;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.79;MQRankSum=-4.239;QD=1.69;ReadPosRankSum=-0.062;SOR=0.742 GT:AD:DP:GQ:PL 0/1:1434,266:1700:99:2900,0,50394 8 144940300 rs4977191 G A 29162.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0;DB;DP=2165;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=53.82;MQRankSum=-9.355;QD=15.45;ReadPosRankSum=-1.61;SOR=0.655 GT:AD:DP:GQ:PL 0/1:808,1079:1887:99:29191,0,18064 8 144941181 rs7839934 G C 4752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.337;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.658;SOR=0.584 GT:AD:DP:GQ:PL 0/1:178,199:377:99:4781,0,4719 8 144941419 rs12681478 C T 3561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.923;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.19;SOR=0.64 GT:AD:DP:GQ:PL 0/1:188,152:340:99:3590,0,4677 8 144942903 rs6558399 T C 10370.8 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,321:321:99:10399,963,0 8 144944161 rs35221054 C T 5433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.038;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.67;ReadPosRankSum=0.452;SOR=0.628 GT:AD:DP:GQ:PGT:PID:PL 0/1:177,149:326:99:0|1:144944161_C_T:5462,0,8126 8 144944176 rs12542653 T C 5238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.482;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.23;ReadPosRankSum=-0.267;SOR=0.57 GT:AD:DP:GQ:PGT:PID:PL 0/1:161,143:304:99:0|1:144944161_C_T:5267,0,7812 8 144945792 rs13255110 T C 3398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.763;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=0.64;SOR=0.708 GT:AD:DP:GQ:PL 0/1:143,138:281:99:3427,0,3410 8 144946252 rs11136330 C T 2394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=-1.563;SOR=0.527 GT:AD:DP:GQ:PL 0/1:162,106:268:99:2423,0,4231 8 144946345 rs34753358 G A 3003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.771;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=2.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.462;SOR=0.603 GT:AD:DP:GQ:PL 0/1:155,123:278:99:3032,0,4030 8 144946818 rs13260439 C T 2888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.842;SOR=0.687 GT:AD:DP:GQ:PL 0/1:155,124:279:99:2917,0,4060 8 144992900 rs17062686 G A 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-1.168;SOR=0.807 GT:AD:DP:GQ:PL 0/1:97,107:204:99:2522,0,2423 8 145004546 rs11780911 G A 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.011;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=5.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.833;SOR=0.982 GT:AD:DP:GQ:PL 0/1:114,100:214:99:2340,0,3081 8 145057868 rs11544989 A G 4590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.641;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=5.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.368;SOR=0.49 GT:AD:DP:GQ:PL 0/1:173,182:355:99:4619,0,4281 8 145066886 rs13277282 A G 5389.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.77;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,155:155:99:5418,466,0 8 145095577 rs147284549 C T 3813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.444;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.791;SOR=0.65 GT:AD:DP:GQ:PL 0/1:144,170:314:99:3842,0,3555 8 145106938 rs60949781 GCC G 10798.7 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=42.51;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,254:254:99:10836,765,0 8 145107795 rs11136253 G A 9896.77 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9925,942,0 8 145108191 rs200702041 T C 3049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=4.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=1.067;SOR=0.995 GT:AD:DP:GQ:PL 0/1:105,127:232:99:3078,0,2430 8 145150101 rs11541475 T G 5279.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.19;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5308,492,0 8 145150832 rs7820984 A G 7439.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7468,767,0 8 145151665 rs200379271 TGG T 4529.73 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.85;SOR=2.016 GT:AD:DP:GQ:PL 1/1:0,101:101:99:4567,310,0 8 145154257 rs11541804 C G 3199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-1.257;SOR=0.729 GT:AD:DP:GQ:PL 0/1:134,126:260:99:3228,0,3512 8 145158446 rs12549149 C T 4802.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=1.41 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4831,441,0 8 145158503 rs11136254 G T 6542.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6571,621,0 8 145160646 rs11136256 T C 3965.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3994,392,0 8 145161823 rs11546144 G A 8025.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8054,797,0 8 145223191 rs6982878 G A 6185.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.05 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6214,639,0 8 145223288 rs34819224 C T 6643.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6672,689,0 8 145234508 rs7842771 G C 5239.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5268,507,0 8 145541766 rs55962377 G T 1573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-1.816;SOR=0.94 GT:AD:DP:GQ:PL 0/1:85,66:151:99:1602,0,2365 8 145557497 rs7013127 A C 5177.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.166 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5206,530,0 8 145620764 rs11556134 G A 835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=4.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=2.104;SOR=1.127 GT:AD:DP:GQ:PL 0/1:49,40:89:99:864,0,1279 8 145622455 . C G 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0;DP=164;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=1.056;SOR=0.426 GT:AD:DP:GQ:PL 0/1:91,72:163:99:1818,0,2569 8 145639726 rs2272662 T C 3616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.459;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.542;SOR=0.73 GT:AD:DP:GQ:PL 0/1:142,155:297:99:3645,0,3210 8 145640411 rs2977838 A G 9098.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,296:296:99:9127,888,0 8 145641328 rs17855765 C T 10322.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,340:340:99:10351,1018,0 8 145641564 rs2280839 T G 11378.8 PASS AC=2;AF=1;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,347:347:99:11407,1042,0 8 145642002 rs2280838 C T 9175.77 PASS AC=2;AF=1;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,301:301:99:9204,903,0 8 145665407 rs2229315 C T 1838.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.05;SOR=3.215 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1867,153,0 8 145665516 rs2306383 T C 5398.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5427,537,0 8 145665761 rs2229313 G A 5716.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5745,537,0 8 145667405 rs2242264 C G 4940.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4969,501,0 8 145668042 rs741969 G A 5744.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5773,582,0 8 145677973 rs2256094 C T 3817.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.323 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3846,393,0 8 145689915 rs2721167 G A 7675.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7704,778,0 8 145691915 rs112422823 G C 3384.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3413,333,0 8 145692385 rs2250891 C T 6548.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6577,641,0 8 145693720 rs2250657 A G 4268.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4297,440,0 8 145693900 rs182469517 G T 587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.646;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-0.425;SOR=0.804 GT:AD:DP:GQ:PL 0/1:31,28:59:99:616,0,926 8 145699601 rs2721176 T C 3454.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.22;SOR=1.925 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3483,312,0 8 145737636 rs4925828 A G 8494.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8523,792,0 8 145738581 rs67678060 TG T 361.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.832;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=7.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.48;ReadPosRankSum=-0.582;SOR=0.065 GT:AD:DP:GQ:PL 0/1:80,24:112:99:399,0,1825 8 145738767 rs11342077 CG C 12593.7 PASS AC=2;AF=1;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=37.04;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,340:340:99:12631,1023,0 8 145742514 rs2721190 A G 7054.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7083,699,0 8 145745182 rs2721172 T C 6684.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6713,684,0 8 145756170 rs873884 G A 10218.8 PASS AC=2;AF=1;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.03;QD=28.62;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,357:357:99:10247,1067,0 8 145771211 rs2721161 C G 1031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.138;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.981;SOR=0.952 GT:AD:DP:GQ:PL 0/1:43,38:81:99:1060,0,970 8 145773341 rs138155129 TCTG T 5864.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.388;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=2.383;QD=19.88;ReadPosRankSum=0.636;SOR=0.832 GT:AD:DP:GQ:PL 0/1:142,153:295:99:5902,0,5975 8 145806681 rs2620647 A G 3757.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3786,372,0 8 146003567 rs2294120 A G 2378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=4.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=1.452;SOR=0.447 GT:AD:DP:GQ:PL 0/1:86,98:184:99:2407,0,2099 8 146017534 rs200177451 G A 3263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.359;SOR=0.819 GT:AD:DP:GQ:PL 0/1:141,136:277:99:3292,0,3609 8 146029642 rs72699309 C T 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.189;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=1.84;SOR=0.724 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1144,0,1355 8 146032842 rs62531506 G A 4883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.486;SOR=0.703 GT:AD:DP:GQ:PL 0/1:181,198:379:99:4912,0,4575 8 146033347 rs2976653 T C 11178.8 PASS AC=2;AF=1;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,347:347:99:11207,1040,0 8 146067054 rs1735169 G A 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.932;SOR=0.553 GT:AD:DP:GQ:PL 0/1:104,112:216:99:2670,0,2629 8 146068322 rs9004 C T 2636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=7.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.703;SOR=0.497 GT:AD:DP:GQ:PL 0/1:105,107:212:99:2665,0,2807 8 146076708 rs1209879 C T 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.187;SOR=0.815 GT:AD:DP:GQ:PL 0/1:86,78:164:99:1952,0,2261 8 146115367 rs2735906 A G 3016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.955;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=3.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.01;ReadPosRankSum=1.407;SOR=0.822 GT:AD:DP:GQ:PL 0/1:85,116:201:99:3045,0,1926 8 146157841 . T C 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.628;ClippingRankSum=0;DP=212;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.37;ReadPosRankSum=-0.006;SOR=0.784 GT:AD:DP:GQ:PL 0/1:97,115:212:99:3075,0,2439 9 14889 rs71509924 A G 479.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.518;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.5;MQ=54.96;MQRankSum=-10.824;QD=1.85;ReadPosRankSum=-0.453;SOR=1.086 GT:AD:DP:GQ:PL 0/1:225,34:259:99:508,0,6010 9 17333 rs367723403 A G 169.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.363;ClippingRankSum=-0;DB;DP=18;ExcessHet=3.0103;FS=43.858;MLEAC=1;MLEAF=0.5;MQ=30.88;MQRankSum=-3.097;QD=9.43;ReadPosRankSum=0.269;SOR=4.605 GT:AD:DP:GQ:PL 0/1:9,9:18:99:198,0,273 9 17484 . G A 76.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0;DP=10;ExcessHet=3.0103;FS=11.761;MLEAC=1;MLEAF=0.5;MQ=24.44;MQRankSum=2.638;QD=7.68;ReadPosRankSum=-0.549;SOR=0.818 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,3:10:99:0|1:17484_G_A:105,0,340 9 17486 . A G 76.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.308;ClippingRankSum=-0;DP=10;ExcessHet=3.0103;FS=11.761;MLEAC=1;MLEAF=0.5;MQ=24.44;MQRankSum=2.638;QD=7.68;ReadPosRankSum=0.168;SOR=0.818 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,3:10:99:0|1:17484_G_A:105,0,340 9 17707 . C T 321.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.5;MQ=27.12;MQRankSum=-3.449;QD=8.94;ReadPosRankSum=2.632;SOR=1.739 GT:AD:DP:GQ:PL 0/1:20,16:36:99:350,0,500 9 17829 . G A 52.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.132;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.38;MQRankSum=-1.713;QD=2.29;ReadPosRankSum=-0.929;SOR=0.095 GT:AD:DP:GQ:PL 0/1:18,5:23:81:81,0,532 9 17843 . C A 32.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.978;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=30.02;MQRankSum=-1.328;QD=1.64;ReadPosRankSum=-2.476;SOR=0.083 GT:AD:DP:GQ:PL 0/1:16,4:20:61:61,0,478 9 154795 rs2785333 T C 5382.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.36;QD=29.25;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5411,550,0 9 178806 rs200835133 G C 3987.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.03;QD=32.16;SOR=1.667 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4016,372,0 9 214864 rs2236547 C T 5280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.523;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=1.845;SOR=0.763 GT:AD:DP:GQ:PL 0/1:188,205:393:99:5309,0,4681 9 214908 rs62533313 T C 6844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0;DB;DP=507;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.571;SOR=0.857 GT:AD:DP:GQ:PL 0/1:234,270:504:99:6873,0,5898 9 215057 rs481905 T C 5825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.271;ClippingRankSum=0;DB;DP=484;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.746;SOR=0.906 GT:AD:DP:GQ:PL 0/1:254,230:484:99:5854,0,6033 9 271638 rs506121 C T 575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.201;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.48;ReadPosRankSum=0.098;SOR=0.97 GT:AD:DP:GQ:PL 0/1:50,27:77:99:604,0,1296 9 286593 rs529208 C A 1409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=0.075;SOR=0.524 GT:AD:DP:GQ:PL 0/1:75,63:138:99:1438,0,1931 9 289590 rs202087573 CT C 1035.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=1.988;SOR=0.581 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1073,0,1159 9 328006 rs2296828 T C 3180.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.39 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3209,305,0 9 368030 rs10972587 T C 882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.481;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-1.181;SOR=0.709 GT:AD:DP:GQ:PL 0/1:50,38:88:99:911,0,1275 9 368128 rs17673268 C T 1232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-1.902;SOR=0.976 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1261,0,1165 9 421032 rs2297079 C G 2438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.242;SOR=0.993 GT:AD:DP:GQ:PL 0/1:116,101:217:99:2467,0,2787 9 429719 rs7854035 T C 5660.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5689,558,0 9 432330 rs7036567 C G 3284.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3313,306,0 9 433978 rs2360712 A G 2008.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2037,209,0 9 441952 rs1887957 G A 4830.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4859,503,0 9 446352 rs10814952 G C 2653.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=1.816 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2682,248,0 9 712137 rs912175 G C 5529.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5558,557,0 9 712156 rs912174 T G 5725.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5754,536,0 9 732536 rs34832656 T C 4242.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4271,411,0 9 734854 rs28513939 C G 1969.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1998,204,0 9 740901 rs2296049 C T 4847.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4876,485,0 9 742342 rs10733535 A G 6242.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6271,621,0 9 967981 rs279895 G C 3893.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.02;QD=29.5;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3922,395,0 9 968150 rs79358387 C CT 2116.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.157;QD=12.91;ReadPosRankSum=0.038;SOR=0.753 GT:AD:DP:GQ:PL 0/1:93,71:164:99:2154,0,2990 9 990840 rs7021244 C T 2804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.924;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=2.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-1.256;SOR=0.809 GT:AD:DP:GQ:PL 0/1:119,121:240:99:2833,0,3379 9 2029199 rs10964471 G A 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.163;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.93;SOR=0.807 GT:AD:DP:GQ:PL 0/1:88,72:160:99:1601,0,2421 9 2039776 rs376509101 ACAG A 664.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.648;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.61;ReadPosRankSum=0.115;SOR=0.684 GT:AD:DP:GQ:PL 0/1:154,30:184:99:702,0,5683 9 2622278 rs2219143 G A 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.807;QD=14.11;ReadPosRankSum=-0.844;SOR=0.465 GT:AD:DP:GQ:PL 0/1:67,106:173:99:2469,0,1620 9 2717922 rs10967705 C G 2870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-1.908;SOR=0.788 GT:AD:DP:GQ:PL 0/1:124,114:238:99:2899,0,3152 9 2718498 rs10967709 A G 2988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=0.329;SOR=0.751 GT:AD:DP:GQ:PL 0/1:96,121:217:99:3017,0,2311 9 2729475 rs41312842 C T 1717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.55;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=1.166;SOR=0.641 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1746,0,1804 9 2729686 rs12352254 C G 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.266;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=5.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.655;SOR=0.431 GT:AD:DP:GQ:PL 0/1:64,67:131:99:1583,0,1668 9 2729733 rs41306094 T C 1525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.23;ReadPosRankSum=0.015;SOR=0.478 GT:AD:DP:GQ:PL 0/1:37,57:94:99:1554,0,924 9 2804393 rs12171 A G 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.25;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=2.172;SOR=0.633 GT:AD:DP:GQ:PL 0/1:68,74:142:99:1832,0,1449 9 2811505 rs2270888 G A 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=3.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.568;SOR=0.446 GT:AD:DP:GQ:PL 0/1:74,63:137:99:1471,0,1816 9 2828765 rs2173904 C G 556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.968;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=0.706;SOR=1.051 GT:AD:DP:GQ:PL 0/1:30,24:54:99:585,0,616 9 3271018 rs41314211 G A 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.235;SOR=0.636 GT:AD:DP:GQ:PL 0/1:66,68:134:99:1493,0,1564 9 4118111 rs6415788 G T 2092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.376;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=7.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=1.014;SOR=0.284 GT:AD:DP:GQ:PL 0/1:57,96:153:99:2121,0,1603 9 4118208 rs806052 A G 7622.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=32.58;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7651,702,0 9 4564432 rs2228622 G A 2755.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2784,279,0 9 4844507 rs295259 G T 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=-1.398;SOR=0.312 GT:AD:DP:GQ:PL 0/1:45,29:74:99:722,0,1300 9 5081780 rs2230724 G A 2121.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2150,213,0 9 5557672 rs7854303 T C 4393.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4422,429,0 9 5720172 rs10758700 C G 698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=-0.241;SOR=0.487 GT:AD:DP:GQ:PL 0/1:52,29:81:99:727,0,1398 9 5732483 rs7850299 T C 754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.421;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.025;SOR=0.826 GT:AD:DP:GQ:PL 0/1:26,30:56:99:783,0,590 9 5738545 . CT C 183.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.07;ReadPosRankSum=-1.947;SOR=1.002 GT:AD:DP:GQ:PL 0/1:13,13:36:99:221,0,200 9 5762533 rs1543526 A C 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.264;SOR=0.459 GT:AD:DP:GQ:PL 0/1:66,67:133:99:1537,0,1555 9 5763873 rs117881871 C A 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.178;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.837;SOR=0.599 GT:AD:DP:GQ:PL 0/1:59,51:110:99:1166,0,1406 9 5774225 rs3739648 T G 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.272;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=6.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=-0.331;SOR=1.275 GT:AD:DP:GQ:PL 0/1:79,54:133:99:1361,0,1981 9 5832728 rs1131727 G C 2161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.188;SOR=0.679 GT:AD:DP:GQ:PL 0/1:72,84:156:99:2190,0,1838 9 5892525 rs2233178 C T 1949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.766;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-1.107;SOR=0.705 GT:AD:DP:GQ:PL 0/1:64,91:155:99:1978,0,1457 9 5923326 rs7045445 C T 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.773;SOR=0.73 GT:AD:DP:GQ:PL 0/1:39,37:76:99:881,0,959 9 5929167 rs7029054 T C 690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.06;ReadPosRankSum=-0.661;SOR=0.411 GT:AD:DP:GQ:PL 0/1:15,28:43:99:719,0,304 9 5968416 rs3739649 A G 3660.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3689,339,0 9 5969249 rs10739080 A G 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.912;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=5.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.328;SOR=0.851 GT:AD:DP:GQ:PL 0/1:71,68:139:99:1839,0,1701 9 5988333 rs2291055 C T 1701.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.64;ReadPosRankSum=-0.028;SOR=0.918 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1730,140,0 9 6007500 rs1061767 G A 2760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.724;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=0.973;SOR=0.489 GT:AD:DP:GQ:PL 0/1:87,107:194:99:2789,0,2516 9 6328947 rs3847262 T C 2728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.077;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.394;SOR=0.706 GT:AD:DP:GQ:PL 0/1:128,106:236:99:2757,0,3265 9 6533010 rs2228098 C G 1433.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.79;QD=33.34;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1462,129,0 9 6984236 rs2296067 G A 3194.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3223,332,0 9 7046901 rs1407856 C G 959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=2.166;SOR=0.663 GT:AD:DP:GQ:PL 0/1:32,44:76:99:988,0,701 9 7076463 rs1570512 G A 2553.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.501 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2582,252,0 9 7103816 rs3763651 C T 1876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=1.296;SOR=0.572 GT:AD:DP:GQ:PL 0/1:68,78:146:99:1905,0,1779 9 7174673 rs913588 G A 1575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-0.725;SOR=0.836 GT:AD:DP:GQ:PL 0/1:82,73:155:99:1604,0,2032 9 8331574 rs146237556 A AAACTTACCATTCTTGAACTGT 2244.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.81;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=13.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.82;ReadPosRankSum=-0.077;SOR=1.779 GT:AD:DP:GQ:PL 0/1:74,52:126:99:2282,0,4680 9 8341280 . GA G 132.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.391;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.671;QD=1.62;ReadPosRankSum=1.207;SOR=0.586 GT:AD:DP:GQ:PL 0/1:65,17:89:99:170,0,1514 9 8436703 rs1359118 C G 2110.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.362 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2139,212,0 9 8454566 rs7031287 T C 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=1.747;SOR=0.873 GT:AD:DP:GQ:PL 0/1:47,57:104:99:1409,0,1019 9 8460591 rs34577174 A G 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.239;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.93;SOR=0.951 GT:AD:DP:GQ:PL 0/1:46,45:91:99:1183,0,1060 9 8484397 rs61602377 TA T 1779.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.343;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.197;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.42;ReadPosRankSum=-1.007;SOR=2.062 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1817,172,0 9 8485834 rs35929428 G A 1841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.009;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.77;ReadPosRankSum=-0.626;SOR=0.589 GT:AD:DP:GQ:PL 0/1:126,84:210:99:1870,0,3143 9 12704725 rs2733832 C T 625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.229;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.28;ReadPosRankSum=-0.603;SOR=0.84 GT:AD:DP:GQ:PL 0/1:58,28:86:99:654,0,1453 9 12708958 rs147565972 T TA 1425.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.255;QD=18.05;ReadPosRankSum=1.947;SOR=0.472 GT:AD:DP:GQ:PL 0/1:34,45:79:99:1463,0,899 9 12775861 rs139315731 T TGGCGGCGGC 4695.73 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=51.04;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,92:96:99:4733,321,0 9 12775889 rs3750501 A G 3775.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=30.7;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3804,367,0 9 13112116 rs10809904 A G 4332.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4361,455,0 9 13150531 rs10756457 T C 4244.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4273,399,0 9 13176312 rs2274856 C T 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.276;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.994;SOR=0.985 GT:AD:DP:GQ:PL 0/1:84,64:148:99:1502,0,2065 9 13193320 . GA G 63.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.066;ClippingRankSum=0;DP=128;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.59;ReadPosRankSum=-0.064;SOR=0.5 GT:AD:DP:GQ:PL 0/1:91,17:114:99:101,0,2212 9 13206106 rs368811859 TA T 440.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.19;ReadPosRankSum=0.737;SOR=0.974 GT:AD:DP:GQ:PL 0/1:57,28:101:99:478,0,1226 9 14662260 rs17215796 A G 4038.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4067,422,0 9 14720193 rs61759465 C T 1906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.558;SOR=0.776 GT:AD:DP:GQ:PL 0/1:86,85:171:99:1935,0,2101 9 14722146 rs57310634 T TC 2213.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.888;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.805;QD=16.04;ReadPosRankSum=1.202;SOR=0.325 GT:AD:DP:GQ:PL 0/1:53,85:138:99:2251,0,1234 9 14722477 rs3747532 G C 1919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.408;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=1.208;SOR=0.641 GT:AD:DP:GQ:PL 0/1:98,74:172:99:1948,0,2565 9 14737506 rs10961689 T G 5369.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5398,551,0 9 14775779 rs1874108 A G 2200.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.99;QD=28.96;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2229,228,0 9 14775853 rs1032474 A G 4194.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=29.13;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4223,431,0 9 14801710 rs35870000 C A 4408.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4437,464,0 9 14846036 rs2779500 C G 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.9;SOR=0.973 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1307,0,1753 9 14851617 rs2818940 T C 500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.307;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=5.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.44;ReadPosRankSum=1.418;SOR=0.287 GT:AD:DP:GQ:PL 0/1:60,32:92:99:529,0,1429 9 15188106 rs1407977 T C 4471.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=1.142 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4500,458,0 9 15458080 rs35960449 A AT 531.27 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.522;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=0.456;QD=19.68;ReadPosRankSum=-0.321;SOR=0.527 GT:AD:DP:GQ:PL 0/1:4,23:34:17:566,0,17 9 15472611 rs113876575 G GA 55.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.31;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.36;ReadPosRankSum=0.189;SOR=0.53 GT:AD:DP:GQ:PL 0/1:132,21:160:93:93,0,2766 9 15784496 rs2382540 C G 808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.387;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.62;SOR=0.391 GT:AD:DP:GQ:PL 0/1:25,35:60:99:837,0,750 9 15784631 rs1539172 A G 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.608;SOR=0.483 GT:AD:DP:GQ:PL 0/1:57,44:101:99:994,0,1413 9 16738338 rs35475650 GA G 2772.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=4.31;MLEAC=2;MLEAF=1;MQ=60.89;MQRankSum=0.338;QD=24.76;ReadPosRankSum=-1.703;SOR=1.167 GT:AD:DP:GQ:PL 1/1:1,111:116:99:2810,335,0 9 17135115 rs41306071 C T 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.47;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.397;SOR=0.656 GT:AD:DP:GQ:PL 0/1:100,121:221:99:2636,0,2522 9 17135434 rs12003380 G C 3118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.096;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.52;ReadPosRankSum=2.308;SOR=0.895 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,83:178:99:0|1:17135434_G_C:3147,0,5477 9 17135443 rs111496959 T C 3089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.78;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.28;ReadPosRankSum=1.296;SOR=0.98 GT:AD:DP:GQ:PGT:PID:PL 0/1:89,80:169:99:0|1:17135434_G_C:3118,0,5326 9 17235642 rs67017076 AT A 2114.73 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.66;QD=26.43;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2152,240,0 9 17273731 rs3808795 A G 728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.312;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=-1.538;SOR=0.512 GT:AD:DP:GQ:PL 0/1:25,27:52:99:757,0,639 9 17273878 rs12376938 A G 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.628;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.818;SOR=0.91 GT:AD:DP:GQ:PL 0/1:31,30:61:99:805,0,767 9 17309232 rs185446802 T C 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.366;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=1.376;SOR=0.664 GT:AD:DP:GQ:PL 0/1:54,37:91:99:944,0,1336 9 17342383 rs1442527 C T 3457.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3486,357,0 9 17394536 rs7035276 C T 2774.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.775 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2803,262,0 9 17394996 rs3739489 T C 6280.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6309,584,0 9 17409366 rs2780211 G A 3283.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3312,339,0 9 17457512 rs35399020 TA T 1585.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.72;QD=25.58;SOR=2.019 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1623,186,0 9 17464479 . C CT 84.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.3;ReadPosRankSum=0.432;SOR=0.693 GT:AD:DP:GQ:PL 0/1:54,11:68:99:122,0,1083 9 18504916 rs2277160 T A 7588.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7617,788,0 9 18775810 rs934472 C A 6777.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.66;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,245:245:99:6806,731,0 9 18776840 rs1549986 A C 9075.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.004 GT:AD:DP:GQ:PL 1/1:0,292:292:99:9104,875,0 9 18777196 rs41268983 A C 4177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=4.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.867;SOR=0.719 GT:AD:DP:GQ:PL 0/1:171,165:336:99:4206,0,4378 9 18777268 rs117786774 C T 3823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.912;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.022;SOR=0.746 GT:AD:DP:GQ:PL 0/1:202,160:362:99:3852,0,4788 9 18777304 rs183130162 C T 3755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-0.103;SOR=0.668 GT:AD:DP:GQ:PL 0/1:201,157:358:99:3784,0,5197 9 18777368 rs7033684 T C 9224.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9253,930,0 9 18777422 rs45579937 G A 3013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.872;SOR=0.742 GT:AD:DP:GQ:PL 0/1:146,122:268:99:3042,0,3789 9 18817246 rs1433809 A C 3947.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.084;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=3.765;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.61;ReadPosRankSum=-0.352;SOR=0.789 GT:AD:DP:GQ:PL 1/1:1,137:138:99:3976,401,0 9 18826261 rs35525189 GT G 2255.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=7.738;MLEAC=2;MLEAF=1;MQ=60.39;MQRankSum=0.474;QD=21.28;ReadPosRankSum=0.179;SOR=0.092 GT:AD:DP:GQ:PL 1/1:5,101:106:99:2293,184,0 9 18829952 rs41304755 A G 2131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.916;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=0.631;SOR=0.897 GT:AD:DP:GQ:PL 0/1:129,93:222:99:2160,0,3213 9 18928039 rs1052448 A G 3479.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=1.365 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3508,327,0 9 18950787 rs6475273 G A 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.119;SOR=0.695 GT:AD:DP:GQ:PL 0/1:72,70:142:99:1577,0,1796 9 18950895 rs7021572 T C 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=0.624;SOR=0.558 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1327,0,1664 9 19058425 rs11515236 G A 271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.592;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.881;MLEAC=1;MLEAF=0.5;MQ=54.33;MQRankSum=-6.108;QD=3.67;ReadPosRankSum=-0.044;SOR=1.321 GT:AD:DP:GQ:PL 0/1:57,17:74:99:300,0,1484 9 19058743 rs10511670 G C 784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.158;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=6.951;MLEAC=1;MLEAF=0.5;MQ=57.93;MQRankSum=-1.229;QD=8.17;ReadPosRankSum=-2.187;SOR=1.093 GT:AD:DP:GQ:PL 0/1:63,33:96:99:813,0,1726 9 19058821 rs10511671 A G 830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.728;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.47;MQRankSum=-2.154;QD=9.44;ReadPosRankSum=-0.795;SOR=0.748 GT:AD:DP:GQ:PL 0/1:53,35:88:99:859,0,1410 9 19341045 rs928128 A G 1145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.163;SOR=0.459 GT:AD:DP:GQ:PL 0/1:62,53:115:99:1174,0,1444 9 19573483 rs149743267 AACACACACACACACACACACACACAC A 507.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.906;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=-1.565;QD=16.38;ReadPosRankSum=0.951;SOR=0.941 GT:AD:DP:GQ:PL 0/1:9,22:33:99:545,0,165 9 19576949 rs2383101 T G 2512.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=28.23;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2541,267,0 9 19622268 rs4977308 T C 2616.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2645,267,0 9 20740355 rs57561334 G GT 399.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=0.11;SOR=0.906 GT:AD:DP:GQ:PL 0/1:10,19:35:99:437,0,149 9 20866974 rs7875872 C G 1860.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1889,195,0 9 20885240 rs2383156 G A 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-0.39;SOR=0.941 GT:AD:DP:GQ:PL 0/1:36,43:79:99:1050,0,941 9 21077716 rs1051922 G A 1699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-0.858;SOR=1.003 GT:AD:DP:GQ:PL 0/1:75,68:143:99:1728,0,1953 9 21187311 rs1062571 C T 4227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=6.908;MLEAC=1;MLEAF=0.5;MQ=56.53;MQRankSum=0.597;QD=11.74;ReadPosRankSum=0.266;SOR=1.015 GT:AD:DP:GQ:PL 0/1:188,172:360:99:4256,0,4944 9 21206509 rs28368149 G T 2946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.27;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=6.896;MLEAC=1;MLEAF=0.5;MQ=55.9;MQRankSum=-9.581;QD=11.25;ReadPosRankSum=0.637;SOR=1.067 GT:AD:DP:GQ:PL 0/1:139,123:262:99:2975,0,3395 9 21206743 rs112963053 G T 2932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.471;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.5;MQ=45.7;MQRankSum=0.305;QD=12.81;ReadPosRankSum=-0.625;SOR=0.859 GT:AD:DP:GQ:PL 0/1:114,115:229:99:2961,0,3479 9 21206916 rs28368145 T A 5942.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.5;MQ=52.18;MQRankSum=-16.844;QD=18.34;ReadPosRankSum=2.104;SOR=0.651 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,158:324:99:0|1:21206916_T_A:5971,0,6912 9 21206919 rs28368144 G C 6033.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.393;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.5;MQ=52.28;MQRankSum=-17.124;QD=18.17;ReadPosRankSum=2.822;SOR=0.758 GT:AD:DP:GQ:PGT:PID:PL 0/1:174,158:332:99:0|1:21206916_T_A:6062,0,6903 9 21207000 rs10113875 C G 6504.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DB;DP=374;ExcessHet=3.0103;FS=10.11;MLEAC=1;MLEAF=0.5;MQ=52.28;MQRankSum=-17.995;QD=17.39;ReadPosRankSum=0.438;SOR=0.886 GT:AD:DP:GQ:PGT:PID:PL 0/1:201,173:374:99:0|1:21207000_C_G:6533,0,8096 9 21207005 rs10113876 C G 6389.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.787;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=12.413;MLEAC=1;MLEAF=0.5;MQ=52.29;MQRankSum=-17.701;QD=17.65;ReadPosRankSum=0.329;SOR=0.987 GT:AD:DP:GQ:PGT:PID:PL 0/1:196,166:362:99:0|1:21207000_C_G:6418,0,8008 9 21207031 rs10117060 T C 4752.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.631;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=8.632;MLEAC=1;MLEAF=0.5;MQ=52.57;MQRankSum=-16.696;QD=14.85;ReadPosRankSum=1.041;SOR=1.11 GT:AD:DP:GQ:PGT:PID:PL 0/1:191,129:320:99:0|1:21207031_T_C:4781,0,7802 9 21207037 rs10119910 A T 4636.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.269;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=8.639;MLEAC=1;MLEAF=0.5;MQ=52.52;MQRankSum=-16.459;QD=14.44;ReadPosRankSum=1.452;SOR=1.098 GT:AD:DP:GQ:PGT:PID:PL 0/1:196,125:321:99:0|1:21207031_T_C:4665,0,7903 9 21216728 rs3919593 T C 4076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.252;QD=12.82;ReadPosRankSum=0.434;SOR=0.672 GT:AD:DP:GQ:PL 0/1:140,178:318:99:4105,0,3155 9 21216864 rs28368164 A G 3795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.644;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=3.568;MLEAC=1;MLEAF=0.5;MQ=55.63;MQRankSum=-12.214;QD=11.47;ReadPosRankSum=-2.166;SOR=0.694 GT:AD:DP:GQ:PL 0/1:185,146:331:99:3824,0,4828 9 21216908 rs28368163 C G 4351.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.252;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.5;MQ=53.63;MQRankSum=-16.213;QD=14.51;ReadPosRankSum=-1.533;SOR=0.589 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,120:300:99:0|1:21216908_C_G:4380,0,7778 9 21216910 rs28368162 A G 4351.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.556;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=53.45;MQRankSum=-15.885;QD=14.95;ReadPosRankSum=-1.091;SOR=0.618 GT:AD:DP:GQ:PGT:PID:PL 0/1:177,114:291:99:0|1:21216908_C_G:4380,0,7778 9 21216934 rs28368161 G A 3175.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.5;MQ=55.17;MQRankSum=-13.052;QD=9.99;ReadPosRankSum=-0.724;SOR=0.588 GT:AD:DP:GQ:PL 0/1:186,132:318:99:3204,0,4768 9 21217022 rs28368160 C G 3599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.043;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.3;MQRankSum=-6.296;QD=12.95;ReadPosRankSum=2.85;SOR=0.686 GT:AD:DP:GQ:PL 0/1:146,132:278:99:3628,0,4067 9 21217111 rs28368159 A T 3325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.262;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.027;QD=12.74;ReadPosRankSum=0.731;SOR=0.634 GT:AD:DP:GQ:PL 0/1:134,127:261:99:3354,0,3528 9 21217166 rs28368158 T C 4104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.767;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.28;MQRankSum=1.132;QD=12.04;ReadPosRankSum=0.049;SOR=0.682 GT:AD:DP:GQ:PL 0/1:175,166:341:99:4133,0,4233 9 21217320 rs28368156 A G 2564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.879;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.15;MLEAC=1;MLEAF=0.5;MQ=57.86;MQRankSum=-0.327;QD=13.02;ReadPosRankSum=-0.471;SOR=0.585 GT:AD:DP:GQ:PL 0/1:94,103:197:99:2593,0,2267 9 21227622 rs9298814 A C 2356.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.061;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=4.424;MLEAC=1;MLEAF=0.5;MQ=53.04;MQRankSum=-14.288;QD=9.21;ReadPosRankSum=2.012;SOR=0.478 GT:AD:DP:GQ:PL 0/1:159,97:256:99:2385,0,3970 9 21227651 rs7025879 A G 2843.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.642;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.5;MQ=52.52;MQRankSum=-16.518;QD=8.97;ReadPosRankSum=-2.948;SOR=0.629 GT:AD:DP:GQ:PL 0/1:198,119:317:99:2872,0,4908 9 21228002 rs200400518 A AT 6235.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.872;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=58.33;MQRankSum=-0.318;QD=14.5;ReadPosRankSum=0.737;SOR=0.784 GT:AD:DP:GQ:PL 0/1:228,202:431:99:6273,0,7209 9 21239447 rs28383771 G A 4982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0;DB;DP=497;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.5;MQ=59.12;MQRankSum=4.721;QD=10.09;ReadPosRankSum=0.729;SOR=0.483 GT:AD:DP:GQ:PL 0/1:276,218:494:99:5011,0,7434 9 21304803 rs10757212 G A 2715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.904;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.254;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0;QD=11.91;ReadPosRankSum=1.24;SOR=0.864 GT:AD:DP:GQ:PL 0/1:121,107:228:99:2744,0,3040 9 21333254 rs41270133 T C 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.537;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=1.212;SOR=0.622 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1830,0,1550 9 21440535 rs1758567 T C 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.169;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=5.928;MLEAC=1;MLEAF=0.5;MQ=52.13;MQRankSum=-5.398;QD=7.3;ReadPosRankSum=0.719;SOR=0.385 GT:AD:DP:GQ:PL 0/1:115,59:174:99:1298,0,2895 9 21440994 rs33965070 C G 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=49.38;MQRankSum=-0.698;QD=11.45;ReadPosRankSum=-0.753;SOR=0.636 GT:AD:DP:GQ:PL 0/1:97,91:188:99:2181,0,2498 9 21802922 rs117769854 C G 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.785;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.829;QD=11.1;ReadPosRankSum=1.694;SOR=0.921 GT:AD:DP:GQ:PL 0/1:83,59:142:99:1605,0,2239 9 21816758 rs7023954 G A 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.046;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.547;SOR=0.963 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1180,0,1075 9 21854740 rs10965163 C T 2281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-1.385;SOR=0.665 GT:AD:DP:GQ:PL 0/1:80,97:177:99:2310,0,2121 9 22447655 rs558612 T A 2735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.274;SOR=0.644 GT:AD:DP:GQ:PL 0/1:115,114:229:99:2764,0,2966 9 24545513 rs6475797 G A 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.064;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=1.147;SOR=0.696 GT:AD:DP:GQ:PL 0/1:96,96:192:99:2344,0,2386 9 25677698 rs72631815 A C 3236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.531;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=4.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=-0.424;SOR=0.985 GT:AD:DP:GQ:PL 0/1:104,123:227:99:3265,0,2515 9 25677933 rs35110225 T C 9355.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,285:285:99:9384,855,0 9 25677953 rs34498078 T C 10546.8 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,323:323:99:10575,970,0 9 25678122 rs72631814 G C 3448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.63;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=4.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-1.665;SOR=0.472 GT:AD:DP:GQ:PL 0/1:114,136:250:99:3477,0,3000 9 27062721 rs3429 C T 619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.904;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.792;SOR=0.54 GT:AD:DP:GQ:PL 0/1:24,26:50:99:648,0,494 9 27183463 rs682632 A C 3853.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3882,413,0 9 27197368 rs35357088 T C 1703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.513;SOR=0.627 GT:AD:DP:GQ:PL 0/1:86,76:162:99:1732,0,2144 9 27202870 rs639225 A G 2095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-1.35;SOR=0.63 GT:AD:DP:GQ:PL 0/1:71,87:158:99:2124,0,1648 9 27203134 rs638203 A G 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.989;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=5.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.936;SOR=1.207 GT:AD:DP:GQ:PL 0/1:63,39:102:99:1024,0,1666 9 27213580 rs3737188 T C 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=0.236;SOR=0.845 GT:AD:DP:GQ:PL 0/1:39,55:94:99:1333,0,912 9 27220066 rs2273719 G A 3007.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3036,300,0 9 27229141 rs2273715 T C 2443.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.367 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2472,246,0 9 27296595 rs7044345 C G 1540.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=1.562 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1569,144,0 9 27524731 rs700785 A G 4546.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4575,482,0 9 27548433 rs67374700 GAAA G 238.74 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.14;ClippingRankSum=-0;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=34.11;ReadPosRankSum=0.253;SOR=1.022 GT:AD:DP:GQ:PL 1/1:2,5:10:11:258,11,0 9 27556780 rs10122902 G A 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.174;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=3.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.008;SOR=0.342 GT:AD:DP:GQ:PL 0/1:33,39:72:99:994,0,990 9 32425910 rs3780473 A G 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.646;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.199;SOR=0.57 GT:AD:DP:GQ:PL 0/1:70,47:117:99:1201,0,1723 9 32459450 rs3205166 T G 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=2.507;SOR=0.66 GT:AD:DP:GQ:PL 0/1:58,70:128:99:1640,0,1328 9 32481500 rs201451565 TA T 124.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.575;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.27;ReadPosRankSum=0.157;SOR=0.497 GT:AD:DP:GQ:PL 0/1:40,15:60:99:162,0,848 9 32485288 rs71302893 C CA 990.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.185;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.76;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.16;ReadPosRankSum=-2.025;SOR=1.863 GT:AD:DP:GQ:PL 1/1:3,38:46:61:1028,61,0 9 32526146 rs10813831 G A 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.595;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-0.061;SOR=0.606 GT:AD:DP:GQ:PL 0/1:40,49:89:99:1107,0,825 9 32541532 rs12348918 A G 2046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.657;SOR=0.791 GT:AD:DP:GQ:PL 0/1:116,98:214:99:2075,0,2555 9 32542204 rs10971019 A G 2413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.135;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=4.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-2.366;SOR=0.803 GT:AD:DP:GQ:PL 0/1:103,92:195:99:2442,0,2477 9 32635389 rs55895024 C T 5148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.622;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-1.575;SOR=0.747 GT:AD:DP:GQ:PL 0/1:199,213:412:99:5177,0,5121 9 32974570 rs34600530 G GA 508.27 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.33;ReadPosRankSum=0.378;SOR=1.17 GT:AD:DP:GQ:PL 0/1:3,22:25:1:543,0,1 9 32986040 rs1981011 A C 173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.65;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.95;ReadPosRankSum=0.518;SOR=1.204 GT:AD:DP:GQ:PL 0/1:12,13:25:99:202,0,180 9 32986041 rs10123944 C A 584.96 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.454;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=3.244;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.59;ReadPosRankSum=-1.301;SOR=2.124 GT:AD:DP:GQ:PL 1/1:2,20:26:5:612,5,0 9 33026572 rs20583 T C 4470.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4499,442,0 9 33062183 rs112622707 GA G 39.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.411;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.29;ReadPosRankSum=1.091;SOR=0.795 GT:AD:DP:GQ:PL 0/1:115,21:145:77:77,0,2820 9 33240225 rs706107 G A 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.533;SOR=0.743 GT:AD:DP:GQ:PL 0/1:80,80:160:99:1830,0,1850 9 33264540 rs1071545 C G 12366.8 PASS AC=2;AF=1;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.29;SOR=0.942 GT:AD:DP:GQ:PL 1/1:0,383:383:99:12395,1149,0 9 33386395 rs2484931 T C 5805.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.87;QD=31.9;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5834,546,0 9 33395196 rs642636 A G 2638.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.61;QD=29.32;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2667,270,0 9 33442952 rs2228332 G A 4757.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4786,505,0 9 33442986 rs2231231 A C 3746.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3775,400,0 9 33447424 rs591810 C G 5520.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5549,578,0 9 33465784 rs115142129 G A 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=1.746;SOR=0.671 GT:AD:DP:GQ:PL 0/1:116,108:224:99:2452,0,2647 9 33524684 rs3843933 G A 7090.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7119,718,0 9 33566234 rs62559879 C T 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.5;MQ=56.12;MQRankSum=-0.003;QD=8.41;ReadPosRankSum=0.234;SOR=0.59 GT:AD:DP:GQ:PL 0/1:72,45:117:99:1012,0,1771 9 33796672 rs77765166 T C 328.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=-12.612;QD=0.89;ReadPosRankSum=0.879;SOR=0.666 GT:AD:DP:GQ:PGT:PID:PL 0/1:337,33:370:99:0|1:33796672_T_C:357,0,17790 9 33796673 rs76740888 G A 328.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=-12.63;QD=0.89;ReadPosRankSum=1.148;SOR=0.673 GT:AD:DP:GQ:PGT:PID:PL 0/1:338,33:371:99:0|1:33796672_T_C:357,0,17790 9 33798017 rs855581 A G 9993.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.064;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.66;ReadPosRankSum=-0.923;SOR=0.731 GT:AD:DP:GQ:PL 1/1:2,324:326:99:10022,928,0 9 33927899 rs307692 G A 8142.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8171,858,0 9 34017106 rs1785506 C T 4593.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.84;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4622,494,0 9 34089395 rs2296897 T C 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.571;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=1.824;SOR=0.693 GT:AD:DP:GQ:PL 0/1:63,68:131:99:1863,0,1439 9 34093274 rs16935392 G C 1866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.546;SOR=0.658 GT:AD:DP:GQ:PL 0/1:99,80:179:99:1895,0,2541 9 34256347 rs10814083 C T 2549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.981;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.655;SOR=0.947 GT:AD:DP:GQ:PL 0/1:116,95:211:99:2578,0,3048 9 34290407 rs11790773 C T 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=2.003;SOR=0.536 GT:AD:DP:GQ:PL 0/1:33,41:74:99:885,0,775 9 34306410 rs17350674 C A 1169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-1.717;SOR=0.922 GT:AD:DP:GQ:PL 0/1:48,52:100:99:1198,0,1188 9 34310927 rs10972048 T C 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.572;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.487;SOR=0.896 GT:AD:DP:GQ:PL 0/1:67,54:121:99:1264,0,1609 9 34372783 rs4879781 G C 6691.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.64;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6720,615,0 9 34372873 rs4879782 C G 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=0.704;SOR=0.64 GT:AD:DP:GQ:PL 0/1:82,96:178:99:2503,0,2141 9 34385791 rs41303241 G T 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.893;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=5.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.419;SOR=0.369 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1407,0,2051 9 34397545 rs11790577 A G 4934.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4963,492,0 9 34622389 rs3808869 A C 3353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.751;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-0.376;SOR=0.742 GT:AD:DP:GQ:PL 0/1:212,155:367:99:3382,0,4875 9 34623718 rs10814129 G A 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.408;SOR=0.568 GT:AD:DP:GQ:PL 0/1:90,72:162:99:1828,0,2408 9 34627940 rs13283357 C T 3176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.792;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.148;SOR=0.7 GT:AD:DP:GQ:PL 0/1:156,138:294:99:3205,0,4150 9 34635598 rs4879809 T C 5122.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.348 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5151,486,0 9 34723744 rs4878588 C A 6817.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.79;QD=30.85;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6846,663,0 9 34723935 rs2297134 C T 5257.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.58;QD=28.57;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5286,551,0 9 34724059 rs117821239 G A 2716.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.76;QD=34.83;SOR=3.316 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2745,235,0 9 34724241 rs3739881 C A 6745.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.848;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.95;MQRankSum=-0.456;QD=30.52;ReadPosRankSum=1.477;SOR=0.297 GT:AD:DP:GQ:PL 1/1:1,220:221:99:6774,650,0 9 34724786 rs72617336 G A 9579.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.19;QD=43.54;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,220:220:99:1|1:34724786_G_A:9608,665,0 9 34724796 rs150496452 T A 9508.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.68;QD=44.85;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,212:212:99:1|1:34724786_G_A:9537,656,0 9 34725047 rs78716275 C T 6265.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.09;QD=30.87;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6294,609,0 9 34725368 rs151104708 A G 67.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=22.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 9 34725438 rs200810176 A G 42.74 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.12;QD=21.37;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:70,6,0 9 34725742 rs62547039 T C 6195.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.27;QD=29.79;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6224,624,0 9 34726204 rs521574 G A 179.84 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.81;QD=29.97;SOR=3.912 GT:AD:DP:GQ:PL 1/1:0,6:6:18:208,18,0 9 35043291 rs615474 G T 6852.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6881,668,0 9 35044493 rs2298312 T A 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=7.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=0.803;SOR=0.895 GT:AD:DP:GQ:PL 0/1:110,70:180:99:1637,0,3001 9 35045693 rs3824552 C A 2881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.384;SOR=0.779 GT:AD:DP:GQ:PL 0/1:131,124:255:99:2910,0,3256 9 35060302 rs684562 T C 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.377;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.19;ReadPosRankSum=-1.032;SOR=0.845 GT:AD:DP:GQ:PL 0/1:54,87:141:99:2452,0,1176 9 35061693 rs11272867 G GACAGTACACAA 1045.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.239;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.983;QD=19.73;ReadPosRankSum=-0.829;SOR=1.286 GT:AD:DP:GQ:PL 0/1:25,28:53:99:1083,0,1393 9 35062972 rs514492 C T 3628.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3657,389,0 9 35074917 rs587118 T C 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.204;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.99;ReadPosRankSum=0.149;SOR=0.707 GT:AD:DP:GQ:PL 0/1:57,73:130:99:1977,0,1317 9 35093020 rs568300 T C 6811.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.68;ReadPosRankSum=-0.426;SOR=0.481 GT:AD:DP:GQ:PL 1/1:1,214:215:99:6840,606,0 9 35094373 rs2240116 G A 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-1.692;SOR=0.536 GT:AD:DP:GQ:PL 0/1:55,64:119:99:1546,0,1494 9 35105257 rs7030595 G A 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.112;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=1.302;SOR=0.687 GT:AD:DP:GQ:PL 0/1:106,93:199:99:2152,0,2444 9 35107858 rs7039828 C T 7240.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.84;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7269,642,0 9 35546735 rs1535422 A G 5995.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,185:185:99:6024,554,0 9 35562549 rs755774 G A 2850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.62;ReadPosRankSum=0.889;SOR=0.871 GT:AD:DP:GQ:PL 0/1:84,111:195:99:2879,0,2081 9 35606884 rs2275422 G A 2193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=1.178;SOR=0.749 GT:AD:DP:GQ:PL 0/1:84,98:182:99:2222,0,1923 9 35616583 rs2095858 A T 1195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=0.822;SOR=0.468 GT:AD:DP:GQ:PL 0/1:37,55:92:99:1224,0,821 9 35658019 . T TCCTCAGCTTCACAGA 1988.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.217;QD=15.66;ReadPosRankSum=1.459;SOR=0.591 GT:AD:DP:GQ:PL 0/1:75,52:127:99:2026,0,4567 9 35660990 rs1339374 A G 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.352;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=1.176;SOR=0.705 GT:AD:DP:GQ:PL 0/1:103,85:188:99:2084,0,2590 9 35674053 rs2071676 G A 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=5.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=-0.965;SOR=0.368 GT:AD:DP:GQ:PL 0/1:63,64:127:99:1735,0,1697 9 35684822 rs3215700 C CG 5637.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.174;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;MQRankSum=0.274;QD=26.34;ReadPosRankSum=-1.223;SOR=0.602 GT:AD:DP:GQ:PL 1/1:7,207:222:99:5675,470,0 9 35708425 rs35461988 T C 2880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=3.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-1.078;SOR=0.528 GT:AD:DP:GQ:PL 0/1:125,121:246:99:2909,0,2926 9 35711806 rs2249250 G T 4753.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.406 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4782,465,0 9 35713181 rs877365 C T 4032.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4061,403,0 9 35870001 rs7044405 T C 5826.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.35;ReadPosRankSum=-0.655;SOR=0.227 GT:AD:DP:GQ:PL 1/1:1,191:192:99:5855,538,0 9 35870225 rs72727089 G A 5110.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5139,483,0 9 35906583 rs143611048 TCCA T 609.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.45;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.712;QD=6.29;ReadPosRankSum=0.244;SOR=0.385 GT:AD:DP:GQ:PL 0/1:57,40:97:99:647,0,2119 9 35906624 rs75458097 G A 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.11;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.045;QD=10.07;ReadPosRankSum=-0.83;SOR=0.666 GT:AD:DP:GQ:PL 0/1:81,76:157:99:1609,0,1825 9 35957355 rs2233568 G A 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.976;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=10.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.847;SOR=1.308 GT:AD:DP:GQ:PL 0/1:80,60:140:99:1500,0,2115 9 35957669 rs2233564 T C 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=2.101;SOR=0.631 GT:AD:DP:GQ:PL 0/1:98,86:184:99:2097,0,2382 9 35958047 rs2233558 T C 1616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.137;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.471;SOR=0.563 GT:AD:DP:GQ:PL 0/1:80,74:154:99:1645,0,2033 9 36087876 rs16932912 G A 1204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.429;SOR=0.691 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1233,0,1431 9 36105264 rs11788747 A G 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.07;SOR=0.893 GT:AD:DP:GQ:PL 0/1:79,90:169:99:2059,0,1797 9 36109947 rs10972726 C A 1102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.781;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=1.582;SOR=0.602 GT:AD:DP:GQ:PL 0/1:38,50:88:99:1131,0,993 9 36110063 rs10972727 T A 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.665;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=5.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.857;SOR=1.079 GT:AD:DP:GQ:PL 0/1:65,68:133:99:1655,0,1440 9 36116970 rs3818555 C T 1132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.219;SOR=0.643 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1161,0,1156 9 36169494 rs3739610 G A 2552.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.59;SOR=2.124 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2581,228,0 9 36169598 rs3739609 T C 5389.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5418,544,0 9 36169723 rs34789048 G A 5609.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5638,560,0 9 36674842 rs2274473 C T 1629.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1658,171,0 9 36840623 rs3780135 G A 2729.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.3;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2758,299,0 9 37020622 rs2297105 A C 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.385;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.236;SOR=0.669 GT:AD:DP:GQ:PL 0/1:64,50:114:99:1403,0,1612 9 37304168 rs11422051 A AT 779.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=0.922;SOR=0.787 GT:AD:DP:GQ:PL 0/1:50,39:92:99:817,0,1016 9 37426524 rs2736664 C T 1634.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,54:54:99:1|1:37426517_C_T:1663,162,0 9 37429814 rs309458 A G 2256.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.86;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2285,243,0 9 37441808 rs309450 A G 7094.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7123,707,0 9 37486603 rs1571234 A G 6896.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6925,656,0 9 37503124 rs7047823 G A 5939.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.913 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5968,624,0 9 37537557 rs7044153 G A 7354.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7383,727,0 9 37740637 rs2281872 T C 2212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.002;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.247;SOR=0.874 GT:AD:DP:GQ:PL 0/1:82,89:171:99:2241,0,2210 9 37974743 rs1138374 T C 4779.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,164:166:99:4808,492,0 9 38068532 rs3750444 A G 1795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.817;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=0.434;SOR=0.462 GT:AD:DP:GQ:PL 0/1:66,69:135:99:1824,0,1646 9 38395940 rs2228094 T C 9295.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,286:286:99:9324,857,0 9 38396065 rs2073478 G T 9569.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9598,957,0 9 38396502 rs4878199 G A 7505.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7534,733,0 9 38424344 rs35134904 A G 387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.609;ClippingRankSum=0;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.54;ReadPosRankSum=-2.418;SOR=0.551 GT:AD:DP:GQ:PL 0/1:6,12:18:99:416,0,181 9 38571214 rs3045002 T TACA 3679.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.841;QD=17.78;ReadPosRankSum=1.223;SOR=0.642 GT:AD:DP:GQ:PL 0/1:109,98:207:99:3717,0,5223 9 38571986 rs55960030 C G 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.5;MQ=58.47;MQRankSum=-3.063;QD=20.9;ReadPosRankSum=-0.237;SOR=0.981 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,51:90:99:0|1:38571976_T_TTAAA:1909,0,3248 9 38573141 rs1974262 T A 445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.474;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=0.041;SOR=0.562 GT:AD:DP:GQ:PL 0/1:28,18:46:99:474,0,683 9 38615698 rs1832313 C T 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.06;MQRankSum=-3.308;QD=8.86;ReadPosRankSum=0.042;SOR=0.7 GT:AD:DP:GQ:PL 0/1:152,106:258:99:2314,0,3749 9 38615779 rs1765381 T C 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.837;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.5;MQ=59.03;MQRankSum=-0.974;QD=11.82;ReadPosRankSum=3.2;SOR=0.627 GT:AD:DP:GQ:PL 0/1:83,68:151:99:1813,0,2197 9 39118108 rs146758409 C T 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=3.914;MLEAC=1;MLEAF=0.5;MQ=45.85;MQRankSum=-1.935;QD=10.28;ReadPosRankSum=0.067;SOR=0.401 GT:AD:DP:GQ:PL 0/1:54,43:97:99:1025,0,1539 9 39118196 rs146296802 C A 1603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.5;MQ=45.94;MQRankSum=-0.087;QD=12.24;ReadPosRankSum=0.235;SOR=0.567 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,62:131:99:0|1:39118196_C_A:1632,0,1638 9 39118205 rs113579706 G T 6694.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.37;QD=45.23;SOR=0.748 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,148:148:99:1|1:39118196_C_A:6723,454,0 9 39118207 rs148861698 A G 6694.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.65;QD=44.34;SOR=0.706 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,151:151:99:1|1:39118196_C_A:6723,454,0 9 39132974 rs149597063 G T 4104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-0.765;QD=11.18;ReadPosRankSum=-0.634;SOR=0.872 GT:AD:DP:GQ:PL 0/1:203,164:367:99:4133,0,5164 9 39287976 rs201440467 C T 90.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.5;MQ=43.26;MQRankSum=-0.575;QD=3.24;ReadPosRankSum=0.942;SOR=0.197 GT:AD:DP:GQ:PL 0/1:20,8:28:99:119,0,537 9 39360949 rs200551382 G A 1307.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.83;QD=30.41;SOR=5.283 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1336,129,0 9 39888505 . G A 476.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=22.28;QD=23.84;SOR=6.091 GT:AD:DP:GQ:PL 1/1:0,20:20:59:505,59,0 9 40703280 rs199955241 G C 1779.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=22.64;MQRankSum=1.342;QD=26.17;ReadPosRankSum=0.934;SOR=7.054 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1808,177,0 9 40705081 rs200794609 C T 4951.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.5;MQ=36.01;MQRankSum=-0.4;QD=11.33;ReadPosRankSum=1.122;SOR=0.805 GT:AD:DP:GQ:PL 0/1:210,227:437:99:4980,0,4555 9 40705798 rs201218409 C A 5285.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.837;ClippingRankSum=0;DB;DP=469;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=37.75;MQRankSum=-0.714;QD=11.27;ReadPosRankSum=0.074;SOR=0.739 GT:AD:DP:GQ:PL 0/1:248,221:469:99:5314,0,6378 9 40772563 rs77619302 G A 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.347;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.5;MQ=46.03;MQRankSum=-1.974;QD=8.84;ReadPosRankSum=-0.6;SOR=0.68 GT:AD:DP:GQ:PL 0/1:112,78:190:99:1708,0,2691 9 40773337 rs78487056 C T 1878.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.61;MQRankSum=-2.342;QD=9.89;ReadPosRankSum=1.198;SOR=0.672 GT:AD:DP:GQ:PL 0/1:101,89:190:99:1907,0,2330 9 40775035 rs201851610 C T 491.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.81;QD=27.32;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,18:18:54:520,54,0 9 40784183 rs4339693 A G 1691.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.65;QD=32.53;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1720,156,0 9 42368549 . C T 1753.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0;DP=1233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.14;MQRankSum=-4.818;QD=1.42;ReadPosRankSum=3.236;SOR=0.763 GT:AD:DP:GQ:PL 0/1:1028,203:1231:99:1782,0,25018 9 42368628 rs200420191 C T 2072.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=1261;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40.12;MQRankSum=-4.377;QD=1.65;ReadPosRankSum=-0.066;SOR=0.701 GT:AD:DP:GQ:PL 0/1:1041,217:1258:99:2101,0,24473 9 42410290 . T C 266.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.125;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23.54;MQRankSum=0.692;QD=5.03;ReadPosRankSum=-0.533;SOR=0.182 GT:AD:DP:GQ:PL 0/1:37,16:53:99:295,0,886 9 42410368 . T C 1014.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DP=174;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.5;MQ=27.35;MQRankSum=0.252;QD=5.83;ReadPosRankSum=0.886;SOR=0.545 GT:AD:DP:GQ:PL 0/1:114,60:174:99:1043,0,2585 9 43628306 rs200978081 G A 115.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.1;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.79;MQRankSum=3.279;QD=1.61;ReadPosRankSum=-0.061;SOR=0.866 GT:AD:DP:GQ:PL 0/1:62,10:72:99:144,0,1518 9 43816656 rs199925161 T C 2041.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.182;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=27.747;MLEAC=1;MLEAF=0.5;MQ=52.24;MQRankSum=-14.356;QD=8.76;ReadPosRankSum=-3.228;SOR=2.022 GT:AD:DP:GQ:PL 0/1:147,86:233:99:2070,0,3657 9 43822686 rs200662463 C A 3508.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.5;MQ=36.82;MQRankSum=-2.274;QD=10.8;ReadPosRankSum=-1.233;SOR=0.584 GT:AD:DP:GQ:PGT:PID:PL 0/1:219,106:325:99:0|1:43822686_C_A:3537,0,9306 9 43822704 rs201563712 G A 3210.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.5;MQ=37.05;MQRankSum=-2.397;QD=10.96;ReadPosRankSum=0.38;SOR=0.569 GT:AD:DP:GQ:PGT:PID:PL 0/1:200,93:293:99:0|1:43822686_C_A:3239,0,8882 9 43822762 rs200440031 C T 1056.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.214;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.5;MQ=35.97;MQRankSum=-2.977;QD=5.9;ReadPosRankSum=1.168;SOR=0.526 GT:AD:DP:GQ:PL 0/1:119,60:179:99:1085,0,2972 9 43844193 rs199599712 G A 46.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=28.357;MLEAC=1;MLEAF=0.5;MQ=31.4;MQRankSum=-1.019;QD=1;ReadPosRankSum=0.354;SOR=1.391 GT:AD:DP:GQ:PL 0/1:40,7:47:75:75,0,1225 9 43849812 rs141780724 T G 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.584;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.51;MQRankSum=-7.884;QD=5.46;ReadPosRankSum=1.49;SOR=0.721 GT:AD:DP:GQ:PGT:PID:PL 0/1:213,52:265:99:0|1:43849812_T_G:1476,0,10108 9 43849817 rs4063192 A G 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=11.213;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.39;MQRankSum=-7.761;QD=5.04;ReadPosRankSum=1.75;SOR=0.724 GT:AD:DP:GQ:PGT:PID:PL 0/1:219,49:268:99:0|1:43849812_T_G:1379,0,10248 9 43861081 rs62536501 T G 7994.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.439;ClippingRankSum=0;DB;DP=786;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=53.18;MQRankSum=-24.531;QD=10.2;ReadPosRankSum=-1.031;SOR=0.76 GT:AD:DP:GQ:PL 0/1:434,350:784:99:8023,0,10160 9 43915434 . T C 1517.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0;DP=335;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=32.33;MQRankSum=-5.311;QD=4.53;ReadPosRankSum=1.7;SOR=0.643 GT:AD:DP:GQ:PL 0/1:237,98:335:99:1546,0,5487 9 43915463 . G T 1666.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.145;ClippingRankSum=0;DP=370;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=31.48;MQRankSum=-4.843;QD=4.5;ReadPosRankSum=1.071;SOR=0.712 GT:AD:DP:GQ:PL 0/1:259,111:370:99:1695,0,5889 9 43915544 . C T 2574.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DP=310;ExcessHet=3.0103;FS=10.272;MLEAC=1;MLEAF=0.5;MQ=31.41;MQRankSum=-4.829;QD=8.31;ReadPosRankSum=-1.669;SOR=1.25 GT:AD:DP:GQ:PGT:PID:PL 0/1:222,88:310:99:0|1:43915544_C_T:2603,0,10377 9 43915556 . G T 2215.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0;DP=261;ExcessHet=3.0103;FS=19.796;MLEAC=1;MLEAF=0.5;MQ=30.27;MQRankSum=-5.042;QD=8.49;ReadPosRankSum=-0.765;SOR=1.805 GT:AD:DP:GQ:PGT:PID:PL 0/1:196,65:261:99:0|1:43915544_C_T:2244,0,10026 9 43915557 . C T 2224.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.269;ClippingRankSum=0;DP=255;ExcessHet=3.0103;FS=17.084;MLEAC=1;MLEAF=0.5;MQ=29.97;MQRankSum=-5.603;QD=8.72;ReadPosRankSum=0.114;SOR=1.729 GT:AD:DP:GQ:PGT:PID:PL 0/1:195,60:255:99:0|1:43915544_C_T:2253,0,9947 9 67934804 rs201360092 T A 574.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.344;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.38;MQRankSum=-1.629;QD=11.27;ReadPosRankSum=0.699;SOR=0.223 GT:AD:DP:GQ:PL 0/1:25,26:51:99:603,0,580 9 67934841 . C CT 374.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=2.646;MLEAC=1;MLEAF=0.5;MQ=24.63;MQRankSum=-2.045;QD=6.14;ReadPosRankSum=-1.677;SOR=0.309 GT:AD:DP:GQ:PL 0/1:41,20:61:99:412,0,912 9 67965185 . G GT 358.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.635;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=10.455;MLEAC=1;MLEAF=0.5;MQ=37.69;MQRankSum=-6.245;QD=6.08;ReadPosRankSum=1.709;SOR=1.266 GT:AD:DP:GQ:PL 0/1:40,19:68:99:396,0,895 9 67968458 rs200972432 G A 858.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.854;ClippingRankSum=0;DB;DP=566;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.5;MQ=35.77;MQRankSum=-5.99;QD=1.52;ReadPosRankSum=4.801;SOR=0.42 GT:AD:DP:GQ:PL 0/1:467,99:566:99:887,0,15632 9 67968476 rs201373069 C T 5546.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.345;ClippingRankSum=0;DB;DP=482;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.5;MQ=34.44;MQRankSum=-0.492;QD=11.51;ReadPosRankSum=-1.488;SOR=0.836 GT:AD:DP:GQ:PL 0/1:235,247:482:99:5575,0,6732 9 67968756 rs200586073 G A 65.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.45;ClippingRankSum=-0;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.38;MQRankSum=1.282;QD=8.22;ReadPosRankSum=0.18;SOR=0.693 GT:AD:DP:GQ:PL 0/1:4,4:8:91:94,0,91 9 69200366 . G C 910.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.81;ClippingRankSum=0;DP=176;ExcessHet=3.0103;FS=121.191;MLEAC=1;MLEAF=0.5;MQ=30.94;MQRankSum=-9.895;QD=5.17;ReadPosRankSum=0.787;SOR=7.903 GT:AD:DP:GQ:PL 0/1:125,51:176:99:939,0,3874 9 69200516 rs200592617 C T 1814.77 SNP_MQ_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0;DB;DP=687;ExcessHet=3.0103;FS=5.132;MLEAC=1;MLEAF=0.5;MQ=35.5;MQRankSum=-17.792;QD=2.64;ReadPosRankSum=-3.623;SOR=0.771 GT:AD:DP:GQ:PL 0/1:534,153:687:99:1843,0,12792 9 69206924 rs80282443 T A 2087.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.834;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.5;MQ=32.76;MQRankSum=-2.087;QD=8.03;ReadPosRankSum=0.683;SOR=0.866 GT:AD:DP:GQ:PL 0/1:150,110:260:99:2116,0,3129 9 69235570 . T C 128.84 SNP_MQ_filter AC=2;AF=1;AN=2;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=22.91;QD=21.47;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,6:6:18:157,18,0 9 69256833 rs113407575 A G 6461.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=3.527;MLEAC=2;MLEAF=1;MQ=54.91;MQRankSum=-0.632;QD=27.85;ReadPosRankSum=-0.436;SOR=0.611 GT:AD:DP:GQ:PL 1/1:1,231:232:99:6490,655,0 9 69390020 rs200769647 T A 181.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.618;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.62;MQRankSum=0.899;QD=6.99;ReadPosRankSum=-1.564;SOR=0.269 GT:AD:DP:GQ:PL 0/1:17,9:26:99:210,0,432 9 69391085 rs199519329 G A 2000.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.577;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.12;MLEAC=1;MLEAF=0.5;MQ=28.08;MQRankSum=-6.924;QD=10.48;ReadPosRankSum=0.276;SOR=0.802 GT:AD:DP:GQ:PL 0/1:96,95:191:99:2029,0,2120 9 69416170 rs199732379 C G 708.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.24;QD=27.26;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,26:26:77:737,77,0 9 69421946 rs201965999 T C 507.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.997;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=30.94;MQRankSum=-0.994;QD=14.1;ReadPosRankSum=0.399;SOR=0.941 GT:AD:DP:GQ:PL 0/1:16,20:36:99:536,0,408 9 69421983 . G C 90.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.666;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23.65;MQRankSum=0.182;QD=5.34;ReadPosRankSum=1.427;SOR=0.293 GT:AD:DP:GQ:PL 0/1:11,6:17:99:119,0,261 9 69423641 rs201906409 T G 570.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.782;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=11.137;MLEAC=1;MLEAF=0.5;MQ=35.68;MQRankSum=-8.608;QD=1.47;ReadPosRankSum=4.811;SOR=0.321 GT:AD:DP:GQ:PL 0/1:316,71:387:99:599,0,7294 9 70176768 . AG A 1694.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.73;MQRankSum=2.747;QD=37.66;ReadPosRankSum=0.462;SOR=3.958 GT:AD:DP:GQ:PL 1/1:1,44:45:95:1732,95,0 9 70176851 . A G 382.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.128;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.08;MQRankSum=-8.068;QD=2.66;ReadPosRankSum=-2.48;SOR=0.259 GT:AD:DP:GQ:PL 0/1:114,30:144:99:411,0,2967 9 70177212 . A G 3946.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;BaseQRankSum=2.482;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=15.667;MLEAC=2;MLEAF=1;MQ=24.93;MQRankSum=-3.1;QD=26.85;ReadPosRankSum=-0.038;SOR=8.567 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3975,391,0 9 70177648 rs200610177 C G 1779.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.215;ClippingRankSum=0;DB;DP=730;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=31.44;MQRankSum=-2.794;QD=2.44;ReadPosRankSum=0.2;SOR=0.614 GT:AD:DP:GQ:PL 0/1:579,151:730:99:1808,0,22675 9 70177655 rs201783089 G C 11447.8 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.692;ClippingRankSum=0;DB;DP=803;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.5;MQ=32.16;MQRankSum=-2.621;QD=14.26;ReadPosRankSum=-1.78;SOR=0.849 GT:AD:DP:GQ:PL 0/1:386,417:803:99:11476,0,7766 9 70177822 rs199878768 T C 4173.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.292;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=8.543;MLEAC=2;MLEAF=1;MQ=26.61;MQRankSum=-1.859;QD=29.19;ReadPosRankSum=0.267;SOR=3.656 GT:AD:DP:GQ:PL 1/1:1,142:143:99:4202,393,0 9 70177977 . G T 67.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.248;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=56.042;MLEAC=1;MLEAF=0.5;MQ=42.49;MQRankSum=-6.385;QD=0.45;ReadPosRankSum=-2.078;SOR=5.993 GT:AD:DP:GQ:PL 0/1:132,19:151:96:96,0,3638 9 70863777 rs373301918 G T 138.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.55;QD=27.78;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,5:5:15:167,15,0 9 70881234 . TAA T 367.74 PASS AC=2;AF=1;AN=2;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=23;QD=40.86;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,9:9:27:405,27,0 9 70900911 rs200498038 G GA 215.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.284;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.87;MQRankSum=-0.691;QD=8.3;ReadPosRankSum=0.338;SOR=0.446 GT:AD:DP:GQ:PL 0/1:15,11:26:99:253,0,333 9 70918189 . A T 325.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.936;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=9.558;MLEAC=1;MLEAF=0.5;MQ=33.5;MQRankSum=-1.697;QD=15.51;ReadPosRankSum=0.097;SOR=0.027 GT:AD:DP:GQ:PL 0/1:8,13:21:99:354,0,227 9 70999315 rs17081271 T C 664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.534;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=-1.051;QD=10.55;ReadPosRankSum=1.182;SOR=0.682 GT:AD:DP:GQ:PL 0/1:34,29:63:99:693,0,822 9 71628207 rs3730386 G C 3052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.635;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.366;SOR=0.922 GT:AD:DP:GQ:PL 0/1:141,114:255:99:3081,0,3804 9 71628286 rs41288749 G A 3790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.065;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=4.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.373;SOR=0.933 GT:AD:DP:GQ:PL 0/1:147,154:301:99:3819,0,3594 9 71650752 rs2481598 A G 3290.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3319,333,0 9 71831398 rs2498417 T C 5210.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.083 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5239,518,0 9 71833230 rs72709079 G A 1238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-0.661;SOR=0.685 GT:AD:DP:GQ:PL 0/1:63,56:119:99:1267,0,1432 9 71843023 rs2309428 C A 4434.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.943;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.99;ReadPosRankSum=-0.59;SOR=0.234 GT:AD:DP:GQ:PL 1/1:1,152:153:99:4463,447,0 9 71865932 rs2282335 G A 675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.428;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=7.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-0.351;SOR=1.751 GT:AD:DP:GQ:PL 0/1:36,26:62:99:704,0,1014 9 71865988 rs41277907 C T 1401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=11.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=1.563;SOR=1.688 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1430,0,1739 9 71990645 rs4351475 C T 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.571;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=2.155;SOR=0.95 GT:AD:DP:GQ:PL 0/1:39,33:72:99:827,0,897 9 72472831 rs10780682 C T 1326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=1.342;SOR=0.423 GT:AD:DP:GQ:PL 0/1:31,57:88:99:1355,0,737 9 72741247 rs2296772 C T 2669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.801;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=1.122;SOR=0.752 GT:AD:DP:GQ:PL 0/1:126,108:234:99:2698,0,3167 9 72741298 rs2296773 G A 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.239;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=2.361;SOR=0.886 GT:AD:DP:GQ:PL 0/1:83,80:163:99:2123,0,2052 9 72741312 rs1998972 G A 4557.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4586,426,0 9 72755128 rs61609258 TAAA T 3173.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.889;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.76;QD=18.78;ReadPosRankSum=1.453;SOR=0.767 GT:AD:DP:GQ:PL 0/1:85,84:169:99:3211,0,4360 9 72758742 rs12683706 C T 1401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=1.362;SOR=0.639 GT:AD:DP:GQ:PL 0/1:69,62:131:99:1430,0,1832 9 72783608 rs10780871 T C 2439.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2468,249,0 9 72840757 rs182198844 T C 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.321;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.5;MQ=58.28;MQRankSum=2.67;QD=9.37;ReadPosRankSum=0.231;SOR=0.569 GT:AD:DP:GQ:PL 0/1:54,37:91:99:881,0,1247 9 72897434 rs1180116 G A 4790.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.85;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,130:130:99:1|1:72897434_G_A:4819,390,0 9 72897440 rs1180117 T C 1663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-2.245;SOR=0.672 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,71:133:99:0|1:72897434_G_A:1692,0,1462 9 72901096 rs1180123 T C 894.77 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.214 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,31:31:93:1|1:72901094_T_A:923,93,0 9 72929769 rs11142363 C T 630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.972;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=-0.731;SOR=0.765 GT:AD:DP:GQ:PL 0/1:20,27:47:99:659,0,404 9 73150984 rs6560142 C T 6986.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7015,702,0 9 73151715 rs7033976 C T 7563.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7592,753,0 9 73151970 rs3739776 C T 5677.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5706,528,0 9 73458045 rs3833697 T TA 2218.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;MQRankSum=0.337;QD=23.11;ReadPosRankSum=1.376;SOR=0.551 GT:AD:DP:GQ:PL 1/1:9,87:107:71:2256,71,0 9 73461337 rs7862440 T A 4676.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4705,468,0 9 73479441 rs72324326 C CAAAA 516.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.238;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.47;ReadPosRankSum=-0.753;SOR=0.706 GT:AD:DP:GQ:PL 0/1:10,13:37:99:554,0,581 9 74300311 rs72019397 T TAA 471.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.81;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.883;SOR=0.628 GT:AD:DP:GQ:PL 0/1:17,20:80:99:509,0,878 9 74300640 rs2310021 A G 565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.804;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=-1.964;SOR=0.997 GT:AD:DP:GQ:PL 0/1:44,25:69:99:594,0,1071 9 74349917 rs71353514 CAA C 3740.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=0.413;QD=33.4;ReadPosRankSum=-1.49;SOR=0.825 GT:AD:DP:GQ:PL 1/1:3,109:144:99:3745,242,0 9 74671719 rs13295099 T C 1056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=-0.885;QD=8.52;ReadPosRankSum=-0.368;SOR=0.679 GT:AD:DP:GQ:PL 0/1:72,52:124:99:1085,0,1772 9 74825707 rs11143170 T C 655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=-0.014;SOR=0.763 GT:AD:DP:GQ:PL 0/1:18,29:47:99:684,0,390 9 74838023 rs34979271 T C 485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-0.012;SOR=0.716 GT:AD:DP:GQ:PL 0/1:26,24:50:99:514,0,598 9 74975136 rs2809270 T C 3565.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=29.23;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3594,365,0 9 74975711 rs1853276 T C 4055.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4084,411,0 9 75303653 rs2589615 C T 2296.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2325,240,0 9 75315438 rs1796993 G A 474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.496;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.42;ReadPosRankSum=-0.269;SOR=1.329 GT:AD:DP:GQ:PL 0/1:42,22:64:99:503,0,1058 9 75431076 rs34532421 C T 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=1.426;SOR=0.869 GT:AD:DP:GQ:PL 0/1:47,42:89:99:921,0,1183 9 75783937 rs3739959 A G 3560.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.37;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3589,330,0 9 77376633 rs2274925 A G 873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.055;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.537;SOR=1.002 GT:AD:DP:GQ:PL 0/1:38,35:73:99:902,0,810 9 77376647 rs2274924 T C 941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.535;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.868;SOR=0.931 GT:AD:DP:GQ:PL 0/1:44,38:82:99:970,0,956 9 77407636 rs4145894 C T 1385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.545;SOR=0.498 GT:AD:DP:GQ:PL 0/1:70,64:134:99:1414,0,1844 9 77436641 rs7018994 G A 2369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=1.657;SOR=0.729 GT:AD:DP:GQ:PL 0/1:110,112:222:99:2398,0,2593 9 77502160 rs1333342 G A 1540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-3.012;SOR=0.799 GT:AD:DP:GQ:PL 0/1:59,65:124:99:1569,0,1476 9 77563087 rs2769058 C T 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.096;QD=10.84;ReadPosRankSum=1.036;SOR=1.148 GT:AD:DP:GQ:PL 0/1:40,35:75:99:841,0,1013 9 77684690 rs3752955 A C 1383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.305;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=0.985;SOR=0.822 GT:AD:DP:GQ:PL 0/1:49,53:102:99:1412,0,1319 9 77752510 rs2273769 C T 637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.829;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=5.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-1.058;SOR=1.252 GT:AD:DP:GQ:PL 0/1:38,27:65:99:666,0,949 9 78796522 rs2270570 A G 782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.004;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.695;SOR=1.222 GT:AD:DP:GQ:PL 0/1:31,29:60:99:811,0,762 9 78936358 rs1110222 G A 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-0.713;SOR=0.481 GT:AD:DP:GQ:PL 0/1:32,33:65:99:843,0,858 9 78936492 rs1110223 A G 1372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.743;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.433;SOR=0.732 GT:AD:DP:GQ:PL 0/1:65,60:125:99:1401,0,1483 9 78937974 rs3001772 C T 258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.39;ReadPosRankSum=-0.819;SOR=0.698 GT:AD:DP:GQ:PL 0/1:44,15:59:99:287,0,1227 9 78938043 rs2495207 G A 695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.76;ReadPosRankSum=-0.076;SOR=0.825 GT:AD:DP:GQ:PL 0/1:67,36:103:99:724,0,1731 9 78938186 rs2803429 G C 633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.384;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=-0.534;SOR=0.728 GT:AD:DP:GQ:PL 0/1:47,28:75:99:662,0,1239 9 78942956 rs2259969 A G 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.655;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.212;SOR=1.063 GT:AD:DP:GQ:PL 0/1:44,51:95:99:1252,0,991 9 78969059 rs7036921 C A 1590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=0.165;SOR=0.566 GT:AD:DP:GQ:PL 0/1:106,80:186:99:1619,0,2494 9 79003516 rs10781358 C G 1075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.74;ReadPosRankSum=-0.153;SOR=0.735 GT:AD:DP:GQ:PL 0/1:30,43:73:99:1104,0,723 9 79009106 rs2490582 A C 4460.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4489,417,0 9 79244208 rs370679936 TA T 45.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.48;ReadPosRankSum=2.154;SOR=0.381 GT:AD:DP:GQ:PL 0/1:24,7:38:83:83,0,553 9 79318375 rs11267615 GGTGACAGCCTGCAAC G 2224.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.772;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.03;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=2.165;QD=14.17;ReadPosRankSum=0.929;SOR=0.541 GT:AD:DP:GQ:PL 0/1:95,62:157:99:2262,0,4883 9 79318471 rs560094 C T 2345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.517;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.474;QD=11.56;ReadPosRankSum=0.557;SOR=0.577 GT:AD:DP:GQ:PL 0/1:105,98:203:99:2374,0,2502 9 79318677 rs561970 T C 2236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.78;SOR=0.804 GT:AD:DP:GQ:PL 0/1:108,88:196:99:2265,0,2848 9 79318921 rs620985 A G 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.944;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-1.299;SOR=0.636 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1559,0,1532 9 79318998 rs620552 A G 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.779;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.368;QD=12.75;ReadPosRankSum=1.378;SOR=0.392 GT:AD:DP:GQ:PL 0/1:49,54:103:99:1341,0,1191 9 79320640 rs512110 C T 1702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.785;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=1.039;SOR=0.957 GT:AD:DP:GQ:PL 0/1:76,66:142:99:1731,0,1838 9 79321276 rs517634 T C 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.475;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-1.016;SOR=0.51 GT:AD:DP:GQ:PL 0/1:67,54:121:99:1525,0,1756 9 79321871 rs577993 C T 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.947;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=1.116;SOR=1.058 GT:AD:DP:GQ:PL 0/1:65,43:108:99:1133,0,1602 9 79322068 rs683866 G T 1263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-2.18;SOR=0.765 GT:AD:DP:GQ:PL 0/1:62,56:118:99:1292,0,1677 9 79322674 rs680775 A G 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.099;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=3.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=1.123;SOR=0.963 GT:AD:DP:GQ:PL 0/1:77,53:130:99:1286,0,1946 9 79322720 rs680729 A G 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.716;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=9.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.358;SOR=1.033 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1689,0,1946 9 79324135 rs2307907 A ATGACTGTTGCAG 2248.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.022;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.2;QD=16.41;ReadPosRankSum=1.767;SOR=0.838 GT:AD:DP:GQ:PL 0/1:80,57:137:99:2286,0,3134 9 79324179 rs530978 G A 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.181;QD=10.37;ReadPosRankSum=-0.212;SOR=0.955 GT:AD:DP:GQ:PL 0/1:97,71:168:99:1771,0,2426 9 79324741 rs557352 T C 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.005;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=4.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.629;SOR=1.079 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1838,0,2027 9 79325558 rs600859 G C 2241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=-0.086;SOR=0.912 GT:AD:DP:GQ:PL 0/1:65,85:150:99:2270,0,1774 9 79325615 rs611461 A G 2616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=3.404;SOR=0.688 GT:AD:DP:GQ:PL 0/1:82,106:188:99:2645,0,1941 9 79922845 rs3216012 C CT 1053.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.51;ReadPosRankSum=-1.1;SOR=0.49 GT:AD:DP:GQ:PL 1/1:2,41:44:82:1091,82,0 9 79986057 rs3737289 A G 5457.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5486,518,0 9 80343587 rs5898555 G GA 407.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.046;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=1.056;QD=10.73;ReadPosRankSum=-0.431;SOR=0.762 GT:AD:DP:GQ:PL 0/1:17,21:50:99:445,0,296 9 80851350 rs10867166 G C 1837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-2.099;SOR=0.589 GT:AD:DP:GQ:PL 0/1:72,72:144:99:1866,0,1936 9 80851527 rs13292584 G A 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.994;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.035;SOR=0.693 GT:AD:DP:GQ:PL 0/1:63,73:136:99:1771,0,1740 9 80881357 rs146563928 G C 1396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=-0.933;SOR=0.756 GT:AD:DP:GQ:PL 0/1:39,58:97:99:1425,0,886 9 80912115 rs2277148 G C 4459.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=1.065 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4488,465,0 9 80919756 rs3739474 T G 6230.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6259,659,0 9 80932574 rs3780194 T A 2445.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=1.429 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2474,278,0 9 82187750 rs1934610 A G 4268.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4297,447,0 9 82323665 rs117550856 C T 2557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.55;SOR=0.757 GT:AD:DP:GQ:PL 0/1:135,112:247:99:2586,0,3238 9 84205860 rs8782 G A 4929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0;DB;DP=447;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0;QD=11.08;ReadPosRankSum=1.429;SOR=0.681 GT:AD:DP:GQ:PL 0/1:234,211:445:99:4958,0,5660 9 84267147 rs2228173 T C 4749.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=29.69;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4778,480,0 9 84607758 rs10867826 T A 4128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=0.399;MLEAC=1;MLEAF=0.5;MQ=59.07;MQRankSum=-4.385;QD=12.51;ReadPosRankSum=0.595;SOR=0.65 GT:AD:DP:GQ:PL 0/1:168,162:330:99:4157,0,4390 9 85613354 rs34303676 A G 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.933;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.37;SOR=0.836 GT:AD:DP:GQ:PL 0/1:34,49:83:99:1159,0,683 9 85677562 rs140897785 G A 2644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.645;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-1.119;SOR=0.576 GT:AD:DP:GQ:PL 0/1:156,111:267:99:2673,0,4324 9 85863091 rs10114696 A G 2924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.229;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-0.702;SOR=0.672 GT:AD:DP:GQ:PL 0/1:116,118:234:99:2953,0,2761 9 85926893 rs200178795 GA G 102.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.177;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.427;QD=1.47;ReadPosRankSum=-1.547;SOR=0.416 GT:AD:DP:GQ:PL 0/1:55,15:83:99:140,0,1297 9 85987879 rs57558822 GA G 804.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=5.842;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.809;QD=10.59;ReadPosRankSum=0.733;SOR=0.296 GT:AD:DP:GQ:PL 0/1:32,44:84:99:842,0,666 9 86153159 rs4529536 T G 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.366;SOR=0.697 GT:AD:DP:GQ:PL 0/1:63,66:129:99:1571,0,1671 9 86238086 rs2811903 T C 4046.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.86;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4075,381,0 9 86278773 rs9314722 T C 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.986;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.46;ReadPosRankSum=0.435;SOR=0.815 GT:AD:DP:GQ:PL 0/1:85,48:133:99:1021,0,2015 9 86284178 rs1044175 C A 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.943;SOR=0.626 GT:AD:DP:GQ:PL 0/1:81,76:157:99:1796,0,1915 9 86354663 . TA T 164.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.23;ReadPosRankSum=-0.245;SOR=0.679 GT:AD:DP:GQ:PL 0/1:37,14:64:99:202,0,780 9 86468715 rs295274 A T 2727.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.66;QD=29.02;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2756,282,0 9 86474115 rs55654273 T C 1253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.601;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-0.055;QD=12.06;ReadPosRankSum=0.354;SOR=0.892 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1282,0,1314 9 86504005 rs13289566 C T 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.211;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=7.361;MLEAC=1;MLEAF=0.5;MQ=57.13;MQRankSum=0.449;QD=16.12;ReadPosRankSum=0.434;SOR=1.739 GT:AD:DP:GQ:PL 0/1:29,38:67:99:1108,0,689 9 86518796 rs12001918 T C 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.129;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=0.961;SOR=0.599 GT:AD:DP:GQ:PL 0/1:84,64:148:99:1474,0,1958 9 86617265 rs1982151 A G 1088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.403;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.12;ReadPosRankSum=0.45;SOR=0.756 GT:AD:DP:GQ:PL 0/1:39,33:72:99:1117,0,952 9 86900926 rs7853758 G A 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.814;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=1.274;SOR=0.621 GT:AD:DP:GQ:PL 0/1:118,86:204:99:1856,0,2764 9 88275838 rs606606 T A 536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.702;SOR=0.829 GT:AD:DP:GQ:PL 0/1:20,24:44:99:565,0,393 9 88356743 rs10114347 A G 3636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.24;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=9.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=1.113;SOR=0.446 GT:AD:DP:GQ:PL 0/1:159,152:311:99:3665,0,4318 9 88937851 rs58050565 ATTT A 2251.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=2.351;QD=17.59;ReadPosRankSum=0.873;SOR=0.534 GT:AD:DP:GQ:PL 0/1:66,62:128:99:2289,0,2875 9 88959938 rs791323 C T 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=-1.085;SOR=0.795 GT:AD:DP:GQ:PL 0/1:78,56:134:99:1332,0,2084 9 90265015 rs3818584 C T 2088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=3.124;SOR=0.641 GT:AD:DP:GQ:PL 0/1:88,90:178:99:2117,0,2132 9 90313717 rs3128495 G T 1383.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1412,141,0 9 90321583 rs3118863 C T 2884.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2913,291,0 9 90322023 rs1056719 G A 3986.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4015,375,0 9 90586043 rs622418 G A 1684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.177;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-0.372;SOR=0.507 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1713,0,1557 9 90588903 rs665983 C T 5500.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5529,545,0 9 91656963 rs3750399 T C 3205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=1.128;SOR=0.566 GT:AD:DP:GQ:PL 0/1:133,134:267:99:3234,0,3237 9 91934555 rs41306445 A G 3582.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3611,354,0 9 93639846 rs290223 C G 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.18;SOR=0.578 GT:AD:DP:GQ:PL 0/1:58,62:120:99:1637,0,1793 9 94485928 rs2230578 C T 7052.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.1 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7081,725,0 9 94486321 rs10761129 C T 10752.8 PASS AC=2;AF=1;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,370:370:99:10781,1104,0 9 94486688 rs10992063 G A 7404.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7433,705,0 9 94495608 rs10820900 T C 4936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.409;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=-1.451;SOR=0.76 GT:AD:DP:GQ:PL 0/1:148,192:340:99:4965,0,3410 9 94985637 rs556155 T C 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.008;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-0.287;SOR=0.908 GT:AD:DP:GQ:PL 0/1:47,55:102:99:1383,0,1038 9 95004421 rs41280213 G C 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.404;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.52;SOR=1.038 GT:AD:DP:GQ:PL 0/1:36,33:69:99:901,0,909 9 95068046 rs1133908 C T 878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-1.609;SOR=0.579 GT:AD:DP:GQ:PL 0/1:39,43:82:99:907,0,882 9 95219597 rs4744132 G A 3137.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3166,309,0 9 95237024 rs111419727 C CTCA 3922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.101;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.71;QD=15.95;ReadPosRankSum=-0.805;SOR=0.652 GT:AD:DP:GQ:PL 0/1:129,117:263:99:3951,0,4594 9 95274338 rs2296667 A G 1270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=1.25;SOR=0.887 GT:AD:DP:GQ:PL 0/1:57,58:115:99:1299,0,1278 9 95279985 rs968040 C A 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.328;SOR=0.535 GT:AD:DP:GQ:PL 0/1:115,106:221:99:2505,0,2875 9 95284873 rs9299405 A G 2368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.929;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=0.476;SOR=0.948 GT:AD:DP:GQ:PL 0/1:73,82:155:99:2397,0,1753 9 95284982 rs10120210 T G 3171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.455;SOR=0.669 GT:AD:DP:GQ:PL 0/1:111,136:247:99:3200,0,2613 9 95420983 rs10992393 A G 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.864;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.127;SOR=0.501 GT:AD:DP:GQ:PL 0/1:53,47:100:99:1056,0,1177 9 95608658 rs144795971 T C 2233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.945;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.245;SOR=0.605 GT:AD:DP:GQ:PL 0/1:98,89:187:99:2262,0,2357 9 95618605 rs56121719 T TA 700.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.75;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=5.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-0.1;SOR=1.322 GT:AD:DP:GQ:PL 0/1:37,34:78:99:738,0,596 9 95738781 rs3802381 C A 8299.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8328,786,0 9 95780465 rs7048975 A G 3465.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3494,368,0 9 95887320 rs2275848 G T 4565.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4594,431,0 9 95993215 rs34976687 C T 2610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.428;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=1.369;SOR=0.69 GT:AD:DP:GQ:PL 0/1:99,116:215:99:2639,0,2579 9 96000622 rs1539670 C T 2571.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.07;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2600,283,0 9 96015256 rs4744201 C T 3781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-1.358;SOR=0.661 GT:AD:DP:GQ:PL 0/1:185,168:353:99:3810,0,4395 9 96015377 rs4744202 A G 7618.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=1.374 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7647,744,0 9 96021312 rs10761203 G A 3650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.975;SOR=0.71 GT:AD:DP:GQ:PL 0/1:152,168:320:99:3679,0,3403 9 96051521 rs2169756 A G 14174.8 PASS AC=2;AF=1;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=0.893 GT:AD:DP:GQ:PL 1/1:0,436:436:99:14203,1309,0 9 96052295 rs4744216 C G 1071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=-0.102;SOR=0.693 GT:AD:DP:GQ:PL 0/1:68,52:120:99:1100,0,1502 9 96055063 rs41278286 C T 3963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=3.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.115;SOR=0.547 GT:AD:DP:GQ:PL 0/1:185,176:361:99:3992,0,4482 9 96097662 rs4744219 G A 2961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.747;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.5;MQ=44.83;MQRankSum=-2.184;QD=11.85;ReadPosRankSum=-0.147;SOR=0.607 GT:AD:DP:GQ:PL 0/1:130,120:250:99:2990,0,3262 9 96097747 rs78436873 C T 10959.8 PASS AC=2;AF=1;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.29;QD=27.82;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,394:394:99:10988,1180,0 9 96097916 rs199652907 G A 828.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.432;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=28.22;MQRankSum=0.69;QD=13.16;ReadPosRankSum=0.609;SOR=0.793 GT:AD:DP:GQ:PL 0/1:30,33:63:99:857,0,752 9 96209943 rs10821128 T C 862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.877;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-0.911;QD=11.2;ReadPosRankSum=-2.08;SOR=0.906 GT:AD:DP:GQ:PL 0/1:41,36:77:99:891,0,989 9 96214928 rs1055710 G A 3197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-1.87;SOR=0.765 GT:AD:DP:GQ:PL 0/1:136,130:266:99:3226,0,3615 9 96238578 rs10821135 C T 526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=-0.938;SOR=0.627 GT:AD:DP:GQ:PL 0/1:32,26:58:99:555,0,804 9 96717287 rs191789925 C T 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.29;SOR=0.622 GT:AD:DP:GQ:PL 0/1:79,78:157:99:1763,0,1954 9 96827123 rs10993039 C G 932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.66;ReadPosRankSum=2.681;SOR=0.286 GT:AD:DP:GQ:PL 0/1:15,35:50:99:961,0,386 9 96860655 rs142546153 C T 2758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=3.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.75;ReadPosRankSum=1.104;SOR=0.947 GT:AD:DP:GQ:PL 0/1:80,107:187:99:2787,0,1949 9 97080827 rs202219124 C G 1135.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.923;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27.15;MQRankSum=0.93;QD=14.2;ReadPosRankSum=0.541;SOR=0.908 GT:AD:DP:GQ:PL 0/1:36,44:80:99:1164,0,901 9 97080944 rs150455117 GAGA G 5210.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.89;MQRankSum=-0.653;QD=20.68;ReadPosRankSum=-0.822;SOR=0.691 GT:AD:DP:GQ:PL 0/1:117,135:252:99:5248,0,5695 9 97221434 rs9409765 G A 1283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.56;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.274;SOR=0.675 GT:AD:DP:GQ:PL 0/1:50,52:102:99:1312,0,1220 9 97349666 rs573212 C G 4090.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4119,408,0 9 97365720 rs1769257 T C 2861.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.89;SOR=1.153 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2890,261,0 9 97369083 rs2297084 G A 4496.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4525,471,0 9 97369149 rs1769259 C T 4489.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4518,429,0 9 98209594 rs357564 G A 4714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=0.085;SOR=0.542 GT:AD:DP:GQ:PL 0/1:158,181:339:99:4743,0,4037 9 98229389 rs2066829 C G 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=1.296;SOR=0.598 GT:AD:DP:GQ:PL 0/1:96,93:189:99:2078,0,2203 9 98238358 rs2066836 G A 2547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.379;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.359;SOR=0.752 GT:AD:DP:GQ:PL 0/1:148,117:265:99:2576,0,3436 9 98270646 rs71366293 T TGCC 5204.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.917;QD=20.74;ReadPosRankSum=1.176;SOR=0.566 GT:AD:DP:GQ:PL 0/1:115,136:254:99:5242,0,4469 9 98638306 rs56108623 C T 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.279;SOR=0.757 GT:AD:DP:GQ:PL 0/1:53,60:113:99:1463,0,1311 9 98734670 rs3088294 C T 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.529;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=5.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.174;SOR=0.902 GT:AD:DP:GQ:PL 0/1:64,60:124:99:1559,0,1599 9 98734844 rs41281212 A G 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.19;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=1.938;SOR=0.701 GT:AD:DP:GQ:PL 0/1:69,53:122:99:1504,0,1614 9 98775459 rs10512243 G A 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.552;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=1.088;SOR=0.816 GT:AD:DP:GQ:PL 0/1:63,65:128:99:1519,0,1348 9 100071728 rs3747507 G A 2382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.358;SOR=0.809 GT:AD:DP:GQ:PL 0/1:91,104:195:99:2411,0,2206 9 100074446 rs3747504 C T 1053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=-1.231;SOR=0.481 GT:AD:DP:GQ:PL 0/1:70,49:119:99:1082,0,1733 9 100087345 rs3747496 A G 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.158;SOR=0.593 GT:AD:DP:GQ:PL 0/1:64,67:131:99:1677,0,1494 9 100092968 rs113264216 A AGAGGAG 2297.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=3.289;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.289;QD=12.22;ReadPosRankSum=0.323;SOR=0.93 GT:AD:DP:GQ:PL 0/1:96,92:190:99:2335,0,6604 9 100105735 rs1947717 T C 1426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.744;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.811;SOR=0.709 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1455,0,1165 9 100116833 rs10125198 G C 565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.96;ReadPosRankSum=-0.232;SOR=0.903 GT:AD:DP:GQ:PL 0/1:64,31:95:99:594,0,1606 9 100122291 rs3747495 T C 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=-0.407;SOR=0.77 GT:AD:DP:GQ:PL 0/1:57,72:129:99:1707,0,1288 9 100132194 rs2169456 C A 1385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=3.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.978;SOR=1.009 GT:AD:DP:GQ:PL 0/1:76,63:139:99:1414,0,1920 9 100139161 rs11581 A G 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.197;SOR=0.695 GT:AD:DP:GQ:PL 0/1:64,57:121:99:1451,0,1739 9 100139182 rs898869 C T 1333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.125;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.651;SOR=0.737 GT:AD:DP:GQ:PL 0/1:60,54:114:99:1362,0,1608 9 100190780 rs1381532 A G 5270.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=1.207 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5299,495,0 9 100194406 rs2045732 T C 3941.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3970,410,0 9 100194534 rs13290426 G A 506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.56;ReadPosRankSum=0.949;SOR=0.602 GT:AD:DP:GQ:PL 0/1:43,24:67:99:535,0,1098 9 100388197 rs2773347 C T 5021.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5050,506,0 9 100459578 rs1800975 T C 6557.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=1.753 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6586,615,0 9 100616583 rs3021523 T C 5927.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5956,558,0 9 100616700 rs71369530 AGCCGCC A 7402.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.709;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.85;MQRankSum=0.332;QD=43.55;ReadPosRankSum=0.754;SOR=0.51 GT:AD:DP:GQ:PL 1/1:1,169:170:99:7440,504,0 9 100617021 rs3021526 C T 6372.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6401,641,0 9 100672338 rs2282192 C T 5213.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5242,503,0 9 100745902 rs3739672 A G 4289.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4318,414,0 9 100819192 rs3739670 C T 8620.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8649,879,0 9 100823084 rs13049 T C 4549.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.209 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4578,450,0 9 100971348 rs3739666 T C 2952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.478;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=9.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.113;SOR=1.189 GT:AD:DP:GQ:PL 0/1:145,128:273:99:2981,0,3431 9 100991430 rs1573025 C A 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=1.743;SOR=0.745 GT:AD:DP:GQ:PL 0/1:61,73:134:99:1837,0,1549 9 100995721 rs879369 A G 3905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=0.417;SOR=0.606 GT:AD:DP:GQ:PL 0/1:134,161:295:99:3934,0,2984 9 100995758 rs879368 G T 3295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.826;SOR=0.743 GT:AD:DP:GQ:PL 0/1:133,145:278:99:3324,0,3148 9 101056122 rs10985765 T C 913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.216;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.312;SOR=0.532 GT:AD:DP:GQ:PL 0/1:43,41:84:99:942,0,982 9 101061639 rs970388 C G 766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.055;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=-0.596;SOR=1.085 GT:AD:DP:GQ:PL 0/1:54,32:86:99:795,0,1426 9 101068580 rs2304389 G A 1562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.588;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.621;SOR=0.644 GT:AD:DP:GQ:PL 0/1:85,70:155:99:1591,0,1976 9 101533220 rs6415847 C T 8604.77 PASS AC=2;AF=1;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,305:305:99:8633,909,0 9 101558609 rs138948716 G A 2238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.49;ReadPosRankSum=0.182;SOR=0.913 GT:AD:DP:GQ:PL 0/1:41,87:128:99:2267,0,892 9 101611335 rs2273846 G C 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-0.929;SOR=0.776 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1473,0,1654 9 101778346 rs35529307 C G 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.72;ReadPosRankSum=-0.531;SOR=0.637 GT:AD:DP:GQ:PL 0/1:164,102:266:99:2081,0,4084 9 101796868 . TAAAA T 380.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=4.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.23;ReadPosRankSum=1.479;SOR=0.239 GT:AD:DP:GQ:PL 0/1:13,12:45:99:418,0,775 9 102591042 rs12344570 A G 2971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.385;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.067;SOR=0.946 GT:AD:DP:GQ:PL 0/1:130,117:247:99:3000,0,3443 9 102595685 rs10988904 C T 2041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.68;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=5.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.113;SOR=1.086 GT:AD:DP:GQ:PL 0/1:85,85:170:99:2070,0,2181 9 102691042 rs145402404 CTTCT C 1170.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=2.256;QD=15.61;ReadPosRankSum=-1.45;SOR=0.935 GT:AD:DP:GQ:PL 0/1:41,34:75:99:1208,0,2224 9 102713580 rs1997368 G A 3060.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3089,318,0 9 102730697 rs368650655 AT A 53.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.206;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.41;ReadPosRankSum=0.832;SOR=0.832 GT:AD:DP:GQ:PL 0/1:111,20:161:91:91,0,2624 9 103015184 rs2245216 T C 845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.035;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=1.567;SOR=0.687 GT:AD:DP:GQ:PL 0/1:39,33:72:99:874,0,908 9 103054951 rs2787374 T C 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.09;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.41;SOR=0.686 GT:AD:DP:GQ:PL 0/1:111,86:197:99:2218,0,2776 9 103064530 rs7472 G A 1227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.594;SOR=0.767 GT:AD:DP:GQ:PL 0/1:52,54:106:99:1256,0,1292 9 104133628 rs1572983 C T 5872.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5901,580,0 9 104170350 rs1047968 A G 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.356;SOR=0.75 GT:AD:DP:GQ:PL 0/1:79,73:152:99:1909,0,2031 9 104171523 rs45455902 A G 2910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.433;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.223;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=1.506;SOR=0.538 GT:AD:DP:GQ:PL 0/1:128,108:236:99:2939,0,3209 9 104171856 rs17772514 C T 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=-1.545;SOR=0.687 GT:AD:DP:GQ:PL 0/1:89,113:202:99:2908,0,2197 9 104238730 rs17187712 T A 2680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-1.137;SOR=0.855 GT:AD:DP:GQ:PL 0/1:103,116:219:99:2709,0,2407 9 104309445 rs2273976 T C 1174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.621;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-1.282;SOR=0.994 GT:AD:DP:GQ:PL 0/1:59,50:111:99:1203,0,1340 9 104335682 rs3739722 C T 1834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=8.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=1.11;SOR=0.522 GT:AD:DP:GQ:PL 0/1:96,82:178:99:1863,0,2322 9 104385712 rs10989564 A G 2340.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.22;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2369,257,0 9 104432873 rs942142 T G 1878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.035;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.988;SOR=0.692 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1907,0,1773 9 104433034 rs10512285 A G 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.268;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-2.427;SOR=0.586 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1687,0,1890 9 104433235 rs10989589 C T 1865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=5.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.851;SOR=1.069 GT:AD:DP:GQ:PL 0/1:95,80:175:99:1894,0,2450 9 104433347 rs13284303 G A 823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.653;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.56;ReadPosRankSum=1.393;SOR=0.467 GT:AD:DP:GQ:PL 0/1:67,42:109:99:852,0,1904 9 104449294 rs33945236 G A 1634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=1.083;SOR=0.713 GT:AD:DP:GQ:PL 0/1:82,72:154:99:1663,0,2121 9 104499575 rs1337677 T C 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.541;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=0.902;SOR=0.932 GT:AD:DP:GQ:PL 0/1:64,62:126:99:1601,0,1404 9 105763912 rs10820335 T C 271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=2.307;SOR=0.473 GT:AD:DP:GQ:PL 0/1:14,14:28:99:300,0,337 9 107266596 rs7049042 T C 2442.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2471,231,0 9 107266774 rs1949755 C G 4053.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,126:126:99:4082,378,0 9 107266844 rs1403812 A G 4410.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4439,429,0 9 107266943 rs1403811 G A 4531.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4560,472,0 9 107267304 rs7030820 C T 3790.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3819,387,0 9 107510145 rs3753024 G C 3356.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3385,339,0 9 107515214 rs2274870 G A 3261.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3290,335,0 9 107556793 rs34484490 T TAAA 1011.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.756;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=42.16;ReadPosRankSum=1.658;SOR=0.538 GT:AD:DP:GQ:PL 0/1:4,20:45:58:994,0,58 9 107562804 rs2230808 T C 2409.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2438,246,0 9 107665978 rs1800978 C G 1273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.552;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.062;QD=11.08;ReadPosRankSum=-0.121;SOR=0.627 GT:AD:DP:GQ:PL 0/1:60,55:115:99:1302,0,1402 9 108152199 rs2771040 G A 4372.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4401,423,0 9 108223786 rs10991661 A G 500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.61;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=0.034;SOR=0.999 GT:AD:DP:GQ:PL 0/1:31,23:54:99:529,0,660 9 108366734 rs34787999 G A 1514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=1.591;SOR=0.794 GT:AD:DP:GQ:PL 0/1:63,69:132:99:1543,0,1549 9 108380355 rs17309806 C A 592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=-0.147;SOR=0.522 GT:AD:DP:GQ:PL 0/1:37,27:64:99:621,0,948 9 109689485 . T TGGCCCCCCCCC 390.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=150.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.95;ReadPosRankSum=-2.054;SOR=5.416 GT:AD:DP:GQ:PL 0/1:94,5:108:99:428,0,6462 9 109689490 . A C 57.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=108.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.55;ReadPosRankSum=-3.402;SOR=3.081 GT:AD:DP:GQ:PL 0/1:92,13:107:86:86,0,6734 9 109689499 . A C 33.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.06;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=81.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.28;ReadPosRankSum=-3.176;SOR=4.97 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,11:119:62:0|1:109689499_A_C:62,0,7002 9 110081018 rs1805335 A G 3956.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.389 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3985,395,0 9 111625913 rs4978370 A G 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.627;SOR=0.507 GT:AD:DP:GQ:PL 0/1:112,104:216:99:2359,0,2699 9 111653574 rs1063110 C G 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=0.611;SOR=0.561 GT:AD:DP:GQ:PL 0/1:65,87:152:99:2369,0,1685 9 111679964 rs56125645 C CA 1272.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.035;QD=14.97;ReadPosRankSum=-1.082;SOR=0.848 GT:AD:DP:GQ:PL 0/1:43,42:85:99:1310,0,1355 9 111746607 rs838838 T C 585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.013;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-1.081;SOR=0.826 GT:AD:DP:GQ:PL 0/1:22,24:46:99:614,0,485 9 111929420 rs10979723 C G 6648.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.33;SOR=0.72 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,150:150:99:1|1:111929420_C_G:6677,451,0 9 111929421 rs10979724 G C 6648.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.23;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,147:147:99:1|1:111929420_C_G:6677,451,0 9 111945049 rs3750450 T G 2480.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2509,240,0 9 111956599 rs3750447 G A 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.209;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0;QD=9.04;ReadPosRankSum=0.614;SOR=0.854 GT:AD:DP:GQ:PL 0/1:125,83:208:99:1909,0,2975 9 112082510 rs117569740 C T 1569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.017;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=8.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-0.059;SOR=0.32 GT:AD:DP:GQ:PL 0/1:75,81:156:99:1598,0,1700 9 112199146 rs4978809 A G 1081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.809;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.457;SOR=0.675 GT:AD:DP:GQ:PL 0/1:34,47:81:99:1110,0,690 9 112629858 rs2769154 A G 5549.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5578,572,0 9 112811038 rs78923754 C T 5519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.464;ClippingRankSum=0;DB;DP=487;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.069;SOR=0.656 GT:AD:DP:GQ:PL 0/1:245,240:485:99:5548,0,5582 9 112899361 rs4978872 A C 5585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.068;ClippingRankSum=0;DB;DP=502;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=2.281;SOR=0.535 GT:AD:DP:GQ:PL 0/1:273,227:500:99:5614,0,6748 9 112900785 rs3739456 A G 5419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.548;ClippingRankSum=0;DB;DP=440;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.065;SOR=0.636 GT:AD:DP:GQ:PL 0/1:229,211:440:99:5448,0,5452 9 112918581 rs7862044 T C 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.64;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=-1.141;SOR=0.435 GT:AD:DP:GQ:PL 0/1:70,71:141:99:1920,0,1750 9 112963504 rs10120707 A G 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.573;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=9.219;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.929;SOR=1.095 GT:AD:DP:GQ:PL 0/1:78,58:136:99:1572,0,1954 9 113006420 rs5843 A G 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.59;SOR=0.795 GT:AD:DP:GQ:PL 0/1:37,30:67:99:692,0,845 9 113128844 . GA G 147.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=3.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.38;ReadPosRankSum=0.327;SOR=1.044 GT:AD:DP:GQ:PL 0/1:87,20:129:99:185,0,2023 9 113132221 rs17204533 G A 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=0.322;SOR=0.722 GT:AD:DP:GQ:PL 0/1:53,71:124:99:1655,0,1204 9 113141815 rs992883 A G 1221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.216;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.267;SOR=0.848 GT:AD:DP:GQ:PL 0/1:49,51:100:99:1250,0,1100 9 113166697 rs1410049 T A 2268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.448;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.109;SOR=0.708 GT:AD:DP:GQ:PL 0/1:90,101:191:99:2297,0,1947 9 113169126 rs2281937 G A 3072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.716;SOR=0.651 GT:AD:DP:GQ:PL 0/1:130,125:255:99:3101,0,3238 9 113169630 rs7046213 T C 3452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.863;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.35;ReadPosRankSum=1.339;SOR=0.715 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,91:199:99:0|1:113169630_T_C:3481,0,6424 9 113169631 rs7030192 G A 3452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.09;ReadPosRankSum=1.933;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:111,91:202:99:0|1:113169630_T_C:3481,0,6424 9 113192655 rs2986671 T G 1765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.388;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.967;SOR=0.775 GT:AD:DP:GQ:PL 0/1:73,74:147:99:1794,0,1712 9 113220820 rs10980398 C T 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-0.42;SOR=1.003 GT:AD:DP:GQ:PL 0/1:54,69:123:99:1726,0,1217 9 113233720 rs10980402 G A 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=0.732;SOR=0.643 GT:AD:DP:GQ:PL 0/1:76,102:178:99:2513,0,1811 9 113449489 rs35142681 C T 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.045;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.781;SOR=0.619 GT:AD:DP:GQ:PL 0/1:106,109:215:99:2432,0,2398 9 114090279 rs314452 A G 2726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.466;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=1.137;SOR=0.686 GT:AD:DP:GQ:PL 0/1:96,106:202:99:2755,0,2325 9 114124456 . G GA 154.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.007;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=2.222;QD=1.98;ReadPosRankSum=0.232;SOR=0.346 GT:AD:DP:GQ:PL 0/1:60,18:85:99:192,0,1245 9 114174415 rs2418163 T C 1266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.993;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=4.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.787;SOR=1.101 GT:AD:DP:GQ:PL 0/1:68,53:121:99:1295,0,1561 9 114246471 rs142728928 C G 2941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.058;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-2.102;SOR=0.61 GT:AD:DP:GQ:PL 0/1:108,105:213:99:2970,0,2652 9 114341239 rs375892629 GA G 170.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.661;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=6.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.92;ReadPosRankSum=2.769;SOR=0.333 GT:AD:DP:GQ:PL 0/1:70,19:111:99:208,0,1523 9 114355266 . CAAA C 151.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.839;ClippingRankSum=-0;DP=50;ExcessHet=3.0103;FS=6.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=10.12;ReadPosRankSum=2.232;SOR=3.383 GT:AD:DP:GQ:PL 0/1:8,7:15:99:189,0,116 9 114359624 rs1053959 C A 873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.086;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.123;SOR=0.639 GT:AD:DP:GQ:PL 0/1:51,40:91:99:902,0,1213 9 114454544 rs7869279 T C 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.742;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.71;ReadPosRankSum=-1.358;SOR=0.633 GT:AD:DP:GQ:PL 0/1:36,55:91:99:1549,0,896 9 114454580 rs1475110 A G 2841.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.4;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2870,222,0 9 114462322 rs6477845 A G 627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.613;SOR=0.811 GT:AD:DP:GQ:PL 0/1:27,29:56:99:656,0,658 9 114464487 rs1407390 T C 444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=1.046;SOR=0.384 GT:AD:DP:GQ:PL 0/1:26,20:46:99:473,0,693 9 114470127 rs12683681 A G 511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.218;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.731;SOR=0.877 GT:AD:DP:GQ:PL 0/1:18,22:40:99:540,0,417 9 114484682 rs1337581 T C 1460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=-1.292;SOR=0.778 GT:AD:DP:GQ:PL 0/1:44,55:99:99:1489,0,1033 9 114490308 rs7470491 T C 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.881;SOR=0.723 GT:AD:DP:GQ:PL 0/1:68,54:122:99:1221,0,1678 9 114521086 rs41308926 C T 472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.206;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=6.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=0.38;SOR=1.609 GT:AD:DP:GQ:PL 0/1:34,19:53:99:501,0,877 9 114677046 rs140717465 TTTTTG T 1631.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.879;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.112;SOR=0.896 GT:AD:DP:GQ:PL 0/1:102,47:149:99:1669,0,5912 9 115060205 rs10981348 C G 2145.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=29.8;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2174,214,0 9 115095743 rs7040447 T C 5204.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5233,486,0 9 115567184 rs1891402 T C 4266.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4295,427,0 9 115580008 rs10117709 G C 1755.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1784,176,0 9 115600848 rs7023478 T C 4606.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4635,485,0 9 115652836 rs3802492 G A 8475.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8504,853,0 9 115818949 rs2282076 A T 3084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.826;SOR=0.64 GT:AD:DP:GQ:PL 0/1:151,137:288:99:3113,0,3425 9 115925104 rs3810906 C T 4716.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4745,498,0 9 115931692 rs3810909 A G 6965.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6994,666,0 9 116136198 rs1043836 C T 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.691;SOR=0.698 GT:AD:DP:GQ:PL 0/1:134,122:256:99:2819,0,3367 9 116153900 rs1139488 A G 754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.772;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=1.503;SOR=0.373 GT:AD:DP:GQ:PL 0/1:48,32:80:99:783,0,1264 9 116191244 rs78738447 G A 922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.058;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.454;SOR=0.843 GT:AD:DP:GQ:PL 0/1:42,41:83:99:951,0,977 9 116291514 rs34682731 C T 672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.169;SOR=0.565 GT:AD:DP:GQ:PL 0/1:42,29:71:99:701,0,1167 9 116345968 rs140906223 C T 2900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.235;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=5.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=1.612;SOR=0.652 GT:AD:DP:GQ:PL 0/1:106,114:220:99:2929,0,2765 9 116356373 rs12350531 G C 7212.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.09;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,218:218:99:7241,654,0 9 116356516 rs12341266 A G 7794.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7823,714,0 9 116356529 rs10817493 C G 7503.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7532,725,0 9 116779080 rs141229778 C T 1080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=0.205;SOR=0.726 GT:AD:DP:GQ:PL 0/1:74,56:130:99:1109,0,1650 9 116791161 rs7030167 T C 8059.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8088,794,0 9 116930100 rs2567707 G A 2995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.001;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=0.736;SOR=0.752 GT:AD:DP:GQ:PL 0/1:165,128:293:99:3024,0,3901 9 116930194 rs2567706 A G 3101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.55;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=3.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.182;SOR=0.498 GT:AD:DP:GQ:PL 0/1:118,131:249:99:3130,0,2977 9 116931099 rs2241671 G A 2709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.316;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=0.957;SOR=0.683 GT:AD:DP:GQ:PL 0/1:157,114:271:99:2738,0,3739 9 116931445 rs2808770 T C 3441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.095;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.84;ReadPosRankSum=-0.843;SOR=0.71 GT:AD:DP:GQ:PL 0/1:101,131:232:99:3470,0,2446 9 116931666 rs2567705 A T 1933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.827;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=4.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-2.494;SOR=0.991 GT:AD:DP:GQ:PL 0/1:109,78:187:99:1962,0,2736 9 116931737 rs2808771 C T 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=2.112;SOR=0.449 GT:AD:DP:GQ:PL 0/1:76,44:120:99:964,0,2179 9 116968512 rs41312204 C T 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-1.025;SOR=0.721 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1084,0,1199 9 116973273 rs34350265 C T 1511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.242;SOR=1.016 GT:AD:DP:GQ:PL 0/1:67,69:136:99:1540,0,1623 9 117033022 rs4143245 T C 3138.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3167,339,0 9 117037937 . C G 1637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=0.522;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,69:119:99:1|0:117037915_T_C:1666,0,1609 9 117044751 rs2787330 T C 3874.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3903,356,0 9 117050998 rs10982134 G A 1243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.854;SOR=0.822 GT:AD:DP:GQ:PL 0/1:73,52:125:99:1272,0,1854 9 117051586 rs72762675 C G 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.412;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=6.091;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=-0.524;SOR=0.434 GT:AD:DP:GQ:PL 0/1:86,63:149:99:1364,0,2008 9 117053215 rs1249738 A G 1634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-0.774;SOR=0.591 GT:AD:DP:GQ:PL 0/1:62,72:134:99:1663,0,1456 9 117064345 rs1546048 G A 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.43;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.078;SOR=0.834 GT:AD:DP:GQ:PL 0/1:39,45:84:99:1024,0,908 9 117064405 rs10817586 C G 2312.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2341,222,0 9 117085526 rs147960186 G A 2257.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.11;QD=29.71;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2286,228,0 9 117103973 rs2250242 A G 7011.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=1.315 GT:AD:DP:GQ:PL 1/1:0,218:218:99:7040,653,0 9 117166338 rs6478078 G C 8630.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=1.158 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8659,833,0 9 117186677 rs4979387 A G 6273.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6302,618,0 9 117188566 rs10817610 C T 8368.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8397,856,0 9 117399263 rs41278669 C T 381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.212;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.07;ReadPosRankSum=-0.455;SOR=0.826 GT:AD:DP:GQ:PL 0/1:35,19:54:99:410,0,805 9 117552885 rs3810936 T C 2718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.625;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.571;SOR=0.652 GT:AD:DP:GQ:PL 0/1:128,113:241:99:2747,0,3178 9 117668142 rs3181195 C T 2635.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2664,264,0 9 117783551 rs5900112 TA T 372.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=0;QD=5.48;ReadPosRankSum=2.008;SOR=0.749 GT:AD:DP:GQ:PL 0/1:41,27:73:99:410,0,1055 9 117792583 rs13321 C G 5958.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5987,597,0 9 117797597 rs12347433 T C 2402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=7.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.502;SOR=0.364 GT:AD:DP:GQ:PL 0/1:86,106:192:99:2431,0,2003 9 117808785 rs2104772 T A 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.079;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.014;SOR=0.748 GT:AD:DP:GQ:PL 0/1:95,91:186:99:2347,0,2425 9 117835899 rs1138545 C T 1511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.049;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.382;SOR=0.717 GT:AD:DP:GQ:PL 0/1:93,67:160:99:1540,0,2223 9 117846570 rs2274836 C T 2489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=0.002;SOR=0.603 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2518,0,3671 9 117846580 rs1061494 T C 2284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=0.615;SOR=0.671 GT:AD:DP:GQ:PL 0/1:104,96:200:99:2313,0,4044 9 117848394 rs1757095 T C 8864.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8893,878,0 9 117849314 rs2992147 T C 3170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.501;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.095;SOR=0.896 GT:AD:DP:GQ:PL 0/1:167,122:289:99:3199,0,4014 9 117853022 rs944510 C T 2481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.247;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=8.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=1.709;SOR=0.469 GT:AD:DP:GQ:PL 0/1:113,103:216:99:2510,0,3139 9 118163563 rs2269700 C T 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.094;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=0.33;SOR=0.582 GT:AD:DP:GQ:PL 0/1:100,82:182:99:1763,0,2159 9 118949998 rs12375498 C T 2088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-0.607;SOR=0.767 GT:AD:DP:GQ:PL 0/1:81,82:163:99:2117,0,2150 9 119106881 rs7020782 C A 4971.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5000,527,0 9 119495697 rs7863560 T C 7709.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,267:267:99:7738,801,0 9 119770480 rs3761845 C T 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.814;SOR=0.797 GT:AD:DP:GQ:PL 0/1:106,88:194:99:2035,0,2548 9 119770551 rs7036098 G A 3097.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=1.839 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3126,291,0 9 120053776 rs7848630 T C 6530.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.63;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=2.665;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.16;ReadPosRankSum=2.454;SOR=0.307 GT:AD:DP:GQ:PL 1/1:2,222:224:99:6559,600,0 9 123170733 rs4837768 C G 1489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.08;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=1.363;SOR=0.674 GT:AD:DP:GQ:PL 0/1:49,66:115:99:1518,0,1205 9 123291036 rs4836822 C G 1945.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1974,201,0 9 123342259 rs932975 C A 1545.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1574,159,0 9 123342275 rs932974 A G 1344.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1373,135,0 9 123367681 rs56019987 C G 2168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.2;SOR=0.818 GT:AD:DP:GQ:PL 0/1:122,96:218:99:2197,0,2990 9 123476542 rs369989873 ACGGCGG A 4640.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0;DB;DP=352;ExcessHet=3.0103;FS=7.402;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.819;QD=16;ReadPosRankSum=-1.097;SOR=0.414 GT:AD:DP:GQ:PL 0/1:165,125:292:99:4678,0,7581 9 123550027 rs7026635 G A 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.983;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.522;SOR=0.476 GT:AD:DP:GQ:PL 0/1:58,47:105:99:1000,0,1616 9 123583192 rs1060817 A G 1595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.428;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.555;SOR=0.724 GT:AD:DP:GQ:PL 0/1:65,68:133:99:1624,0,1563 9 123632045 rs1056567 A G 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.422;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.54;ReadPosRankSum=0.173;SOR=0.653 GT:AD:DP:GQ:PL 0/1:47,66:113:99:1897,0,1134 9 123632829 rs4836833 G C 377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.769;SOR=0.379 GT:AD:DP:GQ:PL 0/1:26,18:44:99:406,0,665 9 123671520 rs2239657 G A 1961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=0.942;SOR=0.771 GT:AD:DP:GQ:PL 0/1:120,91:211:99:1990,0,3128 9 123675801 rs3747841 G A 3077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=9.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-0.711;SOR=0.532 GT:AD:DP:GQ:PL 0/1:117,121:238:99:3106,0,3069 9 123725971 rs12237774 C T 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.277;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=3.849;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-0.478;SOR=0.679 GT:AD:DP:GQ:PL 0/1:54,41:95:99:941,0,1271 9 123734287 rs3217100 GAAAC G 1768.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.853;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=0.768;QD=31.03;ReadPosRankSum=-0.235;SOR=0.829 GT:AD:DP:GQ:PL 0/1:12,45:57:99:1806,0,576 9 123737040 rs2269067 G C 2362.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.519 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2391,228,0 9 123782299 rs2230214 G A 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-0.616;SOR=1.146 GT:AD:DP:GQ:PL 0/1:35,36:71:99:885,0,926 9 123783934 rs10985126 T C 2633.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.44;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2662,287,0 9 123800218 rs17216529 C T 439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.433;SOR=0.709 GT:AD:DP:GQ:PL 0/1:21,20:41:99:468,0,527 9 123850770 rs10818503 G A 932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.802;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=1.065;SOR=0.706 GT:AD:DP:GQ:PL 0/1:51,39:90:99:961,0,1233 9 123929920 rs145379701 G A 1663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.465;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.26;ReadPosRankSum=-0.486;SOR=0.573 GT:AD:DP:GQ:PL 0/1:45,64:109:99:1692,0,1048 9 124083614 rs2304393 C T 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=1.853;SOR=0.567 GT:AD:DP:GQ:PL 0/1:59,67:126:99:1563,0,1364 9 124535576 . A C 83.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.791;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=113.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.59;ReadPosRankSum=-2.436;SOR=4.395 GT:AD:DP:GQ:PL 0/1:124,18:142:99:112,0,2754 9 124751390 rs41277112 G A 2956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.003;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=-1.312;SOR=0.898 GT:AD:DP:GQ:PL 0/1:95,119:214:99:2985,0,2164 9 124855211 rs61742319 C T 4172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.604;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.5;MQ=60.68;MQRankSum=4.703;QD=12.06;ReadPosRankSum=0.422;SOR=0.753 GT:AD:DP:GQ:PL 0/1:168,178:346:99:4201,0,4208 9 124855330 rs201653732 G GTGGCCT 2796.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.27;MQRankSum=5.336;QD=16.85;ReadPosRankSum=-0.11;SOR=0.676 GT:AD:DP:GQ:PL 0/1:88,78:166:99:2834,0,6009 9 124914613 rs4679 C T 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=6.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-1.069;SOR=0.975 GT:AD:DP:GQ:PL 0/1:67,67:134:99:1515,0,1603 9 124929161 rs7466389 C T 1574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.465;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=4.849;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=2.165;SOR=1.009 GT:AD:DP:GQ:PL 0/1:80,71:151:99:1603,0,1823 9 124929211 rs1411444 A G 3798.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3827,384,0 9 124975994 rs11789619 C G 2233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-2.585;SOR=0.645 GT:AD:DP:GQ:PL 0/1:110,107:217:99:2262,0,2635 9 125133479 rs1236913 T C 9102.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.079;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.04;ReadPosRankSum=0.388;SOR=0.727 GT:AD:DP:GQ:PL 1/1:2,301:303:99:9131,859,0 9 125140206 rs3842788 G A 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=-1.053;SOR=0.779 GT:AD:DP:GQ:PL 0/1:71,43:114:99:1012,0,2123 9 125140696 rs2282169 G C 2398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=3.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=-1.99;SOR=0.998 GT:AD:DP:GQ:PL 0/1:84,91:175:99:2427,0,2063 9 125239253 rs1962091 T C 2051.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.2;SOR=1.571 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2080,180,0 9 125289083 rs16911867 A G 5422.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5451,504,0 9 125289521 rs10818708 G A 3053.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3082,330,0 9 125315542 rs1831369 C T 2776.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2805,270,0 9 125315557 rs1831370 T C 3107.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.156;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.47;ReadPosRankSum=1.8;SOR=0.909 GT:AD:DP:GQ:PL 1/1:2,100:102:99:3136,256,0 9 125315778 rs1411271 G C 4158.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4187,387,0 9 125316033 rs1341042 T C 5190.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.8 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,116:116:99:1|1:125316033_T_C:5219,358,0 9 125316042 rs1341043 T C 5144.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.35;SOR=0.8 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,116:116:99:1|1:125316033_T_C:5173,352,0 9 125316179 rs1341044 T G 4333.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4362,416,0 9 125316350 rs1411272 C T 3425.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3454,330,0 9 125316455 rs7039436 C T 2197.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2226,221,0 9 125330125 rs10739614 C G 3499.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3528,327,0 9 125330184 rs10985702 A C 3958.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3987,390,0 9 125330325 rs10985703 C G 4585.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4614,431,0 9 125330678 rs10985704 T G 2438.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.952;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=3.716;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.48;ReadPosRankSum=-0.465;SOR=0.771 GT:AD:DP:GQ:PL 1/1:1,79:80:99:2467,230,0 9 125330739 rs1999182 G A 1427.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1456,144,0 9 125377087 rs972925 A G 3854.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3883,384,0 9 125377505 rs1329957 A G 4076.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4105,409,0 9 125377734 rs727913 A G 3161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.501;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.98;ReadPosRankSum=-0.09;SOR=0.918 GT:AD:DP:GQ:PL 0/1:89,122:211:99:3190,0,1984 9 125390874 rs1556189 A C 3054.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=1.158 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3083,321,0 9 125391026 rs1476858 A C 3726.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3755,362,0 9 125391127 rs1476859 C T 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3573,347,0 9 125391241 rs1476860 G A 4424.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4453,447,0 9 125391369 rs1536929 A G 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=0.153;SOR=0.906 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1599,0,1299 9 125391677 rs12347681 T C 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=1.631;SOR=0.586 GT:AD:DP:GQ:PL 0/1:59,78:137:99:2000,0,1397 9 125424507 rs70156 A C 1710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=1.056;SOR=0.699 GT:AD:DP:GQ:PL 0/1:74,74:148:99:1739,0,1858 9 125437756 rs117289796 G A 1502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-0.361;SOR=0.693 GT:AD:DP:GQ:PL 0/1:84,62:146:99:1531,0,2127 9 125438390 rs138897879 G GGT 2354.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.889;QD=11.77;ReadPosRankSum=0.298;SOR=0.657 GT:AD:DP:GQ:PL 0/1:108,92:242:99:2392,0,3186 9 125486968 rs2215530 G A 10101.8 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.16;QD=31.27;SOR=1.126 GT:AD:DP:GQ:PL 1/1:0,323:323:99:10130,967,0 9 125487011 . T C 132.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.338;ClippingRankSum=0;DP=263;ExcessHet=3.0103;FS=10.437;MLEAC=1;MLEAF=0.5;MQ=58.82;MQRankSum=-13.866;QD=0.51;ReadPosRankSum=-6.636;SOR=1.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:236,25:261:99:0|1:125487011_T_C:161,0,10072 9 125487015 . G A 47.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.972;ClippingRankSum=0;DP=260;ExcessHet=3.0103;FS=29.147;MLEAC=1;MLEAF=0.5;MQ=59.04;MQRankSum=-15.478;QD=0.19;ReadPosRankSum=-4.953;SOR=3.916 GT:AD:DP:GQ:PGT:PID:PL 0/1:242,16:258:76:0|1:125487011_T_C:76,0,10239 9 125512193 rs10760252 C A 6790.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.005;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=3.715;MLEAC=2;MLEAF=1;MQ=59.95;MQRankSum=0;QD=27.49;ReadPosRankSum=1.939;SOR=0.744 GT:AD:DP:GQ:PL 1/1:1,246:247:99:6819,725,0 9 125512575 rs4838012 G A 5988.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.08;QD=29.65;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6017,605,0 9 125512770 rs10985760 T C 1989.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.54;QD=32.09;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2018,186,0 9 125512788 rs10818740 G A 3698.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.34;QD=46.82;SOR=1.068 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,79:79:99:1|1:125512788_G_A:3727,256,0 9 125512795 rs10818741 G C 4043.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.05;QD=43.02;SOR=1.029 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,94:94:99:1|1:125512788_G_A:4072,286,0 9 125512826 rs28670025 G A 4401.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.72;QD=31.44;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4430,419,0 9 125512943 rs117703463 C T 2089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.875;SOR=0.937 GT:AD:DP:GQ:PL 0/1:87,89:176:99:2118,0,2229 9 125655308 . TA T 177.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.41;ReadPosRankSum=-2.716;SOR=0.735 GT:AD:DP:GQ:PL 0/1:12,12:33:99:215,0,288 9 125760863 rs587364 T C 2437.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=1.497 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2466,242,0 9 125761051 rs605546 G A 2116.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.745 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2145,212,0 9 125898643 rs72753292 T C 1837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.313;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=4.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-1.329;SOR=1.045 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1866,0,2171 9 125920376 rs803736 G A 3522.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3551,378,0 9 126118517 rs60364866 AGCAGAGC A 4368.73 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=44.13;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:4406,298,0 9 126125318 rs2808415 C A 8580.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8609,827,0 9 126128211 rs1105223 T C 2528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.173;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.486;SOR=0.596 GT:AD:DP:GQ:PL 0/1:104,108:212:99:2557,0,2429 9 126128253 rs1105222 G C 3377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=1.527;SOR=0.553 GT:AD:DP:GQ:PL 0/1:143,147:290:99:3406,0,3573 9 126129904 rs10818812 C T 1060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.517;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=0.278;SOR=0.649 GT:AD:DP:GQ:PL 0/1:85,51:136:99:1089,0,2025 9 126133547 rs2488602 T C 7897.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.37;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7926,732,0 9 126134542 rs61740213 G A 3445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=2.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-1.23;SOR=0.531 GT:AD:DP:GQ:PL 0/1:105,152:257:99:3474,0,2226 9 126135715 rs2488601 A G 7864.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7893,734,0 9 126136139 rs73571431 C T 4352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.494;SOR=0.625 GT:AD:DP:GQ:PL 0/1:169,176:345:99:4381,0,4291 9 126144746 rs2491348 T C 10168.8 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=1.129 GT:AD:DP:GQ:PL 1/1:0,316:316:99:10197,949,0 9 126144758 rs2808409 T C 8563.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8592,848,0 9 126146197 rs2808411 C G 7190.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.367 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7219,693,0 9 126520068 rs9785285 T C 3062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-1.605;SOR=0.653 GT:AD:DP:GQ:PL 0/1:129,137:266:99:3091,0,2853 9 127083725 rs10760352 C T 1880.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1909,191,0 9 127101924 rs10760354 C T 2523.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2552,252,0 9 127177161 rs4574 A G 2469.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2498,234,0 9 127255448 rs2297605 G A 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.794;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.424;SOR=0.788 GT:AD:DP:GQ:PL 0/1:101,97:198:99:2204,0,2215 9 127561559 rs2281923 C T 2063.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.29;SOR=2.157 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2092,186,0 9 127563364 rs913231 G A 2835.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2864,282,0 9 127566378 rs7874348 A G 3789.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3818,378,0 9 127572710 rs7020260 C G 5460.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5489,552,0 9 127616537 rs12375547 A G 7490.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7519,746,0 9 127618776 rs2274970 A G 7677.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7706,729,0 9 127618839 rs10760381 C G 8259.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,259:259:99:8288,777,0 9 127619625 rs35041146 G GC 3444.73 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=31.03;SOR=1.35 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3482,340,0 9 127619922 rs944952 T C 7222.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,225:225:99:7251,675,0 9 127643456 rs687434 T C 545.77 PASS AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.99;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,21:21:63:574,63,0 9 127661645 rs634710 G A 5063.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5092,521,0 9 127674200 rs583134 A C 3149.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3178,312,0 9 127818276 rs589292 C T 803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.853;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=-0.642;SOR=0.478 GT:AD:DP:GQ:PL 0/1:55,39:94:99:832,0,1248 9 127951863 rs466994 G A 3603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.557;SOR=0.692 GT:AD:DP:GQ:PL 0/1:143,153:296:99:3632,0,3524 9 128074807 rs432757 T C 2577.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2606,255,0 9 128246786 rs2070113 G A 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.017;SOR=0.668 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1888,0,1957 9 129102840 rs1888156 G A 1569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.101;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-1.09;SOR=0.768 GT:AD:DP:GQ:PL 0/1:100,68:168:99:1598,0,2335 9 129143435 rs2286889 A G 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-0.513;SOR=0.853 GT:AD:DP:GQ:PL 0/1:34,47:81:99:1146,0,784 9 129453229 rs2277158 A G 2550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.773;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-1.729;SOR=0.651 GT:AD:DP:GQ:PL 0/1:90,101:191:99:2579,0,2047 9 129455587 rs13295990 G C 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.132;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-0.92;SOR=0.883 GT:AD:DP:GQ:PL 0/1:98,80:178:99:2177,0,2637 9 129595895 rs3118994 T C 2993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.12;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.196;SOR=0.702 GT:AD:DP:GQ:PL 0/1:96,119:215:99:3022,0,2381 9 129937020 rs55918931 G A 639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.11;ReadPosRankSum=1.485;SOR=1.08 GT:AD:DP:GQ:PL 0/1:59,31:90:99:668,0,1507 9 130164818 rs3802367 T C 5330.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5359,540,0 9 130165973 rs34064803 T C 2202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.356;SOR=0.604 GT:AD:DP:GQ:PL 0/1:97,92:189:99:2231,0,2341 9 130191186 rs13292096 C T 1477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=1.231;SOR=0.844 GT:AD:DP:GQ:PL 0/1:59,64:123:99:1506,0,1324 9 130197414 rs4504745 A G 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=0.269;SOR=0.675 GT:AD:DP:GQ:PL 0/1:96,87:183:99:1884,0,2207 9 130206295 rs142661397 AT A 1650.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.555;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=-0.046;SOR=0.771 GT:AD:DP:GQ:PL 0/1:90,86:176:99:1688,0,2035 9 130206762 rs2248025 C T 2683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=1.299;SOR=0.696 GT:AD:DP:GQ:PL 0/1:127,105:232:99:2712,0,3519 9 130219669 rs2243906 C T 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.56;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=2.728;SOR=0.831 GT:AD:DP:GQ:PL 0/1:89,80:169:99:1610,0,2161 9 130242109 rs1539568 C T 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.128;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.948;SOR=0.999 GT:AD:DP:GQ:PL 0/1:102,76:178:99:1748,0,2441 9 130242166 rs1539567 A G 6838.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6867,692,0 9 130259618 rs2248822 A C 2867.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2896,282,0 9 130289615 rs2243558 C G 1228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.115;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=11.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.235;SOR=0.23 GT:AD:DP:GQ:PL 0/1:76,52:128:99:1257,0,1955 9 130475011 rs522328 T C 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.721;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.269;SOR=0.611 GT:AD:DP:GQ:PL 0/1:115,112:227:99:2948,0,2775 9 130475442 rs497632 A C 2249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.865;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15;ReadPosRankSum=-0.744;SOR=0.604 GT:AD:DP:GQ:PL 0/1:71,79:150:99:2278,0,1804 9 130485618 rs537881 G A 1515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=9.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=1.091;SOR=1.454 GT:AD:DP:GQ:PL 0/1:85,63:148:99:1544,0,2165 9 130486384 rs836333 C T 2907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.07;ReadPosRankSum=-0.914;SOR=0.885 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,82:181:99:0|1:130486384_C_T:2936,0,5181 9 130486385 rs35761147 G GC 2898.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.443;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=2.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.19;ReadPosRankSum=-1.105;SOR=0.928 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,82:179:99:0|1:130486384_C_T:2936,0,5181 9 130489558 rs472144 A G 3145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.299;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.747;SOR=0.745 GT:AD:DP:GQ:PL 0/1:120,119:239:99:3174,0,2801 9 130493513 rs482095 A G 3133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.314;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=1.554;SOR=0.723 GT:AD:DP:GQ:PL 0/1:140,121:261:99:3162,0,3331 9 130494957 rs538066 T C 9202.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.63;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,282:282:99:9231,846,0 9 130495633 rs564754 C G 2936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.945;SOR=0.644 GT:AD:DP:GQ:PL 0/1:156,117:273:99:2965,0,3945 9 130504070 rs514024 G A 2910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.819;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=4.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=0.432;SOR=0.976 GT:AD:DP:GQ:PL 0/1:101,104:205:99:2939,0,2522 9 130507388 rs2233508 G C 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.257;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.714;SOR=0.615 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1238,0,1497 9 130536484 rs55932444 C T 1493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.237;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.99;ReadPosRankSum=-1.163;SOR=0.888 GT:AD:DP:GQ:PL 0/1:119,68:187:99:1522,0,2928 9 130536717 rs10760500 G A 917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-1.591;SOR=0.742 GT:AD:DP:GQ:PL 0/1:56,39:95:99:946,0,1631 9 130565267 rs10760502 A G 2348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.148;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=4.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=1.474;SOR=0.958 GT:AD:DP:GQ:PL 0/1:138,104:242:99:2377,0,3279 9 130572123 rs7027767 A G 332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.56;ReadPosRankSum=-0.299;SOR=1.08 GT:AD:DP:GQ:PL 0/1:31,13:44:99:361,0,795 9 130605385 rs11545664 C T 3374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.239;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=7.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=1.32;SOR=0.39 GT:AD:DP:GQ:PL 0/1:114,139:253:99:3403,0,3016 9 130630639 rs913986 A G 5782.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5811,585,0 9 130670652 rs1043012 A G 6001.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.464 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6030,570,0 9 130672221 rs10739700 C T 5683.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5712,523,0 9 130690412 rs10760515 G C 6446.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6475,630,0 9 130698029 rs7997 G C 4615.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4644,459,0 9 130698043 rs6781 A G 4367.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4396,438,0 9 130707081 rs2274426 A G 5595.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5624,531,0 9 130829039 rs1539350 A G 10574.8 PASS AC=2;AF=1;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,330:330:99:10603,989,0 9 130860866 rs947624 T C 6782.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.197;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.26;ReadPosRankSum=-0.919;SOR=0.841 GT:AD:DP:GQ:PL 1/1:2,215:217:99:6811,602,0 9 130864676 rs7859709 T C 3938.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3967,399,0 9 130883511 rs2040004 C T 4701.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4730,462,0 9 130884753 rs13283456 C T 1426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.239;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.066;SOR=0.859 GT:AD:DP:GQ:PL 0/1:66,63:129:99:1455,0,1532 9 130889705 rs4837244 G A 5140.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.315 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5169,494,0 9 130914170 rs11794980 C G 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.368;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=-0.234;SOR=0.6 GT:AD:DP:GQ:PL 0/1:70,85:155:99:2175,0,1707 9 130932396 rs59232258 AAC A 3225.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.36;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=28.8;ReadPosRankSum=0.786;SOR=0.498 GT:AD:DP:GQ:PL 0/1:32,80:112:99:3263,0,1129 9 131020795 rs112603354 GCCT G 225.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.39;ReadPosRankSum=-0.938;SOR=0.768 GT:AD:DP:GQ:PL 0/1:145,17:162:99:263,0,6158 9 131085373 rs3003601 G C 7682.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7711,750,0 9 131095112 rs7850697 A C 521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.541;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.397;SOR=0.754 GT:AD:DP:GQ:PL 0/1:20,23:43:99:550,0,426 9 131186401 rs7038316 C T 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=1.387;SOR=0.473 GT:AD:DP:GQ:PL 0/1:68,46:114:99:1136,0,1860 9 131196695 rs7258 C T 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.58;ReadPosRankSum=1.175;SOR=0.716 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,62:145:99:0|1:131196695_C_T:2432,0,4742 9 131196704 rs7259 G A 2405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.142;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.62;ReadPosRankSum=1.61;SOR=0.598 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,67:154:99:0|1:131196695_C_T:2434,0,4875 9 131196905 rs60807982 TGG T 2156.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=0.473;SOR=0.482 GT:AD:DP:GQ:PL 0/1:82,59:141:99:2194,0,3129 9 131235321 rs4512487 A G 6969.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6998,699,0 9 131245175 rs11290748 CT C 628.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.857;QD=12.09;ReadPosRankSum=0.985;SOR=0.762 GT:AD:DP:GQ:PL 0/1:20,32:78:99:666,0,219 9 131346218 rs10760566 A C 6311.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6340,640,0 9 131360750 rs2227864 C T 3354.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3383,354,0 9 131375701 rs1415568 A G 3888.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3917,411,0 9 131379967 rs2227862 C T 5586.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5615,589,0 9 131397479 rs4837291 G A 6871.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6900,673,0 9 131398636 rs10760570 C T 8242.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8271,878,0 9 131403096 rs2298045 A G 10236.8 PASS AC=2;AF=1;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,338:338:99:10265,1013,0 9 131418828 rs4837292 A C 6203.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6232,611,0 9 131454120 rs3750330 C T 2630.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=2.01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2659,248,0 9 131455903 rs4836618 C T 3790.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=29.85;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3819,381,0 9 131476649 rs41275914 G A 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.613;SOR=0.75 GT:AD:DP:GQ:PL 0/1:72,72:144:99:1779,0,1822 9 131479023 rs10739729 T C 3327.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3356,329,0 9 131482467 rs3750325 T C 1010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-0.366;SOR=0.518 GT:AD:DP:GQ:PL 0/1:67,45:112:99:1039,0,1596 9 131483749 rs2900268 T A 8149.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8178,798,0 9 131565554 rs1572912 T C 3519.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3548,341,0 9 131580998 rs2293969 C T 7231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.84;ReadPosRankSum=-0.854;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:161,186:347:99:0|1:131580998_C_T:7260,0,6903 9 131581004 . C T 7218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0;DP=348;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.74;ReadPosRankSum=-1.923;SOR=0.718 GT:AD:DP:GQ:PGT:PID:PL 0/1:159,189:348:99:0|1:131580998_C_T:7247,0,6796 9 131584631 rs2280844 C T 2377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.043;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.065;SOR=0.799 GT:AD:DP:GQ:PL 0/1:112,98:210:99:2406,0,2696 9 131584880 rs199801162 CAGTA C 4067.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.272;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=2.325;QD=16.01;ReadPosRankSum=0.217;SOR=0.822 GT:AD:DP:GQ:PL 0/1:145,109:254:99:4105,0,8081 9 131585069 rs2280843 A G 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.196;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=2.067;SOR=0.728 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1726,0,2138 9 131586374 rs7033070 G A 1306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=1.002;SOR=0.887 GT:AD:DP:GQ:PL 0/1:56,55:111:99:1335,0,1412 9 131588652 rs2997914 T C 3540.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3569,339,0 9 131588813 rs6478853 C G 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.471;SOR=0.425 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1052,0,1016 9 131588888 rs6478854 G C 2652.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2681,254,0 9 131591372 rs2293967 T A 517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=-1.318;SOR=0.582 GT:AD:DP:GQ:PL 0/1:33,26:59:99:546,0,783 9 131600111 rs2280841 T C 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=-1.001;SOR=0.75 GT:AD:DP:GQ:PL 0/1:55,63:118:99:1677,0,1424 9 131670457 rs3750320 T C 3522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.095;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.388;SOR=0.601 GT:AD:DP:GQ:PL 0/1:142,139:281:99:3551,0,3390 9 131670919 rs3750319 T C 3402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.502;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.376;SOR=0.71 GT:AD:DP:GQ:PL 0/1:183,139:322:99:3431,0,4422 9 131764014 rs12336276 A C 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.428;SOR=0.595 GT:AD:DP:GQ:PL 0/1:62,49:111:99:1303,0,1618 9 131772389 rs3750340 T G 3102.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3131,315,0 9 131860901 rs3118635 G T 6391.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6420,665,0 9 131862781 rs10988204 G A 2727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.13;ReadPosRankSum=0.466;SOR=0.941 GT:AD:DP:GQ:PL 0/1:80,113:193:99:2756,0,1931 9 131898880 rs1536548 A G 8032.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8061,816,0 9 131904777 rs11554659 C T 2370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.186;SOR=0.698 GT:AD:DP:GQ:PL 0/1:103,101:204:99:2399,0,2572 9 131905177 rs2254230 T G 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=-0.262;SOR=0.648 GT:AD:DP:GQ:PL 0/1:64,65:129:99:1762,0,1851 9 131940019 rs184457 G A 3722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.355;SOR=0.933 GT:AD:DP:GQ:PL 0/1:178,163:341:99:3751,0,4223 9 132377900 rs918165 C T 2214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=0.542;SOR=0.526 GT:AD:DP:GQ:PL 0/1:135,94:229:99:2243,0,3384 9 132382596 rs111606531 C A 3052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.838;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.476;SOR=0.785 GT:AD:DP:GQ:PL 0/1:131,133:264:99:3081,0,3489 9 132400480 rs3739851 G A 3231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.042;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.24;SOR=0.744 GT:AD:DP:GQ:PL 0/1:140,135:275:99:3260,0,3456 9 132402908 rs2241247 C G 8985.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,287:289:99:9014,860,0 9 132580901 rs1801968 C G 2258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-1.674;SOR=0.734 GT:AD:DP:GQ:PL 0/1:137,94:231:99:2287,0,3833 9 132597062 rs41278736 A C 816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.429;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=7.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.464;SOR=1.645 GT:AD:DP:GQ:PL 0/1:34,30:64:99:845,0,803 9 132618578 rs4836674 T C 2955.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2984,294,0 9 132618650 rs41278740 C G 1399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=1.124;SOR=0.721 GT:AD:DP:GQ:PL 0/1:59,64:123:99:1428,0,1307 9 132620364 rs10819568 T C 4461.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4490,461,0 9 132623293 rs1503375 C T 3319.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.62;ReadPosRankSum=2.489;SOR=0.912 GT:AD:DP:GQ:PL 1/1:1,115:116:99:3348,312,0 9 132623868 rs10115249 T C 4531.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4560,464,0 9 132630664 rs10602985 TGAC T 13276.7 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=44.4;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,299:299:99:13314,901,0 9 132631680 rs6478920 T C 3599.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3628,362,0 9 132636031 rs4332226 A G 10400.8 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.83;SOR=0.984 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,232:232:99:1|1:132636031_A_G:10429,698,0 9 132636033 rs4415421 T C 10400.8 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.83;SOR=0.984 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,232:232:99:1|1:132636031_A_G:10429,698,0 9 132637712 rs735115 G A 2526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.424;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=6.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.077;SOR=1.072 GT:AD:DP:GQ:PL 0/1:144,103:247:99:2555,0,3623 9 132640726 rs2296788 T G 2646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.224;SOR=0.626 GT:AD:DP:GQ:PL 0/1:88,119:207:99:2675,0,1967 9 132658078 rs71738364 G GT 352.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=8.119;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0;QD=3.18;ReadPosRankSum=-2.03;SOR=1.527 GT:AD:DP:GQ:PL 0/1:84,27:119:99:390,0,1680 9 132662786 rs1023000 C T 5549.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5578,586,0 9 132686186 rs4836680 A G 3846.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.215 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3875,373,0 9 132872686 rs4837460 A G 1945.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1974,195,0 9 132887249 rs11316087 TA T 495.82 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.53;ReadPosRankSum=-0.912;SOR=0.773 GT:AD:DP:GQ:PL 0/1:5,25:37:24:533,0,24 9 133294244 rs13294886 G A 6124.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6153,609,0 9 133306881 rs41302663 G A 3148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.545;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=1.012;SOR=0.791 GT:AD:DP:GQ:PL 0/1:129,129:258:99:3177,0,3016 9 133308780 rs1006615 C T 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.65;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-1.25;SOR=0.654 GT:AD:DP:GQ:PL 0/1:90,85:175:99:2175,0,2446 9 133309014 rs7860727 T C 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.275;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=2.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.213;SOR=0.879 GT:AD:DP:GQ:PL 0/1:111,115:226:99:2859,0,2592 9 133346920 rs652313 A G 4680.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4709,485,0 9 133710819 rs11433463 T TC 1370.73 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.84;SOR=1.911 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,32:32:96:1|1:133710804_T_C:1408,96,0 9 133761001 rs1056171 A G 6738.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6767,690,0 9 133884820 rs3739512 T G 2931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.91;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.226;SOR=0.624 GT:AD:DP:GQ:PL 0/1:133,122:255:99:2960,0,3138 9 133901819 rs2275137 C A 3304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=3.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.462;SOR=0.915 GT:AD:DP:GQ:PL 0/1:167,142:309:99:3333,0,4043 9 133911598 rs2275132 A G 2287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.424;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=5.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.764;SOR=1.038 GT:AD:DP:GQ:PL 0/1:93,98:191:99:2316,0,1965 9 133924451 rs869457 C T 826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=0.512;SOR=0.631 GT:AD:DP:GQ:PL 0/1:49,35:84:99:855,0,1212 9 133927878 rs10901333 A G 3571.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.589 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3600,341,0 9 133928088 rs12006192 T C 1022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=4.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-0.865;SOR=1.147 GT:AD:DP:GQ:PL 0/1:48,42:90:99:1051,0,1321 9 133928345 rs12349966 C T 3452.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3481,345,0 9 133936571 rs3739510 C G 5023.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5052,510,0 9 133948049 rs2275140 A G 4126.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=1.153 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4155,402,0 9 133951230 rs3818800 C T 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.474;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.249;SOR=0.822 GT:AD:DP:GQ:PL 0/1:97,80:177:99:1975,0,2466 9 133962930 rs7024108 C T 2292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.663;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.06;SOR=0.557 GT:AD:DP:GQ:PL 0/1:118,97:215:99:2321,0,2857 9 133986980 rs353526 T G 4056.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4085,405,0 9 133987060 rs353525 G A 4040.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4069,420,0 9 134020092 rs103612 C T 2074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.962;SOR=0.829 GT:AD:DP:GQ:PL 0/1:92,92:184:99:2103,0,2192 9 134021630 rs2296710 A G 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.3;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.537;SOR=0.656 GT:AD:DP:GQ:PL 0/1:103,82:185:99:2037,0,2379 9 134062770 . CT C 153.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.52;ReadPosRankSum=-0.991;SOR=0.559 GT:AD:DP:GQ:PL 0/1:20,14:54:99:191,0,368 9 134136515 rs352952 A G 5447.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.32;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5476,451,0 9 134136677 rs352951 A G 5484.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=1.07 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5513,516,0 9 134165368 rs7029366 G C 1569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.807;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.54;ReadPosRankSum=0.189;SOR=1.02 GT:AD:DP:GQ:PL 0/1:47,54:101:99:1598,0,1144 9 134183379 rs2966332 C T 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.208;SOR=0.683 GT:AD:DP:GQ:PL 0/1:156,132:288:99:3075,0,3774 9 134183503 rs2986606 T C 3898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=1.122;SOR=0.724 GT:AD:DP:GQ:PL 0/1:209,166:375:99:3927,0,5030 9 134342938 rs10793870 T C 1766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.42;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.584;SOR=0.63 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1795,0,1732 9 134346315 rs4310250 T C 4113.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.72;SOR=1.629 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4142,366,0 9 134350323 rs10736851 C G 6484.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6513,609,0 9 134350458 rs10751478 C T 5948.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5977,564,0 9 134350647 rs10793873 T C 6915.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6944,655,0 9 134351065 rs7858488 G T 8557.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8586,871,0 9 134351343 rs11243403 C T 3556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=2.427;SOR=0.563 GT:AD:DP:GQ:PL 0/1:127,139:266:99:3585,0,3381 9 134361581 rs10793875 T A 1693.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1722,180,0 9 134385436 rs2296949 A G 7206.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7235,727,0 9 134386744 rs10901065 T C 5835.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5864,602,0 9 134387488 rs3739494 T C 3443.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.77;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3472,371,0 9 134397624 rs4740165 C T 6518.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.22;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6547,693,0 9 134401335 rs2296957 C T 5294.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5323,566,0 9 134406071 rs7867616 C G 5849.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5878,557,0 9 134467578 rs3215862 GA G 1062.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=5.511;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.902;QD=12.5;ReadPosRankSum=2.054;SOR=0.33 GT:AD:DP:GQ:PL 0/1:37,48:85:99:1100,0,877 9 135073877 rs3824574 C T 2060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=0.152;SOR=0.806 GT:AD:DP:GQ:PL 0/1:139,88:227:99:2089,0,3995 9 135073967 rs3739930 C T 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=1.738;SOR=0.758 GT:AD:DP:GQ:PL 0/1:90,91:181:99:2204,0,2163 9 135102254 rs2149171 C T 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.74;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.701;SOR=0.604 GT:AD:DP:GQ:PL 0/1:86,81:167:99:1923,0,2331 9 135105944 rs2274855 G A 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.41;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-1.668;SOR=0.833 GT:AD:DP:GQ:PL 0/1:73,55:128:99:1236,0,1802 9 135105964 rs4962173 A G 4182.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4211,426,0 9 135152543 rs34769225 TA T 31.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.047;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.45;ReadPosRankSum=0.046;SOR=0.944 GT:AD:DP:GQ:PL 0/1:60,11:79:69:69,0,1436 9 135202829 rs543573 T C 4941.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,165:167:99:4970,493,0 9 135203231 rs1183768 C T 5502.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5531,546,0 9 135203409 rs1185193 A C 5194.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.47;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5223,479,0 9 135206460 rs9411449 A G 2830.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2859,282,0 9 135263573 rs556386 G T 3083.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.53;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3112,336,0 9 135273607 rs504525 C G 5125.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5154,520,0 9 135374898 rs562350 T C 2642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.416;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=1.812;SOR=0.786 GT:AD:DP:GQ:PL 0/1:104,109:213:99:2671,0,2390 9 135470414 rs306547 T C 9110.77 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.939 GT:AD:DP:GQ:PL 1/1:0,324:324:99:9139,971,0 9 135522454 rs377437331 AAAGT A 3327.73 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=43.79;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,76:76:99:3365,230,0 9 135782221 rs7862221 T C 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.31;ReadPosRankSum=1.095;SOR=0.764 GT:AD:DP:GQ:PL 0/1:29,44:73:99:1146,0,703 9 135786904 rs1073123 A G 963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.041;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=0.108;SOR=0.495 GT:AD:DP:GQ:PL 0/1:53,42:95:99:992,0,1279 9 135944524 rs201255412 C T 588.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.072;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.5;MQ=30.11;MQRankSum=-0.219;QD=9.06;ReadPosRankSum=-1.165;SOR=0.502 GT:AD:DP:GQ:PL 0/1:35,30:65:99:617,0,802 9 135944586 rs200119384 C T 395.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27;MQRankSum=0;QD=14.66;ReadPosRankSum=0.768;SOR=1.101 GT:AD:DP:GQ:PL 0/1:11,16:27:99:424,0,268 9 135946599 rs488087 C T 6842.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;MQRankSum=-0.078;QD=30.69;ReadPosRankSum=1.173;SOR=0.315 GT:AD:DP:GQ:PL 1/1:1,222:223:99:6871,627,0 9 135974079 rs1062356 G C 4715.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4744,474,0 9 135982088 rs2073822 A C 2893.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2922,291,0 9 135983504 rs2285375 T C 6861.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6890,642,0 9 136081289 rs146582704 T C 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.565;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.88;MQRankSum=-6.194;QD=8.37;ReadPosRankSum=0.495;SOR=0.677 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,57:213:99:0|1:136081261_AG_A:1811,0,6924 9 136083580 rs2073870 T G 4496.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.8;QD=30.59;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4525,440,0 9 136131289 rs8176748 C T 9723.77 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,329:329:99:9752,986,0 9 136131347 rs8176745 G A 7923.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,283:283:99:7952,831,0 9 136131437 rs8176742 C T 8292.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8321,815,0 9 136131472 rs8176740 A T 7972.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,254:254:99:8001,762,0 9 136132873 rs8176720 T C 5582.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5611,555,0 9 136213521 rs616836 T C 5838.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5867,605,0 9 136227019 rs56677055 G C 3241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.674;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=0.626;SOR=0.791 GT:AD:DP:GQ:PL 0/1:106,126:232:99:3270,0,2432 9 136227260 rs12763 A G 5415.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5444,542,0 9 136228006 rs34939258 G A 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.197;SOR=0.69 GT:AD:DP:GQ:PL 0/1:63,71:134:99:1504,0,1487 9 136234124 rs1179033 A G 6609.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6638,608,0 9 136245903 rs7852803 A G 1256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.082;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-1.033;SOR=0.831 GT:AD:DP:GQ:PL 0/1:39,52:91:99:1285,0,844 9 136260721 rs41297211 G A 1769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=1.914;SOR=0.59 GT:AD:DP:GQ:PL 0/1:58,77:135:99:1798,0,1375 9 136262349 . A T 1957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0;DP=183;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.128;SOR=0.791 GT:AD:DP:GQ:PL 0/1:93,89:182:99:1986,0,2228 9 136268038 rs3124748 C T 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=6.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.601;SOR=1.146 GT:AD:DP:GQ:PL 0/1:81,93:174:99:2357,0,2121 9 136268084 rs3124747 A G 7370.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7399,736,0 9 136268897 rs36079470 G A 4609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.29;ReadPosRankSum=-1.827;SOR=0.66 GT:AD:DP:GQ:PGT:PID:PL 0/1:129,123:252:99:0|1:136268897_G_A:4638,0,4878 9 136268912 rs28510482 A G 4707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.39;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=4.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.32;ReadPosRankSum=-1.205;SOR=0.469 GT:AD:DP:GQ:PGT:PID:PL 0/1:128,129:257:99:0|1:136268897_G_A:4736,0,4761 9 136268952 rs33919837 G T 5714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.902;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=5.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.2;ReadPosRankSum=1.826;SOR=0.473 GT:AD:DP:GQ:PGT:PID:PL 0/1:158,156:314:99:0|1:136268952_G_T:5743,0,6049 9 136268962 rs28714280 G A 5800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.798;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=7.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.36;ReadPosRankSum=1.549;SOR=0.67 GT:AD:DP:GQ:PGT:PID:PL 0/1:158,158:316:99:0|1:136268952_G_T:5829,0,6103 9 136269143 rs17150554 G A 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.7;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.157;SOR=0.701 GT:AD:DP:GQ:PL 0/1:70,60:130:99:1451,0,1859 9 136270070 rs35348753 A G 1535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.316;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=0.566;SOR=0.744 GT:AD:DP:GQ:PL 0/1:87,62:149:99:1564,0,2132 9 136277480 rs2285486 A G 7539.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.9;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,210:210:99:7568,630,0 9 136277482 rs2285487 T C 2322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.614;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.552;SOR=0.882 GT:AD:DP:GQ:PL 0/1:116,92:208:99:2351,0,2790 9 136279935 rs6597630 C T 1710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.891;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.08;QD=10.83;ReadPosRankSum=-0.438;SOR=0.614 GT:AD:DP:GQ:PL 0/1:86,72:158:99:1739,0,2081 9 136287582 rs34024143 C T 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.88;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.53;SOR=0.58 GT:AD:DP:GQ:PL 0/1:76,93:169:99:2069,0,1680 9 136289423 rs35410697 C T 3158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.77;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=0.937;SOR=0.557 GT:AD:DP:GQ:PL 0/1:95,128:223:99:3187,0,2473 9 136290672 rs28571612 G A 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.391;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-0.988;SOR=0.759 GT:AD:DP:GQ:PL 0/1:93,77:170:99:1765,0,2202 9 136291063 rs3118667 C T 2911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.209;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=2.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=1.068;SOR=0.572 GT:AD:DP:GQ:PL 0/1:148,131:279:99:2940,0,3410 9 136291361 rs34054981 C T 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.165;SOR=0.666 GT:AD:DP:GQ:PL 0/1:101,93:194:99:2206,0,2556 9 136291469 rs36219245 T G 2348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.616;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=0.408;SOR=0.852 GT:AD:DP:GQ:PL 0/1:83,90:173:99:2377,0,2003 9 136295232 rs28729234 C T 2998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=0.792;SOR=0.579 GT:AD:DP:GQ:PL 0/1:114,126:240:99:3027,0,2798 9 136301982 rs2301612 C G 5221.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5250,495,0 9 136305530 rs28647808 C G 2031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-0.916;SOR=0.562 GT:AD:DP:GQ:PL 0/1:113,86:199:99:2060,0,2982 9 136319600 rs34934621 G A 3470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.571;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=3.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.296;SOR=0.881 GT:AD:DP:GQ:PL 0/1:133,146:279:99:3499,0,3100 9 136324239 rs1055432 C A 2839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.844;SOR=0.81 GT:AD:DP:GQ:PL 0/1:123,128:251:99:2868,0,2878 9 136328657 rs3124765 T C 5144.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5173,525,0 9 136339181 rs28584627 C T 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=1.074;SOR=0.574 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1738,0,1712 9 136340200 rs2073935 T G 7065.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7094,705,0 9 136379890 rs17758315 A G 4843.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4872,471,0 9 136409580 rs9802778 T G 3041.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=1.158 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3070,321,0 9 136412170 rs2073874 C T 4041.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4070,426,0 9 136412236 rs2073875 A T 5373.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.56;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5402,583,0 9 136412255 rs2073876 A C 5323.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5352,572,0 9 136412346 rs2073878 C T 4193.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4222,431,0 9 136507444 rs45465204 A G 2915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.546;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.682;SOR=0.718 GT:AD:DP:GQ:PL 0/1:116,121:237:99:2944,0,2586 9 136507594 rs45549938 C T 1823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.629;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=1.738;SOR=0.591 GT:AD:DP:GQ:PL 0/1:86,81:167:99:1852,0,2250 9 136518097 rs77905 A G 2361.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2390,249,0 9 136522187 rs1611131 A G 4186.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4215,435,0 9 136536679 rs129932 G A 2105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=7.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.66;ReadPosRankSum=-1.007;SOR=1.12 GT:AD:DP:GQ:PL 0/1:169,106:275:99:2134,0,4247 9 136536793 rs2519123 C G 2908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=4.231;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.157;SOR=0.493 GT:AD:DP:GQ:PL 0/1:130,123:255:99:2937,0,3336 9 136555629 rs886016 T C 2499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.298;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.62;ReadPosRankSum=1.548;SOR=0.653 GT:AD:DP:GQ:PL 0/1:73,98:171:99:2528,0,1530 9 136559460 rs2073817 C T 1436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.07;ReadPosRankSum=-0.27;SOR=0.536 GT:AD:DP:GQ:PL 0/1:105,73:178:99:1465,0,2584 9 136573412 rs2073815 G A 2247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=7.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.369;SOR=0.353 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2276,0,2344 9 136599146 rs573904 C T 3477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.135;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=2.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=2.183;SOR=0.786 GT:AD:DP:GQ:PL 0/1:115,139:254:99:3506,0,2732 9 136599315 rs2488553 G A 4238.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.56 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4267,425,0 9 136637177 . A ACACACGGCCCCGGCGGTCACTGCGTGAGGGC 2075.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=3.044;MLEAC=1;MLEAF=0.5;MQ=64.43;MQRankSum=8.862;QD=22.81;ReadPosRankSum=0.18;SOR=0.392 GT:AD:DP:GQ:PL 0/1:35,56:91:99:2113,0,1435 9 136643994 rs602990 T C 5242.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5271,513,0 9 136645079 rs540626 G C 5224.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5253,542,0 9 136804211 rs2073886 G A 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.257;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.702;SOR=0.649 GT:AD:DP:GQ:PL 0/1:56,51:107:99:1238,0,1369 9 136907005 rs467387 G A 3443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.248;SOR=0.677 GT:AD:DP:GQ:PL 0/1:159,153:312:99:3472,0,3712 9 136913355 rs464826 T C 10173.8 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.61;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,312:312:99:10202,936,0 9 137004991 rs28657441 G A 1875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.576;SOR=0.655 GT:AD:DP:GQ:PL 0/1:90,88:178:99:1904,0,2051 9 137005023 rs11556390 C T 2354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.444;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.097;SOR=0.745 GT:AD:DP:GQ:PL 0/1:100,107:207:99:2383,0,2160 9 137007451 rs28562287 A T 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-0.984;SOR=1.127 GT:AD:DP:GQ:PL 0/1:54,62:116:99:1469,0,1257 9 137017126 rs34523253 A G 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-0.262;SOR=0.649 GT:AD:DP:GQ:PL 0/1:89,69:158:99:1473,0,2141 9 137619195 rs3124299 C T 1857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=4.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=0.287;SOR=0.649 GT:AD:DP:GQ:PL 0/1:63,83:146:99:1886,0,1405 9 137630587 rs3128612 T C 504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.778;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=-1.206;SOR=0.617 GT:AD:DP:GQ:PL 0/1:44,19:63:99:533,0,1334 9 137642478 rs12685946 A G 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.532;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-1.214;SOR=0.609 GT:AD:DP:GQ:PL 0/1:64,73:137:99:1828,0,1492 9 137672012 rs3124932 C T 4142.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.88;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.18;ReadPosRankSum=-0.626;SOR=0.952 GT:AD:DP:GQ:PL 1/1:2,145:147:99:4171,391,0 9 137686906 rs4072883 C T 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=2.337;SOR=0.789 GT:AD:DP:GQ:PL 0/1:92,56:148:99:1180,0,2272 9 137686951 rs41310207 G A 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.116;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.98;ReadPosRankSum=1.428;SOR=0.807 GT:AD:DP:GQ:PL 0/1:124,67:191:99:1361,0,3021 9 137686987 rs79481146 A T 1237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.28;ReadPosRankSum=-1.963;SOR=0.669 GT:AD:DP:GQ:PL 0/1:112,58:170:99:1266,0,2745 9 137708934 rs10858282 T G 1550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.603;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=0.369;SOR=0.73 GT:AD:DP:GQ:PL 0/1:80,73:153:99:1579,0,1740 9 137711997 rs2228560 G C 1524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=0.392;SOR=1.084 GT:AD:DP:GQ:PL 0/1:68,67:135:99:1553,0,1600 9 137775139 rs3128624 A G 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-1.068;SOR=0.62 GT:AD:DP:GQ:PL 0/1:72,57:129:99:1244,0,1751 9 137775155 rs4520243 T C 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.282;SOR=0.688 GT:AD:DP:GQ:PL 0/1:77,62:139:99:1415,0,1838 9 137801314 rs2989734 A G 1240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.293;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.736;SOR=0.814 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1269,0,1392 9 137801416 rs2989735 T C 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.142;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-2.644;SOR=0.733 GT:AD:DP:GQ:PL 0/1:86,69:155:99:1748,0,2075 9 137801800 rs1071583 T C 1531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-4.211;SOR=0.779 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1560,0,1995 9 137804360 rs2274845 A G 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.355;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=4.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-1.26;SOR=1.098 GT:AD:DP:GQ:PL 0/1:84,68:152:99:1601,0,2061 9 137982127 rs500461 T C 6318.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.13;QD=30.38;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6347,624,0 9 138236212 rs914397 T G 5181.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5210,491,0 9 138376533 rs61731943 T C 4994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0;DB;DP=357;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.035;SOR=0.818 GT:AD:DP:GQ:PL 0/1:159,198:357:99:5023,0,3963 9 138378856 rs2078266 A G 8922.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8951,849,0 9 138379002 rs1975518 T G 9980.77 PASS AC=2;AF=1;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,336:336:99:10009,1008,0 9 138395969 rs3748199 A G 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.007;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.378;SOR=0.695 GT:AD:DP:GQ:PL 0/1:107,95:202:99:2220,0,2609 9 138439005 rs504061 A C 1102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.22;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.5;MQ=56.09;MQRankSum=-5.738;QD=13.45;ReadPosRankSum=-2.467;SOR=1.011 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,37:82:99:0|1:138438976_G_C:1131,0,1724 9 138439806 rs72766543 C T 2007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.32;ReadPosRankSum=1.308;SOR=0.777 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,54:123:99:0|1:138439806_C_T:2036,0,3516 9 138439809 rs72766544 T C 1975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.131;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.19;ReadPosRankSum=0.813;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,53:122:99:0|1:138439806_C_T:2004,0,3519 9 138440554 rs55695858 G C 3430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.972;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.5;ReadPosRankSum=0.827;SOR=0.605 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,90:196:99:0|1:138440554_G_C:3459,0,4694 9 138440562 rs3178137 C T 3467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.25;ReadPosRankSum=0.824;SOR=0.659 GT:AD:DP:GQ:PGT:PID:PL 0/1:109,92:201:99:0|1:138440554_G_C:3496,0,4742 9 138440624 rs3827835 G C 2010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.361;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.08;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=1.055;SOR=0.786 GT:AD:DP:GQ:PL 0/1:114,85:199:99:2039,0,2816 9 138440641 rs2853652 T C 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.677;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=6.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.117;SOR=1.165 GT:AD:DP:GQ:PL 0/1:100,80:180:99:2037,0,2427 9 138441685 rs112851559 G GC 927.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.555;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=4.223;MLEAC=1;MLEAF=0.5;MQ=53.12;MQRankSum=0.023;QD=5.87;ReadPosRankSum=0.87;SOR=1.083 GT:AD:DP:GQ:PL 0/1:112,46:158:99:965,0,3068 9 138516531 rs7466817 G C 950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.847;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=4.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.02;ReadPosRankSum=0.23;SOR=1.547 GT:AD:DP:GQ:PL 0/1:19,31:50:99:979,0,473 9 138518010 rs1333240 A G 4083.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4112,426,0 9 138523332 rs1333234 C A 609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.074;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=4.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=1.249;SOR=1.258 GT:AD:DP:GQ:PL 0/1:39,30:69:99:638,0,907 9 138586198 rs572335 G A 9897.77 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,321:321:99:9926,963,0 9 138586309 rs484524 A G 6140.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.538 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6169,587,0 9 138586966 rs3119932 G A 13570.8 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.06;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,308:308:99:1|1:138586966_G_A:13599,927,0 9 138586967 rs3119933 C A 13570.8 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.2;SOR=0.739 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,307:307:99:1|1:138586966_G_A:13599,927,0 9 138590928 rs471525 C T 8037.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8066,842,0 9 138591230 rs558113 C T 3621.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3650,339,0 9 138591266 rs559326 A G 4681.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4710,453,0 9 138606581 rs141291153 C CGG 2573.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.8;ReadPosRankSum=-0.761;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,68:130:99:0|1:138606581_C_CGG:2611,0,3960 9 138606586 rs2385007 T C 2603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.18;ReadPosRankSum=-0.868;SOR=0.718 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,67:129:99:0|1:138606581_C_CGG:2632,0,3957 9 138662309 rs10776844 A G 5649.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5678,585,0 9 138669261 rs914428 G A 5310.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5339,555,0 9 138707074 rs3739464 G A 687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.107;SOR=0.737 GT:AD:DP:GQ:PL 0/1:22,30:52:99:716,0,503 9 138707727 rs913342 C G 4637.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4666,477,0 9 138830120 rs112505519 G C 2683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.087;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.89;SOR=0.628 GT:AD:DP:GQ:PL 0/1:144,116:260:99:2712,0,3369 9 138836941 rs140946801 GCCT G 4512.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.987;QD=19.71;ReadPosRankSum=-0.769;SOR=0.7 GT:AD:DP:GQ:PL 0/1:112,117:229:99:4550,0,4564 9 138838140 rs7028495 T C 3285.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3314,347,0 9 138903671 rs9626 A G 4216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.026;SOR=0.688 GT:AD:DP:GQ:PL 0/1:188,175:363:99:4245,0,4850 9 138905136 rs2280486 C T 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-2.298;SOR=0.7 GT:AD:DP:GQ:PL 0/1:59,71:130:99:1656,0,1325 9 139094773 rs2274115 A G 4417.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=1.307 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4446,414,0 9 139118673 rs12380852 T C 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.813;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.166;SOR=0.902 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1144,0,1347 9 139222174 rs28495820 T C 2813.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2842,282,0 9 139235415 rs60980157 C T 4791.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4820,467,0 9 139266405 rs10781499 G A 10245.8 PASS AC=2;AF=1;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,333:333:99:10274,999,0 9 139266496 rs4077515 C T 9394.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,315:315:99:9423,943,0 9 139272058 rs10781507 A G 7030.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7059,687,0 9 139272502 rs3812565 T C 8377.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=33.38;ReadPosRankSum=-1.564;SOR=0.802 GT:AD:DP:GQ:PL 1/1:2,249:251:99:8406,704,0 9 139273402 rs3812567 C T 2946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.382;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=0.662;SOR=0.611 GT:AD:DP:GQ:PL 0/1:146,120:266:99:2975,0,3660 9 139275204 rs3812570 A C 1710.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1739,159,0 9 139275294 rs3812571 G C 1390.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1419,141,0 9 139277994 rs147271628 CGCT C 11112.7 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=44.27;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,251:260:99:11150,757,0 9 139279173 rs10781510 G A 1392.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1421,141,0 9 139289825 rs4266763 A G 5266.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5295,531,0 9 139298593 rs1051957 A G 8162.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8191,830,0 9 139299673 rs3812578 G C 1925.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1954,186,0 9 139301583 rs3087886 T C 5096.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=1.625 GT:AD:DP:GQ:PL 1/1:0,155:155:99:5125,465,0 9 139302015 rs36076555 TAA T,TA 1002.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.47;MQRankSum=0.56;QD=13.74;ReadPosRankSum=1.591;SOR=0.788 GT:AD:DP:GQ:PL 1/2:6,47,20:92:99:1031,111,174,648,0,865 9 139311471 rs3812581 C T 4508.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=1.041 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4537,453,0 9 139312996 rs10870160 C T 1587.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.994 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,51:51:99:1|1:139312972_G_T:1616,153,0 9 139324737 rs33982662 C A 2361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-1.009;SOR=0.728 GT:AD:DP:GQ:PL 0/1:139,109:248:99:2390,0,5486 9 139324740 rs10870182 C T 3139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.766;SOR=0.651 GT:AD:DP:GQ:PL 0/1:106,138:244:99:3168,0,4121 9 139326304 rs10870188 G A 1907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=-0.946;QD=11.56;ReadPosRankSum=0.803;SOR=0.614 GT:AD:DP:GQ:PL 0/1:79,86:165:99:1936,0,2196 9 139327034 rs10870194 A G 2195.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2224,225,0 9 139327439 rs10781542 A G 4937.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4966,456,0 9 139327599 rs71269007 G GCGCCCACCCCTCCAGCCA 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=75.359;MLEAC=1;MLEAF=0.5;MQ=61.53;MQRankSum=6.16;QD=10.11;ReadPosRankSum=1.327;SOR=4.45 GT:AD:DP:GQ:PL 0/1:146,49:195:99:2000,0,9265 9 139328551 rs10870199 T C 764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.257;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.35;ReadPosRankSum=1.748;SOR=0.835 GT:AD:DP:GQ:PL 0/1:67,37:104:99:793,0,1566 9 139333049 rs5901103 GCCCT G 4452.73 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=44.53;SOR=1.681 GT:AD:DP:GQ:PL 1/1:0,100:100:99:4490,301,0 9 139341382 . A G 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.826;ClippingRankSum=0;DP=198;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.951;SOR=0.637 GT:AD:DP:GQ:PL 0/1:100,97:197:99:2389,0,2307 9 139350595 rs17610266 G A 1323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=2.636;SOR=0.641 GT:AD:DP:GQ:PL 0/1:67,58:125:99:1352,0,1606 9 139358059 rs11145753 G A 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.659;SOR=0.733 GT:AD:DP:GQ:PL 0/1:100,100:200:99:2347,0,2600 9 139368953 rs3812594 G A 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.662;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=-0.49;SOR=0.599 GT:AD:DP:GQ:PL 0/1:97,111:208:99:2948,0,2234 9 139369062 rs3812595 C T 2135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=-0.058;SOR=0.637 GT:AD:DP:GQ:PL 0/1:63,81:144:99:2164,0,1607 9 139369091 rs11788702 C T 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=1.706;SOR=0.865 GT:AD:DP:GQ:PL 0/1:86,61:147:99:1418,0,2440 9 139371234 rs10781497 G A 2539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.255;SOR=0.698 GT:AD:DP:GQ:PL 0/1:119,110:229:99:2568,0,3072 9 139371342 rs11999525 G A 3416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.025;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-1.71;SOR=0.758 GT:AD:DP:GQ:PL 0/1:122,132:254:99:3445,0,2946 9 139371405 rs11999532 G C 3576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.104;SOR=0.78 GT:AD:DP:GQ:PL 0/1:125,139:264:99:3605,0,3341 9 139371786 rs6560632 A C 7334.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,222:222:99:7363,666,0 9 139378914 rs34376913 T C 4121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.71;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=0.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.111;SOR=0.667 GT:AD:DP:GQ:PL 0/1:203,163:366:99:4150,0,5163 9 139391636 rs2229974 G A 2702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.247;SOR=0.685 GT:AD:DP:GQ:PL 0/1:125,107:232:99:2731,0,3267 9 139399936 rs376799353 G A 3566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=1.355;SOR=0.845 GT:AD:DP:GQ:PL 0/1:138,147:285:99:3595,0,3470 9 139410424 rs3125006 A G 4088.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4117,441,0 9 139418260 rs4489420 A G 3465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.334;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=0.446;SOR=0.693 GT:AD:DP:GQ:PL 0/1:136,140:276:99:3494,0,3168 9 139562993 rs4880118 C T 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-2.245;SOR=0.527 GT:AD:DP:GQ:PL 0/1:53,60:113:99:1464,0,1344 9 139564474 rs2297537 C G 1644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.943;SOR=0.767 GT:AD:DP:GQ:PL 0/1:52,68:120:99:1673,0,1321 9 139565479 . TGGGG T,TGGG 1828.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.39;QD=42.53;SOR=2.059 GT:AD:DP:GQ:PL 1/2:0,31,12:45:99:1866,425,406,1456,0,1421 9 139616742 rs945384 A G 7602.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7631,744,0 9 139649580 rs879467 G A 7079.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7108,696,0 9 139649934 rs61740585 G A 3134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.706;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.137;SOR=0.69 GT:AD:DP:GQ:PL 0/1:104,125:229:99:3163,0,2801 9 139656670 rs2297722 T C 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.33;ReadPosRankSum=-0.257;SOR=0.969 GT:AD:DP:GQ:PL 0/1:48,34:82:99:711,0,1098 9 139656706 rs2297723 A C 605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.128;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=-0.108;SOR=1.008 GT:AD:DP:GQ:PL 0/1:42,29:71:99:634,0,1006 9 139657834 rs9987876 G C 1128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.24;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.586;SOR=0.672 GT:AD:DP:GQ:PL 0/1:60,49:109:99:1157,0,1475 9 139690840 rs1055995 G A 1022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.379;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=4.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.095;SOR=1.345 GT:AD:DP:GQ:PL 0/1:33,43:76:99:1051,0,757 9 139693596 rs945386 T C 3509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.247;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.75;ReadPosRankSum=2.34;SOR=0.749 GT:AD:DP:GQ:PL 0/1:98,140:238:99:3538,0,2119 9 139694521 rs4546744 T G 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=-0.213;SOR=0.523 GT:AD:DP:GQ:PL 0/1:62,84:146:99:2148,0,1365 9 139694569 rs7859194 A C 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.108;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.05;ReadPosRankSum=0.433;SOR=0.724 GT:AD:DP:GQ:PL 0/1:42,63:105:99:1818,0,1006 9 139694613 rs35342663 C A 1132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.57;ReadPosRankSum=-0.36;SOR=0.327 GT:AD:DP:GQ:PL 0/1:23,38:61:99:1161,0,656 9 139694822 rs57277737 C T 742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-0.936;QD=11.98;ReadPosRankSum=-1.181;SOR=0.484 GT:AD:DP:GQ:PL 0/1:32,30:62:99:771,0,820 9 139700605 rs2811795 T C 4922.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4951,474,0 9 139701108 rs2254143 A C 6224.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6253,576,0 9 139726239 rs2811748 A G 7266.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7295,723,0 9 139731969 rs2811742 C T 4678.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.96;QD=25.71;SOR=2.82 GT:AD:DP:GQ:PL 1/1:0,182:182:99:4707,526,0 9 139732331 rs2811741 G C 8971.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,280:280:99:9000,843,0 9 139733851 rs201053581 C T 4026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.042;SOR=0.847 GT:AD:DP:GQ:PL 0/1:165,167:332:99:4055,0,4112 9 139748483 rs45449193 G A 1759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.914;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.716;SOR=0.721 GT:AD:DP:GQ:PL 0/1:84,70:154:99:1788,0,2453 9 139749067 rs7869864 C T 8442.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8471,852,0 9 139752899 rs2275156 T G 7011.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7040,677,0 9 139836694 rs34391108 C T 3645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=7.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.215;SOR=0.76 GT:AD:DP:GQ:PL 0/1:148,149:297:99:3674,0,3695 9 139839904 rs2071006 T G 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.625;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.31;ReadPosRankSum=-0.172;SOR=0.822 GT:AD:DP:GQ:PL 0/1:72,83:155:99:2246,0,1763 9 139840371 rs201974346 G GC 1224.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.115;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=2.967;SOR=0.495 GT:AD:DP:GQ:PL 0/1:46,51:97:99:1262,0,1110 9 139840471 rs7862602 G T 2041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.886;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.468;SOR=0.829 GT:AD:DP:GQ:PL 0/1:66,84:150:99:2070,0,1446 9 139840543 rs7850844 A G 4436.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.94;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4465,381,0 9 139848688 rs4880175 C T 2362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.723;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=1.155;SOR=0.662 GT:AD:DP:GQ:PL 0/1:80,98:178:99:2391,0,1836 9 139872048 rs4880179 A G 4426.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4455,459,0 9 139875318 rs146717258 C CCATT,CCATTCATT 6320.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.039;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.06;MQRankSum=0;QD=43.29;ReadPosRankSum=0.716;SOR=0.904 GT:AD:DP:GQ:PL 1/2:2,71,73:146:99:6358,2978,2831,2885,0,2784 9 139879170 rs17578859 G A 2465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.114;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=0.257;SOR=0.561 GT:AD:DP:GQ:PL 0/1:89,93:182:99:2494,0,2541 9 139904037 rs7048567 A G 2453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.104;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.791;SOR=0.664 GT:AD:DP:GQ:PL 0/1:127,94:221:99:2482,0,3330 9 139905141 rs112887513 G A 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=0.568;SOR=0.821 GT:AD:DP:GQ:PL 0/1:64,79:143:99:2007,0,1727 9 139906359 rs2271862 G A 3062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.849;SOR=0.722 GT:AD:DP:GQ:PL 0/1:111,121:232:99:3091,0,2882 9 139908265 rs10781531 T C 2207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=5.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-2.44;SOR=0.398 GT:AD:DP:GQ:PL 0/1:73,90:163:99:2236,0,1843 9 139912484 rs908832 A G 7038.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.89;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7067,641,0 9 139913239 rs908828 T G 5913.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.85;SOR=1.408 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5942,539,0 9 139915940 rs80138802 A C 3529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.84;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.712;SOR=0.772 GT:AD:DP:GQ:PL 0/1:160,164:324:99:3558,0,3660 9 139916471 rs142576618 A ATGGCTCAGATGGGGGTG 1755.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.38;QD=40.83;SOR=2.147 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1793,125,0 9 139923265 rs4880189 A G 9250.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=0.951 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9279,956,0 9 139943112 rs17853460 A G 2066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.769;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=6.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.31;ReadPosRankSum=1.303;SOR=0.316 GT:AD:DP:GQ:PL 0/1:59,76:135:99:2095,0,1410 9 139943429 rs7873815 G A 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=9.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.963;SOR=0.229 GT:AD:DP:GQ:PL 0/1:73,63:136:99:1442,0,1929 9 139945363 rs2292925 G A 2627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.262;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=0.07;SOR=0.73 GT:AD:DP:GQ:PL 0/1:139,120:259:99:2656,0,3119 9 139946804 rs2271867 C G 1743.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1772,177,0 9 139964447 rs71483301 G C 5099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.948;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=5.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.83;ReadPosRankSum=0.553;SOR=1.013 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,132:286:99:0|1:139964447_G_C:5128,0,7787 9 139964450 rs71483302 C T 5093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=6.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.33;ReadPosRankSum=-0.124;SOR=1.034 GT:AD:DP:GQ:PGT:PID:PL 0/1:158,136:294:99:0|1:139964447_G_C:5122,0,7838 9 139973820 rs7037849 C T 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.213;SOR=0.531 GT:AD:DP:GQ:PL 0/1:108,96:204:99:2338,0,2785 9 139977195 rs4390039 T C 3603.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3632,354,0 9 139981627 rs968733 A G 7140.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=3.105;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.65;ReadPosRankSum=-0.564;SOR=0.306 GT:AD:DP:GQ:PL 1/1:1,232:233:99:7169,660,0 9 140002989 rs4880091 T C 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.085;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=4.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.967;SOR=1.04 GT:AD:DP:GQ:PL 0/1:82,78:160:99:1888,0,1917 9 140006202 rs13631 G A 3097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.462;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=7.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.434;SOR=1.111 GT:AD:DP:GQ:PL 0/1:121,128:249:99:3126,0,3326 9 140006425 rs10747048 C G 3569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=-0.155;SOR=0.809 GT:AD:DP:GQ:PL 0/1:126,139:265:99:3598,0,3210 9 140008750 rs10747049 G C 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.565;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.5;MQ=61.96;MQRankSum=9.157;QD=11.16;ReadPosRankSum=0.617;SOR=0.643 GT:AD:DP:GQ:PL 0/1:145,105:250:99:2819,0,5587 9 140008769 rs199586193 C G 3711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.165;MLEAC=1;MLEAF=0.5;MQ=61.73;MQRankSum=-8.393;QD=15.03;ReadPosRankSum=-0.344;SOR=0.837 GT:AD:DP:GQ:PL 0/1:103,144:247:99:3740,0,3976 9 140008934 rs11145999 A G 2721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=-1.365;SOR=0.62 GT:AD:DP:GQ:PL 0/1:107,109:216:99:2750,0,2670 9 140055876 rs10747050 G A 1414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.21;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.103;SOR=0.782 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1443,0,1690 9 140064315 rs7019671 C A 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.387;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=4.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.838;SOR=0.457 GT:AD:DP:GQ:PL 0/1:99,93:192:99:2159,0,2860 9 140077639 rs11549105 G A 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=1.481;SOR=0.418 GT:AD:DP:GQ:PL 0/1:60,60:120:99:1383,0,1526 9 140079522 rs11549106 G A 3222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.721;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.883;SOR=0.668 GT:AD:DP:GQ:PL 0/1:124,144:268:99:3251,0,3173 9 140084376 rs11556580 G A 1328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-0.13;SOR=0.756 GT:AD:DP:GQ:PL 0/1:74,60:134:99:1357,0,1771 9 140094605 rs9411313 C A 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.186;SOR=0.622 GT:AD:DP:GQ:PL 0/1:43,44:87:99:1034,0,1114 9 140100224 rs7032361 A G 2552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=1.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.201;SOR=0.811 GT:AD:DP:GQ:PL 0/1:146,107:253:99:2581,0,3832 9 140100317 rs113809617 C G 3468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-0.33;SOR=0.699 GT:AD:DP:GQ:PL 0/1:181,147:328:99:3497,0,4728 9 140110274 rs7390663 T C 7947.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7976,770,0 9 140120396 rs6606566 C T 8637.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8666,847,0 9 140128085 rs28407527 T C 1584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=10.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=0.438;SOR=1.097 GT:AD:DP:GQ:PL 0/1:48,59:107:99:1613,0,1211 9 140130606 rs28542318 A T 9763.77 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,320:320:99:9792,958,0 9 140130882 rs28591989 A C 2003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=-1.911;SOR=0.783 GT:AD:DP:GQ:PL 0/1:50,79:129:99:2032,0,1176 9 140139757 rs9775264 G A 7976.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8005,791,0 9 140147094 rs71387813 C CCT 5612.73 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=44.9;SOR=1.411 GT:AD:DP:GQ:PL 1/1:0,125:125:99:5650,379,0 9 140147152 rs28376526 C G 5552.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=30.51;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5581,546,0 9 140167022 rs3204123 G A 4850.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4879,504,0 9 140243844 rs28545754 C T 3260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.769;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.807;SOR=0.636 GT:AD:DP:GQ:PL 0/1:133,131:264:99:3289,0,3758 9 140247143 rs7020732 T G 3076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.046;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-2.12;SOR=0.611 GT:AD:DP:GQ:PL 0/1:137,133:270:99:3105,0,3145 9 140250818 rs7389423 C T 623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.346;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.52;ReadPosRankSum=0.91;SOR=0.952 GT:AD:DP:GQ:PL 0/1:55,28:83:99:652,0,1425 9 140262426 rs11533158 C T 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.86;ReadPosRankSum=0.279;SOR=0.814 GT:AD:DP:GQ:PL 0/1:97,53:150:99:1057,0,2454 9 140267490 rs143312119 G A 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.151;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=-0.072;SOR=0.879 GT:AD:DP:GQ:PL 0/1:128,83:211:99:1849,0,3028 9 140277826 rs13291830 C T 956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.25;ReadPosRankSum=0.049;SOR=0.663 GT:AD:DP:GQ:PL 0/1:101,52:153:99:985,0,2378 9 140317999 rs112864733 C G 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.532;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.096;SOR=0.629 GT:AD:DP:GQ:PL 0/1:102,82:184:99:2054,0,2542 9 140320792 rs72765154 G C 1017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.777;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.238;QD=8.7;ReadPosRankSum=0.6;SOR=0.548 GT:AD:DP:GQ:PL 0/1:70,47:117:99:1046,0,1653 9 140328077 rs35138580 C T 1854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.01;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=6.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=1.099;SOR=1.12 GT:AD:DP:GQ:PL 0/1:106,78:184:99:1883,0,2537 9 140330976 rs13297080 T C 5652.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5681,519,0 9 140332478 rs6606582 A G 6580.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.173 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6609,644,0 9 140356374 rs4962240 C A 2147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.733;SOR=0.979 GT:AD:DP:GQ:PL 0/1:77,90:167:99:2176,0,1848 9 140356422 rs28452008 G C 2911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.372;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.109;SOR=0.677 GT:AD:DP:GQ:PL 0/1:111,110:221:99:2940,0,2725 9 140357848 rs2275781 G C 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.82;SOR=0.441 GT:AD:DP:GQ:PL 0/1:80,76:156:99:1695,0,1820 9 140357972 rs1891627 A G 3573.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3602,366,0 9 140358581 rs4962237 C T 2337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-0.765;SOR=0.797 GT:AD:DP:GQ:PL 0/1:160,116:276:99:2366,0,3881 9 140374861 rs1891630 A G 8497.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.964;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.79;ReadPosRankSum=-1.262;SOR=0.935 GT:AD:DP:GQ:PL 1/1:2,274:276:99:8526,778,0 9 140389613 rs13283256 C T 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.732;SOR=0.532 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1129,0,1299 9 140637804 rs34385417 CT C 429.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=6.931;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.202;QD=4.09;ReadPosRankSum=-0.512;SOR=0.317 GT:AD:DP:GQ:PL 0/1:76,29:130:99:467,0,1522 9 140777299 rs71238527 G T 5236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=5.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=0.244;SOR=0.873 GT:AD:DP:GQ:PGT:PID:PL 0/1:207,140:347:99:0|1:140777299_G_T:5265,0,8334 9 140777306 rs4422842 C G 5244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.954;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.47;ReadPosRankSum=1.168;SOR=0.813 GT:AD:DP:GQ:PGT:PID:PL 0/1:201,138:339:99:0|1:140777299_G_T:5273,0,8222 9 140870488 rs41277869 A T 563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.333;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=-1.284;SOR=0.901 GT:AD:DP:GQ:PL 0/1:39,26:65:99:592,0,838 9 140943642 rs41302681 G T 781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.96;SOR=0.527 GT:AD:DP:GQ:PL 0/1:28,34:62:99:810,0,675 9 141008876 rs2229948 C T 2858.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.03;SOR=1 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2887,306,0 9 141015351 rs2278972 A G 5077.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5106,515,0 9 141016262 rs2278973 T G 6309.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.39;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6338,567,0 10 93603 rs6560827 C T 1886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.792;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.5;MQ=42.78;MQRankSum=-2.183;QD=10.09;ReadPosRankSum=-0.703;SOR=0.709 GT:AD:DP:GQ:PL 0/1:110,77:187:99:1915,0,2945 10 93945 rs4431953 G A 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.02;MQRankSum=-3.161;QD=7.13;ReadPosRankSum=0.466;SOR=0.663 GT:AD:DP:GQ:PL 0/1:156,80:236:99:1712,0,4162 10 94026 rs10904032 G A 1328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=51.58;MQRankSum=-6.302;QD=8.36;ReadPosRankSum=0.533;SOR=0.97 GT:AD:DP:GQ:PL 0/1:100,59:159:99:1357,0,2713 10 94545 rs10904047 C T 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.105;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.85;MLEAC=1;MLEAF=0.5;MQ=52.45;MQRankSum=-1.967;QD=13.43;ReadPosRankSum=-0.342;SOR=0.96 GT:AD:DP:GQ:PL 0/1:75,84:159:99:2163,0,1668 10 94870 rs11251919 A G 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.629;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=14.12;MLEAC=1;MLEAF=0.5;MQ=57.9;MQRankSum=-5.859;QD=9.76;ReadPosRankSum=1.158;SOR=2.777 GT:AD:DP:GQ:PGT:PID:PL 0/1:48,20:68:99:0|1:94870_A_G:692,0,2354 10 94872 rs11251920 A C 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.24;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=14.072;MLEAC=1;MLEAF=0.5;MQ=57.93;MQRankSum=-5.912;QD=9.62;ReadPosRankSum=1.519;SOR=2.717 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,20:69:99:0|1:94870_A_G:692,0,2354 10 285479 rs10655220 G GTGT,GTGTT 1655.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-2.1;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=3.774;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.83;MQRankSum=0;QD=28.06;ReadPosRankSum=-0.979;SOR=0.822 GT:AD:DP:GQ:PL 1/2:1,36,22:62:99:1693,607,459,807,0,718 10 292927 rs2303990 C A 2800.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.29;ReadPosRankSum=2.769;SOR=0.44 GT:AD:DP:GQ:PL 1/1:4,95:99:99:2829,274,0 10 294953 rs1017361 A G 5646.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5675,528,0 10 329191 rs371065533 GC G 4615.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.508;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.311;QD=21.17;ReadPosRankSum=1.306;SOR=0.901 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,118:218:99:0|1:329188_G_T:4653,0,3869 10 394714 rs4880610 G A 5036.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.233 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5065,515,0 10 395266 rs4880611 T C 5680.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5709,576,0 10 429977 rs10904083 G A 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=8.261;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1.319;QD=10.23;ReadPosRankSum=-1.281;SOR=1.115 GT:AD:DP:GQ:PL 0/1:150,131:281:99:2902,0,3299 10 445061 rs6560837 C T 4359.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.13;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4388,464,0 10 459940 rs4881274 G A 4716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.341;ClippingRankSum=0;DB;DP=403;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=1.811;SOR=0.811 GT:AD:DP:GQ:PL 0/1:187,215:402:99:4745,0,4393 10 468748 rs4881290 C T 5922.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5951,591,0 10 910225 rs35968821 A G 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.152;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-2.604;SOR=0.651 GT:AD:DP:GQ:PL 0/1:40,33:73:99:947,0,968 10 1046712 rs2306409 G A 4192.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4221,423,0 10 1230968 rs2271275 C T 3355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.85;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.2;SOR=0.625 GT:AD:DP:GQ:PL 0/1:122,144:266:99:3384,0,2874 10 1245893 rs1983028 A C,T 5634.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=25.85;SOR=1.493 GT:AD:DP:GQ:PL 1/2:0,119,99:218:99:5663,2375,2019,3288,0,2998 10 1779349 rs3750684 G A 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=1.336;SOR=0.532 GT:AD:DP:GQ:PL 0/1:75,90:165:99:2048,0,1829 10 3143643 rs4881080 A C 4695.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4724,474,0 10 3149402 rs10903967 A G 1721.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=1.217 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1750,177,0 10 3155620 rs1052309 A G 4224.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.001 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4253,417,0 10 3180227 rs6901 T C 1860.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1889,189,0 10 3187924 rs3758631 T C 1972.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2001,201,0 10 3189380 rs3740607 C T 664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=1.277;SOR=0.693 GT:AD:DP:GQ:PL 0/1:27,31:58:99:693,0,663 10 3190166 rs59486411 C A 862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.094;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=0.208;SOR=0.993 GT:AD:DP:GQ:PL 0/1:31,34:65:99:891,0,755 10 3190265 rs4881111 A G 1123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.232;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-1.088;SOR=0.998 GT:AD:DP:GQ:PL 0/1:63,46:109:99:1152,0,1473 10 3190499 rs61837966 A T 1371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.939;SOR=0.831 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1400,0,1590 10 3191823 rs2388556 C T 1144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.18;ReadPosRankSum=0.616;SOR=0.726 GT:AD:DP:GQ:PL 0/1:86,54:140:99:1173,0,2194 10 3200292 rs3182535 G A 2629.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2658,276,0 10 3201097 rs3814594 T C 3569.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.25 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3598,342,0 10 3202065 rs4242746 T C 2422.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2451,252,0 10 3202140 rs4242747 C T 1717.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1746,168,0 10 3206027 rs4609511 A G 2093.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2122,221,0 10 3208557 rs12359035 A G 2982.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=29.24;SOR=1.212 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3011,306,0 10 3208581 rs58131139 G GA 1612.73 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=32.91;SOR=2.655 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1650,143,0 10 3208583 rs58280179 A AGAGGAATGGCACGCTAGGGAAGGC 1700.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=34.71;SOR=2.655 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1729,149,0 10 5009100 rs201721705 C G 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.5;MQ=56.66;MQRankSum=-5.986;QD=9.86;ReadPosRankSum=0.758;SOR=0.569 GT:AD:DP:GQ:PL 0/1:48,44:92:99:935,0,1223 10 5010572 rs1138600 A G 881.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.96;QD=33.91;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,26:26:78:910,78,0 10 5011006 rs113645163 T G 3266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.669;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.184;SOR=0.846 GT:AD:DP:GQ:PL 0/1:125,134:259:99:3295,0,2885 10 5014878 rs377451501 A G 121.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=10.241;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=36.268;MLEAC=1;MLEAF=0.5;MQ=44.21;MQRankSum=-8.64;QD=0.36;ReadPosRankSum=-2.209;SOR=3.255 GT:AD:DP:GQ:PL 0/1:314,28:342:99:150,0,7415 10 5018132 rs201420087 A G 123.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.12;QD=30.76;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:12:1|1:5018132_A_G:151,12,0 10 5037696 rs199804594 G C 141.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=6.545;MLEAC=1;MLEAF=0.5;MQ=43.49;MQRankSum=-3.413;QD=0.69;ReadPosRankSum=1.791;SOR=1.335 GT:AD:DP:GQ:PL 0/1:178,28:206:99:170,0,4698 10 5043821 rs2854482 A T 3288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.979;SOR=0.704 GT:AD:DP:GQ:PL 0/1:151,145:296:99:3317,0,3499 10 5136651 rs12529 C G 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.394;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.156;SOR=0.713 GT:AD:DP:GQ:PL 0/1:72,52:124:99:1339,0,1765 10 5138607 rs7741 G A 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.694;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.476;SOR=0.775 GT:AD:DP:GQ:PL 0/1:95,97:192:99:2680,0,2534 10 5139685 rs12387 G A 4680.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4709,468,0 10 5144657 rs11252941 C G 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.8;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=50.31;MQRankSum=0.179;QD=9.59;ReadPosRankSum=-1.628;SOR=0.847 GT:AD:DP:GQ:PL 0/1:57,39:96:99:949,0,1654 10 5149703 rs3209896 G A 772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.195;SOR=0.614 GT:AD:DP:GQ:PL 0/1:28,37:65:99:801,0,647 10 5255025 rs4880718 A G 11208.8 PASS AC=2;AF=1;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,385:385:99:11237,1154,0 10 5435918 rs7097775 G A 7381.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7410,713,0 10 5436260 rs7910290 A G 6612.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6641,667,0 10 5437365 rs11253156 A G 7712.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7741,782,0 10 5471200 rs4604777 C T 2503.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.36;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2532,283,0 10 5495218 rs4567355 T C 1671.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1700,162,0 10 5498248 rs4242790 G T 3159.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3188,321,0 10 5781628 rs2254067 T G 4127.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=29.48;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4156,419,0 10 5781969 rs2797486 A T 4989.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5018,471,0 10 5784151 rs45575338 A G 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.489;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=1.386;SOR=0.847 GT:AD:DP:GQ:PL 0/1:87,68:155:99:1519,0,1947 10 5784509 rs2797488 G A 625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=2.765;SOR=0.473 GT:AD:DP:GQ:PL 0/1:30,28:58:99:654,0,754 10 5788608 rs2797491 G C 5732.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5761,567,0 10 5790420 rs2669142 T C 5281.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5310,506,0 10 5799613 rs2275774 A G 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-1.568;SOR=0.569 GT:AD:DP:GQ:PL 0/1:49,64:113:99:1555,0,1137 10 5804531 rs2797501 G A 1087.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1116,104,0 10 5808086 rs1129614 G A 1027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.103;SOR=0.631 GT:AD:DP:GQ:PL 0/1:47,41:88:99:1056,0,1167 10 5920121 rs1052420 T C 2650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.925;SOR=0.785 GT:AD:DP:GQ:PL 0/1:107,115:222:99:2679,0,2556 10 5925971 rs631947 C A 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.924;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.143;SOR=0.627 GT:AD:DP:GQ:PL 0/1:71,74:145:99:1837,0,1625 10 5978411 rs646406 T C 1585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.234;SOR=0.627 GT:AD:DP:GQ:PL 0/1:84,68:152:99:1614,0,2217 10 5995052 rs2229135 C T 954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-1.705;SOR=0.445 GT:AD:DP:GQ:PL 0/1:39,42:81:99:983,0,950 10 6002368 rs2228059 T G 4611.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4640,468,0 10 6063674 rs942200 T C 2323.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.264 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2352,243,0 10 6066200 rs11256369 C G 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.88;ReadPosRankSum=-2.658;SOR=0.77 GT:AD:DP:GQ:PL 0/1:22,48:70:99:1350,0,494 10 6156118 rs10795823 T C 1435.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.09;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1464,159,0 10 6533625 rs527611 T A 2494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=1.579;SOR=0.571 GT:AD:DP:GQ:PL 0/1:112,106:218:99:2523,0,2717 10 7285632 rs2248474 A G 62.28 PASS AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.76;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,3:3:9:90,9,0 10 7605067 rs3824658 C T 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.116;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.425;SOR=1.019 GT:AD:DP:GQ:PL 0/1:70,67:137:99:1720,0,1623 10 7605077 rs61199416 TC T 5168.73 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.19;SOR=1.195 GT:AD:DP:GQ:PL 1/1:0,139:139:99:5206,418,0 10 7605101 rs10795551 A G 4227.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4256,426,0 10 7618501 rs2275068 A G 8153.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8182,832,0 10 7618686 rs2275069 T G 6214.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6243,596,0 10 7618993 rs10458802 G A 5284.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.28;SOR=1.746 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,125:125:99:1|1:7618993_G_A:5313,379,0 10 7622047 rs12256183 A G 1158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.722;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=4.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=-0.672;SOR=1.275 GT:AD:DP:GQ:PL 0/1:36,43:79:99:1187,0,878 10 7683873 rs41382649 A T 1018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.126;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.762;SOR=0.839 GT:AD:DP:GQ:PL 0/1:54,44:98:99:1047,0,1263 10 7763661 rs7075296 A G 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.069 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4315,423,0 10 7774317 rs41290291 T C 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=4.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-1.465;SOR=0.444 GT:AD:DP:GQ:PL 0/1:87,78:165:99:1838,0,2035 10 7808086 rs3736968 T C 651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-0.069;SOR=0.607 GT:AD:DP:GQ:PL 0/1:24,30:54:99:680,0,583 10 7866266 . TTCA T 1892.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.6;ReadPosRankSum=0.801;SOR=0.907 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,51:114:99:0|1:7866266_TTCA_T:1930,0,2411 10 7866268 rs7070208 C G 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.51;ReadPosRankSum=-0.941;SOR=0.517 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1682,0,1931 10 7866269 . A AGG 1892.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.53;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.6;ReadPosRankSum=0.932;SOR=0.907 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,51:114:99:0|1:7866266_TTCA_T:1930,0,2411 10 8006266 rs41290305 A G 2695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.15;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=8.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.254;SOR=0.781 GT:AD:DP:GQ:PL 0/1:120,105:225:99:2724,0,2989 10 8006798 rs4747647 A G 3293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.859;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.777;SOR=0.794 GT:AD:DP:GQ:PL 0/1:124,133:257:99:3322,0,2966 10 8007559 rs10795583 G C 2287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.394;SOR=0.649 GT:AD:DP:GQ:PL 0/1:112,103:215:99:2316,0,2675 10 8007560 rs1244229 T C 7499.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.23;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,207:209:99:7528,624,0 10 11299735 rs2277212 A T 1449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-2.151;SOR=0.982 GT:AD:DP:GQ:PL 0/1:65,68:133:99:1478,0,1518 10 11330525 rs2277214 G A 1849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.796;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=-1.006;SOR=0.912 GT:AD:DP:GQ:PL 0/1:130,83:213:99:1878,0,3050 10 11356093 rs5783207 T TTTTG 6425.73 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.9;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,140:140:99:6463,433,0 10 11356160 rs2246449 C T 4850.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4879,512,0 10 11784633 rs11558855 C T 3557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.465;SOR=0.817 GT:AD:DP:GQ:PL 0/1:151,152:303:99:3586,0,3615 10 11789382 rs4750090 G A 3763.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3792,386,0 10 11789405 rs4750091 G A 3755.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3784,390,0 10 11797436 rs7899215 T C 6338.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6367,611,0 10 11797467 rs7910140 G A 6304.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6333,664,0 10 11797619 rs902892 C G 4433.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4462,426,0 10 11805354 rs12258196 A G 62.74 PASS AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:11805339_C_T:90,6,0 10 11805357 rs10906011 G A 62.74 PASS AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:11805339_C_T:90,6,0 10 12009320 rs117856064 T A 733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.151;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.54;SOR=0.43 GT:AD:DP:GQ:PL 0/1:27,31:58:99:762,0,596 10 12043790 rs11595168 T G 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.366;SOR=0.587 GT:AD:DP:GQ:PL 0/1:59,49:108:99:1129,0,1512 10 12071535 rs12411326 C G 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.56;ReadPosRankSum=2.737;SOR=0.639 GT:AD:DP:GQ:PL 0/1:50,58:108:99:1709,0,1418 10 12111090 rs1279138 T C 7222.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=1.508 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7251,684,0 10 12131081 rs3740015 T G 5613.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.283 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5642,542,0 10 12139884 rs35537424 C T 2801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.341;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.257;SOR=0.616 GT:AD:DP:GQ:PL 0/1:110,126:236:99:2830,0,2785 10 12143105 rs2062988 C G 4221.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4250,437,0 10 12148259 rs1701472 A C 4840.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.922;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.03;ReadPosRankSum=1.586;SOR=0.442 GT:AD:DP:GQ:PL 1/1:1,155:156:99:4869,458,0 10 12148286 rs1615510 T C 4987.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5016,480,0 10 12149939 rs1722462 C T 3168.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3197,335,0 10 12199893 rs77831225 G A 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.882;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=1.771;SOR=0.534 GT:AD:DP:GQ:PL 0/1:54,46:100:99:1123,0,1252 10 12238325 rs141093124 TGGGA T 2984.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=3.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.86;ReadPosRankSum=0.158;SOR=0.953 GT:AD:DP:GQ:PL 0/1:98,79:177:99:3022,0,5091 10 12292344 rs10951 A G 1884.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1913,174,0 10 12940455 rs10906249 A G 8488.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8517,867,0 10 13151224 rs2234968 G A 1955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=1.085;SOR=0.634 GT:AD:DP:GQ:PL 0/1:79,88:167:99:1984,0,1918 10 13158262 rs2244380 C T 1478.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1507,153,0 10 13166076 rs523747 A G 2809.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2838,290,0 10 13214427 rs17152897 A G 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.858;SOR=0.602 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1214,0,1169 10 13230950 rs2296222 C T 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.816;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.684;SOR=0.759 GT:AD:DP:GQ:PL 0/1:75,91:166:99:2031,0,1915 10 13275553 rs3829925 T G 5467.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5496,552,0 10 13275643 rs4750328 G A 2967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=-0.468;SOR=0.562 GT:AD:DP:GQ:PL 0/1:87,121:208:99:2996,0,2032 10 13337588 rs1747682 G A 1137.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1166,120,0 10 13375906 rs10752297 T C 3331.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3360,336,0 10 13534851 rs2251555 A G 5253.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5282,542,0 10 13541724 rs113234105 T TAAAAC 6343.73 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=45.97;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,138:138:99:6381,430,0 10 13653653 rs1135102 A G 3512.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3541,336,0 10 13838604 rs3740121 A G 531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.012;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.043;SOR=0.536 GT:AD:DP:GQ:PL 0/1:27,24:51:99:560,0,633 10 15008493 rs4750568 A C 3431.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3460,348,0 10 15106441 rs10906818 A G 2126.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2155,213,0 10 15154974 rs7072269 A G 3213.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.705 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3242,303,0 10 15256194 rs3814165 G A 3027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.532;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=1.397;SOR=0.606 GT:AD:DP:GQ:PL 0/1:100,120:220:99:3056,0,2239 10 15413071 rs192904368 G A 1428.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.755 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1457,147,0 10 15573050 rs1041135 A G 1776.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1805,179,0 10 15729923 rs1954181 C T 1420.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.86;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1449,153,0 10 15761770 rs11575600 TCTCC T 2131.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.003;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.92;ReadPosRankSum=-0.189;SOR=0.871 GT:AD:DP:GQ:PL 0/1:69,57:126:99:2169,0,2981 10 15902303 rs2297882 A G 786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.005;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=5.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-0.013;SOR=1.362 GT:AD:DP:GQ:PL 0/1:47,34:81:99:815,0,1065 10 16556710 rs7909832 T C 2467.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2496,257,0 10 16737165 rs72451149 G GAA 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.69;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=19.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=3.912;SOR=0.754 GT:AD:DP:GQ:PL 0/1:42,40:90:99:964,0,1626 10 16737166 rs3837313 G A 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=9.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.83;ReadPosRankSum=1.395;SOR=0.416 GT:AD:DP:GQ:PL 0/1:33,52:86:99:2054,0,1580 10 16794623 rs10445 C T 1356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.61;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=2.048;SOR=0.756 GT:AD:DP:GQ:PL 0/1:40,64:104:99:1385,0,851 10 16796919 rs1049632 C A 959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.156;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=1.768;SOR=0.764 GT:AD:DP:GQ:PL 0/1:47,40:87:99:988,0,1124 10 16824096 . G GA 67.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.3;ReadPosRankSum=0.178;SOR=0.892 GT:AD:DP:GQ:PL 0/1:43,9:58:99:105,0,954 10 16882518 rs703064 T C 3564.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.42;QD=28.52;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3593,375,0 10 16943371 rs2796835 G C 5133.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5162,523,0 10 16967401 rs1276712 C T 5008.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=29.29;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5037,512,0 10 16979661 rs1801234 T C 1950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.14;ReadPosRankSum=0.179;SOR=0.883 GT:AD:DP:GQ:PL 0/1:59,79:138:99:1979,0,1399 10 16979714 rs41289305 T C 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.14;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=-1.31;SOR=0.572 GT:AD:DP:GQ:PL 0/1:60,91:151:99:2047,0,1327 10 17024503 rs1801231 G A 3007.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3036,303,0 10 17024615 rs1801229 A T 4279.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4308,447,0 10 17110595 rs10795440 G A 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.798;SOR=0.691 GT:AD:DP:GQ:PL 0/1:38,45:83:99:980,0,863 10 17113563 rs1801225 C T 1324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-0.43;SOR=0.65 GT:AD:DP:GQ:PL 0/1:73,62:135:99:1353,0,1720 10 17147521 rs1801224 G T 2229.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2258,240,0 10 17156151 rs1801222 A G 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.146;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.57;SOR=0.545 GT:AD:DP:GQ:PL 0/1:95,66:161:99:1655,0,2183 10 17171265 rs2281648 G C 2691.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2720,279,0 10 17204187 rs11254413 G A 2052.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=28.51;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2081,216,0 10 17216556 rs2273734 C T 1955.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1984,195,0 10 17365044 rs7085750 T G 874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.473;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=2.12;SOR=0.95 GT:AD:DP:GQ:PL 0/1:33,40:73:99:903,0,672 10 17365146 rs150777747 G A 1071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.076;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.771;QD=13.74;ReadPosRankSum=0.327;SOR=0.633 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,31:78:99:0|1:17365146_G_A:1100,0,1751 10 17365169 rs12354751 A G 1038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.305;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.594;QD=16.75;ReadPosRankSum=-0.488;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 0/1:34,28:62:99:0|1:17365146_G_A:1067,0,1460 10 17659131 rs11254692 C A 14308.8 PASS AC=2;AF=1;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.03;SOR=0.763 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,325:325:99:1|1:17659131_C_A:14337,1011,0 10 17659149 rs7895850 C T 14472.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.32;SOR=0.778 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,342:342:99:1|1:17659131_C_A:14501,1035,0 10 18242304 rs691112 T C 6526.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6555,648,0 10 18254606 rs691513 C A 3136.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3165,309,0 10 18266989 rs2478568 G A 3237.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3266,347,0 10 18270422 rs1926739 G A 1088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-1.24;SOR=0.79 GT:AD:DP:GQ:PL 0/1:56,42:98:99:1117,0,1488 10 18789724 rs4485000 T G 980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.812;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=1.021;SOR=0.518 GT:AD:DP:GQ:PL 0/1:47,41:88:99:1009,0,1114 10 18828191 rs143060134 C T 1651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.986;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.109;SOR=0.813 GT:AD:DP:GQ:PL 0/1:75,73:148:99:1680,0,1655 10 18828635 rs58225473 T G 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.661;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-0.561;SOR=0.806 GT:AD:DP:GQ:PL 0/1:65,49:114:99:1155,0,1506 10 18828663 rs4747352 G T 3489.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.66;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3518,264,0 10 18828669 rs67831174 GT G 636.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.44;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=6.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.147;SOR=0.224 GT:AD:DP:GQ:PL 0/1:16,35:67:99:674,0,163 10 18840919 rs12767546 T A 314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.3;ReadPosRankSum=1.579;SOR=0.33 GT:AD:DP:GQ:PL 0/1:32,18:50:99:343,0,879 10 18937579 rs45468894 A AAAG 411.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=0.063;SOR=0.512 GT:AD:DP:GQ:PL 0/1:32,13:45:99:449,0,1387 10 19417208 rs78076387 G A 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.705;SOR=0.758 GT:AD:DP:GQ:PL 0/1:70,62:132:99:1441,0,1581 10 19498278 rs2358355 G A 4525.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4554,455,0 10 19569100 rs75389448 G T 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.17;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.636;SOR=0.605 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1345,0,1494 10 19571941 rs2499066 A G 1227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=6.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.832;SOR=0.319 GT:AD:DP:GQ:PL 0/1:60,53:113:99:1256,0,1442 10 19620407 rs7100382 A C 4730.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4759,483,0 10 19620439 rs7100403 A G 4239.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4268,425,0 10 19636779 rs76551926 C T 1507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.946;SOR=0.868 GT:AD:DP:GQ:PL 0/1:91,69:160:99:1536,0,2314 10 19636869 rs1609746 G T 4740.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4769,465,0 10 19641035 rs10827306 T C 5005.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5034,491,0 10 19641231 rs7092566 A G 5351.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=42.81;SOR=1.262 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,125:125:99:1|1:19641231_A_G:5380,376,0 10 19641239 rs10616221 CTG C 5193.73 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=43.64;SOR=1.297 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,119:119:99:1|1:19641231_A_G:5231,358,0 10 19678497 rs10763975 G A 3879.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3908,377,0 10 19780463 rs16918863 C A 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=7.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=1.582;SOR=0.395 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1521,0,1851 10 19780543 rs10827499 C T 1701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.862;SOR=0.692 GT:AD:DP:GQ:PL 0/1:65,73:138:99:1730,0,1626 10 19787418 rs12256835 T G 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.134;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.37;ReadPosRankSum=-0.119;SOR=0.728 GT:AD:DP:GQ:PL 0/1:51,65:116:99:1695,0,1269 10 19884264 rs10827628 G A 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=6.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.053;SOR=0.573 GT:AD:DP:GQ:PL 0/1:107,86:193:99:1931,0,2761 10 19896830 rs7909976 C A 6116.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.07 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6145,609,0 10 19904870 rs10580913 ATT A 1332.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.65;ReadPosRankSum=0.291;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,34:50:99:0|1:19904870_ATT_A:1370,0,892 10 20357183 rs7072650 A G 1605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-1.305;SOR=0.473 GT:AD:DP:GQ:PL 0/1:64,72:136:99:1634,0,1381 10 20436838 rs4626974 G C 1062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.178;SOR=0.586 GT:AD:DP:GQ:PL 0/1:49,46:95:99:1091,0,1100 10 20506418 rs3817405 G A 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=5.465;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.408;SOR=1.033 GT:AD:DP:GQ:PL 0/1:110,118:228:99:2869,0,2620 10 20506525 . CTTTTT C 430.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.348;QD=53.84;ReadPosRankSum=0.204;SOR=0.247 GT:AD:DP:GQ:PL 0/1:1,7:34:99:432,0,340 10 20534333 rs2778979 A G 6521.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6550,666,0 10 21108377 rs1006363 C T 2113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.848;SOR=0.672 GT:AD:DP:GQ:PL 0/1:96,98:195:99:2142,0,2137 10 21141469 rs703089 T C 2648.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2677,266,0 10 21177156 rs67288319 GA G 1238.73 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=27.53;SOR=1.038 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,45:45:99:1|1:21177143_G_GA:1276,135,0 10 21414892 rs625223 C G 4612.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4641,443,0 10 21415006 rs11591355 T C 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.228;SOR=0.818 GT:AD:DP:GQ:PL 0/1:75,63:138:99:1500,0,1862 10 21435340 rs72102767 ACACT A 2551.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.485;QD=22.58;ReadPosRankSum=0.864;SOR=0.582 GT:AD:DP:GQ:PL 0/1:47,66:113:99:2589,0,2134 10 21461410 rs11413698 G GA 615.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=5.176;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.123;SOR=0.538 GT:AD:DP:GQ:PL 0/1:24,35:65:99:653,0,425 10 21805466 rs112207161 C CCCTCCT 9800.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.88;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=2.738;MLEAC=2;MLEAF=1;MQ=61.42;MQRankSum=0.465;QD=41.18;ReadPosRankSum=2.023;SOR=0.5 GT:AD:DP:GQ:PL 1/1:10,228:254:99:9838,241,0 10 21827796 rs1802669 G A 3087.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3116,327,0 10 22498209 rs2243897 A G 3210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-1.142;SOR=0.641 GT:AD:DP:GQ:PL 0/1:146,136:282:99:3239,0,3470 10 22498468 rs838759 C T 3217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.735;SOR=0.652 GT:AD:DP:GQ:PL 0/1:138,137:275:99:3246,0,3373 10 22498484 rs3059425 C CAGA 5161.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.78;ReadPosRankSum=1.141;SOR=0.706 GT:AD:DP:GQ:PL 0/1:128,133:261:99:5199,0,5308 10 22498749 rs2478476 A T 6506.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6535,615,0 10 22830719 rs943192 G C 4071.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.32;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4100,389,0 10 22839628 rs2230469 T C 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=1.579;SOR=0.675 GT:AD:DP:GQ:PL 0/1:29,41:70:99:949,0,615 10 23297301 rs11817610 C T 1486.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=1.287 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1515,159,0 10 23408278 rs7427 C T 5145.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.207 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5174,495,0 10 23482635 rs7918487 T C 1123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.975;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.882;SOR=0.59 GT:AD:DP:GQ:PL 0/1:64,41:105:99:1152,0,1790 10 23633566 rs2036917 C A 2605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.865;SOR=0.733 GT:AD:DP:GQ:PL 0/1:114,114:228:99:2634,0,2711 10 24721946 rs2274831 A C 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.912;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.865;SOR=0.942 GT:AD:DP:GQ:PL 0/1:59,49:108:99:1196,0,1429 10 24833137 rs2250411 C T 1684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.007;SOR=0.721 GT:AD:DP:GQ:PL 0/1:86,76:162:99:1713,0,2173 10 24873369 rs1127893 C G 2138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.353;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.5;MQ=56.46;MQRankSum=-6.764;QD=9.95;ReadPosRankSum=0.608;SOR=0.75 GT:AD:DP:GQ:PL 0/1:124,91:215:99:2167,0,3047 10 24879281 rs10734053 A G 5919.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5948,581,0 10 24908686 rs3748222 T C 2563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.79;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.74;MQRankSum=-0.62;QD=14.48;ReadPosRankSum=0.075;SOR=0.667 GT:AD:DP:GQ:PL 0/1:82,95:177:99:2592,0,2047 10 25273311 rs5783912 G GA 723.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.906;QD=12.06;ReadPosRankSum=-0.542;SOR=0.966 GT:AD:DP:GQ:PL 0/1:27,33:96:99:761,0,411 10 25312689 rs4748997 A G 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.446;SOR=0.78 GT:AD:DP:GQ:PL 0/1:78,73:151:99:1839,0,2123 10 25312895 rs34929144 C A 2536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.08;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.185;SOR=0.729 GT:AD:DP:GQ:PL 0/1:100,104:204:99:2565,0,2641 10 25313818 rs7086282 C T 2251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.936;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-2.079;SOR=0.731 GT:AD:DP:GQ:PL 0/1:71,91:162:99:2280,0,1887 10 25701341 rs2480345 C G 3467.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3496,336,0 10 26241025 rs11014875 T A 1293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=2.473;SOR=0.744 GT:AD:DP:GQ:PL 0/1:41,52:93:99:1322,0,996 10 26286066 rs139987960 TTA T 843.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=3.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.07;ReadPosRankSum=0.355;SOR=0.33 GT:AD:DP:GQ:PL 0/1:31,25:56:99:881,0,1150 10 26286159 rs12257119 G T 1099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.811;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.737;SOR=0.625 GT:AD:DP:GQ:PL 0/1:47,47:94:99:1128,0,1090 10 26355906 rs3824700 G A 1075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.524;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-1.439;SOR=0.899 GT:AD:DP:GQ:PL 0/1:58,47:105:99:1104,0,1376 10 26355992 rs3824699 A G 1041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.425;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=2.225;SOR=0.796 GT:AD:DP:GQ:PL 0/1:62,43:105:99:1070,0,1457 10 26356014 rs3824698 C T 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.815;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.48;ReadPosRankSum=0.08;SOR=1.159 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,44:98:99:0|1:26356014_C_T:1643,0,2246 10 26356015 rs3824697 A G 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.452;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=3.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17;ReadPosRankSum=0.273;SOR=1.14 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,42:95:99:0|1:26356014_C_T:1643,0,2246 10 26357747 rs35379457 C T 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=1.766;SOR=0.601 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,31:84:99:0|1:26357747_C_T:1175,0,2517 10 26357748 rs3817420 G A 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.086;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=1.337;SOR=0.527 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,32:85:99:0|1:26357747_C_T:1175,0,2517 10 26357820 rs3817419 C T 294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.359;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.02;ReadPosRankSum=-1.648;SOR=0.593 GT:AD:DP:GQ:PL 0/1:34,15:49:99:323,0,882 10 26385578 rs41279908 G A 959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=-1.639;SOR=0.648 GT:AD:DP:GQ:PL 0/1:27,38:65:99:988,0,686 10 26446312 rs3758449 G A 1906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=0.161;SOR=0.872 GT:AD:DP:GQ:PL 0/1:106,82:188:99:1935,0,2697 10 26457637 rs16926628 T C 1264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.406;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=1.417;SOR=0.995 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1293,0,1247 10 26465792 rs17739680 T C 1111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=-0.836;SOR=0.76 GT:AD:DP:GQ:PL 0/1:70,54:124:99:1140,0,1617 10 26825151 rs71521689 GA G 375.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=2.325;QD=5.15;ReadPosRankSum=1.014;SOR=0.743 GT:AD:DP:GQ:PL 0/1:45,28:89:99:413,0,995 10 26993597 rs34296355 AT A 284.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.24;ReadPosRankSum=-0.695;SOR=0.467 GT:AD:DP:GQ:PL 0/1:8,12:20:99:322,0,200 10 27303605 rs2274741 A T 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.056;SOR=0.653 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1079,0,1030 10 27317778 rs72807627 T C 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.537;SOR=0.61 GT:AD:DP:GQ:PL 0/1:44,38:82:99:865,0,983 10 27317840 rs10829163 C T 824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=1.336;SOR=0.417 GT:AD:DP:GQ:PL 0/1:41,40:81:99:853,0,1045 10 27326999 rs7096505 T C 514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.509;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=3.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=0.718;SOR=1.22 GT:AD:DP:GQ:PL 0/1:36,23:59:99:543,0,918 10 27381349 rs2297145 T C 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.381;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.578;SOR=0.613 GT:AD:DP:GQ:PL 0/1:46,44:90:99:949,0,979 10 27389197 rs7897309 T C 3644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.125;SOR=0.705 GT:AD:DP:GQ:PL 0/1:123,143:266:99:3673,0,3014 10 27401056 rs11015538 C T 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.067;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.048;SOR=0.937 GT:AD:DP:GQ:PL 0/1:67,53:120:99:1242,0,1577 10 27423744 rs2275752 T C 1589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.498;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.831;SOR=0.744 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1618,0,1509 10 27434483 rs2274634 G A 1134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.285;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=-1.702;SOR=0.645 GT:AD:DP:GQ:PL 0/1:72,51:123:99:1163,0,1982 10 27437964 rs11538750 T C 664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=1.674;SOR=0.456 GT:AD:DP:GQ:PL 0/1:33,30:63:99:693,0,820 10 27444344 rs7907988 T G 2245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.096;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=3.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.196;SOR=0.466 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2274,0,2483 10 27687775 rs1638630 T C 1460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.499;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.144;SOR=0.782 GT:AD:DP:GQ:PL 0/1:79,61:140:99:1489,0,1858 10 27702169 rs6482625 C T 2543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.193;SOR=0.495 GT:AD:DP:GQ:PL 0/1:95,111:206:99:2572,0,2365 10 27702688 rs7087552 C T 3480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=-1.812;SOR=0.837 GT:AD:DP:GQ:PL 0/1:99,127:226:99:3509,0,2586 10 27702725 rs6482626 A G 3823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=1.766;SOR=0.696 GT:AD:DP:GQ:PL 0/1:125,152:277:99:3852,0,3086 10 27964470 rs2253230 G A 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=1.596;SOR=0.866 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1409,0,1183 10 28228865 rs7893462 A G 979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.169;SOR=1.074 GT:AD:DP:GQ:PL 0/1:39,44:83:99:1008,0,888 10 28378613 rs11006853 G A 956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.111;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=1.157;SOR=0.699 GT:AD:DP:GQ:PL 0/1:57,43:100:99:985,0,1421 10 28378758 rs2997211 T C 1952.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.55;SOR=2.08 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1981,179,0 10 28409614 rs7903192 C G 1318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.184;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=2.314;SOR=0.695 GT:AD:DP:GQ:PL 0/1:43,51:94:99:1347,0,1014 10 28970487 rs56281747 C T 1523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=1.729;SOR=0.556 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1552,0,1626 10 29169046 rs199740171 AT A 118.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=7.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.09;ReadPosRankSum=1.383;SOR=0.274 GT:AD:DP:GQ:PL 0/1:90,19:127:99:156,0,2101 10 29578084 rs17851935 A G 2007.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.83;QD=28.28;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2036,213,0 10 29581440 rs3818550 C T 3051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.49;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=4.217;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=1.454;QD=11.39;ReadPosRankSum=1.695;SOR=0.481 GT:AD:DP:GQ:PL 0/1:131,137:268:99:3080,0,3185 10 29581493 rs3818551 A C 4343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-0.041;QD=10.75;ReadPosRankSum=1.203;SOR=0.639 GT:AD:DP:GQ:PL 0/1:205,199:404:99:4372,0,4583 10 29784003 rs7904048 G A 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.5;MQ=46.53;MQRankSum=0.999;QD=16.71;ReadPosRankSum=-0.324;SOR=0.827 GT:AD:DP:GQ:PL 0/1:30,46:76:99:1298,0,792 10 29784072 rs2368406 G C 392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.6;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=50.3;MQRankSum=-1.405;QD=4.85;ReadPosRankSum=-0.361;SOR=0.535 GT:AD:DP:GQ:PL 0/1:60,21:81:99:421,0,1575 10 29784114 rs6481601 T C 2153.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.41;QD=29.1;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2182,222,0 10 29812602 rs7070678 G T 2833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-1.205;SOR=0.698 GT:AD:DP:GQ:PL 0/1:131,119:250:99:2862,0,3163 10 29821089 rs17756919 C T 2252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.19;SOR=0.603 GT:AD:DP:GQ:PL 0/1:94,96:190:99:2281,0,2328 10 29821523 rs1328323 T C 2585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.453;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=1.068;SOR=0.903 GT:AD:DP:GQ:PL 0/1:150,105:255:99:2614,0,3714 10 29822032 rs1247696 C T 6700.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6729,675,0 10 29822159 rs7076239 T C 3310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.976;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=3.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-0.405;SOR=0.942 GT:AD:DP:GQ:PL 0/1:144,135:279:99:3339,0,3527 10 29839798 rs17834991 A G 4370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.349;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.584;SOR=0.722 GT:AD:DP:GQ:PL 0/1:172,184:356:99:4399,0,3887 10 29839864 rs1270874 A C 4270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=1.123;SOR=0.597 GT:AD:DP:GQ:PL 0/1:140,171:311:99:4299,0,3218 10 30306804 rs2478839 G A 1139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.307;SOR=0.683 GT:AD:DP:GQ:PL 0/1:61,54:115:99:1168,0,1348 10 30316072 rs3739998 C G 3104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=1.62;SOR=0.741 GT:AD:DP:GQ:PL 0/1:117,124:241:99:3133,0,3174 10 30316208 rs2185724 T C 2799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.122;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.181;SOR=0.712 GT:AD:DP:GQ:PL 0/1:106,113:219:99:2828,0,2623 10 30316872 rs3739996 T C 3452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=0.199;SOR=0.565 GT:AD:DP:GQ:PL 0/1:114,136:250:99:3481,0,2980 10 30317073 rs9337951 G A 2885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.283;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.03;ReadPosRankSum=1.012;SOR=0.769 GT:AD:DP:GQ:PL 0/1:78,114:192:99:2914,0,2015 10 30317826 rs7920682 A G 3721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=3.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.24;ReadPosRankSum=-0.372;SOR=0.77 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,97:204:99:0|1:30317826_A_G:3750,0,5337 10 30317838 rs7920686 A G 3761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.742;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.91;ReadPosRankSum=-0.411;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,102:210:99:0|1:30317826_A_G:3790,0,5413 10 30317949 rs2478835 C T 3182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=4.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=1.889;SOR=0.761 GT:AD:DP:GQ:PL 0/1:114,125:239:99:3211,0,3050 10 30728101 rs1042058 T C 1197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.847;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.855;SOR=0.743 GT:AD:DP:GQ:PL 0/1:78,52:130:99:1226,0,1922 10 30901756 rs9954 G A 734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.69;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.646;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.348;QD=7;ReadPosRankSum=0.421;SOR=0.848 GT:AD:DP:GQ:PL 0/1:67,38:105:99:763,0,1647 10 30918549 rs201069868 G C 2096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.5;MQ=56.86;MQRankSum=-4.649;QD=6.41;ReadPosRankSum=1.454;SOR=0.604 GT:AD:DP:GQ:PL 0/1:214,113:327:99:2125,0,5272 10 30918597 rs74551644 T C 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.378;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=7.844;MLEAC=1;MLEAF=0.5;MQ=56.72;MQRankSum=-5.779;QD=4.71;ReadPosRankSum=-3.161;SOR=1.157 GT:AD:DP:GQ:PL 0/1:210,68:278:99:1339,0,5431 10 31803516 rs220060 G A 2308.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.432 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2337,228,0 10 32311969 rs176924 A G 2343.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=1.31 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2372,240,0 10 32635834 rs11597888 G A 2928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.087;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.316;SOR=0.742 GT:AD:DP:GQ:PL 0/1:110,122:232:99:2957,0,3048 10 32742256 rs2490505 T G 2241.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=1.164 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2270,222,0 10 32745248 rs56391924 A C 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.065;SOR=0.579 GT:AD:DP:GQ:PL 0/1:64,62:126:99:1463,0,1517 10 32832214 rs2990986 G A 684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=0.543;SOR=0.704 GT:AD:DP:GQ:PL 0/1:56,31:87:99:713,0,1550 10 32856746 rs12268559 A C 3052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.704;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=1.462;SOR=0.753 GT:AD:DP:GQ:PL 0/1:130,132:262:99:3081,0,2924 10 32872120 rs12244832 C T 1549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.548;SOR=0.814 GT:AD:DP:GQ:PL 0/1:68,68:136:99:1578,0,1721 10 32974969 rs1762526 A G 1799.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1828,180,0 10 33018351 rs1414548 G C 2846.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2875,283,0 10 33123774 rs11009107 T C 317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.3;ReadPosRankSum=1.209;SOR=0.52 GT:AD:DP:GQ:PL 0/1:40,20:60:99:346,0,943 10 33123824 rs4448627 G C 1553.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.37;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1582,144,0 10 33137515 rs2488294 T G 681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.384;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.21;ReadPosRankSum=1.933;SOR=0.882 GT:AD:DP:GQ:PL 0/1:50,33:83:99:710,0,1157 10 33137551 rs2504011 T C 766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.029;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=-1.554;SOR=0.797 GT:AD:DP:GQ:PL 0/1:50,37:87:99:795,0,1161 10 33143396 rs1418538 G A 1558.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1587,162,0 10 33190567 rs2153875 C A 596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.189;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=4.974;MLEAC=1;MLEAF=0.5;MQ=58.74;MQRankSum=-1.688;QD=9.04;ReadPosRankSum=-1.89;SOR=1.382 GT:AD:DP:GQ:PL 0/1:38,28:66:99:625,0,849 10 33200468 rs17851763 G A 2562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=58.89;MQRankSum=-2.237;QD=13.01;ReadPosRankSum=3.176;SOR=0.778 GT:AD:DP:GQ:PL 0/1:88,109:197:99:2591,0,2062 10 33209266 rs2230396 G T 3065.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=1.037 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3094,296,0 10 33469181 rs1048804 A G 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.102;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.64;ReadPosRankSum=0.279;SOR=0.929 GT:AD:DP:GQ:PL 0/1:121,67:188:99:1464,0,2923 10 33510663 rs2229935 G A 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.65;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.611;SOR=0.706 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1263,0,1573 10 33510768 rs2229934 G A 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=1.493;SOR=0.965 GT:AD:DP:GQ:PL 0/1:57,49:106:99:1107,0,1499 10 33552696 rs7079053 A G 1448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.315;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=-0.636;SOR=0.647 GT:AD:DP:GQ:PL 0/1:43,55:98:99:1477,0,914 10 34620220 rs3781128 C T 3602.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3631,371,0 10 34688287 rs2796011 G A 2285.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2314,236,0 10 35302705 rs12830 C T 373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.719;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=6.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-0.415;SOR=1.582 GT:AD:DP:GQ:PL 0/1:25,16:41:99:402,0,557 10 35314130 rs58779572 TA T 196.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.716;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=0.029;SOR=0.527 GT:AD:DP:GQ:PL 0/1:10,14:24:99:234,0,172 10 35338699 rs7900480 G A 881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.279;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.667;SOR=0.927 GT:AD:DP:GQ:PL 0/1:29,38:67:99:910,0,592 10 35772402 rs3802509 G A 429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.034;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.11;ReadPosRankSum=-0.181;SOR=0.638 GT:AD:DP:GQ:PL 0/1:33,20:53:99:458,0,724 10 35896957 rs595652 G A 2678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.018;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.066;SOR=0.765 GT:AD:DP:GQ:PL 0/1:104,114:218:99:2707,0,2769 10 35929091 rs145782862 G A 1409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.357;SOR=0.743 GT:AD:DP:GQ:PL 0/1:47,56:103:99:1438,0,1206 10 37447358 rs1200881 T G 1396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.385;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=-1.639;SOR=0.82 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1425,0,1251 10 37478440 rs201628233 G T 854.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.12;MQRankSum=-2.732;QD=7.63;ReadPosRankSum=1.54;SOR=0.755 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,44:112:99:0|1:37478440_G_T:883,0,1493 10 37478445 rs143202734 G A 3866.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.05;QD=34.22;SOR=0.822 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,113:113:99:1|1:37478440_G_T:3895,340,0 10 37488689 rs1209750 G C 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=0.179;SOR=0.551 GT:AD:DP:GQ:PL 0/1:37,30:67:99:646,0,907 10 37505099 rs34285151 C A 1062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=1.241;SOR=0.496 GT:AD:DP:GQ:PL 0/1:39,45:84:99:1091,0,973 10 37505159 rs34552277 G A 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.73;ReadPosRankSum=1.358;SOR=0.462 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,68:129:99:0|1:37505159_G_A:2574,0,2925 10 37505179 rs57914746 T C 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.306;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=5.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.53;ReadPosRankSum=-0.051;SOR=0.378 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,72:138:99:0|1:37505159_G_A:2723,0,3007 10 37508450 rs1148259 A C 3379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.681;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=-0.161;SOR=0.585 GT:AD:DP:GQ:PL 0/1:92,145:237:99:3408,0,2202 10 37890955 rs2180706 G A 525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.57;ReadPosRankSum=1.726;SOR=0.957 GT:AD:DP:GQ:PL 0/1:53,27:80:99:554,0,1458 10 38344700 rs2505232 C G 3175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=1.197;QD=12.81;ReadPosRankSum=0.381;SOR=0.665 GT:AD:DP:GQ:PL 0/1:127,121:248:99:3204,0,3597 10 38344779 . CAG C 4320.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.598;ClippingRankSum=0;DP=229;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=1.14;QD=19.12;ReadPosRankSum=-0.466;SOR=0.669 GT:AD:DP:GQ:PL 0/1:110,116:226:99:4358,0,4351 10 38407519 rs176889 A G 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-1.849;QD=13.54;ReadPosRankSum=-2.564;SOR=0.716 GT:AD:DP:GQ:PL 0/1:72,90:162:99:2221,0,1896 10 43089965 rs210280 G A 4749.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=31.25;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4778,455,0 10 43281089 rs7074877 T C 6910.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6939,711,0 10 43289407 rs7921071 G A 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.257;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=5.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=0.196;SOR=1.135 GT:AD:DP:GQ:PL 0/1:88,66:154:99:1576,0,2215 10 43312807 rs11239786 C T 1069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.201;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=5.232;MLEAC=1;MLEAF=0.5;MQ=57.57;MQRankSum=-0.13;QD=11.14;ReadPosRankSum=-0.047;SOR=1.223 GT:AD:DP:GQ:PL 0/1:53,43:96:99:1098,0,1365 10 43317499 rs111556852 G A 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.382;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.75;MQRankSum=1.099;QD=11.26;ReadPosRankSum=1.227;SOR=0.725 GT:AD:DP:GQ:PL 0/1:46,42:88:99:1019,0,1012 10 43319197 rs12764004 G A 2350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.017;SOR=0.636 GT:AD:DP:GQ:PL 0/1:112,104:216:99:2379,0,2663 10 43595968 rs1800858 A G 2832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.222;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.109;QD=10.15;ReadPosRankSum=0.791;SOR=0.837 GT:AD:DP:GQ:PL 0/1:153,126:279:99:2861,0,3578 10 43606687 rs1800860 A G 2288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.586;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-1.855;SOR=0.979 GT:AD:DP:GQ:PL 0/1:118,92:210:99:2317,0,2660 10 43613843 rs1800861 G T 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=0.857;SOR=0.8 GT:AD:DP:GQ:PL 0/1:70,49:119:99:1181,0,1713 10 43622217 rs2075912 T C 2438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.908;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=1.025;SOR=0.713 GT:AD:DP:GQ:PL 0/1:91,92:183:99:2467,0,2116 10 43671378 rs61579799 GT G 715.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.823;SOR=1.193 GT:AD:DP:GQ:PL 0/1:19,41:65:99:753,0,375 10 43691691 rs1254968 C T 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.897;SOR=0.77 GT:AD:DP:GQ:PL 0/1:60,79:139:99:1856,0,1513 10 43694363 rs35825252 C CA 1263.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.75;ReadPosRankSum=-0.616;SOR=0.523 GT:AD:DP:GQ:PL 0/1:26,38:64:99:1301,0,796 10 44052903 rs2230661 A C 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.294;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.284;SOR=0.75 GT:AD:DP:GQ:PL 0/1:108,78:186:99:1838,0,2535 10 44053013 rs2230660 G C 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=11.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.301;SOR=0.514 GT:AD:DP:GQ:PL 0/1:93,66:159:99:1846,0,2698 10 44788826 rs58189594 C T 2955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=1.182;SOR=0.734 GT:AD:DP:GQ:PL 0/1:120,132:252:99:2984,0,2814 10 44868465 rs12258838 C T 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-2.109;SOR=0.905 GT:AD:DP:GQ:PL 0/1:112,86:198:99:2113,0,2977 10 44880376 rs17540465 C T 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.972;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=5.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.21;ReadPosRankSum=0.156;SOR=1.222 GT:AD:DP:GQ:PL 0/1:49,59:108:99:1779,0,1246 10 45473317 rs3740094 C T 3660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=6.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-0.268;SOR=0.928 GT:AD:DP:GQ:PL 0/1:159,143:302:99:3689,0,4135 10 45496120 rs12269028 A T 2165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=4.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=2.116;SOR=0.427 GT:AD:DP:GQ:PL 0/1:61,89:150:99:2194,0,1470 10 45869713 rs4987106 C G 5517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.74;ReadPosRankSum=-0.611;SOR=0.551 GT:AD:DP:GQ:PGT:PID:PL 0/1:127,139:266:99:0|1:45869669_C_T:5546,0,12311 10 45869748 rs4987105 C T 5740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=5.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.58;ReadPosRankSum=1.763;SOR=0.478 GT:AD:DP:GQ:PGT:PID:PL 0/1:147,162:309:99:0|1:45869669_C_T:5769,0,11443 10 45869895 rs111916157 A G 3430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.615;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.74;ReadPosRankSum=1.044;SOR=0.509 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,93:205:99:0|1:45869895_A_G:3459,0,4647 10 45953767 rs7908745 A G 1402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.18;SOR=0.851 GT:AD:DP:GQ:PL 0/1:77,61:138:99:1431,0,1827 10 45958856 rs2291428 G C 3018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.012;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.248;SOR=0.744 GT:AD:DP:GQ:PL 0/1:149,119:268:99:3047,0,3966 10 45958881 rs2291429 A C 2655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.545;SOR=0.722 GT:AD:DP:GQ:PL 0/1:148,113:261:99:2684,0,3763 10 46245557 rs190175456 T C 1638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.69;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.4;MQRankSum=-0.119;QD=8.49;ReadPosRankSum=0.093;SOR=0.7 GT:AD:DP:GQ:PL 0/1:112,81:193:99:1667,0,2456 10 46246300 rs117298225 A G 5451.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.58;QD=27.67;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5480,590,0 10 46321904 rs202104169 C T 2562.77 SNP_FS_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.359;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=106.713;MLEAC=1;MLEAF=0.5;MQ=32.8;MQRankSum=2.687;QD=10.21;ReadPosRankSum=-2.313;SOR=3.827 GT:AD:DP:GQ:PL 0/1:145,106:251:99:2591,0,2819 10 46342570 rs199591580 C T 710.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.925;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.59;MQRankSum=-7.157;QD=6.07;ReadPosRankSum=0.163;SOR=0.619 GT:AD:DP:GQ:PL 0/1:74,43:117:99:739,0,1894 10 46961964 rs138447966 G A 2752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.569;ClippingRankSum=0;DB;DP=870;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.51;MQRankSum=-2.625;QD=3.17;ReadPosRankSum=0.592;SOR=0.712 GT:AD:DP:GQ:PL 0/1:685,184:869:99:2781,0,18689 10 46963951 rs55945664 G A 3592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0;DB;DP=458;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=57.29;MQRankSum=-1.121;QD=7.88;ReadPosRankSum=-0.508;SOR=0.644 GT:AD:DP:GQ:PL 0/1:283,173:456:99:3621,0,7216 10 46965018 rs3127785 C G 5248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.76;ClippingRankSum=0;DB;DP=584;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=1.421;SOR=0.69 GT:AD:DP:GQ:PL 0/1:353,230:583:99:5277,0,9288 10 46965727 rs1889849 G A 4204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.994;ClippingRankSum=0;DB;DP=523;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.04;ReadPosRankSum=2.189;SOR=0.788 GT:AD:DP:GQ:PL 0/1:335,188:523:99:4233,0,8715 10 46965887 rs368272154 T TG 3621.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DB;DP=427;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=2.096;QD=9.41;ReadPosRankSum=0.753;SOR=0.577 GT:AD:DP:GQ:PL 0/1:228,157:385:99:3659,0,5775 10 46967672 rs2152530 C T 5419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.031;ClippingRankSum=0;DB;DP=627;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.64;ReadPosRankSum=1.754;SOR=0.648 GT:AD:DP:GQ:PL 0/1:387,240:627:99:5448,0,9671 10 46969312 rs55894256 G A 1330.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.682;ClippingRankSum=0;DB;DP=679;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.96;ReadPosRankSum=-0.323;SOR=0.775 GT:AD:DP:GQ:PL 0/1:558,120:678:99:1359,0,15221 10 46970573 rs6587511 C G 2874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0;DB;DP=821;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.51;ReadPosRankSum=0.688;SOR=0.684 GT:AD:DP:GQ:PL 0/1:654,165:819:99:2903,0,18764 10 46970654 rs915449 C A 6900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.06;ClippingRankSum=0;DB;DP=850;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.14;ReadPosRankSum=1.296;SOR=0.663 GT:AD:DP:GQ:PL 0/1:538,310:848:99:6929,0,13661 10 46970792 rs915450 G C 8883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.581;ClippingRankSum=0;DB;DP=799;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.359;SOR=0.784 GT:AD:DP:GQ:PL 0/1:508,291:799:99:8912,0,13360 10 46970796 rs112001859 G A 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.56;ClippingRankSum=0;DB;DP=794;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.68;ReadPosRankSum=0.521;SOR=0.789 GT:AD:DP:GQ:PL 0/1:647,147:794:99:2158,0,31650 10 46998894 rs3127817 G A 3904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.436;SOR=0.612 GT:AD:DP:GQ:PL 0/1:211,172:383:99:3933,0,5279 10 46998995 rs4926045 C G 11327.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.811;ClippingRankSum=0;DB;DP=520;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.83;ReadPosRankSum=0.433;SOR=0.64 GT:AD:DP:GQ:PL 0/1:207,312:519:99:11356,0,7315 10 46998999 rs3127818 G A 7408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=519;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=-0.681;SOR=0.675 GT:AD:DP:GQ:PGT:PID:PL 0/1:309,209:518:99:0|1:46998999_G_A:7437,0,12614 10 46999019 rs3127819 G A 7680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0;DB;DP=521;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=-0.169;SOR=0.778 GT:AD:DP:GQ:PGT:PID:PL 0/1:310,210:520:99:0|1:46998999_G_A:7709,0,12451 10 46999030 rs4925989 C T 10849.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=526;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.67;ReadPosRankSum=0.135;SOR=0.667 GT:AD:DP:GQ:PL 0/1:215,310:525:99:10878,0,7938 10 46999066 rs376362242 G A 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.061;ClippingRankSum=0;DB;DP=520;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.03;ReadPosRankSum=2.556;SOR=0.73 GT:AD:DP:GQ:PL 0/1:423,96:519:99:1601,0,15045 10 46999151 rs3127820 T C 6403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DB;DP=515;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-2.409;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:319,196:515:99:0|1:46999151_T_C:6432,0,11970 10 46999178 rs7090312 A C 11547.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.112;ClippingRankSum=0;DB;DP=455;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.38;ReadPosRankSum=-0.134;SOR=0.742 GT:AD:DP:GQ:PL 0/1:162,293:455:99:11576,0,6201 10 46999189 rs3127678 C T 5658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=1.149;SOR=0.577 GT:AD:DP:GQ:PGT:PID:PL 0/1:285,154:439:99:0|1:46999151_T_C:5687,0,11824 10 46999190 rs3127679 A G 19624.8 PASS AC=2;AF=1;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.81;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,438:438:99:19653,1339,0 10 46999198 rs3127680 G T 5548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=1.42;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:282,153:435:99:0|1:46999151_T_C:5577,0,11410 10 46999465 rs3127682 A G 4369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.255;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=4.475;QD=10.74;ReadPosRankSum=0.119;SOR=0.593 GT:AD:DP:GQ:PL 0/1:216,191:407:99:4398,0,5620 10 46999484 rs11204658 G T 5636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.894;ClippingRankSum=0;DB;DP=403;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=-5.64;QD=14.02;ReadPosRankSum=-1.269;SOR=0.737 GT:AD:DP:GQ:PL 0/1:183,219:402:99:5665,0,4289 10 46999577 rs11204659 G T 8721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0;DB;DP=397;ExcessHet=3.0103;FS=3.825;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=-6.003;QD=22.02;ReadPosRankSum=1.947;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,232:396:99:0|1:46999577_G_T:8750,0,5786 10 46999591 rs112620425 C CATGAGGGAG 4888.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.1;ClippingRankSum=0;DB;DP=374;ExcessHet=3.0103;FS=0.4;MLEAC=1;MLEAF=0.5;MQ=60.69;MQRankSum=6.65;QD=13.93;ReadPosRankSum=1.304;SOR=0.691 GT:AD:DP:GQ:PL 0/1:222,129:351:99:4926,0,9268 10 46999596 rs7895979 G A 8989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=3.889;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=-6.126;QD=23.17;ReadPosRankSum=0.723;SOR=0.614 GT:AD:DP:GQ:PGT:PID:PL 0/1:157,231:388:99:0|1:46999577_G_T:9018,0,5981 10 46999604 rs3127683 A G 16053.8 PASS AC=2;AF=1;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=44.47;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,361:361:99:16082,1102,0 10 46999732 rs4579877 G A 5882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1.982;QD=14.74;ReadPosRankSum=-0.485;SOR=0.696 GT:AD:DP:GQ:PL 0/1:173,226:399:99:5911,0,4453 10 46999747 rs3127821 T C 4331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.407;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.874;SOR=0.767 GT:AD:DP:GQ:PL 0/1:225,162:387:99:4360,0,5566 10 46999863 rs4445576 C G 4893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.081;ClippingRankSum=0;DB;DP=464;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.365;SOR=0.807 GT:AD:DP:GQ:PL 0/1:277,187:464:99:4922,0,7717 10 46999922 rs4926046 G T 1444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.952;ClippingRankSum=0;DB;DP=549;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.63;ReadPosRankSum=-1.145;SOR=0.904 GT:AD:DP:GQ:PL 0/1:439,110:549:99:1473,0,12350 10 47000004 rs3127822 T C 18393.8 PASS AC=2;AF=1;AN=2;DB;DP=592;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,592:592:99:18422,1774,0 10 47000071 rs4244614 G A 7114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.691;ClippingRankSum=0;DB;DP=495;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.37;ReadPosRankSum=-0.655;SOR=0.672 GT:AD:DP:GQ:PL 0/1:223,272:495:99:7143,0,8305 10 47000079 rs3127823 T C 6568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0;DB;DP=475;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=-0.206;SOR=0.701 GT:AD:DP:GQ:PL 0/1:258,217:475:99:6597,0,10289 10 47000146 rs3127684 C T 6168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.715;ClippingRankSum=0;DB;DP=538;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.436;SOR=0.758 GT:AD:DP:GQ:PL 0/1:283,255:538:99:6197,0,7182 10 47000188 rs3127824 A G 21186.8 PASS AC=2;AF=1;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.6;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,535:535:99:21215,1635,0 10 47000239 rs7912299 C T 5375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0;DB;DP=476;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-0.217;SOR=0.698 GT:AD:DP:GQ:PL 0/1:244,231:475:99:5404,0,6005 10 47087078 rs2229967 G T 624.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.758;ClippingRankSum=0;DB;DP=486;ExcessHet=3.0103;FS=3.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.29;ReadPosRankSum=0.415;SOR=1.024 GT:AD:DP:GQ:PL 0/1:417,67:486:99:653,0,11392 10 47087371 rs1048156 G A 4275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.268;ClippingRankSum=0;DB;DP=492;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=1.765;SOR=0.57 GT:AD:DP:GQ:PL 0/1:313,177:490:99:4304,0,8296 10 47087474 rs1129838 C T 11394.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0;DB;DP=599;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.15;ReadPosRankSum=-0.958;SOR=0.622 GT:AD:DP:GQ:PGT:PID:PL 0/1:219,376:595:99:0|1:47087474_C_T:11423,0,4828 10 47087501 rs3824733 C T 2529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0;DB;DP=628;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.04;ReadPosRankSum=-0.671;SOR=0.729 GT:AD:DP:GQ:PGT:PID:PL 0/1:475,151:626:99:0|1:47087474_C_T:2558,0,18683 10 47087608 rs1936339 T C 16053.8 PASS AC=2;AF=1;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,510:510:99:16082,1530,0 10 47087680 rs1048157 C T 6293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=410;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.39;ReadPosRankSum=-1.792;SOR=0.573 GT:AD:DP:GQ:PL 0/1:171,238:409:99:6322,0,4203 10 47087731 rs1048158 C T 5791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=5.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.12;ReadPosRankSum=-0.272;SOR=0.93 GT:AD:DP:GQ:PL 0/1:166,217:383:99:5820,0,4206 10 47087830 rs1129839 G A 6279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=409;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=0.499;SOR=0.661 GT:AD:DP:GQ:PL 0/1:153,254:407:99:6308,0,3248 10 47158904 rs151312129 C T 2004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.014;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=4.343;MLEAC=1;MLEAF=0.5;MQ=43.64;MQRankSum=-6.923;QD=8.08;ReadPosRankSum=0.015;SOR=0.478 GT:AD:DP:GQ:PL 0/1:143,105:248:99:2033,0,3638 10 47667508 rs34058224 C A 1243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=-3.259;QD=6.01;ReadPosRankSum=-0.394;SOR=0.539 GT:AD:DP:GQ:PL 0/1:140,67:207:99:1272,0,3571 10 47668707 rs4409768 T C 2721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.602;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=1.847;SOR=0.644 GT:AD:DP:GQ:PL 0/1:84,106:190:99:2750,0,2074 10 47668720 rs72790466 A G 1584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.523;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-0.16;SOR=0.7 GT:AD:DP:GQ:PL 0/1:102,66:168:99:1613,0,4034 10 47668721 rs4570521 G A 2512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.567;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=0.225;SOR=0.686 GT:AD:DP:GQ:PL 0/1:66,102:168:99:2541,0,2417 10 47669277 rs61845226 C G 3431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.946;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=14.958;MLEAC=1;MLEAF=0.5;MQ=57.43;MQRankSum=-5.629;QD=14.86;ReadPosRankSum=0.651;SOR=1.431 GT:AD:DP:GQ:PL 0/1:103,128:231:99:3460,0,2590 10 47678021 rs7100993 C T 584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.389;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.22;ReadPosRankSum=2.306;SOR=1.022 GT:AD:DP:GQ:PL 0/1:54,27:81:99:613,0,1432 10 47701275 rs10906952 G A 581.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=47.156;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.76;ReadPosRankSum=-2.509;SOR=2.933 GT:AD:DP:GQ:PL 0/1:275,55:330:99:610,0,7103 10 47701302 rs7091749 G C 575.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.081;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=33.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.82;ReadPosRankSum=-1.805;SOR=2.493 GT:AD:DP:GQ:PL 0/1:266,51:317:99:604,0,6809 10 47756065 rs77623921 C T 10125.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.086;ClippingRankSum=0;DB;DP=602;ExcessHet=3.0103;FS=6.464;MLEAC=1;MLEAF=0.5;MQ=51.22;MQRankSum=10.4;QD=16.85;ReadPosRankSum=0.911;SOR=0.966 GT:AD:DP:GQ:PL 0/1:197,404:602:99:10154,0,3370 10 47915898 rs183064568 A G 508.77 PASS AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.25;QD=24.23;SOR=2.2 GT:AD:DP:GQ:PL 1/1:0,21:21:62:537,62,0 10 47942094 rs187138221 T C 179.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.84;QD=25.69;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,7:7:21:208,21,0 10 47946953 rs200028787 G A 402.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.84;QD=33.56;SOR=5.136 GT:AD:DP:GQ:PL 1/1:0,12:12:36:431,36,0 10 49382926 rs144837285 G T 189.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.87;QD=27.11;SOR=2.584 GT:AD:DP:GQ:PL 1/1:0,7:7:21:218,21,0 10 49383976 rs200957845 T C 414.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=32.33;MQRankSum=2.014;QD=6.19;ReadPosRankSum=0.349;SOR=0.834 GT:AD:DP:GQ:PL 0/1:42,25:67:99:443,0,930 10 49388901 rs200503523 C T 309.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=1.58;MLEAC=1;MLEAF=0.5;MQ=25;MQRankSum=0;QD=11.91;ReadPosRankSum=0.348;SOR=0.796 GT:AD:DP:GQ:PL 0/1:12,14:26:99:338,0,279 10 49389016 rs199919944 T C 674.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.5;MQ=33.53;MQRankSum=-2.964;QD=10.38;ReadPosRankSum=1.218;SOR=0.42 GT:AD:DP:GQ:PL 0/1:30,35:65:99:703,0,661 10 49420008 rs1864345 T C 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.02;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=1.504;SOR=0.843 GT:AD:DP:GQ:PL 0/1:85,75:160:99:1881,0,1982 10 49420066 rs17011019 A G 2277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.148;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.763;SOR=0.602 GT:AD:DP:GQ:PL 0/1:102,101:203:99:2306,0,2283 10 49440346 rs6537556 C T 1031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.497;SOR=1.101 GT:AD:DP:GQ:PL 0/1:43,44:87:99:1060,0,1133 10 49658943 rs1867586 G T 5046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0;DB;DP=445;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-2.046;SOR=0.64 GT:AD:DP:GQ:PL 0/1:233,210:445:99:5075,0,5970 10 49661341 rs7092959 A G 2716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.157;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.178;SOR=0.74 GT:AD:DP:GQ:PL 0/1:115,117:235:99:2745,0,2636 10 49667713 rs1867575 G A 4137.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.646 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4166,394,0 10 49667795 rs3853761 T C 8432.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8461,861,0 10 49687800 rs4080665 G A 6392.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6421,662,0 10 50109902 rs2663046 G A 4033.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4062,419,0 10 50184949 rs2271565 C T 3322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.566;SOR=0.684 GT:AD:DP:GQ:PL 0/1:168,149:317:99:3351,0,4157 10 50186415 rs2292584 C T 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.696;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.895;SOR=0.678 GT:AD:DP:GQ:PL 0/1:94,79:173:99:2031,0,2109 10 50227785 rs1913525 T C 6246.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6275,615,0 10 50531214 rs4838383 C G 2958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.718;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.817;SOR=0.665 GT:AD:DP:GQ:PL 0/1:124,103:229:99:2987,0,3292 10 50531549 rs56206226 G T 3183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=0.491;SOR=0.54 GT:AD:DP:GQ:PL 0/1:132,135:267:99:3212,0,3353 10 50531604 rs7093235 T C 9607.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.98;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,253:253:99:9636,766,0 10 50531606 rs55780106 C A 3055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=1.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.983;SOR=0.81 GT:AD:DP:GQ:PL 0/1:130,127:257:99:3084,0,3451 10 50531972 rs45554335 A C 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.482;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=3.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=1.192;SOR=0.69 GT:AD:DP:GQ:PL 0/1:122,118:240:99:2902,0,3025 10 50532588 rs10857469 C G 3361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=-1.236;SOR=0.657 GT:AD:DP:GQ:PL 0/1:113,139:252:99:3390,0,2758 10 50532683 rs7921186 T C 7055.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,219:219:99:7084,657,0 10 50532812 rs11101093 A G 3132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.641;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-2.194;SOR=0.82 GT:AD:DP:GQ:PL 0/1:118,132:250:99:3161,0,2708 10 50533237 rs12217617 G A 3124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=0.443;SOR=1.027 GT:AD:DP:GQ:PL 0/1:100,120:220:99:3153,0,2498 10 50533463 rs10857470 T A 3390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.099;SOR=0.658 GT:AD:DP:GQ:PL 0/1:147,136:283:99:3419,0,3695 10 50533617 rs2377940 T C 3447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.632;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.307;SOR=0.693 GT:AD:DP:GQ:PL 0/1:164,147:311:99:3476,0,3842 10 50533841 rs11101094 G C 3901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.552;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.933;SOR=0.602 GT:AD:DP:GQ:PL 0/1:151,137:288:99:3930,0,4111 10 50534350 rs11101095 G A 5718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.875;ClippingRankSum=0;DB;DP=469;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=1.492;SOR=0.606 GT:AD:DP:GQ:PL 0/1:208,260:468:99:5747,0,4920 10 50534395 rs41301109 G A 3927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=4.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-0.962;SOR=1.001 GT:AD:DP:GQ:PL 0/1:261,189:450:99:3956,0,6168 10 50534646 rs12415544 C T 4614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=4.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.841;SOR=0.76 GT:AD:DP:GQ:PL 0/1:183,177:360:99:4643,0,4902 10 50534862 rs12411843 T C 1735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.039;SOR=0.693 GT:AD:DP:GQ:PL 0/1:71,71:142:99:1764,0,1812 10 50594509 rs12261515 C A 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.129 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4590,470,0 10 50681033 rs2229760 G A 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=-1.537;SOR=0.72 GT:AD:DP:GQ:PL 0/1:121,91:212:99:1931,0,2843 10 50701156 rs4253132 G A 1295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=0.029;SOR=0.845 GT:AD:DP:GQ:PL 0/1:71,59:130:99:1324,0,1818 10 50723684 rs4253073 G A 5607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.564;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=0.684;SOR=0.668 GT:AD:DP:GQ:PL 0/1:190,224:414:99:5636,0,5202 10 50724016 rs4253072 C T 10926.8 PASS AC=2;AF=1;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,364:364:99:10955,1088,0 10 50740876 rs2228524 G C 4732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=7.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.161;SOR=0.446 GT:AD:DP:GQ:PL 0/1:180,181:361:99:4761,0,4982 10 50820345 rs8187730 C A 5358.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5387,522,0 10 50822226 rs7923716 T G 3014.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=2.549 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3043,300,0 10 50856652 rs4838544 G A 2414.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2443,260,0 10 50863147 rs8178992 T C 5567.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5596,543,0 10 50901809 rs1153797 T G 4420.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.195 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4449,432,0 10 50901938 rs1133837 C T 2552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=1.206;SOR=0.934 GT:AD:DP:GQ:PL 0/1:87,106:193:99:2581,0,1905 10 50950976 rs11101224 G A 3186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=5.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-0.238;SOR=0.763 GT:AD:DP:GQ:PL 0/1:175,153:328:99:3215,0,3952 10 50953830 rs7910114 G A 1338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.694;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=4.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=1.281;SOR=1.178 GT:AD:DP:GQ:PL 0/1:62,57:119:99:1367,0,1449 10 50960209 rs1258184 G A 3460.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.69;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3489,373,0 10 51225281 rs199655682 C G 1382.88 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;BaseQRankSum=2.169;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=47.084;MLEAC=2;MLEAF=1;MQ=22.25;MQRankSum=-3.9;QD=20.64;ReadPosRankSum=4.06;SOR=8.254 GT:AD:DP:GQ:PL 1/1:6,61:67:16:1411,16,0 10 51225623 rs200187422 A G 3313.77 SNP_FS_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.666;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=206.075;MLEAC=1;MLEAF=0.5;MQ=28.75;MQRankSum=-0.573;QD=12.46;ReadPosRankSum=-0.566;SOR=3.276 GT:AD:DP:GQ:PL 0/1:127,139:266:99:3342,0,2498 10 51225724 rs200027998 G C 698.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.254;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.5;MQ=28.6;MQRankSum=-2.93;QD=3.58;ReadPosRankSum=0.15;SOR=0.496 GT:AD:DP:GQ:PL 0/1:149,46:195:99:727,0,3172 10 51225872 . G T 5296.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-2.714;ClippingRankSum=0;DP=213;ExcessHet=3.0103;FS=24.731;MLEAC=2;MLEAF=1;MQ=29.78;MQRankSum=-0.468;QD=24.87;ReadPosRankSum=2.096;SOR=1.004 GT:AD:DP:GQ:PL 1/1:6,207:213:99:5325,455,0 10 51226118 . G A 1540.77 SNP_MQ_filter AC=2;AF=1;AN=2;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=23.17;QD=26.56;SOR=4.407 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1569,174,0 10 51464656 rs202010272 G C 4980.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.72;QD=33.65;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,148:148:99:5009,444,0 10 51465552 rs76363375 A T 10765.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.96;QD=30.41;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,354:354:99:10794,1062,0 10 51465650 rs199898426 C T 7446.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.106;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=8.135;MLEAC=1;MLEAF=0.5;MQ=31.11;MQRankSum=1.998;QD=16.48;ReadPosRankSum=-1.387;SOR=1.007 GT:AD:DP:GQ:PL 0/1:129,323:452:99:7475,0,1836 10 51465783 rs4043619 T C 1261.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=9.359;MLEAC=1;MLEAF=0.5;MQ=23.82;MQRankSum=1.152;QD=16.6;ReadPosRankSum=0.555;SOR=2.056 GT:AD:DP:GQ:PL 0/1:22,54:76:99:1290,0,356 10 51465920 rs4043622 G A 670.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.319;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=11.841;MLEAC=1;MLEAF=0.5;MQ=28.59;MQRankSum=-0.342;QD=16.36;ReadPosRankSum=0.495;SOR=0.028 GT:AD:DP:GQ:PL 0/1:16,25:41:99:699,0,337 10 51466576 rs200931942 C T 656.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.76;QD=31.27;SOR=3.16 GT:AD:DP:GQ:PL 1/1:0,21:21:63:685,63,0 10 51480535 . T TA 183.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.5;MQ=39.3;MQRankSum=-5.03;QD=2.42;ReadPosRankSum=0.471;SOR=0.564 GT:AD:DP:GQ:PL 0/1:56,20:93:99:221,0,1199 10 51485976 rs201994933 C T 1330.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=22.78;QD=26.09;SOR=1.314 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1359,153,0 10 51486055 rs199907084 T C 1507.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.85;MQRankSum=1.175;QD=27.41;ReadPosRankSum=1.899;SOR=0.468 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1536,140,0 10 51568378 rs10761581 T G 1211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.589;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-0.014;SOR=0.936 GT:AD:DP:GQ:PL 0/1:69,55:124:99:1240,0,1581 10 51620317 rs200147310 A G 564.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.51;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=29.64;MQRankSum=-2.028;QD=16.61;ReadPosRankSum=0.542;SOR=1.329 GT:AD:DP:GQ:PL 0/1:10,24:34:99:593,0,179 10 51623147 rs373071373 C T 1993.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.89;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.5;MQ=36.7;MQRankSum=-0.65;QD=10.07;ReadPosRankSum=-0.074;SOR=0.443 GT:AD:DP:GQ:PL 0/1:107,91:198:99:2022,0,2601 10 51623174 rs141118546 C A 1694.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.572;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=2.994;MLEAC=1;MLEAF=0.5;MQ=35.11;MQRankSum=-0.525;QD=9.91;ReadPosRankSum=-0.671;SOR=0.478 GT:AD:DP:GQ:PL 0/1:93,78:171:99:1723,0,2310 10 51623190 rs137912947 T C 1482.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.995;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=32.55;MQRankSum=1.262;QD=11.58;ReadPosRankSum=-2.31;SOR=0.619 GT:AD:DP:GQ:PL 0/1:66,62:128:99:1511,0,1710 10 51748584 rs200504295 A G 1062.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=12.553;ClippingRankSum=0;DB;DP=454;ExcessHet=3.0103;FS=8.188;MLEAC=1;MLEAF=0.5;MQ=53.71;MQRankSum=-14.138;QD=2.36;ReadPosRankSum=-1.099;SOR=1.461 GT:AD:DP:GQ:PL 0/1:384,66:450:99:1091,0,9888 10 51748681 . AC A 4685.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.545;ClippingRankSum=0;DP=492;ExcessHet=3.0103;FS=8.711;MLEAC=1;MLEAF=0.5;MQ=53.14;MQRankSum=-1.506;QD=9.62;ReadPosRankSum=2.174;SOR=0.536 GT:AD:DP:GQ:PGT:PID:PL 0/1:316,171:487:99:0|1:51748681_AC_A:4723,0,13795 10 51748684 rs61848260 G A 4694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.013;ClippingRankSum=0;DB;DP=491;ExcessHet=3.0103;FS=8.634;MLEAC=1;MLEAF=0.5;MQ=53.16;MQRankSum=-1.445;QD=9.62;ReadPosRankSum=2.779;SOR=0.545 GT:AD:DP:GQ:PGT:PID:PL 0/1:315,173:488:99:0|1:51748681_AC_A:4723,0,13795 10 51769562 rs201341309 G A 6917.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.162;ClippingRankSum=0;DB;DP=552;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.56;MQRankSum=-2.007;QD=12.55;ReadPosRankSum=2.159;SOR=0.738 GT:AD:DP:GQ:PL 0/1:263,288:551:99:6946,0,6802 10 51769670 rs201151847 C T 8289.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DB;DP=725;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=36.12;MQRankSum=-0.829;QD=11.48;ReadPosRankSum=0.725;SOR=0.588 GT:AD:DP:GQ:PL 0/1:352,370:725:99:8318,0,7830 10 51769799 rs200385505 C A 4706.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.996;ClippingRankSum=0;DB;DP=471;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.5;MQ=32.47;MQRankSum=-1.893;QD=9.99;ReadPosRankSum=0.772;SOR=0.881 GT:AD:DP:GQ:PL 0/1:249,222:471:99:4735,0,5636 10 51827934 rs55875820 G A 5020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.164;ClippingRankSum=0;DB;DP=423;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.5;MQ=56.93;MQRankSum=0.523;QD=11.9;ReadPosRankSum=0.33;SOR=0.832 GT:AD:DP:GQ:PL 0/1:221,201:422:99:5049,0,5804 10 51853633 rs199520696 C T 329.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.613;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.261;MLEAC=1;MLEAF=0.5;MQ=37.88;MQRankSum=-1.094;QD=3;ReadPosRankSum=0.136;SOR=0.371 GT:AD:DP:GQ:PL 0/1:84,26:110:99:358,0,2290 10 51859837 . T A 39.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=28.13;MQRankSum=-0.385;QD=6.63;ReadPosRankSum=-0.674;SOR=0.991 GT:AD:DP:GQ:PL 0/1:3,3:6:68:68,0,72 10 51863872 rs199954057 T C 48.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.564;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=33.805;MLEAC=1;MLEAF=0.5;MQ=55.41;MQRankSum=-7.691;QD=0.51;ReadPosRankSum=-0.558;SOR=5.283 GT:AD:DP:GQ:PL 0/1:82,13:95:77:77,0,2014 10 51885927 . G A 142.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.709;ClippingRankSum=0;DP=172;ExcessHet=3.0103;FS=29.7;MLEAC=1;MLEAF=0.5;MQ=45.11;MQRankSum=-6.726;QD=0.83;ReadPosRankSum=-0.195;SOR=3.256 GT:AD:DP:GQ:PL 0/1:150,22:172:99:171,0,3731 10 51974489 . T C 388.77 SNP_MQ_filter AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.15;QD=27.77;SOR=2.985 GT:AD:DP:GQ:PL 1/1:0,14:14:42:417,42,0 10 52067916 rs76225070 G T 1449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.163;SOR=0.619 GT:AD:DP:GQ:PL 0/1:63,65:128:99:1478,0,1536 10 52103707 rs10763354 A G 8665.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8694,866,0 10 54074757 rs2241529 A G 8311.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8340,845,0 10 54528266 rs930507 G C 2625.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=1.638 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2654,248,0 10 55568527 rs139441645 C T 2461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.558;SOR=0.557 GT:AD:DP:GQ:PL 0/1:114,107:221:99:2490,0,2826 10 55755491 rs2135720 C T 1225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.205;SOR=0.585 GT:AD:DP:GQ:PL 0/1:50,49:99:99:1254,0,1295 10 55943184 rs7093302 T C 3036.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=1.584 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3065,278,0 10 56077209 rs10740579 G A 5118.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.338 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5147,516,0 10 57359697 rs11004928 C T 1448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.042;SOR=0.594 GT:AD:DP:GQ:PL 0/1:49,63:112:99:1477,0,1095 10 58118630 rs2241666 T C 2995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.087;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.42;SOR=0.663 GT:AD:DP:GQ:PL 0/1:127,125:252:99:3024,0,2923 10 60573753 rs9416746 G T 3154.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3183,312,0 10 60577393 rs4344442 T C 5164.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5193,534,0 10 60588553 rs4948550 T C 5949.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5978,596,0 10 61005244 rs2452505 G C 6370.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6399,609,0 10 61414011 rs2242206 G T 6052.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.099;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.02;ReadPosRankSum=1.319;SOR=0.234 GT:AD:DP:GQ:PL 1/1:1,223:224:99:6081,656,0 10 61552692 rs1053266 G T 5315.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=1.142 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5344,552,0 10 61552774 rs1053265 C T 5671.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.88;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5700,623,0 10 61612466 . T TA 62.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.453;QD=1.36;ReadPosRankSum=0.048;SOR=0.411 GT:AD:DP:GQ:PL 0/1:36,10:54:99:100,0,812 10 61665886 rs1171830 C A 4233.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4262,416,0 10 61828954 rs7923682 G A 2479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.205;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.254;SOR=0.623 GT:AD:DP:GQ:PL 0/1:122,105:227:99:2508,0,3023 10 61831290 rs28932171 T C 1647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=16.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.63;SOR=0.402 GT:AD:DP:GQ:PL 0/1:59,68:127:99:1676,0,1575 10 61831984 rs11599164 G T 1590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.246;SOR=0.637 GT:AD:DP:GQ:PL 0/1:84,71:155:99:1619,0,2084 10 61834573 rs17208576 G A 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.925;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-2.375;SOR=0.697 GT:AD:DP:GQ:PL 0/1:106,102:208:99:2501,0,2328 10 61842498 rs2393595 A G 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=0.09;SOR=0.704 GT:AD:DP:GQ:PL 0/1:55,58:113:99:1442,0,1417 10 61868716 rs3750800 C A 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-0.181;SOR=0.768 GT:AD:DP:GQ:PL 0/1:101,71:172:99:1600,0,2573 10 62029934 rs71495633 G C 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=2.042;SOR=0.636 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1464,0,1612 10 62551815 rs3212319 GC G 2759.73 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.62;QD=39.42;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2797,211,0 10 62551889 rs2456777 A G 4042.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=44.43;SOR=1.014 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,91:91:99:1|1:62551889_A_G:4071,274,0 10 62551890 rs2456778 A T 4042.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=44.43;SOR=1.014 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,91:91:99:1|1:62551889_A_G:4071,274,0 10 62645873 rs2271128 A G 1125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.391;SOR=0.655 GT:AD:DP:GQ:PL 0/1:51,52:103:99:1154,0,1222 10 63170292 rs7083475 A G 2599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.05;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.847;SOR=0.962 GT:AD:DP:GQ:PL 0/1:111,100:212:99:2628,0,2717 10 63520698 rs1992625 T C 4718.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4747,479,0 10 63760087 . CT C 174.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=6.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.39;ReadPosRankSum=-0.499;SOR=0.234 GT:AD:DP:GQ:PL 0/1:56,17:88:99:212,0,1327 10 63958112 rs3125734 T C 2811.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2840,267,0 10 63977011 rs148142088 GAAAAA G 1039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.375;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=3.715;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.627;QD=22.6;ReadPosRankSum=-0.466;SOR=1.255 GT:AD:DP:GQ:PL 0/1:20,26:76:99:1068,0,1435 10 63978077 rs11355398 GA G 469.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=4.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.248;SOR=0.235 GT:AD:DP:GQ:PL 0/1:22,26:48:99:507,0,423 10 63982984 rs10740069 A G 198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=3.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.85;ReadPosRankSum=-1.772;SOR=1.227 GT:AD:DP:GQ:PL 0/1:23,11:34:99:227,0,661 10 63995983 rs3852448 C T 765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-0.557;SOR=0.469 GT:AD:DP:GQ:PL 0/1:50,35:85:99:794,0,1359 10 64136710 rs149800343 CAG C 3749.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.286;QD=18.75;ReadPosRankSum=-0.637;SOR=0.702 GT:AD:DP:GQ:PL 0/1:101,99:200:99:3787,0,3890 10 64159333 rs3758490 G T 3158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.185;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.454;SOR=0.726 GT:AD:DP:GQ:PL 0/1:123,135:258:99:3187,0,3089 10 64564892 rs2236295 G T 3084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.971;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.84;SOR=0.702 GT:AD:DP:GQ:PL 0/1:142,121:263:99:3113,0,3668 10 64564934 rs10995311 C G 3649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.99;SOR=0.615 GT:AD:DP:GQ:PL 0/1:161,148:309:99:3678,0,3887 10 64573771 rs224083 C T 6896.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6925,710,0 10 64927823 rs1935 C G 374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=0.032;SOR=1.106 GT:AD:DP:GQ:PL 0/1:28,19:47:99:403,0,766 10 64945364 rs3211105 G A 1819.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1848,189,0 10 64967445 rs1904294 A T 4333.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4362,408,0 10 64974537 rs10761725 A T 3127.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3156,318,0 10 65225244 rs1061259 G C 5889.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.62;SOR=0.962 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,132:132:99:1|1:65225244_G_C:5918,397,0 10 65225245 rs10761770 A G 5889.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.62;SOR=0.962 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,132:132:99:1|1:65225244_G_C:5918,397,0 10 67726514 rs2105702 A C 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.338;SOR=0.641 GT:AD:DP:GQ:PL 0/1:29,28:57:99:722,0,714 10 68139039 rs41274090 G A 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.98;ReadPosRankSum=-0.538;SOR=0.743 GT:AD:DP:GQ:PL 0/1:108,60:168:99:1201,0,2569 10 69366602 rs3750863 T C 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.672;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.183;SOR=1.092 GT:AD:DP:GQ:PL 0/1:50,38:88:99:982,0,1269 10 69651319 rs36107781 T C 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=7.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.97;ReadPosRankSum=-2.402;SOR=0.283 GT:AD:DP:GQ:PL 0/1:42,62:104:99:1585,0,986 10 69750788 rs5785841 GA G 793.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;MQRankSum=0.422;QD=20.89;ReadPosRankSum=-0.491;SOR=0.804 GT:AD:DP:GQ:PL 1/1:2,36:38:59:831,59,0 10 69773841 rs866255 G A 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.325;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-1.211;SOR=0.793 GT:AD:DP:GQ:PL 0/1:71,50:121:99:1158,0,1757 10 69773931 rs35133402 A G 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.855;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=5.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.205;SOR=1.243 GT:AD:DP:GQ:PL 0/1:64,59:123:99:1476,0,1553 10 69926097 rs2673794 T C 6922.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6951,698,0 10 69926334 rs10823148 C G 6722.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6751,645,0 10 69933921 rs10997975 G A 5373.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=1.045 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5402,566,0 10 69933969 rs7916821 G A 6810.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6839,684,0 10 69934258 rs3814182 C G 7068.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7097,695,0 10 69935235 rs6480306 T C 3039.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3068,297,0 10 69948844 rs10733838 T C 3981.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4010,375,0 10 69959242 rs7079481 C A 6995.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=28.44;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7024,737,0 10 69959345 rs11279655 GCTGGGA G 5217.73 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=44.6;SOR=1.417 GT:AD:DP:GQ:PL 1/1:0,117:117:99:5255,353,0 10 70043916 rs736535 G A 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.571;SOR=0.619 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1146,0,1289 10 70044031 rs4142048 T C 1197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.888;SOR=0.733 GT:AD:DP:GQ:PL 0/1:70,55:125:99:1226,0,1523 10 70051808 rs11387118 G GA 1208.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.52;MLEAC=1;MLEAF=0.5;MQ=60.79;MQRankSum=3.17;QD=10.42;ReadPosRankSum=-0.953;SOR=0.517 GT:AD:DP:GQ:PL 0/1:59,57:116:99:1246,0,2301 10 70051810 rs3835100 A G 1555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.308;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.5;MQ=60.98;MQRankSum=-3.403;QD=12.96;ReadPosRankSum=1.452;SOR=0.93 GT:AD:DP:GQ:PL 0/1:61,59:120:99:1584,0,2334 10 70051928 rs10823171 A G 2120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.796;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=-3.106;QD=12.48;ReadPosRankSum=0.558;SOR=0.947 GT:AD:DP:GQ:PL 0/1:84,86:170:99:2149,0,1741 10 70100987 rs144723762 A G 1244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.851;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=1.163;SOR=0.883 GT:AD:DP:GQ:PL 0/1:42,51:93:99:1273,0,969 10 70105560 rs1162753 G A 1308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.762;SOR=0.765 GT:AD:DP:GQ:PL 0/1:62,56:118:99:1337,0,1555 10 70225504 rs3758626 G T 2970.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2999,312,0 10 70227964 rs10998205 C T 3624.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3653,372,0 10 70332672 rs12773594 T A 5203.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5232,537,0 10 70332862 rs12221107 C T 1673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.341;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=0.539;SOR=0.731 GT:AD:DP:GQ:PL 0/1:95,70:165:99:1702,0,2746 10 70405237 rs12241767 G A 1753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=-0.417;SOR=0.696 GT:AD:DP:GQ:PL 0/1:121,75:196:99:1782,0,3329 10 70405539 rs16925541 A G 1951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.152;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=-1.339;SOR=0.622 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1980,0,1701 10 70405855 rs3998860 A G 2012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.488;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-0.357;SOR=0.987 GT:AD:DP:GQ:PL 0/1:78,76:154:99:2041,0,1867 10 70502288 rs1300253 G A 3079.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3108,306,0 10 70506902 rs374748155 C CT 228.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.292;QD=6.02;ReadPosRankSum=-0.538;SOR=1.516 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,15:38:99:1|0:70506892_C_CT:266,0,495 10 70508874 rs34521154 T C 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.515;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-0.761;SOR=0.513 GT:AD:DP:GQ:PL 0/1:43,52:95:99:1379,0,989 10 70531217 rs10823258 C T 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=-1.183;SOR=0.307 GT:AD:DP:GQ:PL 0/1:22,42:64:99:994,0,454 10 70547888 rs151259644 TTTATA T 973.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=10.514;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.981;QD=19.87;ReadPosRankSum=1.481;SOR=1.304 GT:AD:DP:GQ:PL 0/1:23,26:49:99:1011,0,1463 10 70587497 . T C 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.365;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=4.287;MLEAC=1;MLEAF=0.5;MQ=52.53;MQRankSum=-1.038;QD=9.25;ReadPosRankSum=0.193;SOR=0.369 GT:AD:DP:GQ:PL 0/1:54,36:90:99:861,0,1440 10 70641860 rs1341667 T C 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.587;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.036;SOR=0.865 GT:AD:DP:GQ:PL 0/1:58,36:94:99:944,0,1447 10 70645002 rs200891384 G C 2700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.584;SOR=0.804 GT:AD:DP:GQ:PL 0/1:102,112:214:99:2729,0,2596 10 70696713 rs5030895 C T 4351.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.267 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4380,437,0 10 70700944 rs5030900 A G 2638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.891;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.589;QD=13.67;ReadPosRankSum=1.194;SOR=0.802 GT:AD:DP:GQ:PL 0/1:86,107:193:99:2667,0,1949 10 70725128 rs3898314 A G 977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.09;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-0.33;SOR=0.593 GT:AD:DP:GQ:PL 0/1:48,45:93:99:1006,0,1074 10 70856852 rs2229498 G A 1328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=1.244;SOR=0.737 GT:AD:DP:GQ:PL 0/1:80,61:141:99:1357,0,1894 10 70892791 rs5030932 C T 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.12;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=-0.54;SOR=0.445 GT:AD:DP:GQ:PL 0/1:78,42:120:99:1026,0,1991 10 70922159 rs61871361 T C 618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.98;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.34;ReadPosRankSum=1.161;SOR=0.813 GT:AD:DP:GQ:PL 0/1:7,22:29:99:647,0,125 10 70940191 rs2292192 C T 3694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.162;SOR=0.62 GT:AD:DP:GQ:PL 0/1:126,148:274:99:3723,0,3090 10 70945840 rs5030910 C T 451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.79;ReadPosRankSum=-0.696;SOR=0.561 GT:AD:DP:GQ:PL 0/1:35,23:58:99:480,0,966 10 70958327 rs5030911 C T 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.244;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.301;SOR=1.207 GT:AD:DP:GQ:PL 0/1:41,41:82:99:1079,0,1022 10 70968804 rs373514760 G GT 575.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=5.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.48;ReadPosRankSum=0.516;SOR=1.327 GT:AD:DP:GQ:PL 0/1:47,30:86:99:613,0,834 10 70992664 rs874556 C T 2833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.731;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=1.336;SOR=0.754 GT:AD:DP:GQ:PL 0/1:108,124:232:99:2862,0,2717 10 71010026 rs4745978 T C 3685.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3714,375,0 10 71018660 rs1111335 T C 5061.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5090,530,0 10 71026510 rs906219 C A 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.832;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=0.731;SOR=0.596 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1330,0,1767 10 71060610 rs906220 A G 2080.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.62;SOR=0.952 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,50:50:99:1|1:71060610_A_G:2109,153,0 10 71060634 rs906221 G A 1755.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.82;SOR=1.075 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,41:41:99:1|1:71060610_A_G:1784,123,0 10 71142420 rs748235 G A 7118.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.5;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7147,677,0 10 71164655 rs2229170 C T 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=0.889;SOR=0.712 GT:AD:DP:GQ:PL 0/1:105,89:194:99:2028,0,2696 10 71168685 rs55953810 A T 2123.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.58;QD=31.23;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2152,204,0 10 71332204 rs4536103 A G 3156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.71;ReadPosRankSum=0.713;SOR=0.553 GT:AD:DP:GQ:PL 0/1:84,117:201:99:3185,0,2073 10 71562437 rs10998973 G A 2740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.147;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.011;SOR=0.918 GT:AD:DP:GQ:PL 0/1:104,102:206:99:2769,0,2637 10 71647196 rs113746607 G GT 88.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.93;ReadPosRankSum=1.251;SOR=0.629 GT:AD:DP:GQ:PL 0/1:78,17:97:99:126,0,1575 10 71657272 rs1227746 A G 4874.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4903,456,0 10 71658512 rs1227747 G A 3462.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3491,360,0 10 71876382 rs2394656 C T 5912.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5941,564,0 10 71880979 . CAA C 86.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=5.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=-0.636;SOR=0.086 GT:AD:DP:GQ:PL 0/1:5,6:17:99:115,0,197 10 71905569 rs3750774 C A 3260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.58;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=0.31;SOR=0.757 GT:AD:DP:GQ:PL 0/1:120,122:242:99:3289,0,3608 10 71906005 rs145700158 A G 3984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-1.531;SOR=0.719 GT:AD:DP:GQ:PL 0/1:138,152:290:99:4013,0,3635 10 71906150 rs4746970 T C 4084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.092;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.111;SOR=0.615 GT:AD:DP:GQ:PL 0/1:146,154:300:99:4113,0,3729 10 71969062 rs9415006 G A 543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=3.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=-1.243;SOR=0.368 GT:AD:DP:GQ:PL 0/1:33,28:61:99:572,0,801 10 72179746 rs1043098 C T 3778.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3807,396,0 10 72181460 rs3793809 G T 2690.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2719,270,0 10 72195439 rs1904589 T C 7228.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7257,707,0 10 72201219 rs10999338 G A 4872.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4901,486,0 10 72289701 rs2275059 G A 2020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.828;SOR=0.725 GT:AD:DP:GQ:PL 0/1:100,89:189:99:2049,0,2375 10 72294183 rs146549491 C T 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.189;SOR=0.779 GT:AD:DP:GQ:PL 0/1:47,40:87:99:941,0,1237 10 72298631 rs1122918 T C 2578.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.286 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2607,260,0 10 72307101 rs3740447 C T 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.456;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.33;ReadPosRankSum=0.791;SOR=0.583 GT:AD:DP:GQ:PL 0/1:45,65:110:99:1714,0,1085 10 72324143 rs7093516 A G 5950.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5979,605,0 10 72326400 rs10999406 G A 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.37;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.627;SOR=0.576 GT:AD:DP:GQ:PL 0/1:61,72:133:99:1687,0,1361 10 72358577 rs885822 G A 9584.77 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,322:322:99:9613,961,0 10 72358655 rs885821 G A 3605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.163;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=5.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.391;SOR=1.006 GT:AD:DP:GQ:PL 0/1:161,145:306:99:3634,0,3874 10 72500763 rs10823607 T C 6383.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6412,663,0 10 72500863 rs10999500 C G 3001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.759;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=1.067;SOR=0.565 GT:AD:DP:GQ:PL 0/1:145,118:263:99:3030,0,3693 10 72503344 rs10999502 G A 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.52;ReadPosRankSum=-1.353;SOR=0.836 GT:AD:DP:GQ:PL 0/1:168,95:263:99:2005,0,4170 10 72513682 rs2587475 C T 3478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.648;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-1.832;SOR=0.706 GT:AD:DP:GQ:PL 0/1:162,151:313:99:3507,0,3874 10 72517837 rs6480463 C T 4169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.023;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=5.016;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=1.504;SOR=0.957 GT:AD:DP:GQ:PL 0/1:164,163:327:99:4198,0,4133 10 72520330 rs10823615 A G 4094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.72;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.93;SOR=0.718 GT:AD:DP:GQ:PL 0/1:149,165:314:99:4123,0,3611 10 72535007 rs2254174 C T 3073.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=1.122 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3102,294,0 10 72604263 rs12770335 G T 1562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=0.579;SOR=0.546 GT:AD:DP:GQ:PL 0/1:56,60:116:99:1591,0,1397 10 72619205 rs827255 C T 3016.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3045,315,0 10 72631626 rs865832 C T 1320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.099;SOR=0.77 GT:AD:DP:GQ:PL 0/1:46,58:106:99:1349,0,1111 10 72635143 rs3998628 ATT A 550.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.379;QD=9.83;ReadPosRankSum=-0.65;SOR=0.603 GT:AD:DP:GQ:PL 0/1:36,20:56:99:588,0,1280 10 73044580 rs12770025 G A 9639.77 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,328:328:99:9668,983,0 10 73104056 rs2243540 A G 2628.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.67;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2657,285,0 10 73111408 rs780668 C T 2353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.718;SOR=0.629 GT:AD:DP:GQ:PL 0/1:117,109:226:99:2382,0,2839 10 73115941 rs2252997 T C 10091.8 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.46;SOR=0.72 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,227:227:99:1|1:73115941_T_C:10120,683,0 10 73115942 rs2252996 G A 10091.8 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.25;SOR=0.72 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,223:223:99:1|1:73115941_T_C:10120,683,0 10 73121913 rs2487068 A G 7277.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.067;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.45;ReadPosRankSum=-0.922;SOR=0.827 GT:AD:DP:GQ:PL 1/1:2,237:239:99:7306,667,0 10 73121945 rs1084004 T C 8042.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,251:251:99:8071,753,0 10 73270906 rs3802720 T C 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.276;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-1.268;SOR=0.682 GT:AD:DP:GQ:PL 0/1:56,56:112:99:1510,0,1360 10 73270982 rs3802719 G A 1395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.12;ReadPosRankSum=-0.39;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,37:73:99:0|1:73270982_G_A:1424,0,1571 10 73455201 rs3752752 T C 1668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.05;ReadPosRankSum=1.468;SOR=0.882 GT:AD:DP:GQ:PL 0/1:40,64:104:99:1697,0,981 10 73455273 rs3752751 T C 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.512;SOR=0.711 GT:AD:DP:GQ:PL 0/1:54,75:129:99:1765,0,1163 10 73492079 rs1227065 A G 2486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.545;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=1.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.734;SOR=0.59 GT:AD:DP:GQ:PL 0/1:156,108:264:99:2515,0,3750 10 73501556 rs1227051 G A 3063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=1.937;SOR=0.632 GT:AD:DP:GQ:PL 0/1:125,125:250:99:3092,0,3089 10 73515103 rs3747858 G T 2345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=2.954;SOR=0.692 GT:AD:DP:GQ:PL 0/1:94,107:201:99:2374,0,2114 10 73520632 rs3747869 A C 3101.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3130,315,0 10 73521371 rs3747867 C T 1866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.259;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.24;ReadPosRankSum=-0.229;SOR=0.963 GT:AD:DP:GQ:PL 0/1:166,92:258:99:1895,0,4718 10 73533177 rs3747862 A G 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-0.249;SOR=0.673 GT:AD:DP:GQ:PL 0/1:107,97:204:99:2168,0,2519 10 73537978 rs10762480 C T 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=0.482;SOR=0.675 GT:AD:DP:GQ:PL 0/1:110,62:172:99:1407,0,2788 10 73544086 rs3802711 G A 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.395;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=1.989;SOR=0.743 GT:AD:DP:GQ:PL 0/1:96,80:176:99:1977,0,2286 10 73550117 rs11592462 C G 1723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=4.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.965;SOR=0.474 GT:AD:DP:GQ:PL 0/1:92,69:161:99:1752,0,2470 10 73550969 rs10466026 G A 1790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.505;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.309;SOR=0.72 GT:AD:DP:GQ:PL 0/1:64,77:141:99:1819,0,1792 10 73558852 rs4747193 A G 1088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=4.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.952;SOR=0.364 GT:AD:DP:GQ:PL 0/1:56,50:106:99:1117,0,1424 10 73558886 rs4747194 G A 1357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.16;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=3.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.071;SOR=0.473 GT:AD:DP:GQ:PL 0/1:74,64:138:99:1386,0,1773 10 73558952 rs4747195 C T 1667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.16;SOR=0.562 GT:AD:DP:GQ:PL 0/1:81,69:150:99:1696,0,2026 10 73562744 rs10823849 G A 2239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=0.534;SOR=0.714 GT:AD:DP:GQ:PL 0/1:76,95:171:99:2268,0,1804 10 73570334 rs11818398 G A 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.448;SOR=0.839 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1251,0,1213 10 73578882 rs4747203 T C 773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.557;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.17;ReadPosRankSum=0.071;SOR=1.028 GT:AD:DP:GQ:PL 0/1:21,30:51:99:802,0,404 10 73579217 rs11000016 C T 1361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=1.392;SOR=0.566 GT:AD:DP:GQ:PL 0/1:85,60:145:99:1390,0,2363 10 74237247 rs35126406 C CT 2613.73 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.81;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2651,214,0 10 74671611 rs3750736 C T 3190.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3219,332,0 10 74906122 . TA T 213.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0;DP=89;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.56;ReadPosRankSum=0.526;SOR=0.481 GT:AD:DP:GQ:PL 0/1:43,17:80:99:251,0,1012 10 75135833 . TA T 148.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=2.775;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.84;ReadPosRankSum=0.923;SOR=1.004 GT:AD:DP:GQ:PL 0/1:62,19:96:99:186,0,1501 10 75434641 rs201458716 G A 1817.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0;DB;DP=965;ExcessHet=3.0103;FS=16.443;MLEAC=1;MLEAF=0.5;MQ=39.11;MQRankSum=-2.668;QD=1.89;ReadPosRankSum=-3.482;SOR=1.708 GT:AD:DP:GQ:PL 0/1:795,169:964:99:1846,0,21408 10 75558867 rs2271271 G A 2512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.727;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=1.31;SOR=0.642 GT:AD:DP:GQ:PL 0/1:126,103:229:99:2541,0,3573 10 75632760 rs2675671 C T 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.594;SOR=0.478 GT:AD:DP:GQ:PL 0/1:32,34:66:99:722,0,760 10 75673101 rs2227564 T C 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.084;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-1.383;SOR=0.693 GT:AD:DP:GQ:PL 0/1:53,57:110:99:1387,0,1236 10 75673731 rs2227566 C T 1255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.198;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.5;ReadPosRankSum=1.632;SOR=0.528 GT:AD:DP:GQ:PL 0/1:34,47:81:99:1284,0,1004 10 75865065 rs767809 G A 2127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-2.77;SOR=0.755 GT:AD:DP:GQ:PL 0/1:99,93:192:99:2156,0,2532 10 75871735 rs2131956 C G 3031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.786;SOR=0.618 GT:AD:DP:GQ:PL 0/1:158,137:295:99:3060,0,3677 10 75889760 rs35456205 GA G 249.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.183;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.5;MQ=60.52;MQRankSum=2.246;QD=4.62;ReadPosRankSum=-1.477;SOR=1.201 GT:AD:DP:GQ:PL 0/1:35,19:57:99:287,0,844 10 75936611 rs10824095 C T 2593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=4.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.012;SOR=0.998 GT:AD:DP:GQ:PL 0/1:122,103:225:99:2622,0,3267 10 76854564 rs3088142 C T 2812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.495;SOR=0.53 GT:AD:DP:GQ:PL 0/1:120,128:248:99:2841,0,3009 10 76855326 rs3740318 A G 2057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.668;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-2.859;SOR=0.804 GT:AD:DP:GQ:PL 0/1:92,83:175:99:2086,0,2166 10 76855412 rs3740317 G A 2752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.575;SOR=0.659 GT:AD:DP:GQ:PL 0/1:108,118:226:99:2781,0,2523 10 76858961 rs3832680 CT C 5001.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.98;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=2.099;QD=20.09;ReadPosRankSum=0.569;SOR=0.623 GT:AD:DP:GQ:PL 0/1:104,145:249:99:5039,0,3410 10 76865439 rs141536020 G A 1795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.581;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.19;SOR=0.617 GT:AD:DP:GQ:PL 0/1:101,76:177:99:1824,0,2619 10 76867899 rs7912300 T C 3569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.643;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.469;SOR=0.641 GT:AD:DP:GQ:PL 0/1:146,132:278:99:3598,0,3809 10 77807027 rs1898071 T C 2244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.097;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.02;SOR=0.689 GT:AD:DP:GQ:PL 0/1:97,99:198:99:2273,0,2106 10 79566632 rs1058198 G A 2425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.78;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.996;SOR=0.791 GT:AD:DP:GQ:PL 0/1:122,105:227:99:2454,0,2725 10 79579222 rs1248634 G A 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.467;SOR=0.884 GT:AD:DP:GQ:PL 0/1:100,108:208:99:2439,0,2386 10 79584178 rs1248629 G C 3405.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3434,353,0 10 79588620 rs66642452 GCTCCAGC G 2799.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.808;QD=18.06;ReadPosRankSum=1.369;SOR=0.632 GT:AD:DP:GQ:PL 0/1:80,75:155:99:2837,0,3091 10 79616605 rs1248696 T C 6628.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.13;ReadPosRankSum=2.188;SOR=0.438 GT:AD:DP:GQ:PL 1/1:1,219:220:99:6657,624,0 10 79628875 rs1248655 A G 4715.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4744,494,0 10 81060474 rs1250549 T C 3449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.52;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=6.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=1.361;SOR=0.398 GT:AD:DP:GQ:PL 0/1:99,136:235:99:3478,0,2619 10 81065371 rs113334887 C G 459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=13.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.89;ReadPosRankSum=0.368;SOR=2.087 GT:AD:DP:GQ:PL 0/1:64,30:94:99:488,0,1492 10 81109458 rs2233719 C T 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.425;SOR=0.722 GT:AD:DP:GQ:PL 0/1:75,74:149:99:1677,0,1790 10 81154101 rs73295299 G A 4022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.389;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=6.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.807;SOR=1.027 GT:AD:DP:GQ:PL 0/1:147,168:315:99:4051,0,3340 10 81318663 rs17886395 C G 3794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.361;SOR=0.578 GT:AD:DP:GQ:PL 0/1:168,157:325:99:3823,0,4196 10 81319214 rs1059046 G T 1525.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.496;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.99;MQRankSum=-15.626;QD=5.1;ReadPosRankSum=-0.063;SOR=0.692 GT:AD:DP:GQ:PL 0/1:222,77:299:99:1554,0,6112 10 81319267 rs1650232 C T 1352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.648;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=5.49;MLEAC=1;MLEAF=0.5;MQ=51.88;MQRankSum=-11.748;QD=6.41;ReadPosRankSum=-1.694;SOR=0.413 GT:AD:DP:GQ:PL 0/1:152,59:211:99:1381,0,4155 10 81319423 rs1975008 C T 5434.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.15;QD=31.6;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5463,516,0 10 81371637 rs1059047 T C 3725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.064;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=6.012;MLEAC=1;MLEAF=0.5;MQ=47.52;MQRankSum=-11.279;QD=12.42;ReadPosRankSum=-0.786;SOR=0.535 GT:AD:DP:GQ:PL 0/1:145,155:302:99:3754,0,3274 10 81371729 rs1136450 C G 1505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.864;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=23.264;MLEAC=1;MLEAF=0.5;MQ=42.25;MQRankSum=-2.719;QD=8.23;ReadPosRankSum=-1.588;SOR=2.098 GT:AD:DP:GQ:PL 0/1:125,58:183:99:1534,0,3314 10 81372081 rs1136451 A G 3379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.718;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=6.503;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1;QD=12.52;ReadPosRankSum=0.834;SOR=1.036 GT:AD:DP:GQ:PL 0/1:136,134:270:99:3408,0,3145 10 81373521 rs141764116 A G 2676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=6.849;MLEAC=1;MLEAF=0.5;MQ=50.14;MQRankSum=-0.905;QD=10.62;ReadPosRankSum=-1.463;SOR=0.552 GT:AD:DP:GQ:PL 0/1:136,116:252:99:2705,0,3279 10 81466030 rs201336686 C A 1611.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.134;ClippingRankSum=0;DB;DP=438;ExcessHet=3.0103;FS=4.015;MLEAC=1;MLEAF=0.5;MQ=31.12;MQRankSum=-1.677;QD=3.68;ReadPosRankSum=1.003;SOR=0.45 GT:AD:DP:GQ:PL 0/1:329,109:438:99:1640,0,7863 10 81470400 rs201697958 C T 746.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.625;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=11.05;MLEAC=1;MLEAF=0.5;MQ=28.68;MQRankSum=-3.153;QD=3.87;ReadPosRankSum=2.705;SOR=2.28 GT:AD:DP:GQ:PL 0/1:147,46:193:99:775,0,4107 10 81472107 . T C 118.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.09;ClippingRankSum=0;DP=327;ExcessHet=3.0103;FS=72.161;MLEAC=1;MLEAF=0.5;MQ=43.41;MQRankSum=-9.789;QD=0.37;ReadPosRankSum=0.538;SOR=4.928 GT:AD:DP:GQ:PL 0/1:285,40:325:99:147,0,7490 10 81697818 rs1051246 A G 2241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.851;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.499;SOR=0.885 GT:AD:DP:GQ:PL 0/1:87,89:176:99:2270,0,2153 10 81697868 rs3088308 A T 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.16;SOR=0.716 GT:AD:DP:GQ:PL 0/1:82,83:165:99:1967,0,2032 10 81701722 rs2243639 T C 1601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-0.03;SOR=1.022 GT:AD:DP:GQ:PL 0/1:55,65:120:99:1630,0,1380 10 81706324 rs721917 A G 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.845;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=2.167;SOR=1.115 GT:AD:DP:GQ:PL 0/1:72,72:144:99:1913,0,1641 10 81841421 rs113172526 C CA 917.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.089;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.054;QD=9.09;ReadPosRankSum=-1.432;SOR=0.902 GT:AD:DP:GQ:PL 0/1:58,43:112:99:955,0,1132 10 81901943 rs7080405 G C 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.89;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.506;SOR=0.848 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1221,0,1225 10 81904097 rs149506488 G GAGA 3994.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.074;QD=17.83;ReadPosRankSum=-0.884;SOR=0.651 GT:AD:DP:GQ:PL 0/1:119,105:224:99:4032,0,4584 10 81904638 rs2819874 G A 1322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.345;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=0.596;SOR=0.566 GT:AD:DP:GQ:PL 0/1:86,58:144:99:1351,0,2001 10 81926702 rs1049550 G A 1045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=1.056;SOR=0.734 GT:AD:DP:GQ:PL 0/1:72,50:122:99:1074,0,1876 10 81926718 rs2228427 A G 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.422;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=1.015;SOR=0.65 GT:AD:DP:GQ:PL 0/1:47,62:109:99:1672,0,1024 10 81926750 rs34332933 G C 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.176;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.03;ReadPosRankSum=1.642;SOR=0.772 GT:AD:DP:GQ:PL 0/1:35,49:84:99:1375,0,791 10 82033594 rs2993763 G A 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.359;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.38;SOR=0.683 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1189,0,1363 10 82034262 rs2994388 G A 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.75;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.246;SOR=0.652 GT:AD:DP:GQ:PL 0/1:73,83:156:99:2031,0,1691 10 82034842 rs10887711 A G 2578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=4.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.008;SOR=0.442 GT:AD:DP:GQ:PL 0/1:103,108:211:99:2607,0,2516 10 82034854 rs10788546 T C 2547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=7.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.035;SOR=0.382 GT:AD:DP:GQ:PL 0/1:97,103:200:99:2576,0,2337 10 82040052 rs1143694 A G 2566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.137;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.685;SOR=0.587 GT:AD:DP:GQ:PL 0/1:108,110:218:99:2595,0,2415 10 82122793 rs1538818 G A 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=2.213;SOR=0.767 GT:AD:DP:GQ:PL 0/1:62,54:116:99:1260,0,1569 10 82269238 rs10785897 C T 1426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=3.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=1.474;SOR=0.438 GT:AD:DP:GQ:PL 0/1:85,67:152:99:1455,0,2064 10 84745256 rs2295933 C T 4494.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4523,447,0 10 85993836 rs4933986 A G 4863.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4892,488,0 10 86004865 rs11200938 C T 2690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.08;ReadPosRankSum=-0.728;SOR=0.616 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,70:141:99:0|1:86004865_C_T:2719,0,3237 10 86004873 rs2279227 T C 2871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.73;ReadPosRankSum=-0.104;SOR=0.651 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,80:162:99:0|1:86004865_C_T:2900,0,3314 10 86012713 rs1042454 C T 3196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-1.255;SOR=0.576 GT:AD:DP:GQ:PL 0/1:130,144:274:99:3225,0,2990 10 86185654 rs1336202 T G 2374.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2403,224,0 10 88126056 rs11202000 T G 867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.307;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=1.829;SOR=0.749 GT:AD:DP:GQ:PL 0/1:44,33:77:99:896,0,991 10 88203068 rs7094132 T C 4101.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4130,440,0 10 88213604 rs6586011 A G 2630.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=1.367 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2659,246,0 10 88230874 rs2288362 G A 2552.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2581,270,0 10 88256943 rs4934215 C T 2006.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2035,210,0 10 88277457 rs10887621 C T 6025.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6054,584,0 10 88414570 rs11202106 G A 1444.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=19.26;SOR=4.949 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1473,208,0 10 88422116 rs1079610 C T 5664.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5693,576,0 10 88422151 rs3740337 C A 5001.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.292;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=5.867;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.91;ReadPosRankSum=0.318;SOR=0.095 GT:AD:DP:GQ:PL 1/1:3,170:173:99:5030,488,0 10 88441570 rs45563234 G A 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.474;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-0.604;SOR=1.003 GT:AD:DP:GQ:PL 0/1:72,77:149:99:2073,0,1719 10 88702350 rs4934281 G C 9194.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.8;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,272:272:99:9223,815,0 10 88717140 rs4244973 T A 4560.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.218 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4589,444,0 10 88717154 rs3750823 C T 4974.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.124 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5003,491,0 10 88718436 rs1800373 A C 6032.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6061,567,0 10 88820592 rs17096421 A T 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.518;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-1.36;SOR=0.756 GT:AD:DP:GQ:PL 0/1:71,82:153:99:2093,0,1619 10 88911841 rs77879311 A G 1590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=7.997;MLEAC=1;MLEAF=0.5;MQ=58.73;MQRankSum=-0.081;QD=12.33;ReadPosRankSum=2.206;SOR=0.591 GT:AD:DP:GQ:PL 0/1:62,67:129:99:1619,0,1598 10 88930249 rs11202365 A T 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.716;QD=15.38;ReadPosRankSum=0.561;SOR=0.731 GT:AD:DP:GQ:PL 0/1:25,45:70:99:1105,0,580 10 88939962 rs7081609 T C 2180.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.12;QD=30.72;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2209,212,0 10 88988731 rs200367261 C G 1951.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.592;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=17.018;MLEAC=2;MLEAF=1;MQ=39.03;MQRankSum=2.579;QD=32.53;ReadPosRankSum=-1.194;SOR=2.16 GT:AD:DP:GQ:PL 1/1:3,57:60:97:1980,97,0 10 88992622 rs200484233 C T 1089.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.362;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=28.88;MQRankSum=-1.674;QD=15.57;ReadPosRankSum=2.231;SOR=1.329 GT:AD:DP:GQ:PL 0/1:27,43:70:99:1118,0,664 10 88992644 rs199899922 G A 2186.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.48;QD=31.69;SOR=5.166 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2215,207,0 10 89267957 rs3843597 C T 1802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=6.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=0.396;SOR=0.907 GT:AD:DP:GQ:PL 0/1:61,70:131:99:1831,0,1518 10 89469083 rs78844987 CATAT C 601.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.581;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.53;MQRankSum=1.269;QD=19.41;ReadPosRankSum=-1.222;SOR=0.693 GT:AD:DP:GQ:PL 0/1:13,18:31:99:639,0,576 10 90342837 rs2296545 C G 4940.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=1.521 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4969,469,0 10 90356598 rs1409136 A G 1847.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1876,192,0 10 90433345 rs6586145 T A 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=0.708;SOR=0.892 GT:AD:DP:GQ:PL 0/1:30,37:67:99:980,0,773 10 90484420 rs56390975 C A 2261.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=43.5;SOR=1.244 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,52:52:99:1|1:90484420_C_A:2290,159,0 10 90484422 rs11358016 GA G 2252.73 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=42.5;SOR=1.287 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:90484420_C_A:2290,159,0 10 90665355 rs17114071 G A 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.138;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=0.298;SOR=0.931 GT:AD:DP:GQ:PL 0/1:86,54:140:99:1197,0,2131 10 90767482 rs2229521 A G 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=0.348;SOR=0.849 GT:AD:DP:GQ:PL 0/1:123,87:210:99:1920,0,3030 10 90771829 rs2234978 T C 1796.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1825,188,0 10 90966393 rs17382301 G A 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=5.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.352;SOR=1.103 GT:AD:DP:GQ:PL 0/1:100,73:173:99:1748,0,2700 10 91007360 rs1051338 T G 987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.718;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.398;SOR=0.904 GT:AD:DP:GQ:PL 0/1:59,45:104:99:1016,0,1358 10 91066075 rs2070845 A G 1981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.996;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.259;SOR=0.81 GT:AD:DP:GQ:PL 0/1:90,76:166:99:2010,0,2306 10 91066460 rs954439 T A 5090.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5119,522,0 10 91066769 rs1727 C A 3989.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4018,384,0 10 91099630 rs3780878 T C 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-0.674;SOR=0.539 GT:AD:DP:GQ:PL 0/1:77,64:141:99:1480,0,1955 10 91143529 rs304494 T A 5700.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=30.65;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5729,558,0 10 91162497 rs303211 A G 5648.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.122;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=34.23;ReadPosRankSum=1.885;SOR=0.327 GT:AD:DP:GQ:PL 1/1:1,164:165:99:5677,459,0 10 91162677 rs303210 C T 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.65;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=4.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-1.301;SOR=0.955 GT:AD:DP:GQ:PL 0/1:96,99:195:99:2464,0,2792 10 91178000 rs304448 C T 4552.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4581,426,0 10 91352966 rs2296616 G A 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-1.059;SOR=0.538 GT:AD:DP:GQ:PL 0/1:74,82:156:99:1940,0,1691 10 92678740 rs11272507 AATAAATAAATATATATAT A 1685.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=5.086;MLEAC=1;MLEAF=0.5;MQ=61.36;MQRankSum=0.668;QD=25.54;ReadPosRankSum=0.768;SOR=1.006 GT:AD:DP:GQ:PGT:PID:PL 0/1:22,44:66:99:0|1:92678740_AATAAATAAATATATATAT_A:1723,0,759 10 92678742 . TAA T 243.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=2.62;MLEAC=1;MLEAF=0.5;MQ=61.4;MQRankSum=-1.047;QD=4;ReadPosRankSum=0.088;SOR=0.654 GT:AD:DP:GQ:PL 0/1:48,13:61:99:281,0,1853 10 92678748 rs10881854 A T 245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.5;MQ=61.4;MQRankSum=-1.036;QD=3.96;ReadPosRankSum=1.038;SOR=1.039 GT:AD:DP:GQ:PL 0/1:49,13:62:99:274,0,1890 10 93170250 rs7081569 C G 4618.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.231 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4647,462,0 10 93608142 rs3758499 G A 1917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-1.39;SOR=0.605 GT:AD:DP:GQ:PL 0/1:80,78:158:99:1946,0,2023 10 93617306 rs1340420 A G 950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.444;SOR=0.478 GT:AD:DP:GQ:PL 0/1:33,45:78:99:979,0,700 10 93752074 rs112721454 GT G 295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.834;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.58;ReadPosRankSum=-0.038;SOR=0.569 GT:AD:DP:GQ:PL 0/1:32,21:75:99:324,0,803 10 93771192 rs2676802 T A 243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.96;ReadPosRankSum=-0.127;SOR=0.869 GT:AD:DP:GQ:PL 0/1:23,12:35:99:272,0,596 10 93776240 rs11400019 C CT 607.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=0.084;SOR=0.506 GT:AD:DP:GQ:PL 0/1:35,31:79:99:645,0,643 10 93778520 rs140447601 CT C 545.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.82;QD=6.35;ReadPosRankSum=2.075;SOR=0.854 GT:AD:DP:GQ:PL 0/1:53,33:86:99:583,0,1251 10 93841227 rs2676811 A G 4706.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4735,463,0 10 93851714 rs1229578 T C 590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.03;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=1.11;SOR=0.48 GT:AD:DP:GQ:PL 0/1:30,28:58:99:619,0,689 10 93999850 rs3824734 A G 4260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=-0.37;SOR=0.582 GT:AD:DP:GQ:PL 0/1:133,169:302:99:4289,0,3465 10 94070878 rs142934556 CTT C 1571.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=5.2;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.884;QD=22.14;ReadPosRankSum=-0.972;SOR=0.275 GT:AD:DP:GQ:PL 0/1:30,41:71:99:1609,0,1026 10 94594565 rs2490741 G A 1933.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1962,189,0 10 94608319 rs139196824 C T 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.543;SOR=1.005 GT:AD:DP:GQ:PL 0/1:72,71:143:99:1641,0,1806 10 94816807 rs60582805 G GA 1894.73 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=1.217 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1932,177,0 10 94822686 rs55843714 C T 3823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-1.519;SOR=0.787 GT:AD:DP:GQ:PL 0/1:222,158:380:99:3852,0,5831 10 95072906 rs787666 T C 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=5.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.226;SOR=1.056 GT:AD:DP:GQ:PL 0/1:86,98:184:99:2503,0,2088 10 95085594 rs34689790 T C 1821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.799;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=-1.076;SOR=0.858 GT:AD:DP:GQ:PL 0/1:113,76:189:99:1850,0,2824 10 95111492 rs12256834 T A 1600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=5.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=1.447;SOR=0.389 GT:AD:DP:GQ:PL 0/1:96,76:172:99:1629,0,2308 10 95113617 rs12267946 A G 978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.458;SOR=0.733 GT:AD:DP:GQ:PL 0/1:43,44:87:99:1007,0,1066 10 95148835 rs17108594 T C 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=-1.03;SOR=0.78 GT:AD:DP:GQ:PL 0/1:116,89:205:99:1926,0,2728 10 95163809 rs12262721 G T 1565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.543;SOR=0.804 GT:AD:DP:GQ:PL 0/1:68,65:133:99:1594,0,1723 10 95216623 rs701882 A G 526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=-0.308;SOR=0.71 GT:AD:DP:GQ:PL 0/1:31,27:58:99:555,0,729 10 95259979 rs3740370 C G 2875.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2904,296,0 10 95262981 rs7080916 A G 4589.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4618,461,0 10 95279506 rs2293277 A T 3673.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3702,369,0 10 95372734 rs1131978 G A 2984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.169;SOR=0.74 GT:AD:DP:GQ:PL 0/1:106,126:232:99:3013,0,2789 10 95395247 rs616522 A G 1866.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=1.571 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1895,179,0 10 95400694 rs45522236 G T 706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=0.237;SOR=0.555 GT:AD:DP:GQ:PL 0/1:40,34:74:99:735,0,1026 10 95405814 rs1409332 C A 1197.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.62;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1226,134,0 10 95454681 rs2275438 G C 1139.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1168,120,0 10 95458141 rs11187597 A G 1986.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2015,192,0 10 95459817 rs726817 C T 1833.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=1 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1862,195,0 10 95549836 rs368174638 C CTT 1287.73 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=36.79;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,35:57:70:1272,70,0 10 95552653 rs1111820 T C 3185.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3214,326,0 10 96039597 rs2274224 G C 1145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=0.864;SOR=0.651 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1174,0,1453 10 96058298 rs3765524 C T 2271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.447;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=2.633;SOR=0.695 GT:AD:DP:GQ:PL 0/1:104,100:204:99:2300,0,2335 10 96058433 rs17516758 G A 927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.349;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.981;SOR=0.782 GT:AD:DP:GQ:PL 0/1:54,39:93:99:956,0,1304 10 96066341 rs2274223 A G 1585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.115;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=1.259;SOR=0.65 GT:AD:DP:GQ:PL 0/1:60,65:125:99:1614,0,1376 10 96084800 . G C 1842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.32;ClippingRankSum=0;DP=169;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.695;SOR=0.832 GT:AD:DP:GQ:PL 0/1:89,80:169:99:1871,0,2182 10 96098373 rs17517578 C T 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=0.51;SOR=0.657 GT:AD:DP:GQ:PL 0/1:81,63:144:99:1341,0,1979 10 96100257 rs34713827 TA T 139.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.256;ClippingRankSum=-0;DB;DP=29;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=7.76;ReadPosRankSum=-1.63;SOR=0.569 GT:AD:DP:GQ:PGT:PID:PL 0/1:9,9:18:99:0|1:96100244_A_C:177,0,191 10 96162516 . CGGAGGAGGCTGACGAGGA C 2121.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.031;ClippingRankSum=0;DP=303;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.302;QD=8.62;ReadPosRankSum=3.252;SOR=0.693 GT:AD:DP:GQ:PL 0/1:154,92:246:99:2159,0,7634 10 96701601 rs9332119 G C 1135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=6.341;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=-2.102;SOR=0.275 GT:AD:DP:GQ:PL 0/1:38,41:79:99:1164,0,1172 10 96702047 rs1799853 C T 3313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.5;MQ=59.05;MQRankSum=-1.18;QD=9.83;ReadPosRankSum=-0.367;SOR=0.719 GT:AD:DP:GQ:PL 0/1:184,153:337:99:3342,0,4277 10 96798749 rs10509681 T C 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-1.59;SOR=0.63 GT:AD:DP:GQ:PL 0/1:50,70:120:99:1607,0,1139 10 96827030 rs11572080 C T 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.03;SOR=0.713 GT:AD:DP:GQ:PL 0/1:138,114:252:99:2433,0,3217 10 96954298 rs591157 A G 5683.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5712,563,0 10 96954360 rs11188225 T A 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.816;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.45;SOR=0.697 GT:AD:DP:GQ:PL 0/1:96,92:188:99:2159,0,2191 10 96966954 rs58102963 GT G 2968.73 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;QD=26.99;SOR=1.835 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3006,330,0 10 96998458 rs2901832 C T 470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=0.748;SOR=0.779 GT:AD:DP:GQ:PL 0/1:27,23:50:99:499,0,683 10 97023630 rs2296961 T C 1549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.735;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=5.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.65;ReadPosRankSum=-0.535;SOR=0.357 GT:AD:DP:GQ:PL 0/1:41,58:99:99:1578,0,993 10 97127462 rs6583998 C A 842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-2.713;SOR=0.502 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,40:68:99:0|1:97127462_C_A:871,0,687 10 97141523 rs2274490 G A 1162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.426;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=3.011;SOR=0.693 GT:AD:DP:GQ:PL 0/1:42,53:95:99:1191,0,1038 10 97192324 rs943542 A G 4323.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.357 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4352,423,0 10 97369939 rs10882640 C T 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.15;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.513;SOR=0.474 GT:AD:DP:GQ:PL 0/1:52,62:114:99:1317,0,1300 10 97369983 . C T 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.638;SOR=0.692 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1628,0,1697 10 97388162 rs2275272 G A 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.003;SOR=0.546 GT:AD:DP:GQ:PL 0/1:113,89:202:99:2000,0,2632 10 97447373 rs10786229 A T 2433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.26;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=-2.685;SOR=0.595 GT:AD:DP:GQ:PL 0/1:75,100:175:99:2462,0,1773 10 97604406 rs3176886 A G 1989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.271;SOR=0.639 GT:AD:DP:GQ:PL 0/1:62,83:145:99:2018,0,1541 10 97772358 rs17383738 A G 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.732;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.585;SOR=0.653 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1218,0,1019 10 97772496 rs10748652 T A 426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.783;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.547;SOR=1.158 GT:AD:DP:GQ:PL 0/1:19,19:38:99:455,0,421 10 97920099 rs67530050 T TC 6859.73 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=37.9;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6897,559,0 10 97920278 rs41291608 T C 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.862;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.298;SOR=0.961 GT:AD:DP:GQ:PL 0/1:67,58:125:99:1471,0,1711 10 97990583 rs727852 A G 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=1.465;SOR=0.763 GT:AD:DP:GQ:PL 0/1:72,59:131:99:1279,0,1659 10 98078127 rs7081385 C T 5755.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5784,588,0 10 98078239 rs6584066 A G 6487.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6516,655,0 10 98133483 rs61741039 G A 1792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.617;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-2.872;SOR=0.598 GT:AD:DP:GQ:PL 0/1:96,73:169:99:1821,0,2331 10 98287150 rs3789958 A G 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.048;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.437;SOR=1.127 GT:AD:DP:GQ:PL 0/1:48,42:90:99:1172,0,1113 10 98287261 rs3789957 G C 1263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.432;SOR=0.797 GT:AD:DP:GQ:PL 0/1:51,59:110:99:1292,0,1154 10 98287792 rs12779720 G T 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.29;SOR=0.494 GT:AD:DP:GQ:PL 0/1:49,59:108:99:1418,0,1086 10 98303971 rs150892649 G GA 1350.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.44;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.642;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.056;QD=12.51;ReadPosRankSum=0.978;SOR=1.019 GT:AD:DP:GQ:PL 0/1:56,52:108:99:1388,0,1440 10 98319503 rs3818390 A T 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.006;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.465;SOR=0.515 GT:AD:DP:GQ:PL 0/1:18,27:45:99:567,0,462 10 98369536 rs3748236 A G 2313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=4.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-1.075;SOR=0.485 GT:AD:DP:GQ:PL 0/1:125,97:222:99:2342,0,2926 10 98380137 rs12784975 T C 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.211;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.765;SOR=0.653 GT:AD:DP:GQ:PL 0/1:98,78:176:99:1976,0,2358 10 98380277 rs3748234 C T 1965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=-0.476;SOR=0.618 GT:AD:DP:GQ:PL 0/1:55,82:137:99:1994,0,1264 10 98386558 rs4344416 G A 6679.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6708,699,0 10 98469507 rs3748229 C A 3636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.13;SOR=0.599 GT:AD:DP:GQ:PL 0/1:148,146:294:99:3665,0,3770 10 98808866 rs2805588 C G 5532.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5561,569,0 10 98820528 rs33970910 C G 2850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-0.892;SOR=0.578 GT:AD:DP:GQ:PL 0/1:101,120:221:99:2879,0,2338 10 98995076 rs946981 A G 1330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.057;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.552;SOR=0.98 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1359,0,1403 10 99006083 rs13439 G A 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.084;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=1.235;SOR=0.972 GT:AD:DP:GQ:PL 0/1:49,33:82:99:761,0,1082 10 99019144 rs3740522 C T 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.78;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.865;SOR=0.532 GT:AD:DP:GQ:PL 0/1:64,55:119:99:1242,0,1578 10 99019177 rs2253301 A G 4228.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4257,432,0 10 99024572 rs793524 A G 480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.63;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.77;ReadPosRankSum=1.119;SOR=0.675 GT:AD:DP:GQ:PL 0/1:44,27:71:99:509,0,990 10 99025611 rs10882884 T A 2565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.853;SOR=0.784 GT:AD:DP:GQ:PL 0/1:85,107:192:99:2594,0,1937 10 99094083 rs181573119 C T 3745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-0.506;SOR=0.618 GT:AD:DP:GQ:PL 0/1:126,155:281:99:3774,0,3223 10 99116903 rs1048445 C T 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=4.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=0.254;SOR=0.452 GT:AD:DP:GQ:PL 0/1:56,55:111:99:1209,0,1403 10 99118382 rs2297988 T C 648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=1.687;SOR=0.365 GT:AD:DP:GQ:PL 0/1:39,32:71:99:677,0,1026 10 99125949 rs2275580 C T 2300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.956;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.303;SOR=0.729 GT:AD:DP:GQ:PL 0/1:108,95:203:99:2329,0,2531 10 99126249 rs2275581 G A 3252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.64;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-1.189;SOR=0.919 GT:AD:DP:GQ:PL 0/1:120,132:252:99:3281,0,2749 10 99141205 rs2275089 A G 1362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=4.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.033;SOR=0.671 GT:AD:DP:GQ:PL 0/1:71,64:135:99:1391,0,1692 10 99141484 rs12218483 C T 1407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.02;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-1.241;SOR=0.752 GT:AD:DP:GQ:PL 0/1:74,68:142:99:1436,0,1617 10 99148151 rs2275090 A G 2701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=4.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-1.339;SOR=0.944 GT:AD:DP:GQ:PL 0/1:90,110:200:99:2730,0,2278 10 99155984 rs3814553 G A 924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=-0.23;SOR=0.811 GT:AD:DP:GQ:PL 0/1:57,45:102:99:953,0,1312 10 99160046 rs2297668 C T 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=1.598;SOR=0.602 GT:AD:DP:GQ:PL 0/1:53,55:108:99:1317,0,1253 10 99160152 rs1048442 A G 2268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.123;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=0.851;SOR=0.583 GT:AD:DP:GQ:PL 0/1:81,87:168:99:2297,0,1852 10 99160965 rs2275091 A G 6956.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=1.159 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6985,678,0 10 99219885 rs2152092 G A 2120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.103;SOR=0.584 GT:AD:DP:GQ:PL 0/1:116,99:215:99:2149,0,2674 10 99220707 rs3740526 C T 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.158;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.977;SOR=0.784 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1464,0,1375 10 99229489 rs11592973 G A 440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.8;ReadPosRankSum=-1.022;SOR=0.527 GT:AD:DP:GQ:PL 0/1:50,26:76:99:469,0,1277 10 99240758 rs2275586 G C 2198.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2227,225,0 10 99337572 rs7094973 G A 3212.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3241,318,0 10 99376092 rs3814555 T C 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=0.135;SOR=0.703 GT:AD:DP:GQ:PL 0/1:67,101:168:99:2426,0,1579 10 99376152 rs3814556 A G 1751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.345;SOR=0.78 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1780,0,1616 10 99410790 rs7915721 T C 858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.478;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=1;SOR=0.693 GT:AD:DP:GQ:PL 0/1:48,34:82:99:887,0,1263 10 99422648 rs7905087 A G 432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.09;ReadPosRankSum=0.929;SOR=0.74 GT:AD:DP:GQ:PL 0/1:37,24:61:99:461,0,865 10 99439541 rs2275047 G C 2874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.195;SOR=0.621 GT:AD:DP:GQ:PL 0/1:150,120:270:99:2903,0,4009 10 99473666 rs11189342 C G 456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.405;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=7.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.73;ReadPosRankSum=-1.125;SOR=2.494 GT:AD:DP:GQ:PL 0/1:15,16:31:99:485,0,388 10 99498234 rs3818876 G A 4508.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.486 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4537,447,0 10 99504630 rs10882993 G T 8573.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8602,864,0 10 99510068 rs3750614 G T 3427.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=1.456 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3456,357,0 10 99531571 rs11815012 C G 4302.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.46;ReadPosRankSum=1.931;SOR=0.646 GT:AD:DP:GQ:PL 1/1:10,159:169:99:4331,147,0 10 99625319 rs56007204 C T 2589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.308;SOR=0.854 GT:AD:DP:GQ:PL 0/1:114,105:219:99:2618,0,3137 10 99664456 rs7068503 T C 3320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.335;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=3.404;SOR=0.732 GT:AD:DP:GQ:PL 0/1:103,133:236:99:3349,0,2349 10 99696003 rs35027739 G A 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.367;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.59;SOR=0.916 GT:AD:DP:GQ:PL 0/1:150,117:267:99:2522,0,3492 10 99968989 rs143741446 A G 1606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.734;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-1.138;SOR=0.605 GT:AD:DP:GQ:PL 0/1:63,60:123:99:1635,0,1656 10 99969475 rs34494334 A C 5464.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.12;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5493,495,0 10 99971121 rs202083729 C G 885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.169;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=-0.578;SOR=0.614 GT:AD:DP:GQ:PL 0/1:68,39:107:99:914,0,1660 10 99991408 rs1952061 A G 4243.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4272,426,0 10 99995773 rs61875307 C T 3176.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3205,308,0 10 100013438 rs17524355 C T 6695.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6724,675,0 10 100013563 rs7086391 C T 3656.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3685,383,0 10 100144782 rs2296441 C T 3233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.78;SOR=0.778 GT:AD:DP:GQ:PL 0/1:145,145:290:99:3262,0,3402 10 100179851 rs2296436 T C 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=4.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.327;SOR=0.58 GT:AD:DP:GQ:PL 0/1:60,67:127:99:1434,0,1259 10 100183570 rs2296434 G C 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.068;SOR=0.848 GT:AD:DP:GQ:PL 0/1:110,94:204:99:2340,0,2980 10 101090428 rs2862600 T G 7088.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.83;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.133;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.82;ReadPosRankSum=0.929;SOR=0.328 GT:AD:DP:GQ:PL 1/1:1,215:216:99:7117,637,0 10 101124157 rs368559277 CT C 37.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.645;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=7.156;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.852;QD=0.66;ReadPosRankSum=-1.215;SOR=1.894 GT:AD:DP:GQ:PL 0/1:46,11:60:75:75,0,1103 10 101295274 . GGGC G 87.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=1.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.07;ReadPosRankSum=-0.61;SOR=0.354 GT:AD:DP:GQ:PL 0/1:74,8:82:99:125,0,2791 10 101445591 rs3740078 A C 1394.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1423,147,0 10 101451259 rs11190245 T C 4115.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4144,389,0 10 101473218 rs2231687 A G 3778.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3807,409,0 10 101544447 rs927344 A T 5618.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5647,569,0 10 101604207 rs3740066 C T 4775.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.104;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.43;ReadPosRankSum=-0.466;SOR=0.359 GT:AD:DP:GQ:PL 1/1:1,167:168:99:4804,493,0 10 101639796 rs2255901 G A 5326.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5355,515,0 10 101639877 rs11190305 A C 4792.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4821,448,0 10 101645498 rs2490763 T C 5115.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5144,516,0 10 101654696 rs3758394 T C 2389.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2418,243,0 10 101657880 rs7919323 G A 3560.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3589,348,0 10 101715899 rs2862923 G A 6822.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6851,669,0 10 101841153 rs10883439 A G 4204.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.11;SOR=1.972 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4233,381,0 10 101912064 rs2862954 T C 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=0.503;SOR=1.203 GT:AD:DP:GQ:PL 0/1:32,46:78:99:1162,0,703 10 101977883 rs2230804 C T 630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.86;ReadPosRankSum=-0.06;SOR=0.779 GT:AD:DP:GQ:PL 0/1:61,31:92:99:659,0,1587 10 102056970 rs2278841 A G 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.757;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=0.061;SOR=0.775 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,43:118:99:0|1:102056970_A_G:1580,0,3578 10 102056972 rs2278840 G T 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.298;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.82;SOR=0.768 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,43:116:99:0|1:102056970_A_G:1580,0,3578 10 102107251 rs1054411 C G 1093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.06;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=0.04;SOR=0.704 GT:AD:DP:GQ:PL 0/1:66,55:121:99:1122,0,1573 10 102116311 rs2234970 A C 1472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.597;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.039;SOR=0.739 GT:AD:DP:GQ:PL 0/1:70,55:125:99:1501,0,1816 10 102295836 rs2295778 C G 2085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.224;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.792;SOR=0.77 GT:AD:DP:GQ:PL 0/1:102,81:183:99:2114,0,2851 10 102506070 rs4472867 G C 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=0.442;SOR=0.582 GT:AD:DP:GQ:PL 0/1:45,47:92:99:1141,0,1203 10 102673063 rs3802725 G T 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.655;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.334;SOR=0.638 GT:AD:DP:GQ:PL 0/1:136,112:248:99:2539,0,3769 10 102684380 rs10883563 C A 2717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.099;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.207;SOR=0.597 GT:AD:DP:GQ:PL 0/1:104,119:223:99:2746,0,2687 10 102738766 rs118166648 T C 2108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.46;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=9.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=1.46;SOR=0.7 GT:AD:DP:GQ:PL 0/1:111,88:199:99:2137,0,2911 10 102739143 . AT A 250.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.402;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.996;QD=2.67;ReadPosRankSum=-1.102;SOR=1.015 GT:AD:DP:GQ:PL 0/1:70,24:106:99:288,0,1510 10 102743660 . A C 330.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.452;ClippingRankSum=0;DP=214;ExcessHet=3.0103;FS=275.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.83;ReadPosRankSum=-5.187;SOR=6.664 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,27:181:99:0|1:102743660_A_C:359,0,8191 10 102743661 . G C 318.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.523;ClippingRankSum=0;DP=215;ExcessHet=3.0103;FS=269.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.75;ReadPosRankSum=-4.934;SOR=6.592 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,26:182:99:0|1:102743660_A_C:347,0,8348 10 102743666 . A C 220.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0;DP=216;ExcessHet=3.0103;FS=199.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.21;ReadPosRankSum=-3.622;SOR=6.089 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,20:183:99:0|1:102743660_A_C:249,0,8547 10 102743669 . A C 144.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.617;ClippingRankSum=0;DP=214;ExcessHet=3.0103;FS=177.36;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.8;ReadPosRankSum=-3.733;SOR=5.889 GT:AD:DP:GQ:PGT:PID:PL 0/1:162,18:180:99:0|1:102743660_A_C:173,0,8539 10 102744331 rs11591349 A T 2897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.971;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=4.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-1.033;SOR=0.797 GT:AD:DP:GQ:PL 0/1:110,114:224:99:2926,0,2561 10 102766574 rs807024 A G 4899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0;DB;DP=441;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-1.787;SOR=0.822 GT:AD:DP:GQ:PL 0/1:227,214:441:99:4928,0,5571 10 102770082 rs807023 T G 9201.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,312:312:99:9230,935,0 10 102770293 rs71013480 T TGCTGCG 6886.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.5;MQ=61.04;MQRankSum=6.457;QD=18.66;ReadPosRankSum=0.314;SOR=0.751 GT:AD:DP:GQ:PL 0/1:186,183:369:99:6924,0,7101 10 102770327 rs807022 A G 11998.8 PASS AC=2;AF=1;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=31.91;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,376:376:99:12027,1128,0 10 102778967 rs35038258 G A 1723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.206;SOR=0.875 GT:AD:DP:GQ:PL 0/1:97,77:174:99:1752,0,2377 10 102780354 rs77484072 TG T 2058.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.395;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.835;QD=16.21;ReadPosRankSum=0.192;SOR=0.796 GT:AD:DP:GQ:PL 0/1:57,70:127:99:2096,0,1615 10 102783678 rs6584410 T C 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.035;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-2.386;SOR=0.861 GT:AD:DP:GQ:PL 0/1:83,79:162:99:2058,0,2023 10 102824349 rs807037 G C 2595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=0.407;SOR=0.502 GT:AD:DP:GQ:PL 0/1:115,100:215:99:2624,0,3140 10 103281634 rs6584429 C G 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.15;ReadPosRankSum=0.65;SOR=0.555 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,51:84:99:0|1:103281634_C_G:1637,0,1007 10 103340056 rs3730477 G A 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.767;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.05;SOR=0.686 GT:AD:DP:GQ:PL 0/1:73,62:135:99:1464,0,1633 10 103340144 rs3730476 A G 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.587;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.377;SOR=0.684 GT:AD:DP:GQ:PL 0/1:75,64:139:99:1429,0,1710 10 103340179 rs3730475 A G 1216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.459;SOR=0.55 GT:AD:DP:GQ:PL 0/1:51,51:102:99:1245,0,1242 10 103361088 rs7874 C T 2035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.67;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=4.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.22;SOR=1.002 GT:AD:DP:GQ:PL 0/1:96,86:182:99:2064,0,2559 10 103368654 rs7006 T C 1292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=-1.845;SOR=0.482 GT:AD:DP:GQ:PL 0/1:82,62:144:99:1321,0,1916 10 103454402 rs61382490 A T 4377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.258;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-0.657;SOR=0.801 GT:AD:DP:GQ:PL 0/1:165,170:335:99:4406,0,3812 10 103567665 rs372242564 GA G 210.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.209;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0;QD=2.42;ReadPosRankSum=0.366;SOR=0.675 GT:AD:DP:GQ:PL 0/1:66,21:106:99:248,0,1527 10 103717493 rs376923161 T TA 728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=0.553;QD=19.18;ReadPosRankSum=0.829;SOR=1.179 GT:AD:DP:GQ:PL 0/1:6,32:53:72:711,0,72 10 103904763 rs11357964 TC T 2942.73 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2980,300,0 10 103991381 rs2281983 G A 3395.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3424,332,0 10 104128954 rs7902882 T A 1778.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.532 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1807,177,0 10 104136469 rs2180707 T C 3326.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3355,341,0 10 104140350 rs11191274 G A 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.274;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.534;SOR=0.706 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1463,0,1607 10 104157727 rs4919632 C T 2887.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=1 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2916,306,0 10 104159196 rs4919633 A G 9598.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9627,930,0 10 104160434 rs4919634 A G 7445.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7474,759,0 10 104160959 rs11574851 C T 3094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.618;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.467;SOR=0.597 GT:AD:DP:GQ:PL 0/1:161,127:288:99:3123,0,3988 10 104229785 rs41306870 C T 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=5.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=-2.141;SOR=0.382 GT:AD:DP:GQ:PL 0/1:95,67:162:99:1550,0,2556 10 104231054 rs11191295 A G 3305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.273;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.56;ReadPosRankSum=0.402;SOR=0.739 GT:AD:DP:GQ:PL 0/1:101,126:227:99:3334,0,2594 10 104232716 rs3740415 G A 1004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-1.734;SOR=0.869 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1033,0,837 10 104244139 rs2296582 G T 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=7.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.49;ReadPosRankSum=-1.221;SOR=1.445 GT:AD:DP:GQ:PL 0/1:48,72:120:99:2007,0,1236 10 104264107 rs2274351 C T 2724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-1.549;SOR=0.813 GT:AD:DP:GQ:PL 0/1:146,120:266:99:2753,0,3614 10 104387019 rs12414407 T C 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.725;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=1.149;SOR=1.099 GT:AD:DP:GQ:PL 0/1:45,50:95:99:1306,0,1055 10 104389932 rs4917980 T G 3157.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3186,335,0 10 104572963 rs284860 T C 3631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.629;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.21;SOR=0.737 GT:AD:DP:GQ:PL 0/1:170,140:310:99:3660,0,4199 10 104573017 rs284859 G T 3531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.233;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-2.61;SOR=0.694 GT:AD:DP:GQ:PL 0/1:175,148:323:99:3560,0,4069 10 104592249 rs4919686 A C 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.137;SOR=0.454 GT:AD:DP:GQ:PL 0/1:35,46:81:99:1053,0,866 10 104596924 rs6163 C A 816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.961;SOR=0.811 GT:AD:DP:GQ:PL 0/1:40,34:74:99:845,0,1015 10 104596981 rs6162 G A 679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.908;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=0.767;SOR=0.563 GT:AD:DP:GQ:PL 0/1:41,34:75:99:708,0,1114 10 104638723 rs11191439 T C 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.897;SOR=0.608 GT:AD:DP:GQ:PL 0/1:65,80:145:99:1765,0,1457 10 104678801 rs117691462 C T 2157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=1.281;SOR=0.824 GT:AD:DP:GQ:PL 0/1:81,75:156:99:2186,0,2385 10 104809614 . A G 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=4.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.84;SOR=0.365 GT:AD:DP:GQ:PL 0/1:52,58:110:99:1317,0,1295 10 104814162 rs2275271 T C 2069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.171;SOR=0.77 GT:AD:DP:GQ:PL 0/1:78,90:168:99:2098,0,1692 10 104836047 rs943036 T C 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.804;SOR=0.711 GT:AD:DP:GQ:PL 0/1:69,80:149:99:1846,0,1611 10 104836853 rs35647154 C T 1695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.244;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=6.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.74;ReadPosRankSum=-0.163;SOR=1.107 GT:AD:DP:GQ:PL 0/1:117,77:194:99:1724,0,2875 10 104849468 rs3740387 G A 2445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=1.245;SOR=0.836 GT:AD:DP:GQ:PL 0/1:114,107:221:99:2474,0,2796 10 105108455 rs4917387 T C 1274.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.12;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1303,139,0 10 105110740 rs60968810 A AGGAGGC 8764.73 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.89;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,191:191:99:8802,587,0 10 105194086 rs2986014 C T 2498.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2527,249,0 10 105201565 rs2281861 G A 4306.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.82;SOR=2.11 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,94:94:99:1|1:105201565_G_A:4335,301,0 10 105201577 rs2281860 C T 4430.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.6;SOR=1.848 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,104:104:99:1|1:105201565_G_A:4459,313,0 10 105204454 rs942900 T C 3303.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3332,345,0 10 105205302 rs7831 A C 4228.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4257,399,0 10 105215016 rs2986016 A G 6556.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=1.228 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6585,630,0 10 105218252 rs2986017 A G 8195.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8224,801,0 10 105218359 rs2986018 T C 8740.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8769,881,0 10 105233110 rs2986035 C T 8364.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8393,795,0 10 105344451 rs11191737 G A 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=6.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=2.153;SOR=1.05 GT:AD:DP:GQ:PL 0/1:77,68:145:99:1587,0,2056 10 105344756 rs2236209 T C 6899.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6928,657,0 10 105361816 rs4918031 T G 7009.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,219:219:99:7038,657,0 10 105362104 rs11191741 G A 2515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.119;SOR=0.733 GT:AD:DP:GQ:PL 0/1:105,105:210:99:2544,0,2725 10 105362209 rs4917396 T C 5606.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.18;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5635,507,0 10 105363289 rs3740471 T C 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.736;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.507;SOR=0.854 GT:AD:DP:GQ:PL 0/1:99,81:180:99:2104,0,2522 10 105484018 rs45564336 T C 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-1.749;SOR=0.87 GT:AD:DP:GQ:PL 0/1:24,30:54:99:711,0,521 10 105657316 rs10786775 G C 3006.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.37;SOR=1.967 GT:AD:DP:GQ:PL 1/1:0,85:85:99:3035,255,0 10 105659826 rs2487999 T C 4793.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4822,460,0 10 105727656 rs67597452 AAG A 2283.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.514;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.553;QD=17.17;ReadPosRankSum=0.472;SOR=0.915 GT:AD:DP:GQ:PL 0/1:72,61:133:99:2321,0,2816 10 105762591 rs805657 G A 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.31;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.539;SOR=0.781 GT:AD:DP:GQ:PL 0/1:65,68:133:99:1599,0,1631 10 105796399 rs2274098 G C 5353.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5382,510,0 10 105796819 rs2476958 A G 3978.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4007,407,0 10 105797378 rs2282437 G A 4835.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4864,479,0 10 105798872 rs2274100 T C 3408.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3437,354,0 10 105799216 rs2296219 G T 5637.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=1.265 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5666,568,0 10 105801253 rs4918079 G A 3929.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.67;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3958,422,0 10 105810400 rs805722 T C 2944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.931;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=2.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.887;SOR=0.545 GT:AD:DP:GQ:PL 0/1:141,119:260:99:2973,0,3417 10 105815116 rs17821926 A G 1602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.765;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=7.829;MLEAC=1;MLEAF=0.5;MQ=62.33;MQRankSum=4.414;QD=15.26;ReadPosRankSum=-0.167;SOR=1.222 GT:AD:DP:GQ:PL 0/1:42,63:105:99:1631,0,946 10 105816916 rs805698 C T 4655.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4684,453,0 10 105817891 rs11191910 G A 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.053;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.671;SOR=0.626 GT:AD:DP:GQ:PL 0/1:106,100:206:99:2325,0,2294 10 105819956 rs805701 G A 4015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.238;SOR=0.733 GT:AD:DP:GQ:PL 0/1:140,176:316:99:4044,0,3376 10 105824333 rs805708 G A 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.897;SOR=0.976 GT:AD:DP:GQ:PL 0/1:67,76:143:99:1881,0,1634 10 106907440 rs791125 C T 1598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.802;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=6.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-0.428;SOR=0.946 GT:AD:DP:GQ:PL 0/1:90,73:163:99:1627,0,2097 10 108439103 rs821929 A C 1704.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.5;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1733,185,0 10 108466412 rs2756231 C T 2845.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.585 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2874,286,0 10 111637635 rs2273740 A C 2312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.684;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.026;SOR=0.84 GT:AD:DP:GQ:PL 0/1:111,91:202:99:2341,0,2674 10 111878510 rs12268910 T G 1300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.369;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-1.755;SOR=1.053 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1329,0,1191 10 112266771 rs1889567 C T 3088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.379;SOR=0.609 GT:AD:DP:GQ:PL 0/1:121,130:251:99:3117,0,2948 10 112266822 rs1889566 G A 11814.8 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,264:264:99:1|1:112266822_G_A:11843,795,0 10 112266823 rs1889565 C T 11814.8 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,264:264:99:1|1:112266822_G_A:11843,795,0 10 112343591 rs11195199 G A 1051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.27;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=1.142;SOR=0.616 GT:AD:DP:GQ:PL 0/1:37,43:80:99:1080,0,1031 10 112343923 rs11195200 T C 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-1.436;SOR=0.861 GT:AD:DP:GQ:PL 0/1:36,28:64:99:644,0,862 10 112360315 rs35608195 GT G 106.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.85;ReadPosRankSum=0.889;SOR=0.269 GT:AD:DP:GQ:PL 0/1:11,11:27:99:144,0,227 10 112361707 rs192711356 A G 1324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.423;SOR=0.6 GT:AD:DP:GQ:PL 0/1:64,56:120:99:1353,0,1564 10 112361870 rs2419565 A G 3918.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.66;QD=30.62;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3947,384,0 10 112572458 rs1417635 G C 7333.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7362,685,0 10 112590810 rs7070640 G C 3881.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3910,381,0 10 112595719 rs942077 G C 2314.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.3 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2343,231,0 10 112641053 rs7081726 A G 3527.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=1.322 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3556,343,0 10 113917085 rs2254537 T A 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.47;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=0.045;SOR=0.766 GT:AD:DP:GQ:PL 0/1:45,51:96:99:1276,0,1082 10 113920465 rs2277207 G A 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.695;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.026;SOR=0.775 GT:AD:DP:GQ:PL 0/1:66,53:119:99:1332,0,1581 10 113935379 rs10787428 T C 1139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-1.127;SOR=0.685 GT:AD:DP:GQ:PL 0/1:43,53:96:99:1168,0,918 10 113940329 rs2792751 T C 738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-0.007;SOR=0.745 GT:AD:DP:GQ:PL 0/1:39,37:76:99:767,0,873 10 114053546 rs726009 C G 1964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.673;SOR=0.713 GT:AD:DP:GQ:PL 0/1:88,89:177:99:1993,0,1972 10 114059330 rs72180186 TCTCTGTTTTC T 3727.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.93;ReadPosRankSum=-0.567;SOR=0.718 GT:AD:DP:GQ:PL 0/1:75,95:170:99:3765,0,4217 10 114154815 rs11195943 C T 2255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=1.163;SOR=0.824 GT:AD:DP:GQ:PL 0/1:93,102:195:99:2284,0,1970 10 114169276 rs3736946 A G 1214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.528;SOR=0.503 GT:AD:DP:GQ:PL 0/1:60,55:115:99:1243,0,1524 10 114186624 rs2256368 G A 1962.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1991,201,0 10 115334124 rs3740530 C T 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=4.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.301;SOR=0.768 GT:AD:DP:GQ:PL 0/1:32,45:77:99:1022,0,734 10 115341753 rs2245056 G A 3539.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.84;ReadPosRankSum=0.979;SOR=0.867 GT:AD:DP:GQ:PL 1/1:2,135:137:99:3568,346,0 10 115341846 rs2245058 G A 4687.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.74;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4716,505,0 10 115348726 rs3832698 GA G 3983.73 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=39.84;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,100:100:99:4021,301,0 10 115350597 rs1885434 G A 3448.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.219 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3477,345,0 10 115352005 rs11196389 A G 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.294;SOR=0.69 GT:AD:DP:GQ:PL 0/1:71,81:152:99:1839,0,1605 10 115375528 rs11196397 C A 604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.74;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=0.246;SOR=0.711 GT:AD:DP:GQ:PL 0/1:35,29:64:99:633,0,859 10 115381747 rs868738 G A 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.463;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.73;ReadPosRankSum=-1.231;SOR=0.648 GT:AD:DP:GQ:PL 0/1:127,81:208:99:1637,0,2766 10 115389356 rs2286736 G A 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.09;ReadPosRankSum=-0.455;SOR=0.601 GT:AD:DP:GQ:PGT:PID:PL 0/1:56,46:102:99:0|1:115389356_G_A:1771,0,2859 10 115389366 rs2286735 G A 1804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.71;ReadPosRankSum=-0.276;SOR=0.66 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,49:108:99:0|1:115389356_G_A:1833,0,2896 10 115393929 rs3189030 G A 894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.348;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=1.376;SOR=0.995 GT:AD:DP:GQ:PL 0/1:51,40:91:99:923,0,1156 10 115405615 rs3127106 T C 1958.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.62;QD=27.98;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1987,209,0 10 115405664 rs3121478 C T 1774.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.67;QD=27.73;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1803,192,0 10 115405703 rs372058440 G GAA,GAAA 796.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=61.26;QD=34.64;SOR=1.445 GT:AD:DP:GQ:PL 1/2:0,16,7:26:99:834,180,107,403,0,353 10 115410234 rs2185913 T C 894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.548;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.221;SOR=0.765 GT:AD:DP:GQ:PL 0/1:55,39:94:99:923,0,1260 10 115411614 rs2154028 A G 2042.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2071,210,0 10 115412686 rs3121488 G A 3261.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.93;SOR=1.192 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,86:86:99:1|1:115412686_G_A:3290,259,0 10 115412687 rs3127113 C T 1089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=4.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=1.816;SOR=0.385 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,48:86:99:0|1:115412686_G_A:1118,0,922 10 115417289 rs1891762 G A 2260.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2289,228,0 10 115422474 rs3127122 A G 474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.33;ReadPosRankSum=-1.755;SOR=0.779 GT:AD:DP:GQ:PL 0/1:31,26:57:99:503,0,701 10 115423094 rs12770981 G C 666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.361;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.134;SOR=0.685 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,27:59:99:0|1:115423094_G_C:695,0,810 10 115439530 rs28411397 G C 626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=0.102;SOR=1.143 GT:AD:DP:GQ:PL 0/1:42,30:72:99:655,0,1017 10 115439569 rs7921977 C T 1184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.203;SOR=0.642 GT:AD:DP:GQ:PL 0/1:58,52:110:99:1213,0,1407 10 115489152 rs2227310 C G 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.029;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.365;SOR=0.889 GT:AD:DP:GQ:PL 0/1:68,63:131:99:1577,0,1667 10 115489167 rs2227309 G A 1342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=1.07;SOR=0.724 GT:AD:DP:GQ:PL 0/1:65,57:122:99:1371,0,1594 10 115526177 rs10885500 A G 317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.865;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.3;ReadPosRankSum=-0.494;SOR=0.703 GT:AD:DP:GQ:PL 0/1:44,16:60:99:346,0,1081 10 115609915 rs3750898 C G 5512.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5541,535,0 10 115804036 rs1801252 A G 11429.8 PASS AC=2;AF=1;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.02;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,357:357:99:11458,1071,0 10 115805056 rs1801253 G C 7079.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.87;SOR=1.333 GT:AD:DP:GQ:PL 1/1:0,209:209:99:7108,628,0 10 116060194 rs3214266 A AG 11222.7 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=35.51;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,316:316:99:11260,951,0 10 116060387 rs2286396 T C 7669.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=1.174 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7698,720,0 10 116068176 rs581327 A G 3323.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3352,341,0 10 116073696 rs3813722 C T 6723.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6752,699,0 10 116091555 rs10787524 T C 4667.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=1.004 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4696,501,0 10 116100461 rs41300231 C T 4817.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4846,495,0 10 116203911 rs57563904 G GA 292.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.46;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.66;MQRankSum=1.535;QD=7.91;ReadPosRankSum=-0.312;SOR=0.623 GT:AD:DP:GQ:PL 0/1:16,21:46:99:330,0,310 10 116307504 rs2247528 A G 8534.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8563,847,0 10 116335246 rs985273 G A 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=2.259;SOR=0.725 GT:AD:DP:GQ:PL 0/1:122,93:215:99:2048,0,2929 10 116593175 rs11196939 C T 1516.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1545,144,0 10 116615045 rs3180654 T C 2900.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2929,294,0 10 116719543 rs7099565 G A 1955.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.79;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1984,217,0 10 116931101 rs3086141 C CTT 2330.73 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=43.98;SOR=1.402 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:116931101_C_CTT:2368,160,0 10 117075175 rs1953758 G A 4348.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4377,441,0 10 118231360 rs10736251 G A 6273.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.49;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,141:141:99:1|1:118231360_G_A:6302,427,0 10 118231363 rs1897519 A G 6273.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.81;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,140:140:99:1|1:118231360_G_A:6302,427,0 10 118231406 rs10749217 A C 1477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.644;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=5.82;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=1.28;SOR=0.346 GT:AD:DP:GQ:PL 0/1:50,67:117:99:1506,0,1196 10 118313265 rs2915748 T C 3571.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.06;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3600,395,0 10 118359548 rs3816355 T C 507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.322;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-0.482;SOR=1.508 GT:AD:DP:GQ:PL 0/1:28,20:48:99:536,0,667 10 118363642 rs3010501 T C 936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.621;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.006;SOR=0.84 GT:AD:DP:GQ:PL 0/1:40,41:81:99:965,0,872 10 118383463 rs56189579 A AG 2791.73 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.22;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2829,232,0 10 118383557 rs62623669 G C 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.424;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.48;QD=12.19;ReadPosRankSum=-0.419;SOR=0.846 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1491,0,1540 10 118397884 rs4751995 A G 549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.96;ReadPosRankSum=-0.378;SOR=0.4 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,14:29:99:0|1:118397884_A_G:578,0,908 10 118397894 rs4751996 A G 549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.022;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.73;ReadPosRankSum=0.494;SOR=0.602 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,15:31:99:0|1:118397884_A_G:578,0,908 10 118404620 rs2301179 A G 788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.925;SOR=0.641 GT:AD:DP:GQ:PL 0/1:32,37:69:99:817,0,683 10 118620459 rs11197835 A C 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.318;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=0.474;SOR=0.653 GT:AD:DP:GQ:PL 0/1:78,66:144:99:1771,0,1833 10 118891992 . GA G 193.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.465;QD=1.75;ReadPosRankSum=1.514;SOR=0.455 GT:AD:DP:GQ:PL 0/1:86,25:127:99:231,0,2118 10 119003564 rs363387 T G 2372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=-1.596;SOR=0.482 GT:AD:DP:GQ:PL 0/1:59,101:160:99:2401,0,1349 10 119014023 rs2072362 C T 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.41;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-1.101;SOR=0.553 GT:AD:DP:GQ:PL 0/1:79,64:143:99:1379,0,1782 10 119026566 rs363227 T C 464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.15;ReadPosRankSum=-0.033;SOR=0.807 GT:AD:DP:GQ:PL 0/1:41,24:65:99:493,0,926 10 119042761 rs363293 C T 3934.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3963,404,0 10 119133968 rs3814230 G C 3581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.865;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=3.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=1.509;SOR=0.94 GT:AD:DP:GQ:PL 0/1:120,129:249:99:3610,0,3293 10 119134058 rs3814229 T C 4087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.316;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=-1.352;SOR=0.66 GT:AD:DP:GQ:PL 0/1:127,153:280:99:4116,0,3107 10 119768551 rs7923321 C T 4389.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4418,450,0 10 120070427 rs4751651 G T 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.601;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-1.085;SOR=0.895 GT:AD:DP:GQ:PL 0/1:38,33:71:99:780,0,890 10 120070709 rs3213691 G A 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.305;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.091;SOR=0.775 GT:AD:DP:GQ:PL 0/1:49,49:98:99:1181,0,1149 10 120070843 rs34120011 G GA,GGA 1018.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.17;MQRankSum=0.323;QD=19.98;ReadPosRankSum=0.605;SOR=0.986 GT:AD:DP:GQ:PL 1/2:3,29,19:54:99:1056,443,625,668,0,998 10 120353843 rs8192524 G A 3932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=10.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.503;SOR=1.18 GT:AD:DP:GQ:PL 0/1:162,149:311:99:3961,0,4479 10 120353910 rs1613448 T C 11517.8 PASS AC=2;AF=1;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,375:375:99:11546,1125,0 10 120354472 rs938700 C T 4125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.124;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.833;SOR=0.613 GT:AD:DP:GQ:PL 0/1:186,167:353:99:4154,0,5157 10 120446114 rs12440 A G 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.324;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.756;SOR=0.763 GT:AD:DP:GQ:PL 0/1:29,32:61:99:784,0,578 10 120817450 rs10886375 A G 2934.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.13;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2963,258,0 10 120828969 rs7908387 A G 1318.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.47;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1347,144,0 10 120889022 rs3802739 T C 2568.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=28.23;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2597,272,0 10 120896027 rs11198799 G A 2440.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.3;QD=28.38;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2469,258,0 10 120917445 rs2275111 G A 4293.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4322,445,0 10 120919246 rs2181118 T C 4461.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4490,461,0 10 120920588 rs10749291 T C 2917.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.289 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2946,285,0 10 120931928 rs140311549 C A 1331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.074;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.857;SOR=0.74 GT:AD:DP:GQ:PL 0/1:56,57:113:99:1360,0,1251 10 120933324 rs3758609 G A 3574.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3603,366,0 10 121436362 rs196295 A G 10461.8 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,319:319:99:10490,956,0 10 121551581 rs2289306 A C 2043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=1.188;SOR=0.759 GT:AD:DP:GQ:PL 0/1:59,86:145:99:2072,0,1343 10 121579040 rs17099318 T C 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.659;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.455;SOR=0.792 GT:AD:DP:GQ:PL 0/1:49,43:92:99:1129,0,1240 10 121586827 rs56055506 A G 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.113;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.02;ReadPosRankSum=-1.354;SOR=0.759 GT:AD:DP:GQ:PL 0/1:54,72:126:99:1921,0,1318 10 121591511 rs2273747 G A 1158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.583;SOR=0.65 GT:AD:DP:GQ:PL 0/1:51,52:103:99:1187,0,1107 10 121602949 rs3740565 G A 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.276;SOR=0.479 GT:AD:DP:GQ:PL 0/1:61,62:123:99:1521,0,1573 10 121618382 rs34469768 T A 700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.031;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.754;SOR=1.101 GT:AD:DP:GQ:PL 0/1:39,28:67:99:729,0,961 10 121668656 rs3740570 T G 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.711;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.682;SOR=0.7 GT:AD:DP:GQ:PL 0/1:36,29:65:99:780,0,809 10 121671651 rs17099368 T C 1804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.411;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=1.529;SOR=0.969 GT:AD:DP:GQ:PL 0/1:71,79:150:99:1833,0,1576 10 121679013 rs2475298 A G 3085.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3114,328,0 10 121685559 rs12771873 G A 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.302;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=-0.171;SOR=0.939 GT:AD:DP:GQ:PL 0/1:81,55:136:99:1219,0,1869 10 121693246 rs34826964 A G 739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.007;SOR=0.412 GT:AD:DP:GQ:PL 0/1:26,30:56:99:768,0,664 10 122630877 rs111818084 CT C 39.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.782;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.43;ReadPosRankSum=1.819;SOR=0.484 GT:AD:DP:GQ:PL 0/1:79,14:100:68:68,0,1928 10 123239112 rs1047057 G A 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.576;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=0.143;SOR=0.57 GT:AD:DP:GQ:PL 0/1:90,75:165:99:1539,0,2251 10 123243197 rs2278202 G A 628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=3.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=0.231;SOR=0.621 GT:AD:DP:GQ:PL 0/1:49,30:79:99:657,0,1240 10 123298158 rs1047100 T C 4528.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4557,446,0 10 123549691 rs35350755 T G 2426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=-0.369;QD=14.53;ReadPosRankSum=-0.62;SOR=0.591 GT:AD:DP:GQ:PL 0/1:62,105:167:99:2455,0,1437 10 123596254 rs4237536 T C 1367.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1396,141,0 10 123673339 rs10749435 T C 3368.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.61;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3397,364,0 10 123845322 rs7073433 T C 7708.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7737,733,0 10 123996976 rs2295879 G A 2307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.93;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.376;SOR=0.756 GT:AD:DP:GQ:PL 0/1:120,109:229:99:2336,0,2789 10 124050575 rs11592545 G A 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=0.94;SOR=0.532 GT:AD:DP:GQ:PL 0/1:107,126:233:99:3075,0,2456 10 124089036 rs2421013 G A 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.072;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=1.527;SOR=1.051 GT:AD:DP:GQ:PL 0/1:55,76:131:99:1777,0,1110 10 124096035 rs3817281 T C 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.73;ReadPosRankSum=0.961;SOR=0.582 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,53:110:99:0|1:124096035_T_C:2088,0,2488 10 124096041 rs1129973 T C 2120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.6;ReadPosRankSum=-0.268;SOR=0.574 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,56:114:99:0|1:124096035_T_C:2149,0,2525 10 124096061 rs1048347 A C 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.342;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=3.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-1.56;SOR=0.446 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1487,0,1505 10 124096209 rs3817284 C T 1531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=8.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=-0.3;SOR=0.253 GT:AD:DP:GQ:PL 0/1:43,63:106:99:1560,0,1046 10 124183732 rs4405249 T C 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.591;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=1.081;SOR=0.974 GT:AD:DP:GQ:PL 0/1:49,64:113:99:1486,0,994 10 124189197 rs1045216 A G 3296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.478;SOR=0.68 GT:AD:DP:GQ:PL 0/1:120,147:267:99:3325,0,2623 10 124214355 rs2736911 C T 2920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.566;SOR=0.756 GT:AD:DP:GQ:PL 0/1:99,127:226:99:2949,0,2453 10 124221276 rs2293870 G C 1229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=8.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-0.048;SOR=0.549 GT:AD:DP:GQ:PL 0/1:45,52:97:99:1258,0,1091 10 124271589 rs2672586 G A 3379.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.33;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,78:78:99:1|1:124271589_G_A:3408,235,0 10 124271595 rs2272599 G A 3305.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.67;SOR=1.288 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,74:74:99:1|1:124271589_G_A:3334,226,0 10 124331867 rs7084792 C T 6523.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6552,691,0 10 124339332 rs3013245 T C 21737.8 PASS AC=2;AF=1;AN=2;DB;DP=732;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.29;QD=29.78;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,730:730:99:21766,2189,0 10 124399985 rs2261660 G T 1591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-1.414;SOR=0.674 GT:AD:DP:GQ:PL 0/1:72,69:141:99:1620,0,1806 10 124402677 rs1052715 A G 3130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.037;SOR=0.617 GT:AD:DP:GQ:PL 0/1:133,134:267:99:3159,0,3193 10 124457452 rs2947594 C T 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.106;SOR=0.668 GT:AD:DP:GQ:PL 0/1:88,72:160:99:1595,0,2108 10 124595874 rs68035857 GA G 459.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.127;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=1.269;SOR=0.732 GT:AD:DP:GQ:PL 0/1:7,24:45:97:497,0,97 10 124610027 rs1891110 G A 695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.233;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8;ReadPosRankSum=0.17;SOR=0.651 GT:AD:DP:GQ:PL 0/1:54,33:87:99:724,0,1243 10 124742792 rs3736583 G A 1072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.075;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.228;SOR=0.432 GT:AD:DP:GQ:PL 0/1:42,44:86:99:1101,0,983 10 124742895 rs3736582 G C 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.441;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.254;SOR=0.824 GT:AD:DP:GQ:PL 0/1:90,70:160:99:1623,0,2061 10 124800853 rs1140591 C T 1337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.414;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=0.584;SOR=0.878 GT:AD:DP:GQ:PL 0/1:86,61:147:99:1366,0,2056 10 124812685 rs11307362 AT A 1481.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.29;ReadPosRankSum=0.124;SOR=0.463 GT:AD:DP:GQ:PL 1/1:1,60:70:99:1519,180,0 10 124895633 rs201289648 C G 35.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=8.94;ReadPosRankSum=1.383;SOR=0.693 GT:AD:DP:GQ:PL 0/1:2,2:4:56:64,0,56 10 124909654 rs113030328 C T 2114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.921;SOR=0.532 GT:AD:DP:GQ:PL 0/1:85,91:176:99:2143,0,2094 10 125426412 rs12263344 A G 2597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.586;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-0.921;SOR=0.788 GT:AD:DP:GQ:PL 0/1:107,108:215:99:2626,0,2870 10 125426565 rs4980313 G C 4995.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=1.193 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5024,477,0 10 125506302 rs7088479 T C 5270.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.011;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.96;ReadPosRankSum=-0.983;SOR=0.834 GT:AD:DP:GQ:PL 1/1:2,180:182:99:5299,497,0 10 125521533 rs10794566 G A 8864.77 PASS AC=2;AF=1;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,304:304:99:8893,907,0 10 125521590 rs10794567 G A 7761.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,271:271:99:7790,812,0 10 125528048 rs1219725 G A 3086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.96;ReadPosRankSum=-0.814;SOR=0.752 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,90:182:99:0|1:125527964_G_A:3115,0,3149 10 125602021 rs10794571 C T 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.433;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-1.325;SOR=0.32 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1333,0,1299 10 125622250 rs11299200 CA C 3246.73 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.29;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3284,277,0 10 125780752 rs5788645 CG C 3551.73 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.79;SOR=4.099 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,85:85:99:1|1:125780752_CG_C:3589,259,0 10 125780759 rs4072194 G C 3577.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=23.65;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=38.47;ReadPosRankSum=2.677;SOR=3.437 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,90:93:99:1|1:125780752_CG_C:3606,248,0 10 125801809 rs28716482 C A 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.043;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.546;SOR=0.525 GT:AD:DP:GQ:PL 0/1:68,70:138:99:1693,0,1890 10 126089434 rs11461 G A 608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.996;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=6.417;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.91;ReadPosRankSum=-1.393;SOR=0.825 GT:AD:DP:GQ:PL 0/1:51,26:77:99:637,0,1292 10 126093991 rs9422807 T C 3888.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3917,389,0 10 126100523 rs10794058 G A 766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.069;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-1.848;SOR=0.831 GT:AD:DP:GQ:PL 0/1:48,34:82:99:795,0,1067 10 126172863 rs6597801 A G 5053.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5082,495,0 10 126480381 rs144443222 C T 2998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.925;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-1.052;SOR=0.538 GT:AD:DP:GQ:PL 0/1:161,129:290:99:3027,0,3973 10 126517989 rs2303611 G A 1629.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1658,168,0 10 126670356 rs17152433 G A 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.66;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.41;ReadPosRankSum=-0.299;SOR=0.944 GT:AD:DP:GQ:PL 0/1:77,48:125:99:1079,0,1886 10 126714714 rs2946994 G C 3753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.591;SOR=0.583 GT:AD:DP:GQ:PL 0/1:180,149:329:99:3782,0,4732 10 126714966 rs3012075 A G 4296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.248;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=-0.749;SOR=0.662 GT:AD:DP:GQ:PL 0/1:174,167:341:99:4325,0,4185 10 126715154 rs3781412 A G 3567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=2.582;SOR=0.669 GT:AD:DP:GQ:PL 0/1:162,150:312:99:3596,0,4086 10 126715629 rs3781409 C T 2828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.664;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.922;SOR=0.576 GT:AD:DP:GQ:PL 0/1:143,119:262:99:2857,0,3893 10 126716346 rs2938006 C T 2624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.483;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=3.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.5;ReadPosRankSum=-0.099;SOR=0.809 GT:AD:DP:GQ:PL 0/1:83,98:181:99:2653,0,1992 10 127429604 rs17153494 C T 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.633;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=0.748;SOR=0.883 GT:AD:DP:GQ:PL 0/1:90,65:155:99:1547,0,2118 10 127462525 rs10901425 A G 10064.8 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,335:335:99:10093,1004,0 10 127484653 rs2281954 G A 890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-0.127;SOR=0.667 GT:AD:DP:GQ:PL 0/1:58,44:102:99:919,0,1308 10 127511756 rs4256900 C T 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.482;SOR=0.655 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1403,0,1529 10 127511790 rs4385801 G T 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.436;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.295;SOR=0.708 GT:AD:DP:GQ:PL 0/1:72,62:134:99:1490,0,1750 10 127530325 rs3208565 T C 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.285;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=6.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-1.348;SOR=0.397 GT:AD:DP:GQ:PL 0/1:105,108:213:99:2552,0,2655 10 127724778 rs1044122 A G 2555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.339;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-1.391;SOR=0.598 GT:AD:DP:GQ:PL 0/1:145,111:256:99:2584,0,3462 10 127786969 rs2290842 A G 3146.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3175,327,0 10 127967533 rs117627830 G T 824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=0.122;SOR=0.984 GT:AD:DP:GQ:PL 0/1:46,37:83:99:853,0,1108 10 128019025 rs3740199 C G 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.25;SOR=0.585 GT:AD:DP:GQ:PL 0/1:66,62:128:99:1411,0,1561 10 128192985 rs11245007 C T 3067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.653;SOR=0.762 GT:AD:DP:GQ:PL 0/1:125,132:257:99:3096,0,3194 10 128193368 rs11245008 C T 3079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=1.644;SOR=0.707 GT:AD:DP:GQ:PL 0/1:215,144:359:99:3108,0,5616 10 128926013 rs1060561 A G 3811.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.84;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3840,426,0 10 128974621 rs2489386 C T 5085.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5114,540,0 10 129207564 rs12774391 C T 1619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-1.106;SOR=0.703 GT:AD:DP:GQ:PL 0/1:74,62:136:99:1648,0,2054 10 129242515 rs11371 G A 2936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.312;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.624;SOR=0.693 GT:AD:DP:GQ:PL 0/1:129,122:251:99:2965,0,3105 10 129242555 rs2275053 G A 2361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-1.014;SOR=0.662 GT:AD:DP:GQ:PL 0/1:100,103:203:99:2390,0,2557 10 129249662 rs2229603 G A 11291.8 PASS AC=2;AF=1;AN=2;DB;DP=405;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,403:403:99:11320,1208,0 10 129249676 rs2229604 C T 4104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.165;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.023;SOR=0.723 GT:AD:DP:GQ:PL 0/1:218,195:413:99:4133,0,4808 10 129249693 rs2229605 G A 4169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.88;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.799;SOR=0.772 GT:AD:DP:GQ:PL 0/1:235,202:437:99:4198,0,5198 10 129249701 rs2229606 C G 15594.8 PASS AC=2;AF=1;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.69;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,437:439:99:15623,1317,0 10 129845903 rs7912703 C T 3094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.248;SOR=0.718 GT:AD:DP:GQ:PL 0/1:145,128:273:99:3123,0,3762 10 129846010 rs7911904 G A 6822.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6851,668,0 10 129854369 rs4424589 T C 2019.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.29;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2048,221,0 10 129859992 rs4462251 T C 698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.315;SOR=0.643 GT:AD:DP:GQ:PL 0/1:37,34:71:99:727,0,861 10 129866449 rs7100666 C G 2496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.313;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.898;SOR=0.727 GT:AD:DP:GQ:PL 0/1:133,105:238:99:2525,0,3182 10 129871690 rs2275803 A G 6665.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=29.63;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6694,674,0 10 129871747 rs2275802 C T 3249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=0.598;QD=15.78;ReadPosRankSum=-1.975;SOR=0.655 GT:AD:DP:GQ:PL 0/1:111,95:206:99:3278,0,4335 10 129871748 rs78196136 G A 3904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=-0.564;QD=18.96;ReadPosRankSum=2.204;SOR=0.693 GT:AD:DP:GQ:PL 0/1:96,110:206:99:3933,0,3685 10 129899543 rs10082504 C T 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.498;SOR=0.785 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1525,0,2054 10 129899578 rs8473 T C 5082.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5111,509,0 10 129899629 rs16912247 G A 1928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.208;SOR=0.654 GT:AD:DP:GQ:PL 0/1:76,81:157:99:1957,0,2017 10 129899778 rs11106 G C 2863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.967;SOR=0.705 GT:AD:DP:GQ:PL 0/1:105,116:221:99:2892,0,2607 10 129901393 rs11016071 T C 3062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.107;SOR=0.858 GT:AD:DP:GQ:PL 0/1:139,133:272:99:3091,0,3374 10 129901722 rs10082432 G A 3897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.765;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.78;ReadPosRankSum=-0.248;SOR=0.64 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,105:247:99:0|1:129901722_G_A:3926,0,7158 10 129901726 rs10082533 C T 3896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=-0.118;SOR=0.726 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,102:244:99:0|1:129901722_G_A:3925,0,7121 10 129901825 rs10082391 T C 2547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-1.746;SOR=0.63 GT:AD:DP:GQ:PL 0/1:138,113:251:99:2576,0,3483 10 129901946 rs1050767 T G 2988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.874;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=-1.423;SOR=0.614 GT:AD:DP:GQ:PL 0/1:99,119:218:99:3017,0,2375 10 129902158 rs12777740 C T 3278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.017;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=1.025;SOR=0.765 GT:AD:DP:GQ:PL 0/1:120,127:247:99:3307,0,2926 10 129902281 rs1063535 G A 8012.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.57;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,246:246:99:8041,739,0 10 129903016 rs7071768 T C 8991.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.983;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;MQRankSum=-0.042;QD=30.9;ReadPosRankSum=-0.789;SOR=0.728 GT:AD:DP:GQ:PL 1/1:2,289:291:99:9020,820,0 10 129904474 rs61738284 G A 4620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.022;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.86;ReadPosRankSum=1.918;SOR=0.857 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,121:274:99:0|1:129904474_G_A:4649,0,7286 10 129904477 rs11591817 C T 4620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.001;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.74;ReadPosRankSum=2.286;SOR=0.847 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,122:276:99:0|1:129904474_G_A:4649,0,7286 10 129905429 rs7918199 C T 3337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-0.979;QD=11.59;ReadPosRankSum=0.443;SOR=0.72 GT:AD:DP:GQ:PL 0/1:142,146:288:99:3366,0,3524 10 129906364 rs4750685 G A 2158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=7.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-0.74;SOR=0.862 GT:AD:DP:GQ:PL 0/1:119,89:208:99:2187,0,3067 10 129906427 rs41306015 C A 2557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.968;QD=11.9;ReadPosRankSum=-1.007;SOR=0.695 GT:AD:DP:GQ:PL 0/1:112,103:215:99:2586,0,2914 10 129906468 rs4750936 C T 3377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.835;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-1.346;SOR=0.619 GT:AD:DP:GQ:PL 0/1:122,141:263:99:3406,0,3295 10 129906674 rs41300566 T C 2353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.522;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.976;SOR=0.68 GT:AD:DP:GQ:PL 0/1:105,87:192:99:2382,0,2617 10 129907489 rs2853344 G A 2183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.08;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=0.349;SOR=0.597 GT:AD:DP:GQ:PL 0/1:82,94:176:99:2212,0,2194 10 129907544 rs2240 G C 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.737;SOR=0.632 GT:AD:DP:GQ:PL 0/1:92,87:179:99:2303,0,2533 10 129910475 rs997983 T G 1635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.513;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=1.575;SOR=0.887 GT:AD:DP:GQ:PL 0/1:53,61:114:99:1664,0,1406 10 129911856 rs11016076 C G 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.717;SOR=1.016 GT:AD:DP:GQ:PL 0/1:55,54:109:99:1417,0,1525 10 129913960 rs7095325 A T 1659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=1.037;SOR=0.683 GT:AD:DP:GQ:PL 0/1:77,68:145:99:1688,0,1981 10 131565064 rs2308321 A G 1493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.927;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-1.961;SOR=0.652 GT:AD:DP:GQ:PL 0/1:82,64:146:99:1522,0,1926 10 131565170 rs2308327 A G 2047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.095;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.111;SOR=0.826 GT:AD:DP:GQ:PL 0/1:122,87:209:99:2076,0,2855 10 131639306 rs10674137 T TCCC,TCCCC 3852.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=43.29;SOR=1.127 GT:AD:DP:GQ:PL 1/2:0,38,51:108:99:3890,1375,1080,1080,0,825 10 131934747 rs13991 G C 410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=6.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.21;ReadPosRankSum=0.111;SOR=0.111 GT:AD:DP:GQ:PL 0/1:10,17:27:99:439,0,308 10 131959150 rs2274217 C T 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.197;SOR=0.868 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1018,0,983 10 131967693 rs17297984 T A 353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=0.571;SOR=0.223 GT:AD:DP:GQ:PL 0/1:11,15:26:99:382,0,280 10 132961454 rs118074196 C T 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.244;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.051;SOR=0.478 GT:AD:DP:GQ:PL 0/1:72,78:150:99:1652,0,1664 10 133761285 rs34473884 G A 2642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-1.153;SOR=0.634 GT:AD:DP:GQ:PL 0/1:98,111:209:99:2671,0,2441 10 133918372 rs10870252 G A 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.934;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.888;SOR=0.686 GT:AD:DP:GQ:PL 0/1:107,113:220:99:2680,0,2326 10 133918466 rs10870253 T C 1791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.74;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.286;SOR=0.58 GT:AD:DP:GQ:PL 0/1:75,72:147:99:1820,0,1913 10 133948634 rs2814182 T C 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.086;SOR=0.751 GT:AD:DP:GQ:PL 0/1:104,85:189:99:1901,0,2348 10 133954011 rs2818387 C T 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.739;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-1.667;SOR=1.111 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1493,0,2177 10 133955427 rs11592585 A G 3033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.405;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-0.992;QD=11.85;ReadPosRankSum=-0.467;SOR=0.759 GT:AD:DP:GQ:PL 0/1:128,128:256:99:3062,0,2730 10 133955569 rs5789117 C CCG 6212.73 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=41.42;SOR=1.171 GT:AD:DP:GQ:PL 1/1:0,150:150:99:6250,454,0 10 133961494 rs2818384 C T 3180.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3209,329,0 10 133961564 rs2818383 T C 2238.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2267,237,0 10 133963466 rs9419380 A G 758.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,26:26:78:787,78,0 10 133976706 rs12776458 G T 2959.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.26;SOR=2.174 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2988,267,0 10 134010435 rs78726081 AG A 2798.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.194;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.032;QD=15.05;ReadPosRankSum=-2.029;SOR=0.657 GT:AD:DP:GQ:PL 0/1:95,91:186:99:2836,0,2978 10 134013856 rs871883 G T 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=1.699;SOR=0.587 GT:AD:DP:GQ:PL 0/1:107,100:207:99:2373,0,2871 10 134013906 rs56326856 C T 3130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.747;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=5.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=1.633;SOR=0.988 GT:AD:DP:GQ:PL 0/1:143,125:268:99:3159,0,3513 10 134013990 rs2247705 G A 9135.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9164,920,0 10 134017295 rs12313 A G 7101.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7130,698,0 10 134018447 rs146929318 G GGCC 3074.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.574;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15;ReadPosRankSum=-1.531;SOR=0.928 GT:AD:DP:GQ:PL 0/1:122,83:205:99:3112,0,5244 10 134021506 rs79220014 G A 3725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.75;SOR=0.675 GT:AD:DP:GQ:PL 0/1:161,157:318:99:3754,0,3870 10 134036193 rs2818401 A G 8423.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.15;ReadPosRankSum=-0.575;SOR=0.405 GT:AD:DP:GQ:PL 1/1:1,261:262:99:8452,746,0 10 134040290 rs2306982 C A 1723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.834;SOR=0.528 GT:AD:DP:GQ:PL 0/1:73,70:143:99:1752,0,1948 10 134145136 rs7086691 A G 3776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.902;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.21;ReadPosRankSum=0.773;SOR=0.874 GT:AD:DP:GQ:PGT:PID:PL 0/1:133,100:233:99:0|1:134145136_A_G:3805,0,6601 10 134145138 rs7080014 C G 3776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.42;ReadPosRankSum=0.127;SOR=0.838 GT:AD:DP:GQ:PGT:PID:PL 0/1:130,100:230:99:0|1:134145136_A_G:3805,0,6601 10 134145153 rs7100410 G A 2319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-1.236;SOR=0.649 GT:AD:DP:GQ:PL 0/1:122,101:223:99:2348,0,3287 10 134145166 rs13882 T C 2677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.211;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-1.086;SOR=0.721 GT:AD:DP:GQ:PL 0/1:127,106:233:99:2706,0,3193 10 134161517 rs2474329 C T 2747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.114;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=7.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=1.365;SOR=1.117 GT:AD:DP:GQ:PL 0/1:128,112:240:99:2776,0,3135 10 134161633 rs2474328 A G 2963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=-0.446;SOR=0.624 GT:AD:DP:GQ:PL 0/1:96,118:214:99:2992,0,2320 10 134161781 . T C 2275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DP=235;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-0.733;SOR=1.016 GT:AD:DP:GQ:PL 0/1:134,99:233:99:2304,0,3178 10 134218269 rs11146363 C T 3470.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3499,350,0 10 134218296 rs10747057 C G 3139.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.083;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=6.631;MLEAC=2;MLEAF=1;MQ=59.7;MQRankSum=-0.197;QD=28.29;ReadPosRankSum=0.865;SOR=0.402 GT:AD:DP:GQ:PL 1/1:2,109:111:99:3168,306,0 10 134563122 rs3829130 C T 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-1.065;SOR=0.902 GT:AD:DP:GQ:PL 0/1:46,42:88:99:969,0,1232 10 134563366 rs3750578 A G 1356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=0.909;SOR=0.54 GT:AD:DP:GQ:PL 0/1:41,58:99:99:1385,0,888 10 134598628 rs2804003 A G 4448.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4477,420,0 10 134646988 rs4880433 C T 1317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=1.817;SOR=0.671 GT:AD:DP:GQ:PL 0/1:84,66:150:99:1346,0,2002 10 134659626 rs10870341 A G 2485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.517;SOR=0.745 GT:AD:DP:GQ:PL 0/1:97,104:201:99:2514,0,2190 10 134682855 rs7908950 C T 1501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=0.179;SOR=0.492 GT:AD:DP:GQ:PL 0/1:102,72:174:99:1530,0,2585 10 134722022 rs7075277 A G 3103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.456;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-1.482;SOR=0.82 GT:AD:DP:GQ:PL 0/1:137,130:267:99:3132,0,3276 10 134726335 rs12254100 T C 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.599;SOR=0.561 GT:AD:DP:GQ:PL 0/1:95,90:185:99:2107,0,2360 10 134726621 rs4880467 G C 2443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.68;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=4.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.325;SOR=0.945 GT:AD:DP:GQ:PL 0/1:147,111:258:99:2472,0,3579 10 134735672 rs7915371 A G 2602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.106;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=1.368;SOR=0.876 GT:AD:DP:GQ:PL 0/1:114,113:227:99:2631,0,2552 10 134736026 rs4880286 G A 2324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.616;SOR=0.706 GT:AD:DP:GQ:PL 0/1:136,107:243:99:2353,0,3292 10 134736052 rs4880287 G T 2327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=1.237;SOR=0.745 GT:AD:DP:GQ:PL 0/1:149,109:258:99:2356,0,3708 10 134736076 rs4880288 T G 2269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=0.106;SOR=0.801 GT:AD:DP:GQ:PL 0/1:140,105:245:99:2298,0,3377 10 134738232 rs4075501 A G 3707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.583;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.042;SOR=0.518 GT:AD:DP:GQ:PL 0/1:153,159:312:99:3736,0,3856 10 134748331 rs12781609 C T 674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=-0.47;SOR=0.436 GT:AD:DP:GQ:PL 0/1:38,34:72:99:703,0,948 10 134884516 rs4271312 G A 3219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=0.554;SOR=0.721 GT:AD:DP:GQ:PL 0/1:114,132:246:99:3248,0,2724 10 134884546 rs4576736 A G 3494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-1.636;SOR=0.666 GT:AD:DP:GQ:PL 0/1:121,146:267:99:3523,0,2776 10 134884595 rs4271313 G A 3002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.77;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=8.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.524;SOR=1.166 GT:AD:DP:GQ:PL 0/1:139,120:259:99:3031,0,3455 10 134884610 rs4486541 C G 2806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.143;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=8.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=0.325;SOR=1.152 GT:AD:DP:GQ:PL 0/1:133,116:249:99:2835,0,3251 10 134902398 rs10776693 C T 3466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=1.414;SOR=0.811 GT:AD:DP:GQ:PL 0/1:139,145:284:99:3495,0,3297 10 134996869 rs11101618 G T 2717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.863;SOR=0.653 GT:AD:DP:GQ:PL 0/1:106,119:225:99:2746,0,2471 10 134996950 rs11101619 A G 4931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.065;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.72;ReadPosRankSum=1.576;SOR=0.657 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,130:238:99:0|1:134996950_A_G:4960,0,4674 10 134996954 rs11101620 G A 4885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.711;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.15;ReadPosRankSum=3.395;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:109,122:231:99:0|1:134996950_A_G:4914,0,4701 10 134997480 rs57510763 C T 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60.59;MQRankSum=2.892;QD=10.56;ReadPosRankSum=-1.02;SOR=0.794 GT:AD:DP:GQ:PL 0/1:68,60:128:99:1380,0,1578 10 134999602 rs3008393 G C 6106.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=1.133 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6135,597,0 10 135000148 rs3810965 T C 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.689;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.277;SOR=0.834 GT:AD:DP:GQ:PL 0/1:99,79:178:99:2275,0,2484 10 135000159 rs3810964 A G 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.348;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=-2.256;SOR=0.846 GT:AD:DP:GQ:PL 0/1:86,74:160:99:2135,0,2175 10 135010635 rs41317288 G A 1399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.83;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-1.259;SOR=0.892 GT:AD:DP:GQ:PL 0/1:50,64:114:99:1428,0,1211 10 135012162 rs2998139 T C 9016.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,288:288:99:9045,863,0 10 135012429 rs3008390 T A 2889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.824;SOR=0.799 GT:AD:DP:GQ:PL 0/1:125,121:246:99:2918,0,3063 10 135012430 rs3008389 T C 9377.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.12;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,246:246:99:9406,739,0 10 135012652 rs3008388 T C 2569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.078;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.277;SOR=0.679 GT:AD:DP:GQ:PL 0/1:135,98:233:99:2598,0,3374 10 135020835 rs12028 C G 2188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=6.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=-0.153;SOR=0.364 GT:AD:DP:GQ:PL 0/1:63,82:145:99:2217,0,1681 10 135033618 . TGAGGAGGGGCTCAGGCGGCCGCGCGCCCAGGA T 2366.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0;DP=175;ExcessHet=3.0103;FS=0.65;MLEAC=1;MLEAF=0.5;MQ=63.63;MQRankSum=8.995;QD=18.49;ReadPosRankSum=-0.021;SOR=0.624 GT:AD:DP:GQ:PL 0/1:54,74:132:99:2404,0,2506 10 135043802 rs7092433 C A 3035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.631;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=1.772;SOR=0.527 GT:AD:DP:GQ:PL 0/1:133,124:257:99:3064,0,3329 10 135044009 rs11599284 G A 4763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.037;SOR=0.637 GT:AD:DP:GQ:PL 0/1:213,202:415:99:4792,0,5282 10 135044357 rs150663748 G A 2643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.626;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-1.325;SOR=0.617 GT:AD:DP:GQ:PL 0/1:119,108:227:99:2672,0,3403 10 135044625 . G A 2982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.114;ClippingRankSum=0;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-1.014;SOR=0.702 GT:AD:DP:GQ:PL 0/1:144,122:266:99:3011,0,4033 10 135051562 rs2998143 A G 12521.8 PASS AC=2;AF=1;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,424:424:99:12550,1271,0 10 135082346 rs2275720 A G 11233.8 PASS AC=2;AF=1;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,377:377:99:11262,1129,0 10 135084232 rs5789159 C CAGA 6566.73 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.6;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,144:144:99:6604,442,0 10 135084322 rs3008321 A G 6846.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=31.55;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6875,650,0 10 135085321 rs1131720 C T 5466.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.137;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.77;ReadPosRankSum=-0.805;SOR=1.006 GT:AD:DP:GQ:PL 1/1:2,188:190:99:5495,542,0 10 135085426 rs1131719 A G 7830.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7859,765,0 10 135085754 rs1131718 G A 4030.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=1.845 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4059,381,0 10 135086380 rs3008324 C T 5156.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=28.81;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5185,535,0 10 135087521 rs3008326 G A 3820.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.38;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3849,353,0 10 135089035 rs2275725 A G 5947.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5976,621,0 10 135089077 rs41283317 G A 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.045;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-1.015;SOR=0.718 GT:AD:DP:GQ:PL 0/1:97,65:162:99:1551,0,2446 10 135094925 rs11101677 C T 2198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.525;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=1.066;SOR=0.713 GT:AD:DP:GQ:PL 0/1:107,96:203:99:2227,0,2521 10 135097434 rs2995326 A G 5286.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5315,510,0 10 135098672 rs3008334 G A 7980.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8009,809,0 10 135103311 rs141370078 C CGCCCGCTGCGCCGCGGACGCCAAGTCCCT 9492.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.759;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.399;MLEAC=2;MLEAF=1;MQ=62.96;MQRankSum=0.68;QD=54.87;ReadPosRankSum=0.842;SOR=0.525 GT:AD:DP:GQ:PL 1/1:1,172:175:99:9530,660,0 10 135165790 rs4369319 A G 5713.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.129;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.23;ReadPosRankSum=2.885;SOR=0.941 GT:AD:DP:GQ:PL 1/1:2,187:189:99:5742,517,0 10 135180430 rs2230261 A G 4964.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4993,510,0 10 135184126 rs1049951 G A 8138.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8167,857,0 10 135186806 rs10466126 A G 6060.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6089,614,0 10 135204799 rs6537600 C T 3227.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=2.063 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3256,309,0 10 135204950 rs1046175 C G 9191.77 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,322:322:99:9220,965,0 10 135205009 rs1046178 C G 5359.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.5;SOR=1.654 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5388,481,0 10 135233541 rs2255246 A G 6249.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=29.62;SOR=1.004 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6278,633,0 10 135237060 rs2480253 A G 6819.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,241:241:99:6848,722,0 10 135237166 rs2492666 G A 6387.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6416,679,0 10 135237196 rs4838682 C T 4662.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=29.51;SOR=1.409 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4691,471,0 10 135345675 rs6413419 G A 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.918;SOR=0.659 GT:AD:DP:GQ:PL 0/1:78,72:150:99:1672,0,1846 10 135347397 rs915909 T C 4942.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4971,504,0 10 135351362 rs2515641 T C 1456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.453;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.371;SOR=0.749 GT:AD:DP:GQ:PL 0/1:66,57:123:99:1485,0,1496 10 135439803 rs202189720 C T 60.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.268;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25;MQRankSum=-0;QD=6.08;ReadPosRankSum=1.383;SOR=0.412 GT:AD:DP:GQ:PL 0/1:6,4:10:89:89,0,147 11 193096 rs2280539 T C 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.776;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.437;SOR=0.915 GT:AD:DP:GQ:PL 0/1:74,55:129:99:1605,0,2044 11 193863 rs2294081 T C 8616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.045;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.23;ReadPosRankSum=-0.087;SOR=0.785 GT:AD:DP:GQ:PL 0/1:57,228:285:99:8645,0,829 11 193865 rs2686894 T G 4325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.271;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.07;ReadPosRankSum=0.009;SOR=0.783 GT:AD:DP:GQ:PL 0/1:127,160:287:99:4354,0,4654 11 197557 rs7103852 A G 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.032;SOR=0.664 GT:AD:DP:GQ:PL 0/1:96,73:169:99:1786,0,2390 11 199492 rs72878024 G A 3160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=11.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=0.422;SOR=1.082 GT:AD:DP:GQ:PL 0/1:116,126:242:99:3189,0,2903 11 212408 rs72878032 C T 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.86;ReadPosRankSum=-0.599;SOR=0.422 GT:AD:DP:GQ:PL 0/1:36,72:108:99:1849,0,832 11 236343 rs7118852 A G 3369.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.03;SOR=3.492 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3398,274,0 11 237087 rs1045288 A G 5634.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=1.489 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5663,516,0 11 244106 rs10902112 A G 5408.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.45;SOR=1.059 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,119:119:99:1|1:244106_A_G:5437,370,0 11 244108 rs7107362 A G 5408.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.45;SOR=0.973 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,119:119:99:1|1:244106_A_G:5437,370,0 11 244115 rs7128044 G A 5085.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.61;SOR=0.802 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,114:114:99:1|1:244106_A_G:5114,346,0 11 244129 rs7116130 C T 3534.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3563,369,0 11 244141 rs7128029 G A 3712.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.13;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3741,396,0 11 244167 rs1128320 C T 5577.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.27;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,126:126:99:1|1:244167_C_T:5606,382,0 11 244171 rs1128321 T C 5566.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.53;SOR=0.709 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,125:125:99:1|1:244167_C_T:5595,382,0 11 244197 rs1128322 T C 3426.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,119:121:99:3455,356,0 11 244414 rs2272565 C T 1931.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1960,195,0 11 280221 rs6421985 A C 7072.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.21;SOR=1.05 GT:AD:DP:GQ:PL 1/1:0,213:213:99:7101,639,0 11 280464 rs77447196 C G 3374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.072;SOR=0.734 GT:AD:DP:GQ:PL 0/1:139,127:268:99:3403,0,3852 11 280673 rs12807092 C T 7062.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.986;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.48;ReadPosRankSum=-0.149;SOR=0.831 GT:AD:DP:GQ:PL 1/1:2,246:248:99:7091,667,0 11 280816 rs7482965 A T 6855.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,154:154:99:1|1:280816_A_T:6884,464,0 11 280817 rs7482279 T C 6855.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.4;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,151:151:99:1|1:280816_A_T:6884,464,0 11 284257 rs11246050 G A 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.254;SOR=0.638 GT:AD:DP:GQ:PL 0/1:75,60:135:99:1515,0,1917 11 284538 rs6598047 T C 6129.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6158,602,0 11 290816 rs10902120 A G 9807.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9836,956,0 11 293001 rs35259273 A AG 5148.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.621;QD=16.19;ReadPosRankSum=-0.13;SOR=0.701 GT:AD:DP:GQ:PL 0/1:145,173:318:99:5186,0,4191 11 293188 rs12801980 T C 4090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.647;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=3.073;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-1.382;SOR=0.792 GT:AD:DP:GQ:PL 0/1:147,158:305:99:4119,0,3300 11 308178 rs1058873 T C 2598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.343;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.92;ReadPosRankSum=1.093;SOR=1.027 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,66:145:99:0|1:308178_T_C:2627,0,4650 11 308180 rs10398 A G 2598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.246;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=5.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.44;ReadPosRankSum=0.105;SOR=1.112 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,70:149:99:0|1:308178_T_C:2627,0,4650 11 308290 rs1058900 T C 10785.8 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.53;QD=36.94;SOR=1.171 GT:AD:DP:GQ:PL 1/1:0,292:292:99:10814,885,0 11 308314 rs14408 T C 3705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.782;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=55.08;MQRankSum=-5.058;QD=12.35;ReadPosRankSum=-0.729;SOR=0.763 GT:AD:DP:GQ:PL 0/1:156,144:300:99:3734,0,4033 11 308363 rs1058935 G C 9517.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.73;QD=30.12;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9546,947,0 11 308426 rs1058964 G C 9127.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.61;QD=33.31;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,274:274:99:9156,823,0 11 309127 rs1059091 A G 3143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.833;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=4.563;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0.891;QD=10.69;ReadPosRankSum=0.142;SOR=0.771 GT:AD:DP:GQ:PL 0/1:165,129:294:99:3172,0,4029 11 314207 rs9667990 C G 5831.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=1.383 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5860,565,0 11 372157 rs34063493 C T 5588.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5617,593,0 11 372700 rs35475866 G C 2986.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=1.968 GT:AD:DP:GQ:PL 1/1:0,91:92:99:3015,273,0 11 379598 rs1134699 A G 9553.77 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,304:304:99:9582,909,0 11 397063 rs113852684 C A 6082.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.565;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.96;ReadPosRankSum=0.845;SOR=0.875 GT:AD:DP:GQ:PL 1/1:2,201:203:99:6111,586,0 11 400109 rs8858 A G 3924.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3953,396,0 11 403939 rs7479832 A G 3632.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3661,341,0 11 406043 rs7947 G A 10381.8 PASS AC=2;AF=1;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,356:356:99:10410,1061,0 11 406473 rs3087588 A C 11349.8 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.82;SOR=0.885 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,259:259:99:1|1:406473_A_C:11378,788,0 11 406483 rs3210908 T C 11119.8 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=0.963 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,248:248:99:1|1:406473_A_C:11148,761,0 11 428385 rs10794323 A G 9747.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.148;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.24;ReadPosRankSum=2.198;SOR=0.83 GT:AD:DP:GQ:PL 1/1:2,310:312:99:9776,887,0 11 428489 rs10794324 T C 10112.8 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,325:325:99:10141,974,0 11 431834 rs55914928 A G 7541.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7570,775,0 11 433387 rs7395065 A G 10708.8 PASS AC=2;AF=1;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,361:361:99:10737,1082,0 11 549959 rs7942030 C T 3308.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3337,326,0 11 551644 rs113026126 C T 3402.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3431,330,0 11 551753 rs4963198 G A 5404.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5433,564,0 11 554018 rs112033363 G A 7147.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7176,749,0 11 554968 rs12280283 A G 2498.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2527,243,0 11 556121 rs936467 G A 8714.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8743,877,0 11 556521 rs28406183 C G 7377.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7406,729,0 11 556599 rs117506874 C T 4397.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.149 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4426,451,0 11 556857 rs7938269 G C 9557.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,304:304:99:9586,912,0 11 557584 rs11822657 G A 9071.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,290:290:99:9100,870,0 11 617967 rs2740379 C G 4887.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.94;SOR=1.195 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4916,432,0 11 637361 . CGCGGGGGCATCT C 4898.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0;DP=201;ExcessHet=3.0103;FS=8.885;MLEAC=2;MLEAF=1;MQ=60.43;MQRankSum=0.45;QD=27.37;ReadPosRankSum=1.147;SOR=0.055 GT:AD:DP:GQ:PL 1/1:4,175:179:99:4936,473,0 11 640119 rs762502 C T 5960.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.06;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=16.857;MLEAC=2;MLEAF=1;MQ=59.84;MQRankSum=1.781;QD=25.36;ReadPosRankSum=6.735;SOR=0.076 GT:AD:DP:GQ:PL 1/1:17,218:235:99:5989,568,0 11 654043 rs10902188 G A 2789.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=1.237 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2818,292,0 11 695842 rs7928305 G A 5116.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.233 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5145,514,0 11 695854 rs7945422 C T 4893.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=1.344 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4922,476,0 11 700247 rs7482162 A C 2461.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2490,245,0 11 709401 rs10902202 A G 1780.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1809,168,0 11 720197 rs3087546 C T 5805.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5834,599,0 11 721570 rs7635 C T 5509.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5538,561,0 11 726178 rs28498399 G C 4127.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.98;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,118:118:99:4156,354,0 11 771034 rs7930569 A G 9356.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,299:303:99:9385,897,0 11 772490 rs12224894 G A 4234.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4263,443,0 11 801631 rs55974235 T TG 3388.73 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=31.67;SOR=1.841 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3426,325,0 11 802379 rs10902221 T C 4838.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.6;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4867,433,0 11 802902 rs28360884 T G 2907.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2936,276,0 11 804212 rs7104785 C A 4741.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4770,474,0 11 822622 rs7942159 A G 3744.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.387 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3773,363,0 11 824789 rs1138693 T C 6292.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6321,612,0 11 828784 rs28507876 A G 8214.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8243,800,0 11 828916 rs7126805 G A 6912.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.15;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6941,645,0 11 829539 rs28558789 A G 6497.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=1.422 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6526,618,0 11 830670 rs4075289 G T 8820.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.16;SOR=1.272 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8849,799,0 11 831682 rs35336339 C T 9715.77 PASS AC=2;AF=1;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,331:331:99:9744,992,0 11 831713 . G T 3757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0;DP=266;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.13;ReadPosRankSum=0.89;SOR=0.645 GT:AD:DP:GQ:PL 0/1:117,149:266:99:3786,0,2835 11 837582 rs1130663 G A 4192.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.47;QD=31.06;SOR=1.049 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4221,405,0 11 840363 rs6591 C T 2552.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.16;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2581,281,0 11 840477 rs4895 A G 1933.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.63;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1962,209,0 11 862652 rs28505621 T C 5586.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5615,573,0 11 865503 rs28581489 G A 2386.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=2.012 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2415,226,0 11 900929 rs10794339 C G 1500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.26;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.041;SOR=0.844 GT:AD:DP:GQ:PL 0/1:62,67:129:99:1529,0,1621 11 903070 rs28380110 G C 4116.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4145,381,0 11 972270 rs7933889 C T 5507.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.678 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5536,530,0 11 985547 rs10794358 C T 7604.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7633,788,0 11 992691 rs10902263 G T 5127.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5156,516,0 11 1009416 rs7126709 C T 958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.379;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=5.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.43;ReadPosRankSum=0.369;SOR=0.754 GT:AD:DP:GQ:PL 0/1:82,47:129:99:987,0,1991 11 1013987 rs10902268 G A 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.493;SOR=0.931 GT:AD:DP:GQ:PL 0/1:97,81:178:99:1805,0,2257 11 1017783 . A C 823.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.682;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.74;MQRankSum=-0.153;QD=7.56;ReadPosRankSum=1.961;SOR=0.165 GT:AD:DP:GQ:PL 0/1:77,32:109:99:852,0,2748 11 1017883 rs79644784 C A 357.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.591;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=89.703;MLEAC=1;MLEAF=0.5;MQ=41.61;MQRankSum=5.202;QD=7.16;ReadPosRankSum=-5.468;SOR=3.41 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,11:50:99:0|1:1017883_C_A:386,0,1663 11 1017892 rs75500881 C G 803.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.742;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=124.819;MLEAC=1;MLEAF=0.5;MQ=44.53;MQRankSum=6.309;QD=14.1;ReadPosRankSum=-5.019;SOR=3.794 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,21:57:99:0|1:1017883_C_A:832,0,1592 11 1017893 rs76078620 A G 806.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.064;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=133.12;MLEAC=1;MLEAF=0.5;MQ=45.09;MQRankSum=6.48;QD=13.67;ReadPosRankSum=-4.854;SOR=3.985 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,23:59:99:0|1:1017883_C_A:835,0,1557 11 1017921 rs112301388 C A 1722.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.381;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=87.956;MLEAC=1;MLEAF=0.5;MQ=53.28;MQRankSum=7.217;QD=21.53;ReadPosRankSum=0.266;SOR=2.155 GT:AD:DP:GQ:PL 0/1:19,61:80:99:1751,0,626 11 1017941 rs61869007 G T 2272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.822;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=46.944;MLEAC=1;MLEAF=0.5;MQ=55.67;MQRankSum=6.861;QD=23.43;ReadPosRankSum=1.466;SOR=1.664 GT:AD:DP:GQ:PL 0/1:10,87:97:73:2301,0,73 11 1017963 rs61869008 G A 5802.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=18.712;MLEAC=2;MLEAF=1;MQ=57.17;MQRankSum=5.903;QD=42.05;ReadPosRankSum=1.577;SOR=1.418 GT:AD:DP:GQ:PGT:PID:PL 1/1:4,134:138:99:1|1:1017963_G_A:5831,177,0 11 1017968 rs61869009 T A 5955.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=18.614;MLEAC=2;MLEAF=1;MQ=57.3;MQRankSum=6.059;QD=40.79;ReadPosRankSum=2.151;SOR=1.396 GT:AD:DP:GQ:PGT:PID:PL 1/1:4,142:146:99:1|1:1017963_G_A:5984,192,0 11 1017981 rs61869010 T A 4899.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=9.342;MLEAC=2;MLEAF=1;MQ=57.9;MQRankSum=4.933;QD=28.49;ReadPosRankSum=1.891;SOR=1.38 GT:AD:DP:GQ:PL 1/1:2,170:172:99:4928,436,0 11 1018374 rs7396383 T A 11108.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.773;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=3.019;MLEAC=2;MLEAF=1;MQ=59.97;MQRankSum=-0.036;QD=29.39;ReadPosRankSum=1.431;SOR=0.114 GT:AD:DP:GQ:PL 1/1:2,376:378:99:11137,1110,0 11 1019375 rs9704308 C T 8394.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8423,885,0 11 1026048 rs55965773 G A 3709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.243;SOR=0.526 GT:AD:DP:GQ:PL 0/1:148,155:303:99:3738,0,3656 11 1027174 rs79139625 G A 3838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.102;SOR=0.677 GT:AD:DP:GQ:PL 0/1:144,170:314:99:3867,0,3532 11 1027811 rs7481521 C T 8794.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,297:297:99:8823,889,0 11 1029320 rs11604757 C T 3920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.378;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=5.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.849;SOR=0.464 GT:AD:DP:GQ:PL 0/1:151,147:298:99:3949,0,3993 11 1075850 rs11825969 G A 3130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.961;SOR=0.888 GT:AD:DP:GQ:PL 0/1:136,134:270:99:3159,0,3329 11 1075920 rs11825977 G A 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.053;SOR=0.48 GT:AD:DP:GQ:PL 0/1:142,96:238:99:2286,0,3609 11 1078393 rs7104590 T C 2580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.198;SOR=0.964 GT:AD:DP:GQ:PL 0/1:108,107:215:99:2609,0,2492 11 1082582 rs7952257 G A 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.949;SOR=0.563 GT:AD:DP:GQ:PL 0/1:121,100:221:99:2296,0,2931 11 1083178 rs375576703 C T 2678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=6.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.23;SOR=0.726 GT:AD:DP:GQ:PL 0/1:121,113:234:99:2707,0,2993 11 1093274 rs11245949 C T 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.943;ClippingRankSum=0;DB;DP=492;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.5;MQ=48.53;MQRankSum=4.627;QD=3.48;ReadPosRankSum=2.058;SOR=0.881 GT:AD:DP:GQ:PL 0/1:351,130:481:99:1700,0,10452 11 1093710 rs7944723 C G 18351.8 PASS AC=2;AF=1;AN=2;DB;DP=621;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,618:618:99:18380,1849,0 11 1093945 rs7934606 T C 2958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=1.373;SOR=0.681 GT:AD:DP:GQ:PL 0/1:123,122:245:99:2987,0,2923 11 1094690 rs10794291 C T 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.11;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.089;SOR=0.613 GT:AD:DP:GQ:PL 0/1:119,105:224:99:2500,0,2930 11 1094753 rs10794292 A C 2767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.034;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=4.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=0.088;SOR=0.704 GT:AD:DP:GQ:PL 0/1:148,121:269:99:2796,0,3276 11 1096494 rs6421972 T C 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.228;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.716;SOR=0.664 GT:AD:DP:GQ:PL 0/1:133,129:262:99:2711,0,3149 11 1098637 rs12418069 A G 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.924;SOR=0.677 GT:AD:DP:GQ:PL 0/1:73,66:139:99:1583,0,1969 11 1101649 rs7480563 T C 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.725;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.305;SOR=0.698 GT:AD:DP:GQ:PL 0/1:73,65:138:99:1576,0,1649 11 1158073 rs28691231 T C 9497.77 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,323:323:99:9526,969,0 11 1161315 rs28403537 T C 5061.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.21;ReadPosRankSum=-0.309;SOR=0.236 GT:AD:DP:GQ:PL 1/1:1,185:186:99:5090,515,0 11 1246941 rs2672785 A G 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.582;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=6.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-1.495;SOR=1.162 GT:AD:DP:GQ:PL 0/1:80,65:145:99:1502,0,1979 11 1247458 rs2075853 C T 2001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=0.95;SOR=0.782 GT:AD:DP:GQ:PL 0/1:106,92:198:99:2030,0,2535 11 1250384 rs2471912 A G 2532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.434;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=5.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=0.755;SOR=0.418 GT:AD:DP:GQ:PL 0/1:89,100:189:99:2561,0,2030 11 1250488 rs2075859 C T 2785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.47;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=3.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.764;SOR=0.817 GT:AD:DP:GQ:PL 0/1:154,126:282:99:2814,0,3873 11 1252708 rs2735709 G C 2200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=0.28;SOR=0.969 GT:AD:DP:GQ:PL 0/1:122,96:218:99:2229,0,3111 11 1253401 rs12421917 C G 2300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.117;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.892;SOR=0.772 GT:AD:DP:GQ:PL 0/1:125,95:220:99:2329,0,3118 11 1253856 rs1318321 T C 4245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.748;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.883;SOR=0.645 GT:AD:DP:GQ:PL 0/1:147,165:312:99:4274,0,3499 11 1253942 rs908229 T C 3961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.429;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.963;QD=12.54;ReadPosRankSum=-1.929;SOR=0.811 GT:AD:DP:GQ:PL 0/1:153,163:316:99:3990,0,3598 11 1255089 rs147340559 CCCCTG C 875.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.873;SOR=0.848 GT:AD:DP:GQ:PL 0/1:33,33:66:99:913,0,1808 11 1255773 rs7116614 C T 2263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-1.494;SOR=0.694 GT:AD:DP:GQ:PL 0/1:101,96:197:99:2292,0,2479 11 1264362 rs11605113 A G 5093.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=470;ExcessHet=3.0103;FS=1.76;MLEAC=1;MLEAF=0.5;MQ=38.41;MQRankSum=0.163;QD=10.88;ReadPosRankSum=-0.46;SOR=0.692 GT:AD:DP:GQ:PL 0/1:269,199:470:99:5122,0,7037 11 1264631 rs56726556 A G 1929.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.496;ClippingRankSum=0;DB;DP=492;ExcessHet=3.0103;FS=18.68;MLEAC=1;MLEAF=0.5;MQ=56.38;MQRankSum=-21.314;QD=3.93;ReadPosRankSum=-0.118;SOR=1.809 GT:AD:DP:GQ:PL 0/1:388,103:491:99:1958,0,10234 11 1264742 rs137973688 G C 990.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.675;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=74.578;MLEAC=1;MLEAF=0.5;MQ=57.47;MQRankSum=-18.438;QD=2.48;ReadPosRankSum=-4.889;SOR=3.215 GT:AD:DP:GQ:PL 0/1:336,63:399:99:1019,0,9841 11 1264823 rs4963031 T C 4914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=549;ExcessHet=3.0103;FS=15.487;MLEAC=1;MLEAF=0.5;MQ=57.75;MQRankSum=-11.489;QD=8.97;ReadPosRankSum=0.133;SOR=1.505 GT:AD:DP:GQ:PL 0/1:333,215:548:99:4943,0,8731 11 1265786 rs200197337 C T 6217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0;DB;DP=598;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=40.77;MQRankSum=-2.612;QD=10.42;ReadPosRankSum=1.241;SOR=0.615 GT:AD:DP:GQ:PL 0/1:317,280:597:99:6246,0,7667 11 1266696 . A C 864.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.94;ClippingRankSum=0;DP=464;ExcessHet=3.0103;FS=17.616;MLEAC=1;MLEAF=0.5;MQ=52.3;MQRankSum=-11.153;QD=1.87;ReadPosRankSum=-5.708;SOR=2.147 GT:AD:DP:GQ:PL 0/1:389,74:463:99:893,0,19047 11 1266716 rs200243273 T C 425.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.243;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=32.275;MLEAC=1;MLEAF=0.5;MQ=50.8;MQRankSum=-8.129;QD=1.15;ReadPosRankSum=-4.236;SOR=3.004 GT:AD:DP:GQ:PL 0/1:337,33:370:99:454,0,17682 11 1267325 rs55813014 T C 5528.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.075;ClippingRankSum=0;DB;DP=466;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.5;MQ=51.9;MQRankSum=-19.45;QD=11.92;ReadPosRankSum=1.022;SOR=0.514 GT:AD:DP:GQ:PL 0/1:245,219:464:99:5557,0,5854 11 1267562 rs60268710 C T 5122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0;DB;DP=482;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.36;MQRankSum=-0.41;QD=10.67;ReadPosRankSum=0.468;SOR=0.68 GT:AD:DP:GQ:PL 0/1:269,211:480:99:5151,0,7062 11 1267917 rs3021163 T C 5362.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.241;ClippingRankSum=0;DB;DP=516;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=54.59;MQRankSum=-18.092;QD=10.43;ReadPosRankSum=-1.652;SOR=0.639 GT:AD:DP:GQ:PL 0/1:295,219:514:99:5391,0,7460 11 1267960 rs2943531 A G 5085.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.893;ClippingRankSum=0;DB;DP=517;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.5;MQ=52.76;MQRankSum=-21.181;QD=9.86;ReadPosRankSum=-1.542;SOR=0.61 GT:AD:DP:GQ:PL 0/1:321,195:516:99:5114,0,8386 11 1268064 rs200948102 C T 5799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.324;ClippingRankSum=0;DB;DP=595;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.86;MQRankSum=-11.858;QD=9.78;ReadPosRankSum=-0.22;SOR=0.644 GT:AD:DP:GQ:PL 0/1:323,270:593:99:5828,0,8373 11 1268340 rs368194612 A T 423.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.114;ClippingRankSum=0;DB;DP=751;ExcessHet=3.0103;FS=23.404;MLEAC=1;MLEAF=0.5;MQ=57.08;MQRankSum=-18.894;QD=0.57;ReadPosRankSum=-2.214;SOR=3.038 GT:AD:DP:GQ:PL 0/1:665,81:748:99:452,0,18650 11 1268513 rs2943529 G C 16401.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0;DB;DP=941;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=55.41;MQRankSum=-12.33;QD=17.5;ReadPosRankSum=1.374;SOR=0.844 GT:AD:DP:GQ:PL 0/1:318,619:937:99:16430,0,7427 11 1268608 rs2943527 A G 10158.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.787;ClippingRankSum=0;DB;DP=661;ExcessHet=3.0103;FS=5.998;MLEAC=1;MLEAF=0.5;MQ=52.75;MQRankSum=-18.501;QD=15.42;ReadPosRankSum=-0.928;SOR=0.901 GT:AD:DP:GQ:PL 0/1:273,386:659:99:10187,0,6325 11 1268931 rs2334757 A C 994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.475;ClippingRankSum=0;DB;DP=431;ExcessHet=3.0103;FS=13.686;MLEAC=1;MLEAF=0.5;MQ=42.83;MQRankSum=-10.793;QD=2.31;ReadPosRankSum=-0.361;SOR=1.802 GT:AD:DP:GQ:PL 0/1:366,65:431:99:1023,0,9281 11 1269398 rs148995598 C T 2325.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.366;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=34.89;MQRankSum=-0.423;QD=14.81;ReadPosRankSum=-0.906;SOR=0.768 GT:AD:DP:GQ:PL 0/1:78,79:157:99:2354,0,2441 11 1269627 rs4963056 C T 9736.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.431;ClippingRankSum=0;DB;DP=631;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.19;MQRankSum=-13.217;QD=15.48;ReadPosRankSum=-1.941;SOR=0.694 GT:AD:DP:GQ:PGT:PID:PL 0/1:345,284:629:99:0|1:1269627_C_T:9765,0,14403 11 1269672 rs4963057 T C 10150.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.857;ClippingRankSum=0;DB;DP=645;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=55.74;MQRankSum=-19.344;QD=15.76;ReadPosRankSum=0.27;SOR=0.721 GT:AD:DP:GQ:PGT:PID:PL 0/1:339,305:644:99:0|1:1269627_C_T:10179,0,14249 11 1269835 rs2943521 G A 6940.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.636;ClippingRankSum=0;DB;DP=695;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.71;MQRankSum=-13.529;QD=10.02;ReadPosRankSum=1.222;SOR=0.664 GT:AD:DP:GQ:PL 0/1:394,299:693:99:6969,0,9971 11 1271321 rs2943517 C G 7343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.605;ClippingRankSum=0;DB;DP=643;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.73;MQRankSum=-0.12;QD=11.49;ReadPosRankSum=-0.542;SOR=0.688 GT:AD:DP:GQ:PL 0/1:332,307:639:99:7372,0,8767 11 1271429 rs2943516 C T 7634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.459;ClippingRankSum=0;DB;DP=601;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.5;MQ=51.87;MQRankSum=2.212;QD=12.77;ReadPosRankSum=2.087;SOR=0.7 GT:AD:DP:GQ:PL 0/1:291,307:598:99:7663,0,7485 11 1271508 rs12418291 G A 8254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.196;ClippingRankSum=0;DB;DP=581;ExcessHet=3.0103;FS=4.948;MLEAC=1;MLEAF=0.5;MQ=45.04;MQRankSum=1.247;QD=14.21;ReadPosRankSum=-2.029;SOR=0.575 GT:AD:DP:GQ:PL 0/1:272,309:581:99:8283,0,7158 11 1272226 rs2943512 A C 6826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.749;ClippingRankSum=0;DB;DP=557;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.58;MQRankSum=-5.082;QD=12.28;ReadPosRankSum=0.132;SOR=0.718 GT:AD:DP:GQ:PL 0/1:275,281:556:99:6855,0,6567 11 1272858 rs4963059 C T 2662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=2.214;SOR=0.751 GT:AD:DP:GQ:PL 0/1:171,126:297:99:2691,0,4296 11 1309956 rs3750920 C T 8069.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8098,794,0 11 1411501 rs112066837 C T 1656.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.781 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1685,167,0 11 1462162 rs61002819 AG A 1755.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.484;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.523;QD=13.72;ReadPosRankSum=1.544;SOR=0.712 GT:AD:DP:GQ:PL 0/1:68,60:128:99:1793,0,2094 11 1475706 rs55744154 A G 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.865;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.57;SOR=0.674 GT:AD:DP:GQ:PL 0/1:63,65:128:99:1638,0,1722 11 1481930 rs4963048 A G 4283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.551;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=11.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=0.144;SOR=0.322 GT:AD:DP:GQ:PL 0/1:118,166:284:99:4312,0,2403 11 1481962 rs34875491 GC G 2270.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.198;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.12;QD=9.34;ReadPosRankSum=2.205;SOR=0.509 GT:AD:DP:GQ:PL 0/1:104,139:272:99:2308,0,1885 11 1501670 rs10742185 G C 1837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.785;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=1.076;SOR=0.528 GT:AD:DP:GQ:PL 0/1:91,78:169:99:1866,0,2172 11 1502097 rs10767696 A G 2441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.013;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=3.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-1.018;SOR=0.912 GT:AD:DP:GQ:PL 0/1:104,97:201:99:2470,0,2729 11 1507731 rs1881503 A G 2072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=-0.079;SOR=0.81 GT:AD:DP:GQ:PL 0/1:63,87:150:99:2101,0,1518 11 1507795 rs1110206 G A 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.83;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.333;SOR=0.779 GT:AD:DP:GQ:PL 0/1:50,65:115:99:1467,0,1181 11 1579018 rs113161544 T C 2597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.448;SOR=0.793 GT:AD:DP:GQ:PL 0/1:112,107:219:99:2626,0,2815 11 1628948 rs117085626 G A 4685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.452;ClippingRankSum=0;DB;DP=393;ExcessHet=3.0103;FS=9.91;MLEAC=1;MLEAF=0.5;MQ=59.63;MQRankSum=-1.332;QD=12.08;ReadPosRankSum=-0.329;SOR=0.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:193,195:388:99:0|1:1628948_G_A:4714,0,7687 11 1628965 rs57186801 G A 7365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.757;ClippingRankSum=0;DB;DP=430;ExcessHet=3.0103;FS=4.082;MLEAC=1;MLEAF=0.5;MQ=59.72;MQRankSum=1.304;QD=17.45;ReadPosRankSum=-0.424;SOR=0.964 GT:AD:DP:GQ:PGT:PID:PL 0/1:215,207:422:99:1|0:1628948_G_A:7394,0,8497 11 1628992 rs60210378 G A 7962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.021;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=0.686;QD=16.09;ReadPosRankSum=0.996;SOR=0.764 GT:AD:DP:GQ:PGT:PID:PL 0/1:261,234:495:99:1|0:1628948_G_A:7991,0,9424 11 1642976 . A ACCCCCACAGGAGCCACAGCCCCCCTTGGAGCCCCCACAGGAGCCACAGCCCCCCTTGGAC 377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.29;MQRankSum=-0.434;QD=17.17;ReadPosRankSum=3.219;SOR=2.303 GT:AD:DP:GQ:PL 0/1:5,17:22:99:406,0,153 11 1643228 rs61867574 G A 5578.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.86;ClippingRankSum=0;DB;DP=494;ExcessHet=3.0103;FS=6.317;MLEAC=2;MLEAF=1;MQ=59.43;MQRankSum=11.255;QD=17.43;ReadPosRankSum=5.401;SOR=0.27 GT:AD:DP:GQ:PL 1/1:19,301:359:67:5607,67,0 11 1651120 rs66665994 G T 7704.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DB;DP=655;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.67;MQRankSum=-0.68;QD=41.65;ReadPosRankSum=-0.534;SOR=0.241 GT:AD:DP:GQ:PL 1/1:1,184:185:99:7733,716,0 11 1651161 rs71454094 T C 10239.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.202;ClippingRankSum=0;DB;DP=743;ExcessHet=3.0103;FS=4.78;MLEAC=2;MLEAF=1;MQ=56.62;MQRankSum=0.638;QD=34.95;ReadPosRankSum=2.571;SOR=0.555 GT:AD:DP:GQ:PL 1/1:4,289:293:99:10268,811,0 11 1651169 rs71454095 T C 23484.8 PASS AC=2;AF=1;AN=2;DB;DP=741;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.61;QD=43.73;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,537:537:99:23513,1774,0 11 1651199 rs71025763 A AGGCTGTGGCTCC,AGGCCGTGGCTCC 8347.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=679;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=56.45;QD=29.09;SOR=0.915 GT:AD:DP:GQ:PL 1/2:0,113,174:287:99:8376,3653,4822,2541,0,6304 11 1651228 rs71454096 C G 6282.77 PASS AC=2;AF=1;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.47;QD=35.5;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,177:177:99:6311,452,0 11 1651540 rs61867581 C G 10040.8 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.79;QD=45.03;SOR=1.881 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,223:223:99:1|1:1651540_C_G:10069,686,0 11 1651550 rs61867582 C T 10645.8 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.12;QD=43.1;SOR=1.822 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,247:247:99:1|1:1651540_C_G:10674,743,0 11 1651613 rs71025765 TTACTGCTGCCAGTCCAGCTGCTGTAAGCCC T 9580.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DB;DP=392;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.78;MQRankSum=0.47;QD=30.91;ReadPosRankSum=-1.183;SOR=0.788 GT:AD:DP:GQ:PL 1/1:2,308:310:99:9618,888,0 11 1857112 rs907606 C A 1155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=-0.135;SOR=1.007 GT:AD:DP:GQ:PL 0/1:32,47:79:99:1184,0,803 11 1857173 rs564271 T C 4101.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4130,393,0 11 1857747 rs3741232 T C 3886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.657;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.78;ReadPosRankSum=1.032;SOR=0.591 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,99:187:99:0|1:1857747_T_C:3915,0,3385 11 1857751 rs3741231 C G 3945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.978;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.88;ReadPosRankSum=0.944;SOR=0.587 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,102:189:99:0|1:1857747_T_C:3974,0,3379 11 1857762 rs3741230 C T 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-1.529;SOR=0.756 GT:AD:DP:GQ:PL 0/1:100,84:184:99:1770,0,2364 11 1858463 rs186919563 G A 3538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=3.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.126;SOR=0.743 GT:AD:DP:GQ:PL 0/1:131,146:277:99:3567,0,3219 11 1858572 rs2292474 C T 7661.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7690,755,0 11 1861760 rs907610 T C 9639.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9668,930,0 11 1887806 rs7938342 T A 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.758;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-1.056;QD=10.45;ReadPosRankSum=-1.804;SOR=0.896 GT:AD:DP:GQ:PL 0/1:108,95:203:99:2150,0,2405 11 1901467 rs2271439 A C 5456.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.87;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5485,498,0 11 1902768 rs621679 G A 3386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.128;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.231;SOR=0.804 GT:AD:DP:GQ:PL 0/1:170,158:328:99:3415,0,4172 11 1951034 rs200739738 G A 2324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.245;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=7.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.079;SOR=0.354 GT:AD:DP:GQ:PL 0/1:74,102:176:99:2353,0,1724 11 1977552 rs12812 G A 4020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=2.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.386;SOR=0.572 GT:AD:DP:GQ:PL 0/1:178,169:347:99:4049,0,4500 11 1993975 rs190063 C A 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.522;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-2.039;SOR=1.035 GT:AD:DP:GQ:PL 0/1:80,70:150:99:1926,0,2125 11 2181073 rs3842752 G A 4109.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4138,397,0 11 2182004 rs5506 A G 9319.77 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9348,942,0 11 2187855 rs12419447 G C 11660.8 PASS AC=2;AF=1;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,365:365:99:11689,1096,0 11 2188238 rs6357 C T 7670.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7699,738,0 11 2188681 . C T 2676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0;DP=219;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=2.615;SOR=0.562 GT:AD:DP:GQ:PL 0/1:96,123:219:99:2705,0,2057 11 2323022 rs12276847 C T 7628.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.1;SOR=0.963 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,173:173:99:1|1:2323022_C_T:7657,536,0 11 2323029 rs756924 T C 7862.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.5;SOR=0.794 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,185:185:99:1|1:2323022_C_T:7891,560,0 11 2329995 rs11554947 C T 2568.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.76;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2597,287,0 11 2424684 rs2234283 A C 8989.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9018,882,0 11 2427291 rs800342 A C 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.216;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.829;SOR=0.623 GT:AD:DP:GQ:PL 0/1:72,67:139:99:1577,0,1568 11 2427364 rs61873460 T C 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-2.382;SOR=0.817 GT:AD:DP:GQ:PL 0/1:42,37:79:99:824,0,989 11 2435931 rs4929980 C T 5302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=4.118;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.966;QD=20.32;ReadPosRankSum=0.23;SOR=0.934 GT:AD:DP:GQ:PGT:PID:PL 0/1:125,136:261:99:0|1:2435910_G_GC:5331,0,5753 11 2435946 rs4929981 A G 5763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.045;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=4.691;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.962;QD=20.66;ReadPosRankSum=1.04;SOR=0.949 GT:AD:DP:GQ:PGT:PID:PL 0/1:133,146:279:99:0|1:2435910_G_GC:5792,0,6300 11 2435956 rs4929982 C T 5602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.258;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=6.457;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.957;QD=20.45;ReadPosRankSum=1.215;SOR=0.927 GT:AD:DP:GQ:PGT:PID:PL 0/1:130,144:274:99:0|1:2435910_G_GC:5631,0,6050 11 2869188 rs11601907 C T 5452.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5481,546,0 11 2905204 rs34289096 G GC 2800.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.645;SOR=0.739 GT:AD:DP:GQ:PL 0/1:112,114:228:99:2838,0,2731 11 2906165 . A AGCCGGG 3552.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0;DP=179;ExcessHet=3.0103;FS=6.121;MLEAC=1;MLEAF=0.5;MQ=61.08;MQRankSum=3.841;QD=22.07;ReadPosRankSum=-1.411;SOR=0.372 GT:AD:DP:GQ:PL 0/1:68,93:161:99:3590,0,2608 11 2906196 . ACCGCGACCGGAG A 1921.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.853;ClippingRankSum=0;DP=259;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.5;MQ=60.91;MQRankSum=-3.023;QD=8.62;ReadPosRankSum=4.687;SOR=0.932 GT:AD:DP:GQ:PL 0/1:162,61:223:99:1959,0,6616 11 2920666 rs365605 C T 392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.37;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=0.274;SOR=0.986 GT:AD:DP:GQ:PL 0/1:21,15:36:99:421,0,681 11 2924610 rs1048047 G A 2407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=-1.446;SOR=0.588 GT:AD:DP:GQ:PL 0/1:70,94:164:99:2436,0,1683 11 2929552 rs429886 A G 1462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.49;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.264;SOR=0.787 GT:AD:DP:GQ:PL 0/1:68,65:133:99:1491,0,1530 11 2930594 rs67769451 CG C 5604.73 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=31.85;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,176:178:99:5642,535,0 11 2999507 rs3814964 G T 1214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=5.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-2.396;SOR=0.342 GT:AD:DP:GQ:PL 0/1:57,56:113:99:1243,0,1335 11 3028140 rs729662 G A 815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.199;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.69;ReadPosRankSum=-0.649;SOR=0.736 GT:AD:DP:GQ:PL 0/1:80,42:122:99:844,0,1847 11 3050210 rs434114 A G 679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.225;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-1.252;SOR=0.948 GT:AD:DP:GQ:PL 0/1:27,28:55:99:708,0,614 11 3109426 rs10160757 T C 3413.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.47;SOR=1.39 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3442,306,0 11 3122817 rs7106225 A G 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=0.429;SOR=0.698 GT:AD:DP:GQ:PL 0/1:52,71:123:99:1741,0,1164 11 3123399 rs58090999 A G 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.03;ReadPosRankSum=0.402;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,67:114:99:0|1:3123381_A_G:2426,0,2146 11 3129027 rs3741350 G A 2922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-2.595;SOR=0.558 GT:AD:DP:GQ:PL 0/1:116,122:238:99:2951,0,2910 11 3141873 rs199671514 C T 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=4.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.301;SOR=0.4 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1625,0,2139 11 3249552 rs4391795 C T 3122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.476;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-0.489;SOR=0.536 GT:AD:DP:GQ:PL 0/1:148,133:281:99:3151,0,3383 11 3249984 rs12295710 C T 3401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.182;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-1.345;SOR=0.603 GT:AD:DP:GQ:PL 0/1:127,142:269:99:3430,0,2807 11 3381798 . G GA 122.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.058;ClippingRankSum=0;DP=134;ExcessHet=3.0103;FS=8.951;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.867;QD=1.29;ReadPosRankSum=-0.843;SOR=1.467 GT:AD:DP:GQ:PL 0/1:75,20:119:99:160,0,1550 11 3392811 rs72848292 G A 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.834;SOR=0.578 GT:AD:DP:GQ:PL 0/1:84,101:185:99:2464,0,2009 11 3661140 rs4910876 T C 9118.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,303:303:99:9147,909,0 11 3661585 rs3062849 A ATGG 9873.73 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=45.09;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,219:219:99:9911,670,0 11 3681519 rs2280134 T C 7908.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,268:268:99:7937,802,0 11 3723941 rs35488940 C T 6048.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6077,587,0 11 4103524 rs2304891 A G 5010.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5039,491,0 11 4104745 rs2289570 C G 3980.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.389 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4009,396,0 11 4141132 rs183484 C A 1556.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.8;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1585,168,0 11 4159457 rs9937 A G 3425.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.49;SOR=1.379 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,77:77:99:1|1:4159457_A_G:3454,234,0 11 4159466 rs1042858 G A 3620.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.1;SOR=1.206 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,84:84:99:1|1:4159457_A_G:3649,255,0 11 4388905 rs11031960 C T 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.968;SOR=0.753 GT:AD:DP:GQ:PL 0/1:51,65:116:99:1535,0,1158 11 4389404 rs11310407 AG A 1425.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.138;QD=12.4;ReadPosRankSum=-0.242;SOR=0.48 GT:AD:DP:GQ:PL 0/1:64,51:115:99:1463,0,1928 11 4409511 rs12805578 A G 3502.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.15 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3531,357,0 11 4566513 rs11032738 C A 1668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.61;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.379;SOR=0.566 GT:AD:DP:GQ:PL 0/1:77,71:148:99:1697,0,1937 11 4608262 rs12793957 A C 2825.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.46;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=6.287;MLEAC=1;MLEAF=0.5;MQ=51.91;MQRankSum=-13.51;QD=12.23;ReadPosRankSum=0.725;SOR=0.988 GT:AD:DP:GQ:PL 0/1:121,110:231:99:2854,0,2814 11 4608542 rs1847632 C T 2540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.716;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=11.62;MLEAC=1;MLEAF=0.5;MQ=54.12;MQRankSum=1.165;QD=10.63;ReadPosRankSum=-1.825;SOR=0.905 GT:AD:DP:GQ:PL 0/1:131,108:239:99:2569,0,3093 11 4615390 rs2010722 C T 3842.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.03;QD=30.99;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3871,372,0 11 4615508 rs2010719 C G 5462.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.43;QD=29.69;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5491,552,0 11 4661285 rs905871 A G 4912.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.19;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4941,444,0 11 4674575 rs3817098 G A 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4315,446,0 11 4703165 rs1123991 C A 4872.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4901,486,0 11 4791111 rs17324812 T C 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.133;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.475;SOR=0.436 GT:AD:DP:GQ:PL 0/1:43,55:98:99:1219,0,1031 11 4824878 rs2053116 A C 2365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.738;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.976;SOR=0.943 GT:AD:DP:GQ:PL 0/1:93,96:189:99:2394,0,2220 11 4825010 rs6578533 T A 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-1.655;SOR=0.848 GT:AD:DP:GQ:PL 0/1:107,86:193:99:1996,0,2716 11 4825225 rs7941731 A G 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.657;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-1.553;SOR=0.634 GT:AD:DP:GQ:PL 0/1:85,80:165:99:2069,0,2159 11 4842925 rs7114668 C A 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=0.378;SOR=0.733 GT:AD:DP:GQ:PL 0/1:76,49:125:99:1253,0,1988 11 4869649 rs12361955 G A 5380.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5409,533,0 11 4869906 rs7117260 A C 6853.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6882,672,0 11 4870139 rs11602455 G A 4436.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4465,462,0 11 4870261 rs11602499 G C 4920.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4949,481,0 11 4870298 rs11601065 T G 5561.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5590,560,0 11 4928866 rs7941509 C T 3079.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3108,294,0 11 4944986 rs12796015 A G 2098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.308;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-1.543;SOR=0.785 GT:AD:DP:GQ:PL 0/1:100,76:176:99:2127,0,2509 11 4945196 rs1378739 T G 7007.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,222:222:99:7036,665,0 11 4967400 rs2436782 G A 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.694;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=10.114;MLEAC=1;MLEAF=0.5;MQ=55.53;MQRankSum=-2.19;QD=9.27;ReadPosRankSum=-0.848;SOR=1.807 GT:AD:DP:GQ:PL 0/1:59,33:92:99:881,0,1455 11 4967468 rs28698374 G A 2306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.5;MQ=57.14;MQRankSum=3.54;QD=13.9;ReadPosRankSum=2.159;SOR=0.528 GT:AD:DP:GQ:PL 0/1:66,100:166:99:2335,0,1485 11 4967532 rs2595988 G C 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.509;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.5;MQ=53.02;MQRankSum=-4.666;QD=10.29;ReadPosRankSum=-0.59;SOR=0.984 GT:AD:DP:GQ:PL 0/1:98,76:174:99:1818,0,2348 11 4967651 rs76895759 A G 867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.56;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=7.796;MLEAC=1;MLEAF=0.5;MQ=49.54;MQRankSum=-7.047;QD=4.74;ReadPosRankSum=-0.534;SOR=1.19 GT:AD:DP:GQ:PL 0/1:139,44:183:99:896,0,3472 11 4967831 rs2595987 T C 504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.471;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.08;MQRankSum=-6.842;QD=4.04;ReadPosRankSum=-2.46;SOR=0.643 GT:AD:DP:GQ:PL 0/1:98,27:125:99:533,0,2459 11 4968198 rs3845246 C A 1436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.28;MLEAC=1;MLEAF=0.5;MQ=43.74;MQRankSum=-2.383;QD=9.09;ReadPosRankSum=1.625;SOR=0.844 GT:AD:DP:GQ:PL 0/1:93,65:158:99:1465,0,2335 11 4976086 rs2570572 C T 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.25;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.5;MQ=58.97;MQRankSum=-2.187;QD=8.43;ReadPosRankSum=0.327;SOR=0.814 GT:AD:DP:GQ:PL 0/1:104,71:175:99:1504,0,2530 11 4976241 rs2570571 C G 1545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.5;MQ=51.12;MQRankSum=-11.298;QD=8.73;ReadPosRankSum=-0.757;SOR=0.489 GT:AD:DP:GQ:PL 0/1:111,66:177:99:1574,0,3073 11 4976554 rs2595986 A G 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.839;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=51.68;MQRankSum=-4.119;QD=8.25;ReadPosRankSum=-1.82;SOR=0.639 GT:AD:DP:GQ:PL 0/1:105,60:165:99:1389,0,2696 11 4976811 rs28482315 C A 2046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=43.3;MQRankSum=-1.557;QD=10.55;ReadPosRankSum=-0.239;SOR=0.623 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2075,0,2486 11 5009549 rs72860827 A C 1313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.742;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.02;SOR=0.731 GT:AD:DP:GQ:PL 0/1:60,57:117:99:1342,0,1303 11 5012592 rs61880629 C T 4574.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.432 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4603,461,0 11 5020416 rs2445290 A G 3327.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.95;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3356,303,0 11 5020509 rs11035066 C T 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=1.591;SOR=0.655 GT:AD:DP:GQ:PL 0/1:89,67:156:99:1577,0,2341 11 5020799 rs10768448 C T 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.079;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=7.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-2.019;SOR=0.351 GT:AD:DP:GQ:PL 0/1:87,70:157:99:1700,0,2147 11 5020832 rs10768450 C T 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.569;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.267;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.214;SOR=0.374 GT:AD:DP:GQ:PL 0/1:66,69:135:99:1748,0,1816 11 5067984 rs2500016 A G 5160.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.3;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,155:155:99:5189,465,0 11 5068137 rs2500017 G A 6012.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6041,605,0 11 5068177 rs2500018 A T 5337.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5366,522,0 11 5068297 rs58664826 G A 1670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=0.471;SOR=0.683 GT:AD:DP:GQ:PL 0/1:83,74:157:99:1699,0,2188 11 5068431 rs17350764 G A 1460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.12;ReadPosRankSum=-0.035;SOR=0.677 GT:AD:DP:GQ:PL 0/1:110,70:180:99:1489,0,2778 11 5068661 rs2500019 A G 2960.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.48;SOR=1.068 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,79:79:99:1|1:5068661_A_G:2989,237,0 11 5068662 rs57026471 C T 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.31;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.273;SOR=0.479 GT:AD:DP:GQ:PGT:PID:PL 0/1:43,35:78:99:0|1:5068661_A_G:821,0,1041 11 5079946 rs2445332 C T 4238.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4267,432,0 11 5080068 rs2500052 G A 4666.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4695,459,0 11 5080234 rs2445333 T C 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=4.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.17;SOR=0.848 GT:AD:DP:GQ:PL 0/1:69,77:146:99:1949,0,1759 11 5080337 rs61746343 T C 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.068;SOR=0.634 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1623,0,2012 11 5152920 rs12289086 G A 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.152;SOR=0.564 GT:AD:DP:GQ:PL 0/1:29,29:58:99:711,0,682 11 5172786 rs10768611 A G 4624.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4653,469,0 11 5221645 rs11512276 C A,G 3329.77 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=26.43;SOR=0.725 GT:AD:DP:GQ:PL 1/2:0,60,66:126:99:3358,1893,1715,1467,0,1269 11 5221825 rs11036212 G A 3098.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3127,309,0 11 5247141 rs1609812 G A 3560.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3589,380,0 11 5247791 rs10768683 C G 3562.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=1.188 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3591,377,0 11 5248243 rs713040 A G 6265.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6294,596,0 11 5269582 rs371855998 AG A 7544.73 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.29;QD=46;SOR=0.995 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,164:164:99:1|1:5269582_AG_A:7582,509,0 11 5269584 rs1065686 T A 7553.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.05;QD=45.23;SOR=0.974 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,167:167:99:1|1:5269582_AG_A:7582,509,0 11 5269586 rs371890964 A AG 7544.73 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.93;QD=44.91;SOR=0.987 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,168:168:99:1|1:5269582_AG_A:7582,509,0 11 5270686 rs1061234 G A 286.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.35;QD=28.68;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,10:10:30:315,30,0 11 5322737 rs10837771 A G 5627.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5656,570,0 11 5323071 rs7118113 C T 4613.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4642,465,0 11 5344681 rs11036815 G A 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.251;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=1.293;SOR=0.832 GT:AD:DP:GQ:PL 0/1:69,54:123:99:1221,0,1675 11 5344772 rs10742622 T C 3436.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3465,338,0 11 5344847 rs10768793 A G 3054.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3083,291,0 11 5344902 rs7937237 C G 3057.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.36;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3086,267,0 11 5345128 rs10837814 G A 1802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-0.292;SOR=0.774 GT:AD:DP:GQ:PL 0/1:100,75:175:99:1831,0,2647 11 5345170 rs7952293 A G 5839.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5868,543,0 11 5345486 rs4910750 G A 3721.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3750,369,0 11 5364742 rs11036913 C T 1082.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=32.81;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1111,99,0 11 5372863 rs10837882 T A 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-1.215;SOR=0.708 GT:AD:DP:GQ:PL 0/1:57,80:137:99:1823,0,1321 11 5373114 rs5006888 G A 1290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.189;SOR=0.591 GT:AD:DP:GQ:PL 0/1:75,52:127:99:1319,0,2088 11 5373646 rs5024041 T C 999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.7;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=1.656;SOR=0.573 GT:AD:DP:GQ:PL 0/1:35,42:77:99:1028,0,890 11 5410934 rs1498467 T G 5121.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5150,503,0 11 5411031 rs1498468 C T 4792.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4821,459,0 11 5411239 rs1498469 T C 4682.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.86;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4711,441,0 11 5411395 rs9783355 C A 7436.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,201:201:99:7465,609,0 11 5411398 rs2736531 T G 2399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.756;SOR=0.44 GT:AD:DP:GQ:PL 0/1:100,99:199:99:2428,0,2498 11 5411579 rs10768906 G A 4572.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.4;SOR=1.234 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,103:103:99:1|1:5411579_G_A:4601,310,0 11 5411580 rs10768907 T C 4572.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.83;SOR=1.212 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,102:102:99:1|1:5411579_G_A:4601,310,0 11 5443442 rs2736590 G C 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=1.804;SOR=0.655 GT:AD:DP:GQ:PL 0/1:48,41:89:99:1041,0,1263 11 5443700 rs2736588 C T 1452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=0.452;SOR=0.685 GT:AD:DP:GQ:PL 0/1:102,65:167:99:1481,0,2696 11 5443739 rs2736587 T C 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.643;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.624;SOR=0.953 GT:AD:DP:GQ:PL 0/1:93,66:159:99:1733,0,2326 11 5443867 rs10838092 C T 1383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-0.666;SOR=0.951 GT:AD:DP:GQ:PL 0/1:80,60:140:99:1412,0,2029 11 5443887 rs10838093 T C 2655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.736;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=3.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.39;ReadPosRankSum=0.753;SOR=1.011 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,70:162:99:0|1:5443887_T_C:2684,0,3695 11 5443893 rs10838094 G A 2652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.036;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=5.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.98;ReadPosRankSum=1.392;SOR=1 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,71:166:99:0|1:5443887_T_C:2681,0,3717 11 5443963 rs10838095 G A 2046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.005;SOR=0.515 GT:AD:DP:GQ:PL 0/1:99,91:190:99:2075,0,2415 11 5444061 rs2736586 G A 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.381;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.221;SOR=0.72 GT:AD:DP:GQ:PL 0/1:70,79:149:99:2005,0,1709 11 5444136 rs2647574 C T 1665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.684;SOR=0.491 GT:AD:DP:GQ:PL 0/1:70,72:142:99:1694,0,1927 11 5444353 rs2647573 T C 1619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.471;SOR=0.572 GT:AD:DP:GQ:PL 0/1:58,68:126:99:1648,0,1448 11 5461991 rs1498486 C A 2434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=0.574;SOR=0.85 GT:AD:DP:GQ:PL 0/1:72,98:170:99:2463,0,1701 11 5474838 rs2030094 G T 4926.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.99;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4955,527,0 11 5475170 rs16931292 G C 4288.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4317,432,0 11 5475506 rs11037502 G A 4296.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4325,425,0 11 5510284 rs417425 A G 4400.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4429,435,0 11 5510341 rs404280 C T 3981.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.64;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4010,366,0 11 5510497 rs2467219 T C 5111.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5140,497,0 11 5510626 rs444878 T C 5598.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5627,565,0 11 5529865 rs186434 G A 7178.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7207,712,0 11 5536537 rs393044 A C 6419.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6448,621,0 11 5536848 rs2017433 G A 5724.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5753,582,0 11 5566030 rs1995158 A G 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=5.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.994;SOR=0.832 GT:AD:DP:GQ:PL 0/1:86,66:152:99:1555,0,2171 11 5566051 rs1995157 C A 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.937;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-0.591;SOR=0.772 GT:AD:DP:GQ:PL 0/1:83,60:143:99:1467,0,2047 11 5566112 rs1995156 C T 1276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-1.02;SOR=0.551 GT:AD:DP:GQ:PL 0/1:61,56:117:99:1305,0,1439 11 5566365 rs1566275 T C 1675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.359;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.514;SOR=0.947 GT:AD:DP:GQ:PL 0/1:77,64:141:99:1704,0,1896 11 5566489 rs10769054 C T 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.017;SOR=0.669 GT:AD:DP:GQ:PL 0/1:97,93:190:99:2220,0,2524 11 5602275 rs1077126 A G 3593.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3622,341,0 11 5602438 rs2341432 T A 4264.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4293,423,0 11 5602605 rs2341433 G A 7420.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.97;SOR=0.705 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,165:165:99:1|1:5602605_G_A:7449,512,0 11 5602615 rs2341434 A G 7474.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.71;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,171:171:99:1|1:5602605_G_A:7503,518,0 11 5602679 rs892336 T C 4399.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4428,429,0 11 5602790 rs2163946 A G 4104.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4133,396,0 11 5602928 rs10838375 G C 4218.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4247,414,0 11 5602968 rs10769086 G A 4052.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4081,402,0 11 5625847 rs3751006 A G 5474.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5503,554,0 11 5629607 rs10769121 G A 1986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.336;SOR=0.73 GT:AD:DP:GQ:PL 0/1:93,88:181:99:2015,0,2426 11 5631479 rs3740999 A C 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.449;SOR=0.909 GT:AD:DP:GQ:PL 0/1:89,90:179:99:2037,0,2017 11 5632212 rs10769124 G A 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.447;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.886;SOR=0.797 GT:AD:DP:GQ:PL 0/1:107,82:189:99:2014,0,2704 11 5664355 . A ATATATTT 1277.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.99;MQRankSum=-2.686;QD=21.3;ReadPosRankSum=1.78;SOR=0.656 GT:AD:DP:GQ:PL 0/1:38,22:69:99:1315,0,1722 11 5664356 rs59472811 T TATATATA 514.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.373;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.5;MQ=60.96;MQRankSum=1.31;QD=7.68;ReadPosRankSum=1.143;SOR=0.409 GT:AD:DP:GQ:PL 0/1:46,21:74:99:552,0,1791 11 5687331 rs141658892 A C 963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.716;SOR=0.339 GT:AD:DP:GQ:PL 0/1:42,47:89:99:992,0,1069 11 5700340 rs3740995 T C 2403.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2432,240,0 11 5701001 rs10838525 C T 8506.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8535,857,0 11 5717762 rs10838543 T C 6084.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6113,612,0 11 5718517 rs7935564 G A 3092.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3121,315,0 11 5719750 rs1063303 G C 3858.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3887,389,0 11 5719788 rs11038753 A G 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.404;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-1.104;SOR=0.9 GT:AD:DP:GQ:PL 0/1:47,45:92:99:1159,0,1173 11 5758062 rs7397032 T C 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.091;SOR=0.514 GT:AD:DP:GQ:PL 0/1:81,70:151:99:1818,0,2074 11 5758118 rs7396766 A C 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.101;SOR=0.544 GT:AD:DP:GQ:PL 0/1:76,67:143:99:1669,0,1916 11 5776287 rs7936512 C T 1870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.325;SOR=0.942 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1899,0,2221 11 5776470 rs7394584 T G 2538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.024;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.39;ReadPosRankSum=-0.106;SOR=0.775 GT:AD:DP:GQ:PGT:PID:PL 0/1:76,70:146:99:0|1:5776470_T_G:2567,0,3528 11 5776484 rs4910844 A T 2518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.555;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.99;ReadPosRankSum=0.189;SOR=0.777 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,67:140:99:0|1:5776470_T_G:2547,0,3468 11 5776623 rs7396938 A T 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.317;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=0.392;SOR=0.67 GT:AD:DP:GQ:PL 0/1:83,60:143:99:1395,0,1904 11 5809308 rs7934670 A T 1044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.16;ReadPosRankSum=0.23;SOR=1.023 GT:AD:DP:GQ:PL 0/1:82,46:128:99:1073,0,2259 11 5809477 rs10838637 A G 3311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.92;ReadPosRankSum=-0.081;SOR=0.788 GT:AD:DP:GQ:PL 0/1:92,130:222:99:3340,0,2193 11 5809673 rs10769224 C T 2772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.093;SOR=0.653 GT:AD:DP:GQ:PL 0/1:104,114:218:99:2801,0,2653 11 5809746 rs10742787 C T 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.87;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=1.005;SOR=0.61 GT:AD:DP:GQ:PL 0/1:80,99:179:99:2464,0,1948 11 5841856 rs4758435 C T 425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.92;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.74;ReadPosRankSum=-0.408;SOR=0.91 GT:AD:DP:GQ:PL 0/1:9,15:24:99:454,0,240 11 5862532 rs10742809 A C 2804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.843;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=0.962;SOR=0.71 GT:AD:DP:GQ:PL 0/1:92,107:199:99:2833,0,2203 11 5862653 rs4357719 T C 3236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.383;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=4.065;MLEAC=1;MLEAF=0.5;MQ=59.18;MQRankSum=-4.169;QD=12.03;ReadPosRankSum=0.028;SOR=0.492 GT:AD:DP:GQ:PL 0/1:132,137:269:99:3265,0,3103 11 5862731 rs10838719 A G 3034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.403;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.5;MQ=58.66;MQRankSum=-6.098;QD=12.39;ReadPosRankSum=-1.117;SOR=0.856 GT:AD:DP:GQ:PL 0/1:126,119:245:99:3063,0,3134 11 5862780 rs4362172 T C 2181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.086;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=58.33;MQRankSum=-6.068;QD=11.92;ReadPosRankSum=-1.248;SOR=0.75 GT:AD:DP:GQ:PL 0/1:101,82:183:99:2210,0,2462 11 5862845 rs4592451 A G 1619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.025;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=2.605;SOR=0.912 GT:AD:DP:GQ:PL 0/1:108,65:173:99:1648,0,2790 11 5862937 rs4495918 C A 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=0.972;SOR=0.57 GT:AD:DP:GQ:PL 0/1:92,49:141:99:1328,0,2649 11 5862984 rs10769272 G C 1535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=5.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.291;SOR=0.751 GT:AD:DP:GQ:PL 0/1:97,66:163:99:1564,0,2422 11 5863013 rs4362173 T C 1549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.759;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=7.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.414;SOR=0.636 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1578,0,1849 11 5863113 rs10742810 G A 1202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=1.597;SOR=0.604 GT:AD:DP:GQ:PL 0/1:43,51:94:99:1231,0,1023 11 5906048 rs4758168 G A 1715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.15;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=2.7;SOR=0.757 GT:AD:DP:GQ:PL 0/1:102,77:179:99:1744,0,2505 11 5906073 rs4757986 G T 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=5.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=0.021;SOR=0.491 GT:AD:DP:GQ:PL 0/1:93,78:171:99:1802,0,2427 11 5906192 rs1453435 A C 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=0.595;SOR=0.705 GT:AD:DP:GQ:PL 0/1:78,62:140:99:1475,0,1989 11 5906205 rs4757987 G A 1450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=1.127;SOR=0.692 GT:AD:DP:GQ:PL 0/1:81,62:143:99:1479,0,2196 11 5989223 rs61730422 G A 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-1.503;SOR=0.672 GT:AD:DP:GQ:PL 0/1:70,72:142:99:1683,0,1809 11 5989293 rs7113548 G A 1979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.564;SOR=0.545 GT:AD:DP:GQ:PL 0/1:85,78:163:99:2008,0,2178 11 5989415 rs7114672 C T 2860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.7;SOR=0.839 GT:AD:DP:GQ:PL 0/1:119,111:230:99:2889,0,3114 11 6007272 rs4237768 A G 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-0.078;SOR=0.836 GT:AD:DP:GQ:PL 0/1:89,78:167:99:1849,0,2073 11 6007613 rs4354673 T G 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.631;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-0.893;QD=10.58;ReadPosRankSum=-0.949;SOR=0.802 GT:AD:DP:GQ:PL 0/1:72,51:123:99:1330,0,1812 11 6007680 rs4436524 A G 1395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.214;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.2;MQRankSum=-4.143;QD=9.63;ReadPosRankSum=0.735;SOR=0.701 GT:AD:DP:GQ:PL 0/1:86,59:145:99:1424,0,2140 11 6007743 rs4436525 A G 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.305;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.5;MQ=58.95;MQRankSum=-4.205;QD=11.51;ReadPosRankSum=1.094;SOR=0.668 GT:AD:DP:GQ:PL 0/1:69,65:134:99:1571,0,1702 11 6023581 rs11040248 A G 4240.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4269,395,0 11 6023640 rs11040249 T C 4263.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4292,390,0 11 6023818 rs10839221 G A 5846.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5875,549,0 11 6048056 rs11040335 T C 3360.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3389,347,0 11 6221169 rs10839531 A G 4256.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4285,402,0 11 6221214 rs11040799 T A 3788.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3817,369,0 11 6221427 rs12417049 T C 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.59;SOR=0.537 GT:AD:DP:GQ:PL 0/1:68,55:123:99:1345,0,1742 11 6231731 rs10769671 C T 8818.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,298:298:99:8847,890,0 11 6239344 rs3750944 G A 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.483;SOR=0.598 GT:AD:DP:GQ:PL 0/1:95,77:172:99:1953,0,2508 11 6243804 rs3750945 A G 5285.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=1.297 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5314,507,0 11 6243843 rs3750946 C G 3960.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.44;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3989,345,0 11 6340525 rs12570 A T 2804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.742;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=1.321;SOR=0.749 GT:AD:DP:GQ:PL 0/1:133,114:247:99:2833,0,3287 11 6340706 rs1051992 A G 2306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.161;SOR=0.831 GT:AD:DP:GQ:PL 0/1:112,97:209:99:2335,0,2748 11 6341684 rs2682123 C G 7415.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,266:266:99:7444,797,0 11 6411934 . G GCGC 3183.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.655;ClippingRankSum=0;DP=303;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=-1.941;QD=11.05;ReadPosRankSum=2.18;SOR=0.826 GT:AD:DP:GQ:PL 0/1:165,123:288:99:3221,0,6099 11 6411935 rs3838786 TGCTGGC T,TGGCGCTGGCGCTGGC 8205.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.515;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.17;MQRankSum=0.52;QD=31.2;ReadPosRankSum=-0.067;SOR=0.785 GT:AD:DP:GQ:PL 1/2:13,123,127:265:99:8234,4589,5490,3429,0,5496 11 6415463 rs1050239 G A 1746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.145;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=1.045;SOR=0.754 GT:AD:DP:GQ:PL 0/1:93,73:166:99:1775,0,2293 11 6477831 rs10606 C T 4005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=4.965;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.869;SOR=0.491 GT:AD:DP:GQ:PL 0/1:158,168:326:99:4034,0,3853 11 6478619 rs16913748 G A 3086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.491;SOR=0.75 GT:AD:DP:GQ:PL 0/1:119,139:260:99:3115,0,2727 11 6519642 rs11604149 G A 3402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.673;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-1.089;SOR=0.509 GT:AD:DP:GQ:PL 0/1:125,140:265:99:3431,0,2938 11 6520015 rs11040899 G T 4863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.425;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-1.417;SOR=0.587 GT:AD:DP:GQ:PL 0/1:165,202:367:99:4892,0,4266 11 6520164 rs2555158 T A 2882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.958;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.826;SOR=0.768 GT:AD:DP:GQ:PL 0/1:107,112:219:99:2911,0,2733 11 6530278 rs10839568 C T 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.036;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.353;SOR=0.696 GT:AD:DP:GQ:PL 0/1:100,94:194:99:2192,0,2836 11 6532519 rs4758423 C T 2595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.841;SOR=0.665 GT:AD:DP:GQ:PL 0/1:126,115:241:99:2624,0,3052 11 6549779 rs4633449 A C 2456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.316;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=2.229;SOR=0.752 GT:AD:DP:GQ:PL 0/1:112,104:216:99:2485,0,2698 11 6549995 rs7480644 A G 5085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.384;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.9;ReadPosRankSum=-0.46;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,136:301:99:0|1:6549995_A_G:5114,0,8557 11 6550004 rs2344828 A G 5192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.664;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.54;ReadPosRankSum=-2.334;SOR=0.666 GT:AD:DP:GQ:PGT:PID:PL 0/1:170,144:314:99:0|1:6549995_A_G:5221,0,8641 11 6550309 rs2344829 G A 1824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.448;SOR=0.604 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1853,0,2160 11 6555365 rs7103810 A G 4834.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4863,454,0 11 6561270 rs10839577 A G 3056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.427;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.84;ReadPosRankSum=-0.856;SOR=0.615 GT:AD:DP:GQ:PL 0/1:88,118:206:99:3085,0,1856 11 6567591 rs145119715 C T 3138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=1.328;SOR=0.613 GT:AD:DP:GQ:PL 0/1:168,136:304:99:3167,0,4208 11 6567895 rs11268490 C CTGCCCTACTGCA 10124.7 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=47.53;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,213:215:99:10162,683,0 11 6568213 rs58186801 T C 2529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=0.306;SOR=0.528 GT:AD:DP:GQ:PL 0/1:83,100:183:99:2558,0,2014 11 6579539 rs10839583 A G 1670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.722;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.65;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.197;SOR=0.774 GT:AD:DP:GQ:PL 0/1:64,67:131:99:1699,0,1566 11 6585007 rs11040923 G A 2945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=1.104;SOR=0.487 GT:AD:DP:GQ:PL 0/1:99,120:219:99:2974,0,2359 11 6622714 rs2288283 G A 6372.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6401,643,0 11 6624617 rs12420389 T C 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.985;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=0.323;SOR=0.999 GT:AD:DP:GQ:PL 0/1:48,46:94:99:1303,0,1137 11 6630028 rs11314683 TC T 4174.73 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=32.36;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4212,388,0 11 6631016 rs2292195 C T 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.942;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=8.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.898;SOR=1.177 GT:AD:DP:GQ:PL 0/1:74,79:153:99:2100,0,1807 11 6631286 . C T 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.744;ClippingRankSum=0;DP=133;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=2.185;SOR=0.648 GT:AD:DP:GQ:PL 0/1:54,79:133:99:2081,0,1495 11 6632450 rs12451 C T 2032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=1.66;SOR=0.53 GT:AD:DP:GQ:PL 0/1:87,90:177:99:2061,0,2010 11 6637739 . ATT A,AT 3369.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=2.931;ClippingRankSum=0;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.16;MQRankSum=0.493;QD=23.08;ReadPosRankSum=0.467;SOR=0.585 GT:AD:DP:GQ:PL 1/2:13,73,60:184:99:3407,834,865,1623,0,1378 11 6643976 rs7122587 C T 3684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.64;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.208;SOR=0.699 GT:AD:DP:GQ:PL 0/1:157,153:310:99:3713,0,3929 11 6644600 rs72911011 C T 3740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.424;SOR=0.635 GT:AD:DP:GQ:PL 0/1:161,158:319:99:3769,0,3994 11 6647622 rs11827437 T C 2387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.295;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.03;ReadPosRankSum=-0.52;SOR=0.593 GT:AD:DP:GQ:PL 0/1:67,82:149:99:2416,0,1647 11 6648424 rs4758443 G A 3063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.774;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.42;SOR=0.704 GT:AD:DP:GQ:PL 0/1:142,118:260:99:3092,0,3519 11 6651810 rs2659872 A G 4091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.587;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.06;ReadPosRankSum=-0.477;SOR=0.65 GT:AD:DP:GQ:PL 0/1:142,149:291:99:4120,0,3235 11 6652618 rs2659871 C T 2213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.737;SOR=0.545 GT:AD:DP:GQ:PL 0/1:97,95:192:99:2242,0,2283 11 6655332 rs2659869 T A 2263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.47;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.646;SOR=0.762 GT:AD:DP:GQ:PL 0/1:108,90:198:99:2292,0,2549 11 6655433 rs997263 G A 3505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.261;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.149;SOR=0.534 GT:AD:DP:GQ:PL 0/1:159,160:319:99:3534,0,3902 11 6789929 rs11828782 C A 2704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-1.129;QD=12.29;ReadPosRankSum=-0.528;SOR=0.728 GT:AD:DP:GQ:PL 0/1:109,111:220:99:2733,0,2654 11 6790106 rs7102536 T C 1870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=0.744;SOR=0.669 GT:AD:DP:GQ:PL 0/1:94,82:176:99:1899,0,2165 11 6806496 rs11041022 T C 2356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.263;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.69;MQRankSum=0.354;QD=12.15;ReadPosRankSum=-0.182;SOR=0.715 GT:AD:DP:GQ:PL 0/1:101,93:194:99:2385,0,2397 11 6806827 rs2659880 G T 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.997;SOR=1.236 GT:AD:DP:GQ:PL 0/1:72,72:144:99:1823,0,1962 11 6807163 rs2659879 C G 2118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.197;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-1.141;QD=10.59;ReadPosRankSum=-0.379;SOR=0.54 GT:AD:DP:GQ:PL 0/1:107,93:200:99:2147,0,2414 11 6816778 rs866347 A G 5340.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5369,530,0 11 6891113 rs3930075 A G 2237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.5;MQ=56.05;MQRankSum=0.869;QD=11.66;ReadPosRankSum=-0.143;SOR=0.513 GT:AD:DP:GQ:PL 0/1:98,94:192:99:2266,0,2413 11 6891385 rs2741764 G A 2725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=0.947;QD=11.55;ReadPosRankSum=0.83;SOR=0.85 GT:AD:DP:GQ:PL 0/1:121,115:236:99:2754,0,3199 11 6891528 rs7117739 C G 2695.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=54.59;MQRankSum=-14.195;QD=10.74;ReadPosRankSum=0.256;SOR=0.629 GT:AD:DP:GQ:PL 0/1:139,112:251:99:2724,0,3542 11 6891605 rs10839631 A G 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.49;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.5;MQ=56.92;MQRankSum=-8.124;QD=10.67;ReadPosRankSum=0.075;SOR=0.88 GT:AD:DP:GQ:PL 0/1:110,80:190:99:2056,0,2912 11 6891758 rs7926083 A C 1726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=11.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=1.63;SOR=0.483 GT:AD:DP:GQ:PL 0/1:82,72:154:99:1755,0,2061 11 6913127 rs2741804 A G 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.062;SOR=0.536 GT:AD:DP:GQ:PL 0/1:82,103:185:99:2499,0,1895 11 6913243 rs1965207 T C 2090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.694;SOR=0.562 GT:AD:DP:GQ:PL 0/1:77,89:166:99:2119,0,1918 11 6913244 rs1965208 A G 6536.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.68;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,169:169:99:6565,508,0 11 6942476 rs10839658 C A 1790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-1.307;SOR=0.679 GT:AD:DP:GQ:PL 0/1:89,75:164:99:1819,0,2353 11 6942695 rs12806437 C T 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.32;SOR=0.827 GT:AD:DP:GQ:PL 0/1:98,107:205:99:2668,0,2286 11 6942726 rs10839659 G C 2022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=2.033;SOR=0.663 GT:AD:DP:GQ:PL 0/1:107,81:188:99:2051,0,2950 11 6953858 rs11041108 A G 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.862;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-1.636;SOR=0.679 GT:AD:DP:GQ:PL 0/1:84,68:152:99:1727,0,2083 11 6976988 rs2239731 A T 5462.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5491,587,0 11 7022160 rs2857919 A G 5623.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5652,572,0 11 7022531 rs1156525 A C 2409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.541;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.694;SOR=0.784 GT:AD:DP:GQ:PL 0/1:93,93:186:99:2438,0,2320 11 7059960 rs12801277 A C 3592.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3621,347,0 11 7059981 rs61063081 G A 1297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.539;SOR=0.593 GT:AD:DP:GQ:PL 0/1:74,56:130:99:1326,0,1851 11 7060092 rs16921697 A G 1436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.323;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=-0.904;SOR=0.812 GT:AD:DP:GQ:PL 0/1:48,54:102:99:1465,0,1076 11 7063755 rs7123944 C T 4339.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4368,441,0 11 7071031 rs1552726 G A 2498.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2527,243,0 11 7091569 rs17280682 C T 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.513;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.711;SOR=0.839 GT:AD:DP:GQ:PL 0/1:44,43:87:99:964,0,970 11 7110548 rs11041170 C T 4471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=5.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.251;SOR=0.498 GT:AD:DP:GQ:PL 0/1:198,180:378:99:4500,0,5027 11 7110751 rs11041171 A G 8186.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8215,759,0 11 7324475 rs4412741 T C 5722.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5751,561,0 11 7507182 rs118163706 A G 1330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=-0.579;SOR=0.551 GT:AD:DP:GQ:PL 0/1:76,62:138:99:1359,0,1783 11 7509566 rs12805648 A T 773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.691;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=1.311;SOR=0.547 GT:AD:DP:GQ:PL 0/1:57,37:94:99:802,0,1334 11 7531229 rs76280703 G A 1714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.475;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-0.005;SOR=0.568 GT:AD:DP:GQ:PL 0/1:111,77:188:99:1743,0,2626 11 7656809 rs11041490 G A 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=6.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-1.962;SOR=0.391 GT:AD:DP:GQ:PL 0/1:59,69:128:99:1547,0,1321 11 7662732 rs4643071 C T 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.08;ReadPosRankSum=-0.099;SOR=0.494 GT:AD:DP:GQ:PL 0/1:100,63:163:99:1345,0,2397 11 7670440 rs4758209 A G 3827.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.77;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3856,427,0 11 7673015 rs5864 G A 3270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=3.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.096;SOR=0.51 GT:AD:DP:GQ:PL 0/1:116,146:262:99:3299,0,2773 11 7686596 rs13172 G A 1026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=0.487;SOR=0.76 GT:AD:DP:GQ:PL 0/1:93,50:143:99:1055,0,2317 11 7686602 rs16411 G GTGTT 1826.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.76;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.946;SOR=0.745 GT:AD:DP:GQ:PL 0/1:92,49:141:99:1864,0,4764 11 7686674 rs13854 T C 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.123;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.025;SOR=0.823 GT:AD:DP:GQ:PL 0/1:105,86:191:99:2163,0,2354 11 7687181 rs144589101 A G 440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.057;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.32;ReadPosRankSum=-0.636;SOR=0.955 GT:AD:DP:GQ:PL 0/1:35,18:53:99:469,0,953 11 7687669 rs12796110 A C 609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.431;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.219;SOR=1.34 GT:AD:DP:GQ:PL 0/1:33,23:56:99:638,0,726 11 7687715 rs12801394 T C 926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.152;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=3.254;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-0.617;SOR=0.99 GT:AD:DP:GQ:PL 0/1:34,36:70:99:955,0,750 11 7716855 rs4528317 T A 3203.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3232,309,0 11 7717219 rs111491832 A T 54.28 PASS AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=18.09;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,3:3:9:82,9,0 11 7721870 rs10839849 G A 4768.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4797,501,0 11 7727886 rs7927138 C T 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.288;SOR=0.841 GT:AD:DP:GQ:PL 0/1:69,52:121:99:1148,0,1698 11 7817512 rs7931212 G T 813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.75;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-1.457;SOR=0.516 GT:AD:DP:GQ:PL 0/1:38,33:71:99:842,0,1153 11 7817538 rs7949771 T C 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.747;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=0.108;SOR=0.401 GT:AD:DP:GQ:PL 0/1:51,40:91:99:1166,0,1393 11 7817665 rs72484720 T C 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-1.349;QD=11.89;ReadPosRankSum=0.755;SOR=0.89 GT:AD:DP:GQ:PL 0/1:97,98:195:99:2346,0,2399 11 7817852 rs76615008 C G 3072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.62;ReadPosRankSum=-1.078;SOR=0.86 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,79:149:99:0|1:7817852_C_G:3101,0,3595 11 7817856 rs78460198 C T 3043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=3.86;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.71;ReadPosRankSum=-1.238;SOR=0.849 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,78:147:99:0|1:7817852_C_G:3072,0,3540 11 7817959 rs73406603 G A 1735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.081;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=1.276;SOR=0.836 GT:AD:DP:GQ:PL 0/1:84,70:154:99:1764,0,2077 11 7818056 rs73406604 T C 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=0.095;SOR=0.748 GT:AD:DP:GQ:PL 0/1:81,79:160:99:1959,0,1951 11 7818151 rs73406606 G A 1877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-1.941;SOR=0.681 GT:AD:DP:GQ:PL 0/1:97,79:176:99:1906,0,2551 11 7818190 rs73406607 C T 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.9;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=1.621;SOR=0.71 GT:AD:DP:GQ:PL 0/1:108,75:183:99:1771,0,2598 11 7818313 rs73406609 C T 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.611;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=0.322;SOR=0.794 GT:AD:DP:GQ:PL 0/1:75,44:119:99:1004,0,2343 11 7818383 rs138967151 G GATATGGTTACCAGGTAGATGC 1076.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.611;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-2.129;SOR=1.112 GT:AD:DP:GQ:PL 0/1:76,30:106:99:1114,0,3516 11 7847208 rs1482791 T C 1940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.152;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.516;SOR=0.8 GT:AD:DP:GQ:PL 0/1:79,77:156:99:1969,0,1819 11 7847466 rs1482792 A G 2914.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.9;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2943,237,0 11 7847472 rs1482793 C T 967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.101;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-1.124;SOR=1.091 GT:AD:DP:GQ:PL 0/1:36,39:75:99:996,0,873 11 7847523 rs1482794 T A 547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.353;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=0.735;SOR=0.765 GT:AD:DP:GQ:PL 0/1:31,25:56:99:576,0,733 11 7949350 rs4758258 A G 4626.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4655,459,0 11 7949707 rs111488559 A G 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.02;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.464;SOR=0.738 GT:AD:DP:GQ:PL 0/1:57,44:101:99:1219,0,1553 11 7949791 rs7933807 A C 3164.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.63;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3193,291,0 11 7949860 rs7928451 G A 3937.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3966,410,0 11 8014479 rs4758267 C T 1984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.908;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.45;MQRankSum=-1.04;QD=10.13;ReadPosRankSum=0.631;SOR=0.67 GT:AD:DP:GQ:PL 0/1:109,87:196:99:2013,0,2557 11 8103104 rs11041733 G T 2389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=10.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=2.886;SOR=0.515 GT:AD:DP:GQ:PL 0/1:69,106:175:99:2418,0,1457 11 8115699 rs4758289 T C 3298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.242;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.195;SOR=0.751 GT:AD:DP:GQ:PL 0/1:135,143:278:99:3327,0,3079 11 8117228 rs11041739 A G 6208.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6237,612,0 11 8132301 rs11826236 C T 2032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=-0.068;SOR=0.682 GT:AD:DP:GQ:PL 0/1:63,82:145:99:2061,0,1619 11 8159857 rs55990541 C T 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=2.659;SOR=0.852 GT:AD:DP:GQ:PL 0/1:41,33:74:99:805,0,1041 11 8159892 rs10839976 G T 616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.92;SOR=0.614 GT:AD:DP:GQ:PL 0/1:31,27:58:99:645,0,842 11 8251921 rs3750952 G C 2096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.587;SOR=0.722 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2125,0,2362 11 8414229 rs35296353 G T 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-0.718;SOR=0.892 GT:AD:DP:GQ:PL 0/1:82,76:158:99:1817,0,2106 11 8435077 rs3751095 C T 4304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=6.843;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=-1.362;QD=21.1;ReadPosRankSum=0.878;SOR=1.112 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,110:204:99:0|1:8435077_C_T:4333,0,4854 11 8435078 rs3751096 A C 4304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=6.883;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=-1.347;QD=21;ReadPosRankSum=1.361;SOR=1.14 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,110:205:99:0|1:8435077_C_T:4333,0,4854 11 8483335 rs1900273 G A 2234.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=1.3 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2263,231,0 11 8486310 rs1446464 C A 1889.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1918,209,0 11 8494843 . T TA 46.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.78;ReadPosRankSum=-2.502;SOR=0.72 GT:AD:DP:GQ:PL 0/1:50,10:60:84:84,0,1009 11 8642123 . C A 2467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0;DP=270;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-0.962;SOR=0.603 GT:AD:DP:GQ:PL 0/1:154,115:269:99:2496,0,3912 11 8646237 rs12803166 G T 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.53;SOR=0.817 GT:AD:DP:GQ:PL 0/1:78,72:150:99:1714,0,2017 11 8662090 rs11042022 T C 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.583;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.283;SOR=0.839 GT:AD:DP:GQ:PL 0/1:47,54:101:99:1158,0,809 11 8662516 rs11042023 T C 3615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=-1.208;SOR=0.792 GT:AD:DP:GQ:PL 0/1:109,139:248:99:3644,0,2585 11 8706406 rs4670 T G 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.92;MQRankSum=-0.426;QD=10.25;ReadPosRankSum=1.276;SOR=0.684 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1515,0,2026 11 8751640 rs3812762 G C 7652.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.13;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7681,693,0 11 8752598 rs61751342 G C 3573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=1.809;SOR=0.592 GT:AD:DP:GQ:PL 0/1:130,141:271:99:3602,0,3315 11 8788168 rs10743089 A T 1713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=5.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=0.853;SOR=0.98 GT:AD:DP:GQ:PL 0/1:79,80:159:99:1742,0,1850 11 8788225 rs10734637 A C 1710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.83;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.245;SOR=0.639 GT:AD:DP:GQ:PL 0/1:64,77:141:99:1739,0,1424 11 8933064 rs1133833 G A 1895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.31;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=7.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.928;SOR=1.199 GT:AD:DP:GQ:PL 0/1:112,74:186:99:1924,0,3053 11 8938819 rs1883097 T C 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.305;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=0.176;SOR=0.703 GT:AD:DP:GQ:PL 0/1:26,29:55:99:748,0,653 11 8938934 rs2016844 C T 851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.039;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=6.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-0.308;SOR=0.476 GT:AD:DP:GQ:PL 0/1:30,34:64:99:880,0,662 11 8942942 rs2653601 C T 2914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.692;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.821;SOR=0.755 GT:AD:DP:GQ:PL 0/1:115,127:242:99:2943,0,2527 11 8942999 rs2568023 G A 5747.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5776,596,0 11 8947021 rs2653588 A G 4959.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4988,485,0 11 8947179 rs2568077 G A 3003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.717;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=1.307;SOR=0.724 GT:AD:DP:GQ:PL 0/1:114,130:244:99:3032,0,2518 11 8947283 rs3751066 G C 3253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=0.938;SOR=0.774 GT:AD:DP:GQ:PL 0/1:129,128:257:99:3282,0,3252 11 8947586 rs11042127 C G 2844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=0.811;SOR=0.733 GT:AD:DP:GQ:PL 0/1:97,113:210:99:2873,0,2416 11 8948680 rs3751065 A T 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.862;SOR=0.941 GT:AD:DP:GQ:PL 0/1:86,88:174:99:2047,0,1921 11 8959370 rs2742505 G A 3172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.187;SOR=0.709 GT:AD:DP:GQ:PL 0/1:115,137:252:99:3201,0,2697 11 8959511 rs4910179 T G 2743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.076;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-2.039;SOR=0.707 GT:AD:DP:GQ:PL 0/1:131,109:240:99:2772,0,3194 11 8959545 rs4909951 C A 2813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.716;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.502;SOR=0.718 GT:AD:DP:GQ:PL 0/1:129,112:241:99:2842,0,3196 11 8977830 rs2568068 A G 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.871;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=0.651;SOR=0.954 GT:AD:DP:GQ:PL 0/1:68,53:121:99:1223,0,1570 11 9051475 rs3751057 G C 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=0.312;SOR=0.475 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1741,0,2203 11 9052423 rs7395988 A C 4707.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4736,476,0 11 9072140 rs3751052 C T 1041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=1.733;SOR=0.907 GT:AD:DP:GQ:PL 0/1:69,52:121:99:1070,0,1599 11 9087533 rs2003906 A G 2555.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.582 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2584,252,0 11 9171775 rs7123970 A G 4103.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=1.485 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4132,385,0 11 9192336 rs59591821 TAC T 3809.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.683;QD=18.77;ReadPosRankSum=0.249;SOR=0.942 GT:AD:DP:GQ:PL 0/1:75,128:240:99:3847,0,1887 11 9225486 rs952374 C G 2705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.064;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.089;SOR=0.674 GT:AD:DP:GQ:PL 0/1:132,108:240:99:2734,0,3400 11 9316937 rs4601780 G A 562.77 PASS AC=2;AF=1;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,19:19:57:591,57,0 11 9406349 rs4606477 T C 3394.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3423,327,0 11 9537904 rs10743108 G C 4094.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4123,393,0 11 9603236 rs4370932 C T 1695.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.238 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1724,171,0 11 9735192 rs1496477 G T 1232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.414;SOR=0.643 GT:AD:DP:GQ:PL 0/1:75,51:126:99:1261,0,2078 11 9746201 rs1695613 G A 865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.573;SOR=0.227 GT:AD:DP:GQ:PL 0/1:36,39:75:99:894,0,959 11 9749645 rs397686 A C 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=0.361;SOR=0.504 GT:AD:DP:GQ:PL 0/1:63,87:150:99:2058,0,1318 11 9754221 rs360157 C T 6940.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=1 GT:AD:DP:GQ:PL 1/1:0,236:236:99:6969,707,0 11 9769562 rs415895 C G 5770.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5799,557,0 11 9812236 rs2645029 G A 2530.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=1.429 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2559,260,0 11 10014085 rs79470805 T C 3211.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3240,324,0 11 10521749 rs114718879 C T 1861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.831;SOR=0.708 GT:AD:DP:GQ:PL 0/1:109,85:194:99:1890,0,4024 11 10521764 rs3741041 T C 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-0.426;SOR=0.631 GT:AD:DP:GQ:PL 0/1:81,105:186:99:2503,0,3022 11 10555589 rs1065052 A G 1338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.708;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=7.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.033;SOR=1.206 GT:AD:DP:GQ:PL 0/1:55,55:110:99:1367,0,1308 11 10647702 rs2241489 G A 4267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.654;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.114;SOR=0.651 GT:AD:DP:GQ:PL 0/1:163,180:343:99:4296,0,4132 11 10650329 rs2278125 C T 1771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.485;SOR=0.854 GT:AD:DP:GQ:PL 0/1:107,84:191:99:1800,0,2505 11 10655609 rs2162044 C T 2311.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2340,246,0 11 10655623 rs11042902 C T 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.046;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=-0.631;SOR=0.342 GT:AD:DP:GQ:PL 0/1:26,41:67:99:1019,0,566 11 10715124 rs10770136 T C 4359.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4388,429,0 11 10786142 rs3736326 C T 1501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.182;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.68;ReadPosRankSum=-0.648;SOR=0.647 GT:AD:DP:GQ:PL 0/1:104,69:173:99:1530,0,2452 11 10820663 rs71034785 T TA 1079.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.114;QD=12.41;ReadPosRankSum=-0.205;SOR=0.449 GT:AD:DP:GQ:PL 0/1:27,60:118:99:1117,0,414 11 10822202 rs4910190 G A 5595.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5624,537,0 11 10822350 rs7951708 C T 4437.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4466,436,0 11 10823576 . C CACACTCCTAAAATAGTTTCATGTTTTAATAGCAAATGAAATCACATATATTGCATAATTTAACATTTGTTGCCTAA 3101.73 PASS AC=2;AF=1;AN=2;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=387.72;SOR=1.863 GT:AD:DP:GQ:PL 1/1:0,8:8:99:3139,200,0 11 10828361 rs10743151 C A 3607.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3636,378,0 11 11292700 rs10831567 G C 1964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.52;SOR=0.485 GT:AD:DP:GQ:PL 0/1:66,81:147:99:1993,0,1541 11 11354393 rs901554 A G 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-0.146;SOR=0.619 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1444,0,1874 11 11373508 rs7948121 T C 4576.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.56;QD=35.21;SOR=1.9 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4605,391,0 11 11373587 rs7945066 A G 10466.8 PASS AC=2;AF=1;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.37;QD=29.99;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,349:349:99:10495,1046,0 11 11373635 rs1056963 C T 12412.8 PASS AC=2;AF=1;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.62;QD=29.62;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,419:419:99:12441,1256,0 11 11373808 rs1056951 T G 11230.8 PASS AC=2;AF=1;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.18;QD=30.03;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,374:374:99:11259,1118,0 11 11373925 rs4243927 A C 8723.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8752,789,0 11 11373960 rs2071461 C T 3204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-0.235;QD=11.13;ReadPosRankSum=-1.063;SOR=0.776 GT:AD:DP:GQ:PL 0/1:160,128:288:99:3233,0,4104 11 11374016 rs2896586 T A 9565.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=30.18;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,317:317:99:9594,950,0 11 11374269 rs2071460 A G 4608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-2.401;SOR=0.658 GT:AD:DP:GQ:PL 0/1:175,178:353:99:4637,0,4326 11 11374283 rs2896585 T G 11431.8 PASS AC=2;AF=1;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.72;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,339:339:99:11460,1017,0 11 11913585 rs11022079 G T 3770.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3799,393,0 11 11944265 rs72857625 A G 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.867;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=7.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=0.315;SOR=1.547 GT:AD:DP:GQ:PL 0/1:41,46:87:99:1263,0,863 11 11976628 rs7933089 G A 1792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=1.447;SOR=0.668 GT:AD:DP:GQ:PL 0/1:77,74:151:99:1821,0,1904 11 11977573 rs2307073 T C 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.401;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.12;SOR=1.105 GT:AD:DP:GQ:PL 0/1:63,49:112:99:1209,0,1548 11 11986061 rs3206824 T C 2924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.806;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=3.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.551;SOR=0.918 GT:AD:DP:GQ:PL 0/1:133,121:254:99:2953,0,3215 11 12183846 rs28625145 C T 2695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.687;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.615;SOR=0.604 GT:AD:DP:GQ:PL 0/1:126,114:240:99:2724,0,3489 11 12225946 rs3763823 T G 6129.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6158,612,0 11 12229655 rs2279390 T G 1131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.047;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.345;SOR=0.693 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1160,0,1462 11 12315186 rs10741578 G A 2451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-0.37;SOR=0.462 GT:AD:DP:GQ:PL 0/1:132,112:244:99:2480,0,3141 11 12315407 rs10741579 G C 7735.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7764,743,0 11 12315716 rs1493951 C T 7843.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7872,759,0 11 12315848 rs1493952 C T 2670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.219;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-1.519;SOR=0.656 GT:AD:DP:GQ:PL 0/1:116,109:225:99:2699,0,2908 11 12315891 rs1493953 G A 6898.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6927,661,0 11 12315915 rs1493954 A G 3228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.789;SOR=0.677 GT:AD:DP:GQ:PL 0/1:131,136:267:99:3257,0,3282 11 12316344 . G GCTCCTC 1547.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0;DP=282;ExcessHet=3.0103;FS=8.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=0.129;SOR=1.276 GT:AD:DP:GQ:PL 0/1:117,82:211:99:1585,0,4817 11 12316389 rs3812754 A C 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.45;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.3;ReadPosRankSum=1.369;SOR=0.487 GT:AD:DP:GQ:PL 0/1:132,91:223:99:1879,0,4985 11 12903443 rs2304733 C T 3916.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3945,399,0 11 13410371 rs17452383 A G 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.687;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.3;ReadPosRankSum=0.208;SOR=0.446 GT:AD:DP:GQ:PL 0/1:81,50:131:99:1115,0,1884 11 13410690 rs3833472 TGAAA T 1474.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.21;ReadPosRankSum=0.071;SOR=0.503 GT:AD:DP:GQ:PL 0/1:42,39:81:99:1512,0,1972 11 13461457 rs72857043 C A 1125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.876;SOR=0.495 GT:AD:DP:GQ:PL 0/1:46,47:93:99:1154,0,1192 11 13984583 rs3761859 C T 6300.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6329,631,0 11 14101493 rs5789820 G GC 5959.73 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.02;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5997,484,0 11 14157048 rs373179278 C T 1675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.168;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.603;SOR=0.677 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1704,0,2091 11 14501267 . GA G 109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0;DP=79;ExcessHet=3.0103;FS=6.436;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.204;QD=2.07;ReadPosRankSum=-1.563;SOR=1.46 GT:AD:DP:GQ:PL 0/1:40,13:69:99:138,0,1091 11 14515997 . ATT A 293.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.68;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=3.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.99;ReadPosRankSum=-0.056;SOR=0.242 GT:AD:DP:GQ:PL 0/1:30,12:42:99:331,0,1070 11 14516004 rs201780513 T TAAA 304.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=5.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=1.181;SOR=0.184 GT:AD:DP:GQ:PL 0/1:27,10:37:99:342,0,1094 11 14810762 rs4757268 A G 2458.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2487,251,0 11 14913575 rs12794714 G A 2603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.135;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=0.165;SOR=0.907 GT:AD:DP:GQ:PL 0/1:95,99:194:99:2632,0,2393 11 14991539 rs5239 T C 7234.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7263,711,0 11 15199957 rs1714376 T C 5321.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5350,554,0 11 15243047 rs61745838 G A 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=2.737;SOR=0.638 GT:AD:DP:GQ:PL 0/1:83,85:168:99:2063,0,2091 11 16133413 rs4617548 A G 2252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=-1.078;SOR=0.679 GT:AD:DP:GQ:PL 0/1:67,95:162:99:2281,0,1421 11 17035718 rs61881311 A G 7426.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7455,707,0 11 17111272 rs10832733 A G 2447.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.32 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2476,248,0 11 17118687 rs11604561 T C 762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.92;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-1.437;SOR=0.804 GT:AD:DP:GQ:PL 0/1:38,38:76:99:791,0,871 11 17172133 rs2302511 T C 2970.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2999,291,0 11 17333663 rs2521998 G A 1278.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1307,131,0 11 17351683 rs757081 C G 651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.764;SOR=1.061 GT:AD:DP:GQ:PL 0/1:33,26:59:99:680,0,927 11 17388538 rs142133579 A AT 862.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.325;SOR=0.992 GT:AD:DP:GQ:PL 0/1:31,39:70:99:900,0,595 11 17408630 rs5215 C T 6719.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6748,646,0 11 17409069 rs5218 G A 2536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-0.607;SOR=0.717 GT:AD:DP:GQ:PL 0/1:89,101:190:99:2565,0,2278 11 17409572 rs5219 T C 5507.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5536,561,0 11 17418477 rs757110 C A 8580.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.915;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.32;ReadPosRankSum=0.965;SOR=0.332 GT:AD:DP:GQ:PL 1/1:1,282:283:99:8609,838,0 11 17419279 rs1799859 C T 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.197;SOR=0.649 GT:AD:DP:GQ:PL 0/1:126,113:239:99:2621,0,3183 11 17428163 rs113873225 G A 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-1.485;SOR=1.028 GT:AD:DP:GQ:PL 0/1:88,83:171:99:1923,0,2034 11 17429922 rs2106865 T C 3466.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.487 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3495,336,0 11 17448704 rs1799854 G A 3865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.808;SOR=0.705 GT:AD:DP:GQ:PL 0/1:158,174:332:99:3894,0,3710 11 17484971 rs2301703 G A 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.571;SOR=0.673 GT:AD:DP:GQ:PL 0/1:74,61:135:99:1440,0,1698 11 17496516 rs1048099 A G 7196.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7225,731,0 11 17517235 rs10832795 A G 3194.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=29.58;SOR=1.631 GT:AD:DP:GQ:PL 1/1:0,108:110:99:3223,323,0 11 17542439 rs2240487 T C 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.34;ReadPosRankSum=-0.266;SOR=0.691 GT:AD:DP:GQ:PL 0/1:60,70:130:99:1892,0,1519 11 17553105 rs2041027 G A 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.089;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=1.929;SOR=0.591 GT:AD:DP:GQ:PL 0/1:96,82:178:99:1941,0,2655 11 17615586 rs12792504 C G 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.323;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-1.559;SOR=0.679 GT:AD:DP:GQ:PL 0/1:86,60:146:99:1585,0,2187 11 17627613 rs7934079 G C 3009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.5;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=1.109;SOR=0.848 GT:AD:DP:GQ:PL 0/1:136,127:263:99:3038,0,3544 11 17899795 rs35473390 TA T 283.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.077;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.91;ReadPosRankSum=2.278;SOR=0.76 GT:AD:DP:GQ:PL 0/1:30,18:53:99:321,0,585 11 17981047 rs211146 C T 4067.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.931;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.604;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.58;ReadPosRankSum=-0.594;SOR=0.677 GT:AD:DP:GQ:PL 1/1:1,132:133:99:4096,389,0 11 18102014 rs35394666 G A 317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.148;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=3.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.04;ReadPosRankSum=0.742;SOR=1.153 GT:AD:DP:GQ:PL 0/1:45,18:63:99:346,0,1113 11 18108512 rs35525096 T C 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.404;SOR=0.778 GT:AD:DP:GQ:PL 0/1:59,68:127:99:1495,0,1277 11 18158993 rs12291017 T C 3543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=1.11;SOR=0.716 GT:AD:DP:GQ:PL 0/1:136,140:276:99:3572,0,3537 11 18159169 rs2468839 A G 9094.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,313:313:99:9123,938,0 11 18159254 rs4274188 A G 10988.8 PASS AC=2;AF=1;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,353:353:99:11017,1058,0 11 18159455 rs72863191 T C 3677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.22;SOR=0.831 GT:AD:DP:GQ:PL 0/1:153,153:306:99:3706,0,3886 11 18194827 rs2468774 C G 3589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=4.229;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-1.537;QD=13.86;ReadPosRankSum=0.531;SOR=0.494 GT:AD:DP:GQ:PL 0/1:114,145:259:99:3618,0,2950 11 18194878 rs2445180 T G 4198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.966;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-1.577;QD=13.68;ReadPosRankSum=-0.107;SOR=0.597 GT:AD:DP:GQ:PL 0/1:139,168:307:99:4227,0,3251 11 18194964 rs1869788 A G 3717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-1;QD=12.23;ReadPosRankSum=1.149;SOR=0.721 GT:AD:DP:GQ:PL 0/1:153,151:304:99:3746,0,3485 11 18195051 rs2445179 T C 7950.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7979,744,0 11 18195448 rs4630269 C T 3217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.61;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.12;SOR=0.604 GT:AD:DP:GQ:PL 0/1:169,134:303:99:3246,0,4090 11 18253176 rs2460827 C T 2136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.399;SOR=0.761 GT:AD:DP:GQ:PL 0/1:130,99:229:99:2165,0,3140 11 18267463 rs74872559 A G 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=438;ExcessHet=3.0103;FS=6.509;MLEAC=1;MLEAF=0.5;MQ=45.43;MQRankSum=-7.683;QD=3.29;ReadPosRankSum=2.173;SOR=1.335 GT:AD:DP:GQ:PGT:PID:PL 0/1:376,62:438:99:0|1:18267463_A_G:1469,0,18623 11 18267478 rs79620496 G A 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0;DB;DP=448;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.5;MQ=44.17;MQRankSum=-7.871;QD=3.7;ReadPosRankSum=0.113;SOR=0.875 GT:AD:DP:GQ:PGT:PID:PL 0/1:376,72:448:99:0|1:18267463_A_G:1686,0,18548 11 18267600 rs200930008 A C 118.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.945;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=24.155;MLEAC=1;MLEAF=0.5;MQ=44.46;MQRankSum=-6.035;QD=0.49;ReadPosRankSum=-1.627;SOR=3.03 GT:AD:DP:GQ:PL 0/1:213,28:241:99:147,0,5849 11 18290737 rs145097411 T G 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.546;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.96;MQRankSum=0.069;QD=11.54;ReadPosRankSum=2.345;SOR=0.709 GT:AD:DP:GQ:PL 0/1:73,61:134:99:1575,0,1721 11 18290859 rs1136743 C T 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.978;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=11.152;MLEAC=1;MLEAF=0.5;MQ=41.27;MQRankSum=-2.433;QD=22.53;ReadPosRankSum=-0.186;SOR=0.258 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,49:85:99:0|1:18290859_C_T:1943,0,1363 11 18290874 rs1136747 T C 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.574;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=7.062;MLEAC=1;MLEAF=0.5;MQ=41.99;MQRankSum=-2.623;QD=21.87;ReadPosRankSum=0.216;SOR=0.423 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,50:88:99:0|1:18290859_C_T:1953,0,1379 11 18290880 rs28720026 C G 4043.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.28;QD=41.26;SOR=0.82 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,98:98:99:1|1:18290859_C_T:4072,298,0 11 18291321 rs12218 T C 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-1.644;SOR=0.721 GT:AD:DP:GQ:PL 0/1:90,96:186:99:2331,0,2068 11 18305354 rs17853184 C T 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.056;SOR=0.735 GT:AD:DP:GQ:PL 0/1:41,42:83:99:901,0,986 11 18327684 rs1140047 G T 883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=1.06;SOR=0.613 GT:AD:DP:GQ:PL 0/1:30,36:66:99:912,0,778 11 18422487 rs61736803 C A 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.725;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-0.922;SOR=0.617 GT:AD:DP:GQ:PL 0/1:79,88:167:99:2115,0,1674 11 18424451 rs5030621 C T 1722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=57.45;MQRankSum=-4.581;QD=12.67;ReadPosRankSum=-0.186;SOR=0.526 GT:AD:DP:GQ:PL 0/1:61,75:136:99:1751,0,1536 11 18424487 rs4820 A G 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.564;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=3.512;MLEAC=1;MLEAF=0.5;MQ=57.94;MQRankSum=-4.883;QD=12.65;ReadPosRankSum=-0.99;SOR=0.668 GT:AD:DP:GQ:PL 0/1:82,86:168:99:2153,0,1732 11 18467821 rs2658565 T C 2601.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2630,249,0 11 18472590 . A T 1009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.008;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=2.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.762;SOR=0.758 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1038,0,1041 11 18487274 rs140413894 G T 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.476;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=0.355;SOR=0.837 GT:AD:DP:GQ:PL 0/1:57,38:95:99:881,0,1429 11 18503159 rs2279900 C T 2038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.508;SOR=0.736 GT:AD:DP:GQ:PL 0/1:77,83:160:99:2067,0,1941 11 18505632 rs2279902 G A 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-1.308;SOR=0.802 GT:AD:DP:GQ:PL 0/1:60,70:130:99:1734,0,1620 11 18536215 rs12574333 G T 869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=-0.828;SOR=0.715 GT:AD:DP:GQ:PL 0/1:28,36:64:99:898,0,700 11 18555901 rs56151250 C G 672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=-1.492;SOR=0.877 GT:AD:DP:GQ:PL 0/1:53,29:82:99:701,0,1288 11 18555949 rs55999230 T C 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.902;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.608;SOR=0.459 GT:AD:DP:GQ:PL 0/1:65,48:113:99:1105,0,1516 11 18600322 rs10500835 T G 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.329;SOR=0.834 GT:AD:DP:GQ:PL 0/1:41,35:76:99:819,0,1023 11 18731004 rs72880717 C G 1887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=4.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.243;SOR=0.992 GT:AD:DP:GQ:PL 0/1:121,84:205:99:1916,0,3025 11 18732386 rs56412752 A C 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.843;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.9;ReadPosRankSum=-3.028;SOR=0.842 GT:AD:DP:GQ:PL 0/1:45,75:120:99:2056,0,1061 11 18735396 rs10741752 G T 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.473;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=1.803;SOR=0.599 GT:AD:DP:GQ:PL 0/1:83,76:159:99:1606,0,2208 11 18735947 rs7125943 T C 3757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.041;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=1.357;SOR=0.705 GT:AD:DP:GQ:PL 0/1:105,155:260:99:3786,0,2262 11 18737095 rs4424652 C T 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.917;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=2.455;SOR=0.712 GT:AD:DP:GQ:PL 0/1:81,92:173:99:2286,0,2224 11 18738281 rs10766494 C T 1823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-0.794;SOR=0.725 GT:AD:DP:GQ:PL 0/1:66,75:141:99:1852,0,1542 11 18738329 rs61886891 C T 1538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=-0.435;SOR=0.595 GT:AD:DP:GQ:PL 0/1:85,69:154:99:1567,0,2255 11 18743180 rs10832975 C G 2241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-2.647;SOR=0.714 GT:AD:DP:GQ:PL 0/1:91,92:183:99:2270,0,2403 11 18751041 rs1550870 C T 768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.923;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.554;SOR=1.085 GT:AD:DP:GQ:PL 0/1:43,31:74:99:797,0,1087 11 18764026 rs4757707 G C 3682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=1.31;SOR=0.706 GT:AD:DP:GQ:PL 0/1:131,160:291:99:3711,0,2869 11 18956194 rs2014931 T C 10225.8 PASS AC=2;AF=1;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=29.05;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,352:352:99:10254,1054,0 11 19167850 rs2271001 A G 4453.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4482,436,0 11 19207841 rs13451 C T 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.793;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=0.351;SOR=0.733 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1735,0,2004 11 19251826 rs11821023 G A 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.428;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=-0.536;SOR=0.713 GT:AD:DP:GQ:PL 0/1:54,73:127:99:1808,0,1256 11 19901632 rs11025310 G A 3822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-2.314;SOR=0.666 GT:AD:DP:GQ:PL 0/1:144,164:308:99:3851,0,3311 11 19955500 rs1372989 A G 7376.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.26;ReadPosRankSum=-0.516;SOR=0.255 GT:AD:DP:GQ:PL 1/1:1,235:236:99:7405,672,0 11 19970501 rs11025335 T C 2821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.984;SOR=0.743 GT:AD:DP:GQ:PL 0/1:117,120:237:99:2850,0,2859 11 19970558 rs2585773 T C 6163.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6192,630,0 11 19970579 rs2707084 C T 5876.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5905,588,0 11 20044696 rs2449501 A G 1318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.135;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=3.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-1.011;SOR=1.036 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1347,0,1496 11 20065779 rs3802800 C G 5632.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5661,546,0 11 20099112 rs4757028 A T 2830.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2859,273,0 11 20099541 rs6483642 C T 2261.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.673 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2290,225,0 11 20101704 rs1867114 C T 5015.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5044,524,0 11 20101744 rs1867115 C A 4232.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4261,423,0 11 20104669 rs2028570 G A 4277.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4306,465,0 11 20112417 rs2243624 A C 2194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.16;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.148;SOR=0.943 GT:AD:DP:GQ:PL 0/1:68,95:163:99:2223,0,1456 11 20112492 rs1837971 G A 1589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.126;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=1.124;SOR=0.754 GT:AD:DP:GQ:PL 0/1:104,66:170:99:1618,0,2499 11 20124914 rs2243411 A C 4144.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4173,429,0 11 20429454 rs10741836 T C 2767.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2796,263,0 11 20529886 rs6483700 G A 3115.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3144,315,0 11 20622975 rs1443547 G A 6724.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6753,645,0 11 20623042 rs1443548 T C 7167.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.49;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7196,643,0 11 20623156 rs1443549 C G 5639.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5668,552,0 11 20639400 rs7925597 A G 2763.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2792,270,0 11 20673832 rs72932998 C A 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.195;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-0.483;SOR=0.722 GT:AD:DP:GQ:PL 0/1:61,46:107:99:1058,0,1491 11 20676417 rs1401793 C T 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.575;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.184;SOR=0.579 GT:AD:DP:GQ:PL 0/1:71,50:121:99:1218,0,1797 11 20805286 rs8176785 G A 1472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.921;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.687;SOR=0.784 GT:AD:DP:GQ:PL 0/1:82,64:146:99:1501,0,1860 11 20805335 rs2280363 C T 1870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.612;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.604;SOR=0.859 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1899,0,1846 11 21581805 rs8176789 C T 5714.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5743,602,0 11 22242729 rs4312063 T C 2956.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2985,312,0 11 22271870 rs7481951 A T 1339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=1.144;SOR=0.439 GT:AD:DP:GQ:PL 0/1:52,58:110:99:1368,0,1258 11 22296094 rs374045760 CT C 776.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.758;QD=11.1;ReadPosRankSum=2.059;SOR=0.431 GT:AD:DP:GQ:PL 0/1:29,41:83:99:814,0,638 11 22647366 rs3740615 G A 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=0.141;SOR=0.982 GT:AD:DP:GQ:PL 0/1:61,53:114:99:1507,0,1719 11 22696451 rs922571 A G 1468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.353;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=0.431;SOR=0.797 GT:AD:DP:GQ:PL 0/1:82,60:142:99:1497,0,1968 11 22881002 rs3213706 C T 330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.331;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=10.316;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=1.143;SOR=2.289 GT:AD:DP:GQ:PL 0/1:25,14:39:99:359,0,671 11 24759855 rs1564992 G A 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.472;SOR=0.82 GT:AD:DP:GQ:PL 0/1:40,54:94:99:1220,0,873 11 24784862 rs2716532 A T 402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-1.003;SOR=0.227 GT:AD:DP:GQ:PL 0/1:14,17:31:99:431,0,341 11 25098938 rs7930185 G C 2629.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2658,275,0 11 26568966 rs2663168 A G 3126.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3155,303,0 11 26574782 rs59938249 TG T 1319.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.45;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.14;ReadPosRankSum=-1.069;SOR=0.925 GT:AD:DP:GQ:PL 0/1:12,65:77:86:1357,0,86 11 26586801 rs15783 G A 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=1.221;SOR=1.052 GT:AD:DP:GQ:PL 0/1:63,62:125:99:1566,0,1605 11 26587133 rs293980 T C 2766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.787;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.212;SOR=0.749 GT:AD:DP:GQ:PL 0/1:105,112:217:99:2795,0,2384 11 26621117 rs11604868 A C 1624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.487;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=2.334;SOR=0.647 GT:AD:DP:GQ:PL 0/1:81,77:158:99:1653,0,1938 11 26677947 rs10835051 C T 735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.754;SOR=0.502 GT:AD:DP:GQ:PL 0/1:39,34:73:99:764,0,1042 11 26692631 rs7128384 A G 2386.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.52;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2415,267,0 11 26692733 rs7114378 T C 4839.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.6;SOR=1.138 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,111:111:99:1|1:26692733_T_C:4868,334,0 11 26692742 rs7128823 G A 4623.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.78;SOR=1.029 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,101:101:99:1|1:26692733_T_C:4652,316,0 11 26692811 rs7128731 C G 721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.757;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.78;SOR=1.051 GT:AD:DP:GQ:PL 0/1:33,29:62:99:750,0,843 11 26702664 rs10734383 C T 4331.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4360,425,0 11 26705310 rs3924551 A G 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.966;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.908;SOR=0.69 GT:AD:DP:GQ:PL 0/1:83,63:146:99:1500,0,1928 11 26732923 rs4322349 A G 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.521;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.572;SOR=0.796 GT:AD:DP:GQ:PL 0/1:34,39:73:99:1011,0,766 11 26734209 rs10742156 C T 3095.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3124,332,0 11 26743136 . C A 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0;DP=191;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-2.175;SOR=1.043 GT:AD:DP:GQ:PL 0/1:105,86:191:99:1975,0,2564 11 27077118 rs10767598 C T 5707.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5736,561,0 11 27114788 rs3183973 C T 1851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=1.278;SOR=0.93 GT:AD:DP:GQ:PL 0/1:89,79:168:99:1880,0,2192 11 27137108 rs3214719 A AG 1936.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.283;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.197;QD=18.45;ReadPosRankSum=-0.251;SOR=0.545 GT:AD:DP:GQ:PL 0/1:43,62:105:99:1974,0,1287 11 27362359 rs17244028 T G 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=1.786;SOR=0.583 GT:AD:DP:GQ:PL 0/1:49,61:110:99:1448,0,1043 11 27390089 rs2447997 T C 4771.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4800,442,0 11 27393813 rs2448001 G A 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.152;SOR=0.954 GT:AD:DP:GQ:PL 0/1:34,39:73:99:925,0,856 11 27406844 rs6484295 G A 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.028;SOR=0.947 GT:AD:DP:GQ:PL 0/1:80,86:166:99:1952,0,1929 11 27679662 rs2353512 T C 9902.77 PASS AC=2;AF=1;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,332:332:99:9931,994,0 11 30900263 rs5790842 TA T 680.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.993;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.243;QD=10.64;ReadPosRankSum=1.038;SOR=0.822 GT:AD:DP:GQ:PL 0/1:28,36:85:99:718,0,495 11 31287085 . C A 824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0;SOR=0.746 GT:AD:DP:GQ:PL 0/1:30,37:67:99:853,0,729 11 31327316 rs2616815 C T 2067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-1.253;SOR=0.703 GT:AD:DP:GQ:PL 0/1:96,89:185:99:2096,0,2490 11 31327766 rs2761592 G A 1264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.464;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=1.353;SOR=0.929 GT:AD:DP:GQ:PL 0/1:49,48:97:99:1293,0,1125 11 31653956 rs4922872 C A 2434.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2463,228,0 11 32124978 rs4876 T C 3606.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.93;QD=30.31;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3635,357,0 11 32125961 rs11529889 C T 1389.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.35;QD=27.25;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1418,153,0 11 32456694 rs2234582 C A 4253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.715;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-2.659;SOR=0.819 GT:AD:DP:GQ:PL 0/1:208,166:374:99:4282,0,5379 11 32657266 rs201854 T C 314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=8.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.17;ReadPosRankSum=-0.839;SOR=0.569 GT:AD:DP:GQ:PL 0/1:33,18:51:99:343,0,900 11 32722320 rs11031943 A T 368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=0.381;SOR=0.412 GT:AD:DP:GQ:PL 0/1:22,20:42:99:397,0,504 11 32852172 rs33962176 G A 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.4;SOR=0.661 GT:AD:DP:GQ:PL 0/1:59,58:117:99:1340,0,1527 11 32954344 rs1022586 G A 3224.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3253,332,0 11 32954693 rs200945717 A C 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.773;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.135;SOR=0.636 GT:AD:DP:GQ:PL 0/1:84,69:153:99:1859,0,2095 11 32956244 rs7940077 A G 4668.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4697,429,0 11 32956620 rs7481878 A G 2464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.693;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=1.791;SOR=0.49 GT:AD:DP:GQ:PL 0/1:71,107:178:99:2493,0,1688 11 32975641 rs75682354 G A 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.569;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.739;SOR=0.579 GT:AD:DP:GQ:PL 0/1:66,49:115:99:1301,0,1657 11 33076191 rs2273544 T C 4494.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4523,461,0 11 33090362 rs34745218 C T 7956.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,277:277:99:7985,831,0 11 33360886 rs5790925 AT A 1998.73 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2036,192,0 11 33564123 rs2076623 T C 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.747;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.309;SOR=0.691 GT:AD:DP:GQ:PL 0/1:96,85:181:99:2233,0,2279 11 33581306 rs2281380 G A 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.368;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.445;SOR=0.795 GT:AD:DP:GQ:PL 0/1:42,39:81:99:1011,0,1025 11 33631423 rs2076622 G A 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.547;SOR=0.649 GT:AD:DP:GQ:PL 0/1:79,77:156:99:1682,0,1962 11 33640104 rs768474 A C 1455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.403;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.984;SOR=0.883 GT:AD:DP:GQ:PL 0/1:56,64:120:99:1484,0,1220 11 33667333 rs1033543 A G 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.781;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=0.4;SOR=0.674 GT:AD:DP:GQ:PL 0/1:82,103:185:99:2513,0,1774 11 33667596 rs1033542 T C 1091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.694;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=-0.271;SOR=0.804 GT:AD:DP:GQ:PL 0/1:38,41:79:99:1120,0,947 11 33680371 rs12280103 C T 2514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.977;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.678;SOR=0.816 GT:AD:DP:GQ:PL 0/1:81,112:193:99:2543,0,1977 11 33689652 rs61736869 G A 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.47;SOR=1 GT:AD:DP:GQ:PL 0/1:88,84:172:99:2148,0,2264 11 33722084 rs149234067 G T 561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.94;ReadPosRankSum=0.07;SOR=1.022 GT:AD:DP:GQ:PL 0/1:50,31:81:99:590,0,1201 11 33773161 rs7479064 G C 1477.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=1.298 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1506,144,0 11 33775982 rs2272065 A G 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.05;ReadPosRankSum=-0.693;SOR=0.657 GT:AD:DP:GQ:PL 0/1:21,38:59:99:916,0,484 11 33780163 rs1522086 A T 715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-0.042;SOR=1.086 GT:AD:DP:GQ:PL 0/1:41,34:75:99:744,0,1091 11 33881016 rs3740617 T C 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.883;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-1.913;SOR=0.7 GT:AD:DP:GQ:PL 0/1:90,73:163:99:1768,0,2119 11 33886294 rs2038602 A G 2572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.78;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=4.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=1.137;SOR=0.459 GT:AD:DP:GQ:PL 0/1:100,113:213:99:2601,0,2264 11 34093349 rs10718447 AT A 1838.73 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=27.86;SOR=1.376 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1876,198,0 11 34107785 rs4755360 G A 2376.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2405,231,0 11 34152939 rs2957516 T C 5734.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5763,557,0 11 34154641 rs2957518 C T 4163.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.21;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4192,458,0 11 34460541 rs1049982 T C 2531.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2560,246,0 11 34502345 rs2231828 T C 5139.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5168,504,0 11 34511541 rs2231825 C A 3232.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3261,333,0 11 34678435 rs435537 C G 6092.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.47;SOR=1.29 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,137:137:99:1|1:34678433_C_T:6121,412,0 11 34680400 rs286891 T A 3388.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3417,338,0 11 34909827 rs35393135 GA G 2482.73 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.33;SOR=1.412 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,56:56:99:1|1:34909827_GA_G:2520,169,0 11 34909833 rs61752923 A C 2647.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.41;SOR=1.292 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,61:61:99:1|1:34909827_GA_G:2676,184,0 11 34909926 rs1571133 T G 2393.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2422,234,0 11 34910397 rs1977420 C T 1717.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1746,173,0 11 34910433 rs1977421 A G 1224.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=1.67 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1253,114,0 11 34937813 rs2956114 G A 6897.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6926,716,0 11 34937901 rs2956112 A G 5949.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.19;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5978,522,0 11 34937931 rs2956111 G A 4456.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.51;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4485,397,0 11 34938265 rs2956109 C T 6051.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6080,610,0 11 34991727 rs497582 T C 2752.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2781,274,0 11 34999745 rs10768108 C G 869.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,29:29:87:898,87,0 11 35198108 rs4756196 A G 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.684;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=-0.703;SOR=0.392 GT:AD:DP:GQ:PL 0/1:35,39:74:99:1053,0,929 11 35226155 rs9666607 A G 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.859;SOR=0.552 GT:AD:DP:GQ:PL 0/1:53,66:119:99:1487,0,1342 11 35229673 rs1467558 T C 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=1.304;SOR=0.877 GT:AD:DP:GQ:PL 0/1:33,48:81:99:1206,0,748 11 35308369 rs1042113 T C 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.337;SOR=0.709 GT:AD:DP:GQ:PL 0/1:60,54:114:99:1307,0,1430 11 35323200 rs2273689 A G 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.394;SOR=0.719 GT:AD:DP:GQ:PL 0/1:52,56:108:99:1407,0,1326 11 35327748 rs752949 C T 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.18;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=2.261;SOR=0.488 GT:AD:DP:GQ:PL 0/1:71,53:124:99:1339,0,1778 11 36422701 rs78731804 C T 2703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.202;SOR=0.713 GT:AD:DP:GQ:PL 0/1:125,114:239:99:2732,0,3128 11 36422792 rs330261 G A 6195.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6224,632,0 11 36484208 rs514352 T C 7556.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7585,747,0 11 40137543 rs2953310 T C 2445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.06;ReadPosRankSum=-0.433;SOR=0.613 GT:AD:DP:GQ:PL 0/1:75,99:174:99:2474,0,1748 11 43702530 rs56168061 A G 3241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.461;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.264;SOR=0.526 GT:AD:DP:GQ:PL 0/1:109,122:231:99:3270,0,2427 11 43911365 rs2434478 T C 2666.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=1.216 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2695,276,0 11 43940602 rs1130290 C G 2930.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2959,308,0 11 43964842 rs7077 G C 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.301;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=2.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1.222;SOR=1.052 GT:AD:DP:GQ:PL 0/1:49,40:89:99:969,0,1137 11 44080210 rs2074051 T C 5384.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5413,530,0 11 44089161 rs178514 G A 3978.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.592 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4007,395,0 11 44096238 rs178521 G A 3123.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.03;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3152,359,0 11 44104701 rs79395013 C CCT 8051.73 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=43.29;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,186:186:99:8089,566,0 11 44151577 rs11037882 T A 1775.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=1.316 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1804,177,0 11 44286566 rs3802805 G A 7451.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7480,740,0 11 44297054 rs10769028 T C 6959.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6988,693,0 11 44331309 rs12421995 G A 10476.8 PASS AC=2;AF=1;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,355:355:99:10505,1059,0 11 44331509 rs3824915 C G 8005.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8034,806,0 11 44636839 rs883752 C T 1908.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1937,192,0 11 44640268 rs1139971 A G 3127.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3156,335,0 11 44940828 rs2291334 G A 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=1.867;SOR=1.117 GT:AD:DP:GQ:PL 0/1:61,52:113:99:1169,0,1504 11 44940873 rs11038214 G A 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.895;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=4.86;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.187;SOR=1.027 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1277,0,1062 11 44950703 rs138778813 A G 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.454;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=5.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.099;SOR=0.927 GT:AD:DP:GQ:PL 0/1:74,65:139:99:1490,0,1686 11 45203848 rs1078931 G A 2076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.844;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.84;SOR=0.668 GT:AD:DP:GQ:PL 0/1:82,89:171:99:2105,0,1751 11 45248372 rs11038361 T C 8574.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8603,854,0 11 45249314 rs746555 T C 6072.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6101,588,0 11 45672261 rs3802762 A G 6943.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6972,639,0 11 45868850 rs11394694 C CG 2131.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.601;SOR=0.556 GT:AD:DP:GQ:PL 0/1:102,80:182:99:2169,0,2951 11 45877529 rs2292913 A G 3425.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=1.407 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3454,333,0 11 45935384 rs1132349 A G 5629.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5658,567,0 11 45936035 rs3802758 G A 6053.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.08;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,183:183:99:6082,548,0 11 45937267 rs10742772 C T 4208.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4237,426,0 11 45949534 rs939105 C T 5869.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5898,606,0 11 46342081 rs67946579 TG T 6188.73 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.19;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6226,545,0 11 46342259 rs79068197 A AG 5231.73 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.35;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:5269,445,0 11 46369238 rs76656670 C A 774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.589;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=13.542;MLEAC=1;MLEAF=0.5;MQ=58.06;MQRankSum=-5.18;QD=2.33;ReadPosRankSum=-0.996;SOR=0.554 GT:AD:DP:GQ:PL 0/1:260,73:333:99:803,0,6816 11 46369267 rs114974750 G A 2096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.03;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=21.524;MLEAC=1;MLEAF=0.5;MQ=58.16;MQRankSum=-3.739;QD=6.04;ReadPosRankSum=1.113;SOR=0.779 GT:AD:DP:GQ:PL 0/1:225,122:347:99:2125,0,5815 11 46369302 . C G 121.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0;DP=338;ExcessHet=3.0103;FS=8.768;MLEAC=1;MLEAF=0.5;MQ=58.62;MQRankSum=-1.623;QD=0.37;ReadPosRankSum=-0.82;SOR=1.149 GT:AD:DP:GQ:PL 0/1:291,41:332:99:150,0,7489 11 46401517 rs61882687 A G 307.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.71;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=7.554;MLEAC=1;MLEAF=0.5;MQ=53.71;MQRankSum=-9.172;QD=1.71;ReadPosRankSum=1.463;SOR=0.637 GT:AD:DP:GQ:PL 0/1:147,33:180:99:336,0,3846 11 46569434 rs58268270 CA C 218.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.512;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=8.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.3;ReadPosRankSum=2.224;SOR=0.611 GT:AD:DP:GQ:PL 0/1:74,21:118:99:256,0,1588 11 46702920 rs4268467 T C 3245.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3274,324,0 11 46744925 rs2070852 G C 5173.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5202,498,0 11 46890165 rs3816614 C T 2735.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2764,279,0 11 46893108 rs2306029 T C 3624.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.05;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3653,402,0 11 46898771 rs6485702 T C 4423.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4452,441,0 11 46914583 rs10838631 T C 9215.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.88;SOR=0.751 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,210:210:99:1|1:46914583_T_C:9244,646,0 11 46914598 rs10769215 A G 9072.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.62;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,208:208:99:1|1:46914583_T_C:9101,637,0 11 47187071 rs377653037 GA G 340.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.558;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.66;ReadPosRankSum=-2.702;SOR=0.616 GT:AD:DP:GQ:PL 0/1:96,32:152:99:378,0,2066 11 47188314 rs4752820 T C 7749.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7778,788,0 11 47238522 rs326212 T C 5777.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5806,612,0 11 47298360 rs326214 G A 6364.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6393,676,0 11 47303275 rs326217 T C 1347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.107;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.771;SOR=0.649 GT:AD:DP:GQ:PL 0/1:65,56:121:99:1376,0,1561 11 47306630 rs35233100 C T 3102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=1.679;SOR=0.52 GT:AD:DP:GQ:PL 0/1:116,127:243:99:3131,0,2806 11 47331116 rs1017594 T C 4066.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4095,390,0 11 47371484 rs11570050 AG A 6988.73 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=34.09;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,205:205:99:7026,617,0 11 47431728 rs2010519 A G 7821.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7850,756,0 11 47431966 rs755555 C T 1516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=2.314;SOR=0.875 GT:AD:DP:GQ:PL 0/1:86,69:155:99:1545,0,2328 11 47434986 rs2293576 G A 2521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=0.543;SOR=0.566 GT:AD:DP:GQ:PL 0/1:110,106:216:99:2550,0,2739 11 47440758 rs2293579 G A 1608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.993;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=2.252;SOR=0.65 GT:AD:DP:GQ:PL 0/1:86,69:155:99:1637,0,2054 11 47460306 rs7126210 A G 7462.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7491,726,0 11 47463483 rs34729771 AG A 4863.73 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=37.13;SOR=1.574 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4901,395,0 11 47469439 rs7111873 A G 9671.77 PASS AC=2;AF=1;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,338:338:99:9700,1013,0 11 47609867 rs4486587 G A 5691.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5720,560,0 11 47640429 rs1064608 G C 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-1.989;SOR=0.938 GT:AD:DP:GQ:PL 0/1:85,64:149:99:1447,0,1987 11 47701528 rs12286721 C A 473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.2;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.259;QD=7.9;ReadPosRankSum=-2.759;SOR=1.051 GT:AD:DP:GQ:PL 0/1:36,24:60:99:502,0,903 11 47712213 rs7941404 C T 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.316;SOR=0.833 GT:AD:DP:GQ:PL 0/1:100,61:161:99:1411,0,2650 11 47786926 rs148666719 A AAAAAG 418.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.383;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0;QD=11.63;ReadPosRankSum=2.929;SOR=0.576 GT:AD:DP:GQ:PL 0/1:25,11:38:99:456,0,1294 11 47788663 rs67450550 CGGTGGT C 5558.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.49;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=2.567;QD=16.11;ReadPosRankSum=0.644;SOR=0.691 GT:AD:DP:GQ:PL 0/1:195,150:345:99:5596,0,10115 11 47826090 rs11039402 A C 1000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=2.388;SOR=0.758 GT:AD:DP:GQ:PL 0/1:31,42:73:99:1029,0,780 11 47834592 rs7110289 G A 2047.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2076,201,0 11 47857253 rs3816605 T C 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-1.344;SOR=0.693 GT:AD:DP:GQ:PL 0/1:74,64:138:99:1486,0,1728 11 48145247 rs2270992 T C 4456.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4485,444,0 11 48166267 rs4752904 G C 4818.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.305 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4847,477,0 11 48188872 rs12809012 G A 1314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.317;SOR=0.731 GT:AD:DP:GQ:PL 0/1:71,60:131:99:1343,0,1719 11 48238421 rs10769329 T G 3882.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3911,422,0 11 48239071 rs12292056 C A 1942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-1.966;SOR=0.762 GT:AD:DP:GQ:PL 0/1:68,79:147:99:1971,0,1741 11 48285842 rs1503193 A G 5598.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=30.43;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5627,552,0 11 48285856 rs10838850 C T 1854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.927;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=6.736;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.108;QD=11.24;ReadPosRankSum=-0.645;SOR=0.835 GT:AD:DP:GQ:PL 0/1:90,75:165:99:1883,0,2249 11 48285981 rs76884411 CCTT C 2599.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.872;QD=17.33;ReadPosRankSum=-0.188;SOR=0.811 GT:AD:DP:GQ:PL 0/1:80,70:150:99:2637,0,3786 11 48286231 rs10838851 T A 1045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.066;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.546;SOR=0.897 GT:AD:DP:GQ:PL 0/1:66,46:112:99:1074,0,1676 11 48286256 rs10838852 C T 1071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-1.307;SOR=0.868 GT:AD:DP:GQ:PL 0/1:51,44:95:99:1100,0,1360 11 48328644 rs753095 C T 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.763;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-0.763;SOR=0.623 GT:AD:DP:GQ:PL 0/1:57,81:138:99:1849,0,1136 11 48347140 rs10838874 T C 1779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.001;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-2.1;QD=11.12;ReadPosRankSum=-0.748;SOR=0.972 GT:AD:DP:GQ:PL 0/1:95,65:160:99:1808,0,2401 11 48510654 rs7103557 A C 6044.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.73;QD=29.92;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6073,606,0 11 48510777 rs7103992 G A 4396.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=32.33;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4425,407,0 11 49055751 rs2727042 T C 9409.77 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.82;QD=29.41;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,320:320:99:9438,957,0 11 49056627 rs60632912 C CT 831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=59.62;MQRankSum=0.219;QD=8.94;ReadPosRankSum=-1.555;SOR=0.782 GT:AD:DP:GQ:PL 0/1:46,47:116:99:860,0,815 11 49059362 rs2696914 C A 8661.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.24;QD=29.07;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,298:298:99:8690,892,0 11 49075605 rs2851535 G A 7081.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7110,701,0 11 49076963 rs34650085 C CAA 4038.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=5.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=36.06;ReadPosRankSum=0.933;SOR=1.112 GT:AD:DP:GQ:PL 1/1:8,104:147:99:3975,139,0 11 49080616 rs60452246 T C 4348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.39;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.555;QD=11.27;ReadPosRankSum=-1.035;SOR=0.808 GT:AD:DP:GQ:PL 0/1:202,184:386:99:4377,0,4885 11 49080677 rs34947092 T TA 2517.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.006;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0;QD=16.04;ReadPosRankSum=0.407;SOR=0.586 GT:AD:DP:GQ:PL 0/1:39,118:203:99:2555,0,556 11 49176057 rs2988340 C T 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.869;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.88;MQRankSum=-4.868;QD=6.8;ReadPosRankSum=2.371;SOR=0.728 GT:AD:DP:GQ:PL 0/1:82,37:119:99:838,0,2045 11 49208267 rs75940285 G A 363.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.409;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.5;MQ=57.01;MQRankSum=-12.992;QD=1.65;ReadPosRankSum=0.903;SOR=0.807 GT:AD:DP:GQ:PL 0/1:179,41:222:99:392,0,4655 11 49208319 rs79155991 G A 562.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.806;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.1;MLEAC=1;MLEAF=0.5;MQ=56.49;MQRankSum=-14.146;QD=2.75;ReadPosRankSum=-0.323;SOR=0.53 GT:AD:DP:GQ:PL 0/1:159,46:205:99:591,0,4246 11 49208333 rs74858499 G A 563.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.5;MQRankSum=-13.66;QD=2.95;ReadPosRankSum=1.034;SOR=0.718 GT:AD:DP:GQ:PL 0/1:150,41:191:99:592,0,3895 11 49974371 rs28662375 G A 3583.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.44;QD=31.71;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3612,338,0 11 50003191 rs4598671 C A 1583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.606;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=3.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-0.961;SOR=1.005 GT:AD:DP:GQ:PL 0/1:57,62:119:99:1612,0,1360 11 51516000 rs11246607 C T 3623.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.11;QD=29.7;SOR=1.207 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3652,323,0 11 51516036 rs11246608 G A 2741.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.37;QD=29.8;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2770,275,0 11 51516144 rs11246609 A G 1263.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.42;QD=34.16;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1292,111,0 11 55033084 rs17849542 T G 2046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.55;MQRankSum=1.541;QD=9.52;ReadPosRankSum=-0.542;SOR=0.665 GT:AD:DP:GQ:PL 0/1:124,91:215:99:2075,0,2928 11 55111238 rs11229158 C A 3537.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3566,351,0 11 55111584 rs10896659 A T 2663.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2692,258,0 11 55135435 rs1425193 C T 897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.262;SOR=0.869 GT:AD:DP:GQ:PL 0/1:40,35:75:99:926,0,1026 11 55322211 rs9804659 A G 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.362;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-1.119;SOR=0.597 GT:AD:DP:GQ:PL 0/1:75,73:148:99:2059,0,1819 11 55322539 rs12790125 G A 1651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=-0.15;SOR=0.66 GT:AD:DP:GQ:PL 0/1:97,70:167:99:1680,0,2421 11 55339652 rs1459101 C T 696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.53;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=3.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.051;SOR=0.301 GT:AD:DP:GQ:PL 0/1:26,29:55:99:725,0,697 11 55339676 rs12800642 G T 672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-1.569;SOR=0.77 GT:AD:DP:GQ:PL 0/1:28,27:55:99:701,0,717 11 55339702 rs34100491 C T 905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.497;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.654;SOR=0.638 GT:AD:DP:GQ:PL 0/1:37,38:75:99:934,0,877 11 55339798 rs557667 C T 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=6.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.471;SOR=0.945 GT:AD:DP:GQ:PL 0/1:40,55:95:99:1345,0,972 11 55339829 rs557590 A G 3316.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3345,341,0 11 55340379 rs559449 T C 3953.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3982,390,0 11 55371807 rs11230346 A T 505.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.739 GT:AD:DP:GQ:PL 1/1:0,17:17:51:534,51,0 11 55433040 rs11230600 T C 2715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=3.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-0.417;SOR=0.933 GT:AD:DP:GQ:PL 0/1:89,116:205:99:2744,0,2128 11 55541019 rs147031394 G A 729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=0.851;SOR=1.027 GT:AD:DP:GQ:PL 0/1:51,33:84:99:758,0,1282 11 55541098 rs297118 G A 2277.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2306,222,0 11 55563776 rs297054 T G 4865.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.66;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4894,447,0 11 55587117 rs297082 T A 1946.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1975,198,0 11 55587511 rs297081 A G 5564.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.918;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.08;ReadPosRankSum=0.559;SOR=0.704 GT:AD:DP:GQ:PL 1/1:2,183:185:99:5593,505,0 11 55587914 rs55832853 A G 3423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.267;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=1.851;QD=12.87;ReadPosRankSum=-1.52;SOR=0.702 GT:AD:DP:GQ:PL 0/1:125,141:266:99:3452,0,2858 11 55606208 rs12361036 G A 743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.747;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=0.613;SOR=0.901 GT:AD:DP:GQ:PL 0/1:48,31:79:99:772,0,1094 11 55606302 rs6591699 G T 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.404;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.58;ReadPosRankSum=-0.15;SOR=0.66 GT:AD:DP:GQ:PL 0/1:44,69:113:99:1789,0,1171 11 55606472 rs62001008 T C 1504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.464;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-1.661;SOR=0.791 GT:AD:DP:GQ:PL 0/1:92,63:155:99:1533,0,2271 11 55606818 rs11231253 C T 1663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.667;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.275;SOR=0.844 GT:AD:DP:GQ:PL 0/1:63,68:131:99:1692,0,1784 11 55652963 rs2063276 A G 2596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.509;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=57.53;MQRankSum=0.067;QD=12.08;ReadPosRankSum=-0.491;SOR=0.795 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,105:215:99:0|1:55652963_A_G:2625,0,2438 11 55652971 rs2063277 C A 7817.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.61;QD=35.22;SOR=0.826 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,222:222:99:1|1:55652963_A_G:7846,669,0 11 55653164 rs10897403 G A 2908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-1.104;SOR=0.514 GT:AD:DP:GQ:PL 0/1:96,111:207:99:2937,0,2509 11 55656437 . A AT 140.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=-3.563;QD=2.01;ReadPosRankSum=-0.506;SOR=0.765 GT:AD:DP:GQ:PL 0/1:54,16:81:99:178,0,1122 11 55656483 rs7483200 T A 2189.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.27;QD=27.72;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2218,236,0 11 55657399 rs7120357 C T 3195.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.56;QD=42.61;SOR=1.488 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:55657394_A_G:3224,226,0 11 55681336 rs11231529 G A 1147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=-1.711;SOR=0.616 GT:AD:DP:GQ:PL 0/1:73,52:125:99:1176,0,1893 11 55681494 rs2457239 G A 3584.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3613,347,0 11 55761221 rs2449134 C T 2683.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=29.17;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2712,274,0 11 55761738 rs2128152 T G 4329.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.89;QD=29.86;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4358,434,0 11 55762060 rs71490418 T C 1007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.281;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.582;SOR=0.581 GT:AD:DP:GQ:PL 0/1:56,45:101:99:1036,0,1207 11 55798152 rs1482011 G A 3228.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3257,312,0 11 55860780 rs1842700 G A 1747.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=1.487 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1776,165,0 11 55872876 rs2512961 C T 6981.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.48;QD=28.73;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7010,725,0 11 55873024 rs2449148 A G 5258.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.46;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5287,485,0 11 55873368 rs1842696 G A 4303.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4332,427,0 11 55873475 rs2170447 C T 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=0.945;SOR=0.67 GT:AD:DP:GQ:PL 0/1:52,40:92:99:1026,0,1415 11 55890257 rs1842691 C T 7385.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.12;QD=32.11;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7414,691,0 11 56000403 rs10791893 C G 3201.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3230,306,0 11 56000600 rs3919907 G T 925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.986;SOR=0.593 GT:AD:DP:GQ:PL 0/1:37,39:76:99:954,0,962 11 56043604 rs12360890 A G 3362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.5;MQ=57.81;MQRankSum=-8.697;QD=11.56;ReadPosRankSum=0.314;SOR=0.58 GT:AD:DP:GQ:PL 0/1:147,144:291:99:3391,0,3416 11 56043702 rs7125697 G C 2402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.5;MQ=58.33;MQRankSum=-5.648;QD=12.45;ReadPosRankSum=0.246;SOR=0.484 GT:AD:DP:GQ:PL 0/1:92,101:193:99:2431,0,2345 11 56058197 rs1842674 G A 1918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-2.077;SOR=0.696 GT:AD:DP:GQ:PL 0/1:84,86:170:99:1947,0,2169 11 56086147 rs960193 T G 952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=0.062;SOR=0.841 GT:AD:DP:GQ:PL 0/1:58,47:105:99:981,0,1413 11 56113516 rs1905055 T C 551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.939;SOR=0.843 GT:AD:DP:GQ:PL 0/1:26,23:49:99:580,0,703 11 56113575 rs10896271 A G 928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=1.124;SOR=1.061 GT:AD:DP:GQ:PL 0/1:44,43:87:99:957,0,1052 11 56113593 rs10896272 C A 884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.221;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=0.887;SOR=1.04 GT:AD:DP:GQ:PL 0/1:47,41:88:99:913,0,1078 11 56127746 rs7942390 A G 3737.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.374 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3766,369,0 11 56128081 rs10896290 A G 3284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.205;QD=15.07;ReadPosRankSum=1.73;SOR=0.746 GT:AD:DP:GQ:PL 0/1:92,126:218:99:3313,0,2171 11 56128524 rs7928704 C T 2356.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2385,237,0 11 56143156 rs11228165 C T 3989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=0.534;SOR=0.523 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,106:259:99:0|1:56143156_C_T:4018,0,7709 11 56143158 rs11228166 A G 3989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.704;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=3.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.35;ReadPosRankSum=0.493;SOR=0.507 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,107:260:99:0|1:56143156_C_T:4018,0,7709 11 56143434 rs10791961 C G 3352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.457;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.122;SOR=0.63 GT:AD:DP:GQ:PL 0/1:136,130:266:99:3381,0,3387 11 56143528 rs10791964 A G 700.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.029;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=79.768;MLEAC=1;MLEAF=0.5;MQ=59.2;MQRankSum=-12.828;QD=2.16;ReadPosRankSum=-4.774;SOR=3.844 GT:AD:DP:GQ:PGT:PID:PL 0/1:287,37:324:99:0|1:56143528_A_G:729,0,14410 11 56143534 rs78854227 A G 895.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.443;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=87.882;MLEAC=1;MLEAF=0.5;MQ=59.05;MQRankSum=-13.296;QD=2.78;ReadPosRankSum=-4.758;SOR=4.065 GT:AD:DP:GQ:PGT:PID:PL 0/1:281,41:322:99:0|1:56143528_A_G:924,0,14839 11 56143537 rs74691432 A T 1042.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.546;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=97.537;MLEAC=1;MLEAF=0.5;MQ=58.99;MQRankSum=-13.628;QD=3.23;ReadPosRankSum=-4.733;SOR=4.216 GT:AD:DP:GQ:PGT:PID:PL 0/1:279,44:323:99:0|1:56143528_A_G:1071,0,14628 11 56143539 rs75226392 T C 1057.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.626;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=92.68;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=-13.877;QD=3.24;ReadPosRankSum=-4.478;SOR=3.902 GT:AD:DP:GQ:PGT:PID:PL 0/1:280,46:326:99:0|1:56143528_A_G:1086,0,14418 11 56143543 rs76579014 T C 1167.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.902;ClippingRankSum=0;DB;DP=371;ExcessHet=3.0103;FS=98.408;MLEAC=1;MLEAF=0.5;MQ=58.92;MQRankSum=-13.789;QD=3.58;ReadPosRankSum=-3.959;SOR=3.994 GT:AD:DP:GQ:PGT:PID:PL 0/1:278,48:326:99:0|1:56143528_A_G:1196,0,14443 11 56143544 rs78532946 T C 1170.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.779;ClippingRankSum=0;DB;DP=376;ExcessHet=3.0103;FS=101.057;MLEAC=1;MLEAF=0.5;MQ=58.93;MQRankSum=-13.691;QD=3.56;ReadPosRankSum=-3.83;SOR=4.039 GT:AD:DP:GQ:PGT:PID:PL 0/1:280,49:329:99:0|1:56143528_A_G:1199,0,14401 11 56143556 rs80334520 T A 1690.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.326;ClippingRankSum=0;DB;DP=394;ExcessHet=3.0103;FS=137.402;MLEAC=1;MLEAF=0.5;MQ=58.94;MQRankSum=-11.879;QD=5.02;ReadPosRankSum=-2.971;SOR=4.508 GT:AD:DP:GQ:PGT:PID:PL 0/1:276,61:337:99:0|1:56143556_T_A:1719,0,14228 11 56143559 rs74603674 C T 1813.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.589;ClippingRankSum=0;DB;DP=392;ExcessHet=3.0103;FS=141.615;MLEAC=1;MLEAF=0.5;MQ=58.89;MQRankSum=-11.452;QD=5.4;ReadPosRankSum=-2.366;SOR=4.542 GT:AD:DP:GQ:PGT:PID:PL 0/1:274,62:336:99:0|1:56143556_T_A:1842,0,14328 11 56143561 rs75242425 A G 1864.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=10.77;ClippingRankSum=0;DB;DP=397;ExcessHet=3.0103;FS=140.199;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=-11.283;QD=5.5;ReadPosRankSum=-1.607;SOR=4.269 GT:AD:DP:GQ:PGT:PID:PL 0/1:275,64:339:99:0|1:56143556_T_A:1893,0,14259 11 56143562 rs80111030 A G 1899.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=10.322;ClippingRankSum=0;DB;DP=397;ExcessHet=3.0103;FS=143.842;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=-11.172;QD=5.6;ReadPosRankSum=-1.609;SOR=4.302 GT:AD:DP:GQ:PGT:PID:PL 0/1:274,65:339:99:0|1:56143556_T_A:1928,0,14340 11 56143564 rs77640279 G T 2346.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.903;ClippingRankSum=0;DB;DP=402;ExcessHet=3.0103;FS=148.783;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=-10.871;QD=6.88;ReadPosRankSum=-0.961;SOR=4.335 GT:AD:DP:GQ:PGT:PID:PL 0/1:275,66:341:99:0|1:56143556_T_A:2375,0,14163 11 56143570 rs11228169 A G 2548.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.884;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=104.546;MLEAC=1;MLEAF=0.5;MQ=58.77;MQRankSum=-8.993;QD=7.16;ReadPosRankSum=-3.476;SOR=2.44 GT:AD:DP:GQ:PGT:PID:PL 0/1:267,89:356:99:0|1:56143556_T_A:2577,0,13752 11 56143592 rs17150411 C T 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0;DB;DP=426;ExcessHet=3.0103;FS=33.987;MLEAC=1;MLEAF=0.5;MQ=58.66;MQRankSum=3.364;QD=6.23;ReadPosRankSum=1.049;SOR=1.2 GT:AD:DP:GQ:PL 0/1:245,123:368:99:2322,0,6231 11 56143690 rs4990123 C A 399.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.59;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=49.715;MLEAC=1;MLEAF=0.5;MQ=59.59;MQRankSum=-9.603;QD=1.14;ReadPosRankSum=-5.667;SOR=2.944 GT:AD:DP:GQ:PGT:PID:PL 0/1:315,35:350:99:0|1:56143690_C_A:428,0,18088 11 56143696 rs4990122 C T 315.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.405;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=49.896;MLEAC=1;MLEAF=0.5;MQ=59.61;MQRankSum=-11.072;QD=0.92;ReadPosRankSum=-6.356;SOR=3.32 GT:AD:DP:GQ:PGT:PID:PL 0/1:314,29:343:99:0|1:56143690_C_A:344,0,18113 11 56143699 rs4990121 T G 225.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.388;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=41.739;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=-11.749;QD=0.66;ReadPosRankSum=-6.525;SOR=3.082 GT:AD:DP:GQ:PGT:PID:PL 0/1:317,26:343:99:0|1:56143690_C_A:254,0,18226 11 56143966 rs12291978 C T 2725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.093;SOR=0.856 GT:AD:DP:GQ:PL 0/1:133,110:243:99:2754,0,3446 11 56143977 rs12272403 A G 2534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.719;SOR=0.645 GT:AD:DP:GQ:PL 0/1:113,104:217:99:2563,0,2860 11 56184888 rs998544 G A 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.782;SOR=0.978 GT:AD:DP:GQ:PL 0/1:61,56:117:99:1411,0,1685 11 56185159 rs7930678 A G 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.082;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-0.372;SOR=0.759 GT:AD:DP:GQ:PL 0/1:68,64:132:99:1628,0,1811 11 56185327 rs7933772 T C 1969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.168;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=0.607;SOR=0.64 GT:AD:DP:GQ:PL 0/1:72,73:145:99:1998,0,1784 11 56185345 rs6591324 A G 4410.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.43;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4439,408,0 11 56185689 rs7931261 A G 741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.57;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.33;ReadPosRankSum=0.627;SOR=0.781 GT:AD:DP:GQ:PL 0/1:58,31:89:99:770,0,1451 11 56237410 rs617315 A G 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.5;MQ=54.12;MQRankSum=-8.137;QD=13.04;ReadPosRankSum=0.552;SOR=1.024 GT:AD:DP:GQ:PL 0/1:48,54:102:99:1358,0,1245 11 56237722 rs605734 T A 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.191;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-0.981;QD=11.17;ReadPosRankSum=2.453;SOR=1.022 GT:AD:DP:GQ:PL 0/1:54,54:108:99:1235,0,1224 11 56310222 rs628524 C T 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.704;SOR=0.727 GT:AD:DP:GQ:PL 0/1:74,75:149:99:1884,0,2052 11 56344260 rs10896488 A G 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=5.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-0.03;SOR=0.338 GT:AD:DP:GQ:PL 0/1:60,73:133:99:1864,0,1630 11 56344993 rs10792043 C A 2270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.97;MQRankSum=1.123;QD=11.95;ReadPosRankSum=-0.304;SOR=0.735 GT:AD:DP:GQ:PL 0/1:95,95:190:99:2299,0,2373 11 56380546 rs72003051 CCAGA C 2745.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.74;QD=18.94;ReadPosRankSum=0.202;SOR=0.898 GT:AD:DP:GQ:PL 0/1:72,73:145:99:2783,0,3979 11 56409603 rs11606499 C T 1276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.896;SOR=0.75 GT:AD:DP:GQ:PL 0/1:75,58:133:99:1305,0,1860 11 56431216 rs11228710 C T 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.153;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.172;SOR=1.059 GT:AD:DP:GQ:PL 0/1:57,61:118:99:1451,0,1174 11 56468020 rs532637 T C 4430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.5;MQ=53.68;MQRankSum=4.404;QD=17.65;ReadPosRankSum=1.958;SOR=0.847 GT:AD:DP:GQ:PL 0/1:79,172:251:99:4459,0,2184 11 56468044 rs3975155 T G 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=8.384;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.5;MQ=53.31;MQRankSum=-9.629;QD=6.31;ReadPosRankSum=1.056;SOR=0.916 GT:AD:DP:GQ:PGT:PID:PL 0/1:171,46:217:99:0|1:56468044_T_G:1398,0,7031 11 56468047 rs2865519 A G 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.564;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=53.21;MQRankSum=-10.211;QD=6.37;ReadPosRankSum=0.885;SOR=0.787 GT:AD:DP:GQ:PGT:PID:PL 0/1:170,45:215:99:0|1:56468044_T_G:1398,0,7031 11 56468048 rs2865520 C T 7389.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.21;QD=34.05;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,217:217:99:7418,652,0 11 56468155 rs11228732 T G 4423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.529;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.5;MQ=58.94;MQRankSum=0.604;QD=13.74;ReadPosRankSum=-0.771;SOR=0.567 GT:AD:DP:GQ:PL 0/1:142,180:322:99:4452,0,3174 11 56468259 rs503776 C T 11146.8 PASS AC=2;AF=1;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.1;QD=30.88;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,361:361:99:11175,1083,0 11 56468638 rs7121276 G T 3219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.33;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=-0.611;QD=12.48;ReadPosRankSum=0.534;SOR=0.583 GT:AD:DP:GQ:PL 0/1:131,127:258:99:3248,0,3416 11 56510623 rs513873 A G 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.559;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.128;SOR=0.725 GT:AD:DP:GQ:PL 0/1:56,58:114:99:1525,0,1231 11 56510672 rs577576 T C 4861.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.98;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4890,390,0 11 56510694 rs1397053 T C 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.06;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=1.641;SOR=0.693 GT:AD:DP:GQ:PL 0/1:72,72:144:99:1909,0,1699 11 57004344 rs948847 G T 3351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=3.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=1.631;SOR=0.912 GT:AD:DP:GQ:PL 0/1:145,141:286:99:3380,0,3584 11 57077464 rs10896602 T C 2321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-1.035;SOR=0.592 GT:AD:DP:GQ:PL 0/1:134,98:232:99:2350,0,3604 11 57081197 rs4939134 G C 3361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.16;ReadPosRankSum=-0.613;SOR=0.644 GT:AD:DP:GQ:PL 0/1:85,123:208:99:3390,0,2355 11 57117385 rs2276042 C T 3616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=1.192;SOR=0.721 GT:AD:DP:GQ:PL 0/1:149,149:298:99:3645,0,3700 11 57137371 rs2276039 G A 1240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.305;SOR=0.509 GT:AD:DP:GQ:PL 0/1:60,55:115:99:1269,0,1490 11 57137424 rs2276038 C T 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-0.49;SOR=0.751 GT:AD:DP:GQ:PL 0/1:89,75:164:99:1638,0,2096 11 57147016 rs540687 A G 6219.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6248,618,0 11 57148175 rs669661 A G 3878.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3907,410,0 11 57155001 rs536455 G A 2898.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2927,302,0 11 57155288 rs630396 T C 4683.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4712,503,0 11 57157405 rs490358 A G 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=7.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=1.105;SOR=0.537 GT:AD:DP:GQ:PL 0/1:67,53:120:99:1242,0,1602 11 57176628 rs2241899 C T 783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=0.102;SOR=0.648 GT:AD:DP:GQ:PL 0/1:71,39:110:99:812,0,1777 11 57235409 rs61745214 G T 3982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.215;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.26;ReadPosRankSum=0.835;SOR=0.712 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,108:261:99:0|1:57235409_G_T:4011,0,7744 11 57235410 rs61745215 C T 3982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.118;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.44;ReadPosRankSum=1.218;SOR=0.72 GT:AD:DP:GQ:PGT:PID:PL 0/1:151,107:258:99:0|1:57235409_G_T:4011,0,7744 11 57313469 rs12223229 C G 3195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.262;SOR=0.747 GT:AD:DP:GQ:PL 0/1:118,138:256:99:3224,0,2687 11 57379170 rs2511988 A G 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-1.45;SOR=0.604 GT:AD:DP:GQ:PL 0/1:63,44:107:99:1053,0,1625 11 57463500 rs1783978 T C 3500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.889;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-0.044;SOR=0.66 GT:AD:DP:GQ:PL 0/1:165,150:315:99:3529,0,3913 11 57509429 rs635663 A G 6897.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6926,627,0 11 57563991 rs10896644 C T 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=1.106;SOR=0.6 GT:AD:DP:GQ:PL 0/1:74,70:144:99:1786,0,1838 11 57571232 rs11229137 C T 4658.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4687,484,0 11 57798723 rs921135 A G 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.651;SOR=0.697 GT:AD:DP:GQ:PL 0/1:61,57:118:99:1483,0,1589 11 57798942 rs2513726 A G 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.289;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.33;ReadPosRankSum=0.792;SOR=0.734 GT:AD:DP:GQ:PL 0/1:54,70:124:99:1929,0,1256 11 57799108 rs34846253 AC A 1977.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.111;QD=14.98;ReadPosRankSum=2.736;SOR=0.785 GT:AD:DP:GQ:PL 0/1:72,60:132:99:2015,0,2502 11 57799371 rs1374570 G C 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.74;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.892;SOR=0.627 GT:AD:DP:GQ:PL 0/1:37,51:88:99:1188,0,851 11 57957960 rs61902821 T C 498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.687;SOR=0.498 GT:AD:DP:GQ:PL 0/1:18,21:39:99:527,0,446 11 57958497 rs34337292 T C 2490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.165;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.48;ReadPosRankSum=-0.325;SOR=0.644 GT:AD:DP:GQ:PL 0/1:78,94:172:99:2519,0,1740 11 57982229 rs1966836 A G 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.805;SOR=0.504 GT:AD:DP:GQ:PL 0/1:46,45:91:99:1000,0,1113 11 57983162 rs7103026 A G 2632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.641;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.5;MQ=56.11;MQRankSum=-2.317;QD=11.7;ReadPosRankSum=0.619;SOR=0.931 GT:AD:DP:GQ:PL 0/1:125,100:225:99:2661,0,2969 11 57995777 rs11229301 G A 3107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=3.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.215;SOR=0.938 GT:AD:DP:GQ:PL 0/1:118,124:242:99:3136,0,2984 11 57996312 rs4245219 C G 5424.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5453,534,0 11 58125620 rs4127353 T C 1964.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.3;SOR=1.421 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1993,177,0 11 58126305 rs4939208 A T 4277.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4306,417,0 11 58170794 rs17152661 G A 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-1.171;SOR=0.629 GT:AD:DP:GQ:PL 0/1:45,43:88:99:1141,0,1120 11 58190136 rs4298923 A G 3556.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.33;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3585,329,0 11 58207035 rs201567144 AT A 1613.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=2.362;QD=11.53;ReadPosRankSum=-0.165;SOR=0.681 GT:AD:DP:GQ:PL 0/1:66,74:140:99:1651,0,2186 11 58207204 rs4938895 A G 4429.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4458,420,0 11 58378424 rs8373 A G 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.518;SOR=0.49 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1197,0,1211 11 58381686 rs1938596 A G 1369.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=1.203 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:58381663_AT_A:1398,137,0 11 58391501 rs1800169 G A 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.405;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.568;SOR=0.486 GT:AD:DP:GQ:PL 0/1:99,80:179:99:1881,0,2431 11 58478039 rs675757 T C 1421.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.85;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1450,126,0 11 58478084 rs675815 T C 1881.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1910,186,0 11 59132798 rs7941190 G C 1176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=2.431;SOR=0.637 GT:AD:DP:GQ:PL 0/1:44,47:91:99:1205,0,1194 11 59132882 rs10896964 A G 729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.814;SOR=0.593 GT:AD:DP:GQ:PL 0/1:30,33:63:99:758,0,718 11 59189912 rs1453547 G A 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=3.318;SOR=0.697 GT:AD:DP:GQ:PL 0/1:64,91:155:99:2286,0,1459 11 59210761 rs11605572 C G 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.65;ReadPosRankSum=-0.856;SOR=0.671 GT:AD:DP:GQ:PL 0/1:61,78:139:99:2065,0,1582 11 59211188 rs6591536 G A 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=1.643;SOR=0.616 GT:AD:DP:GQ:PL 0/1:120,100:220:99:2153,0,2964 11 59211265 rs7941591 T C 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.038;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-2.437;SOR=0.784 GT:AD:DP:GQ:PL 0/1:90,90:180:99:2048,0,2227 11 59211421 rs17591107 C T 2537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.207;SOR=0.826 GT:AD:DP:GQ:PL 0/1:82,111:193:99:2566,0,1845 11 59224608 rs1453544 A G 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.901;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.46;ReadPosRankSum=0.524;SOR=0.593 GT:AD:DP:GQ:PL 0/1:53,78:131:99:2054,0,1120 11 59224720 rs1453543 A G 5276.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5305,523,0 11 59224885 rs1453542 G C 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.25;SOR=0.893 GT:AD:DP:GQ:PL 0/1:76,63:139:99:1486,0,2092 11 59225221 rs1453541 T C 1309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.708;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=0.07;SOR=0.652 GT:AD:DP:GQ:PL 0/1:75,52:127:99:1338,0,2001 11 59282861 rs17501584 A G 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.175;SOR=0.603 GT:AD:DP:GQ:PL 0/1:83,83:166:99:1881,0,1923 11 59423525 . TA T 269.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.731;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.49;ReadPosRankSum=-0.339;SOR=0.76 GT:AD:DP:GQ:PL 0/1:18,18:47:99:307,0,221 11 59480951 rs499033 T C 4761.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.131;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.14;ReadPosRankSum=-0.984;SOR=0.857 GT:AD:DP:GQ:PL 1/1:2,156:158:99:4790,424,0 11 59807978 rs79964989 G A 565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.67;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.44;ReadPosRankSum=0.058;SOR=0.632 GT:AD:DP:GQ:PL 0/1:37,30:67:99:594,0,825 11 59831716 rs1151065 C A 426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.85;ReadPosRankSum=-0.699;SOR=0.44 GT:AD:DP:GQ:PL 0/1:49,24:73:99:455,0,1320 11 59837097 rs528823 C T 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.062;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.646;SOR=0.736 GT:AD:DP:GQ:PL 0/1:48,55:103:99:1219,0,1026 11 59837721 rs3038645 T TTATGAAAA 1065.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.209;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.086;QD=18.06;ReadPosRankSum=0.435;SOR=1.096 GT:AD:DP:GQ:PL 0/1:31,28:59:99:1103,0,2964 11 59940599 rs7232 T A 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.808;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=0.679;SOR=0.876 GT:AD:DP:GQ:PL 0/1:52,47:99:99:1153,0,1197 11 59945745 rs12453 T C 922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.128;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=-0.467;SOR=0.602 GT:AD:DP:GQ:PL 0/1:61,46:107:99:951,0,1340 11 60059810 rs10750931 A G 3835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.236;SOR=0.705 GT:AD:DP:GQ:PL 0/1:169,161:330:99:3864,0,4010 11 60070176 rs6591561 A G 3643.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3672,363,0 11 60073597 rs4644658 C T 3460.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3489,350,0 11 60152563 rs950803 T A 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.785;SOR=0.585 GT:AD:DP:GQ:PL 0/1:60,56:116:99:1373,0,1511 11 60152584 rs950802 G A 1406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.426;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=1.096;SOR=0.657 GT:AD:DP:GQ:PL 0/1:83,61:144:99:1435,0,2044 11 60164204 rs2241920 G A 1745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-2.253;SOR=0.544 GT:AD:DP:GQ:PL 0/1:64,76:140:99:1774,0,1482 11 60165352 rs3217518 ATT A 2077.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=2.07;QD=14.95;ReadPosRankSum=0.75;SOR=0.657 GT:AD:DP:GQ:PL 0/1:81,58:139:99:2115,0,3567 11 60173360 rs4938941 A G 991.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.339;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.299;SOR=1.132 GT:AD:DP:GQ:PL 0/1:42,42:84:99:1020,0,913 11 60182970 rs7131283 A T 1593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.379;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=4.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=0.144;SOR=0.508 GT:AD:DP:GQ:PL 0/1:103,75:178:99:1622,0,2388 11 60184191 rs3825020 G A 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.179;SOR=0.621 GT:AD:DP:GQ:PL 0/1:91,104:195:99:2503,0,2262 11 60198328 rs708229 C T 1275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=0.186;SOR=0.669 GT:AD:DP:GQ:PL 0/1:68,59:127:99:1304,0,1648 11 60264947 rs2298552 C T 2668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=0.102;SOR=0.679 GT:AD:DP:GQ:PL 0/1:120,115:235:99:2697,0,2989 11 60265002 rs2298553 C T 1966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.16;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.6;SOR=0.736 GT:AD:DP:GQ:PL 0/1:89,91:180:99:1995,0,2312 11 60285575 rs10736706 A G 3045.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3074,308,0 11 60291413 rs6591595 C T 1155.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1184,120,0 11 60531346 rs1032939 T G 2289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.302;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=6.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.486;SOR=1.122 GT:AD:DP:GQ:PL 0/1:119,99:218:99:2318,0,2878 11 60559805 rs931861 A G 1704.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.06;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1733,188,0 11 60609972 rs2074422 A G 3247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.064;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.481;SOR=0.673 GT:AD:DP:GQ:PL 0/1:149,126:275:99:3276,0,3548 11 60620585 rs2467642 A G 13267.8 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.37;SOR=0.905 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,299:299:99:1|1:60620585_A_G:13296,900,0 11 60620590 rs2428461 C G 13147.8 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.03;SOR=0.87 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,292:292:99:1|1:60620585_A_G:13176,888,0 11 60635091 rs550479 T C 7614.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7643,753,0 11 60637164 rs489172 C T 8236.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,261:261:99:8265,783,0 11 60638470 rs566411 A G 6916.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6945,686,0 11 60666116 rs3763841 G T 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.826;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=0.719;SOR=0.665 GT:AD:DP:GQ:PL 0/1:32,54:86:99:1242,0,927 11 60666341 rs3763840 G A 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.573;SOR=0.715 GT:AD:DP:GQ:PL 0/1:86,87:173:99:1920,0,1999 11 60673868 rs17155470 T C 964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.368;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=12.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.817;SOR=1.885 GT:AD:DP:GQ:PL 0/1:56,41:97:99:993,0,1248 11 60689445 rs555835 T C 3487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=2.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=0.588;SOR=0.619 GT:AD:DP:GQ:PL 0/1:120,139:259:99:3516,0,3103 11 60695301 rs575123 C A 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.351;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=1.084;SOR=0.727 GT:AD:DP:GQ:PL 0/1:76,93:169:99:2535,0,1792 11 60698054 rs2074416 G A 2151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.201;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.835;SOR=0.618 GT:AD:DP:GQ:PL 0/1:103,87:190:99:2180,0,2354 11 60701136 rs9513 C G 2856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.62;SOR=0.708 GT:AD:DP:GQ:PL 0/1:127,128:255:99:2885,0,3045 11 60701987 rs7715 G A 3196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=1.391;SOR=0.497 GT:AD:DP:GQ:PL 0/1:135,132:267:99:3225,0,3301 11 60704213 rs2469887 C T 2145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.874;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=3.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=0.709;SOR=0.912 GT:AD:DP:GQ:PL 0/1:136,92:228:99:2174,0,3454 11 60705454 rs2905692 A G 7675.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7704,779,0 11 60776103 rs61899223 T C 3679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=1.864;SOR=0.706 GT:AD:DP:GQ:PL 0/1:144,155:299:99:3708,0,3383 11 60776209 rs11230563 C T 2998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.32;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-1.448;SOR=0.6 GT:AD:DP:GQ:PL 0/1:124,124:248:99:3027,0,3021 11 60776306 rs2074225 C T 2532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.96;ReadPosRankSum=-1.971;SOR=1.016 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,67:141:99:0|1:60776306_C_T:2561,0,2928 11 60776307 rs79848107 G C 2532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.84;ReadPosRankSum=-2.106;SOR=0.986 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,67:142:99:0|1:60776306_C_T:2561,0,2928 11 60776334 rs2905518 A G 3590.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.205;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.5;ReadPosRankSum=-0.84;SOR=1.315 GT:AD:DP:GQ:PL 1/1:2,112:114:99:3619,293,0 11 60784934 rs2074231 A G 260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.302;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.35;ReadPosRankSum=1.406;SOR=0.665 GT:AD:DP:GQ:PL 0/1:43,17:60:99:289,0,957 11 60785038 rs2074232 A G 518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.436;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=7.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.5;ReadPosRankSum=0.953;SOR=1.028 GT:AD:DP:GQ:PL 0/1:38,23:61:99:547,0,926 11 60785352 rs1050922 A G 2295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.058;SOR=0.548 GT:AD:DP:GQ:PL 0/1:90,97:187:99:2324,0,2321 11 60886913 rs2241002 C T 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.03;SOR=0.682 GT:AD:DP:GQ:PL 0/1:85,78:163:99:1779,0,2119 11 60891421 rs12364279 C T 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=5.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=0.826;SOR=0.421 GT:AD:DP:GQ:PL 0/1:38,51:89:99:1201,0,849 11 60892606 rs637186 A G 5422.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5451,585,0 11 60899767 rs754382 A G 3524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.046;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=2.212;SOR=0.666 GT:AD:DP:GQ:PL 0/1:128,126:254:99:3553,0,3272 11 60906279 rs80029472 G T 1355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.847;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=0.509;SOR=0.808 GT:AD:DP:GQ:PL 0/1:93,63:156:99:1384,0,2134 11 60971069 rs1610547 A G 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.256;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=9.952;MLEAC=1;MLEAF=0.5;MQ=53.39;MQRankSum=-8.178;QD=7.84;ReadPosRankSum=-3.224;SOR=0.927 GT:AD:DP:GQ:PL 0/1:159,80:239:99:1903,0,3917 11 61106525 rs2512809 C T 3324.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=1.588 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3353,323,0 11 61106892 rs2513329 G C 7046.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7075,717,0 11 61108974 rs2260655 G A 5063.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.82;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5092,544,0 11 61112802 rs2305465 C T 4587.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4616,467,0 11 61165280 rs3741265 G A 4299.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=1.219 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4328,429,0 11 61165731 rs11382548 C CA 5437.73 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=44.94;SOR=0.968 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:61165731_C_CA:5475,367,0 11 61165741 rs10897158 G C 5521.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=44.17;SOR=0.92 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,125:125:99:1|1:61165731_C_CA:5550,376,0 11 61179285 rs3019198 G A 3877.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3906,402,0 11 61249383 rs3019200 C A 4193.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4222,429,0 11 61508074 rs11828739 C T 4684.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4713,464,0 11 61511133 rs3741251 G A 3560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.611;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=0.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=1.34;SOR=0.657 GT:AD:DP:GQ:PL 0/1:177,155:332:99:3589,0,4208 11 61539020 rs149803 C G 3493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.04;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=2.263;SOR=0.602 GT:AD:DP:GQ:PL 0/1:148,153:301:99:3522,0,3446 11 61645967 rs174453 C G 2321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.836;SOR=0.476 GT:AD:DP:GQ:PL 0/1:112,104:216:99:2350,0,2631 11 61658629 rs693672 T C 1516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.537;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=2.472;SOR=0.622 GT:AD:DP:GQ:PL 0/1:58,58:116:99:1545,0,1335 11 61658800 rs174465 C T 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.078;SOR=0.494 GT:AD:DP:GQ:PL 0/1:91,91:182:99:2058,0,2361 11 61669946 rs3815045 G A 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.245;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=6.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=-1.258;SOR=0.887 GT:AD:DP:GQ:PL 0/1:116,69:185:99:1504,0,2650 11 61672235 rs174473 T C 2600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.064;SOR=0.573 GT:AD:DP:GQ:PL 0/1:123,111:234:99:2629,0,3045 11 61672265 rs174474 T C 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.253;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.71;SOR=0.943 GT:AD:DP:GQ:PL 0/1:92,82:174:99:2115,0,2370 11 61687674 rs2524290 G A 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.824;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=0.635;SOR=0.584 GT:AD:DP:GQ:PL 0/1:113,86:199:99:1902,0,3113 11 61719387 rs1800007 T C 2232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.51;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=3.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.908;SOR=0.846 GT:AD:DP:GQ:PL 0/1:91,95:186:99:2261,0,2302 11 61722645 rs1109748 C A 2828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.632;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=2.511;SOR=0.753 GT:AD:DP:GQ:PL 0/1:120,113:233:99:2857,0,3402 11 61725599 rs113492158 A ATCCTCCTCC 8220.73 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=47.79;SOR=1.267 GT:AD:DP:GQ:PL 1/1:0,172:185:99:8256,553,0 11 61730234 rs1800009 T C 3240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-0.793;SOR=0.745 GT:AD:DP:GQ:PL 0/1:104,132:236:99:3269,0,2627 11 61895741 rs1675131 A G 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.521;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=3.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.839;SOR=0.628 GT:AD:DP:GQ:PL 0/1:91,65:156:99:1769,0,2203 11 61897359 rs1675133 C T 3183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.58;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.116;SOR=0.551 GT:AD:DP:GQ:PL 0/1:100,134:234:99:3212,0,2288 11 61906374 rs1675126 T C 2892.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2921,291,0 11 61908440 rs2277283 T C 3190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.504;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.439;SOR=0.709 GT:AD:DP:GQ:PL 0/1:135,134:269:99:3219,0,3204 11 61913196 rs7129085 G T 2108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.735;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.932;SOR=0.533 GT:AD:DP:GQ:PL 0/1:107,99:206:99:2137,0,2725 11 61914260 rs116873148 G A 5673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.274;ClippingRankSum=0;DB;DP=505;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.331;SOR=0.569 GT:AD:DP:GQ:PL 0/1:253,248:501:99:5702,0,5790 11 61959725 rs3831484 GTC G 986.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.31;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.588;QD=15.42;ReadPosRankSum=-0.074;SOR=0.456 GT:AD:DP:GQ:PL 0/1:35,29:64:99:1024,0,1358 11 61977858 rs201416395 CTTTTTTT C 1643.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.567;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.292;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.417;QD=35.73;ReadPosRankSum=2.023;SOR=1.219 GT:AD:DP:GQ:PL 0/1:9,37:73:99:1647,0,907 11 62010863 rs2232950 C T 1621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-0.313;SOR=0.669 GT:AD:DP:GQ:PL 0/1:63,68:131:99:1650,0,1563 11 62063899 rs35328961 C CA 2094.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.65;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.24;ReadPosRankSum=-1.479;SOR=0.824 GT:AD:DP:GQ:PL 1/1:4,79:83:99:2132,145,0 11 62291953 rs61895404 A T 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.729;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.62;SOR=0.746 GT:AD:DP:GQ:PL 0/1:98,92:190:99:2275,0,2279 11 62292882 rs566144 G T 14130.8 PASS AC=2;AF=1;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=31.06;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,455:455:99:14159,1364,0 11 62293822 rs12366127 C T 4686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=4.013;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-1.033;QD=11.69;ReadPosRankSum=-0.818;SOR=0.863 GT:AD:DP:GQ:PL 0/1:208,193:401:99:4715,0,5461 11 62293948 rs486903 G A 5526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0;DB;DP=546;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.181;QD=10.14;ReadPosRankSum=-1.078;SOR=0.797 GT:AD:DP:GQ:PL 0/1:308,237:545:99:5555,0,7992 11 62334908 rs1061093 G C 2300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.474;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.144;SOR=0.777 GT:AD:DP:GQ:PL 0/1:97,97:194:99:2329,0,2297 11 62346131 rs3888173 C T 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-1.36;SOR=0.75 GT:AD:DP:GQ:PL 0/1:99,95:194:99:2433,0,2543 11 62365619 rs11231155 A G 1602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.244;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.84;ReadPosRankSum=2.034;SOR=0.635 GT:AD:DP:GQ:PL 0/1:49,59:108:99:1631,0,1147 11 62369881 rs35156678 G A 2631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.919;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.66;ReadPosRankSum=0.529;SOR=0.443 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,75:158:99:0|1:62369881_G_A:2660,0,4266 11 62369884 rs35880596 C G 2640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.719;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.15;ReadPosRankSum=0.087;SOR=0.355 GT:AD:DP:GQ:PGT:PID:PL 0/1:81,73:154:99:0|1:62369881_G_A:2669,0,4173 11 62370155 rs71490394 G A 5635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.484;ClippingRankSum=0;DB;DP=431;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.567;SOR=0.737 GT:AD:DP:GQ:PL 0/1:189,239:428:99:5664,0,4820 11 62374491 rs375338318 G A 1909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.675;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.676;SOR=0.85 GT:AD:DP:GQ:PL 0/1:90,80:170:99:1938,0,2001 11 62378660 rs12808829 G A 3857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.127;SOR=0.633 GT:AD:DP:GQ:PL 0/1:159,158:317:99:3886,0,4265 11 62378801 rs11553576 T C 3813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=0.517;SOR=0.618 GT:AD:DP:GQ:PL 0/1:145,139:286:99:3842,0,3603 11 62381106 rs1799959 G C 6527.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6556,621,0 11 62381808 rs1801144 G C 2947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.172;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-0.403;SOR=0.508 GT:AD:DP:GQ:PL 0/1:100,112:212:99:2976,0,2419 11 62383210 rs369154163 C T 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.635;SOR=0.644 GT:AD:DP:GQ:PL 0/1:124,112:236:99:2574,0,2993 11 62398274 rs113677430 G A 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=4.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=0.182;SOR=1.319 GT:AD:DP:GQ:PL 0/1:41,32:73:99:805,0,1116 11 62437261 . CTTT C 6206.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0;DP=303;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=2.486;QD=20.69;ReadPosRankSum=-0.371;SOR=0.68 GT:AD:DP:GQ:PL 0/1:139,161:300:99:6244,0,5853 11 62439569 rs13941 G A 4801.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4830,461,0 11 62532798 rs41542313 C T 916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-2.226;SOR=0.829 GT:AD:DP:GQ:PL 0/1:48,42:90:99:945,0,1287 11 62563353 rs539465 G A 2548.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2577,249,0 11 62564009 rs4693 T C 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-1.286;SOR=0.382 GT:AD:DP:GQ:PL 0/1:45,52:97:99:1327,0,1211 11 62847453 rs7945121 T C 1402.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1431,144,0 11 62848445 rs11231340 A G 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.193;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.488;SOR=0.73 GT:AD:DP:GQ:PL 0/1:99,82:181:99:1817,0,2349 11 62848487 rs11231341 A C 5021.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5050,504,0 11 62848568 rs11231342 C G 1847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.9;ReadPosRankSum=1.819;SOR=0.627 GT:AD:DP:GQ:PL 0/1:52,72:124:99:1876,0,1363 11 62863518 rs7113279 A G 1758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.471;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.887;SOR=0.746 GT:AD:DP:GQ:PL 0/1:62,76:138:99:1787,0,1282 11 62886800 rs4963245 G C 1622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.965;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=1.061;SOR=0.542 GT:AD:DP:GQ:PL 0/1:78,71:149:99:1651,0,1771 11 62902172 rs1939782 A C 2492.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.009;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.33;ReadPosRankSum=2.727;SOR=0.263 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2521,244,0 11 62910849 rs1939749 T C 4809.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.387 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4838,484,0 11 62911079 rs1939748 G C 5395.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5424,492,0 11 63057925 rs1790218 G A 5661.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5690,542,0 11 63064823 rs576641 T C 6154.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6183,610,0 11 63072310 rs1201559 C T 5023.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5052,501,0 11 63176367 rs4088469 G A 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.398;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=0.621;SOR=0.865 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1189,0,1126 11 63258416 rs10897424 T C 4566.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.02;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4595,496,0 11 63313644 rs584905 T C 3435.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3464,347,0 11 63413962 rs147319344 AAAAT A 2656.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=42.85;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2694,187,0 11 63487386 rs542998 T C 5036.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5065,487,0 11 63533334 . TTCC T 321.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.286;ClippingRankSum=0;DP=310;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=4.718;QD=1.23;ReadPosRankSum=1.327;SOR=0.74 GT:AD:DP:GQ:PL 0/1:235,27:267:99:350,0,10318 11 63668557 rs224174 C T 2316.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2345,249,0 11 63673603 rs10625190 C CTG 3442.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0;QD=20.62;ReadPosRankSum=-1.165;SOR=0.806 GT:AD:DP:GQ:PL 0/1:21,146:174:99:3480,0,222 11 63679369 rs320108 T C 2820.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.61;SOR=3.826 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2849,223,0 11 63681513 rs10897461 T C 5972.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6001,575,0 11 63713317 rs3740637 G A 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.362;SOR=0.881 GT:AD:DP:GQ:PL 0/1:62,52:114:99:1170,0,1495 11 63742263 rs61759492 C A 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=3.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=2.146;SOR=0.959 GT:AD:DP:GQ:PL 0/1:90,91:181:99:2084,0,2224 11 63767186 rs709594 A G 2557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.657;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.707;SOR=0.741 GT:AD:DP:GQ:PL 0/1:121,98:219:99:2586,0,3030 11 63767249 rs11600062 C T 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.084;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.948;SOR=0.915 GT:AD:DP:GQ:PL 0/1:87,66:153:99:1700,0,2304 11 63883985 rs614397 T C 7596.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7625,765,0 11 63884027 rs614035 C T 2462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.079;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.069;SOR=0.66 GT:AD:DP:GQ:PL 0/1:119,102:221:99:2491,0,2942 11 63884747 rs35247680 C T 4085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.588;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=4.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.917;SOR=0.8 GT:AD:DP:GQ:PL 0/1:152,176:328:99:4114,0,3836 11 63885287 rs947939 C T 4229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=-1.056;SOR=0.69 GT:AD:DP:GQ:PL 0/1:120,159:279:99:4258,0,3068 11 63885632 rs4379854 A G 7674.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7703,734,0 11 63885704 rs677447 C T 3002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.178;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=5.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=2.789;SOR=0.59 GT:AD:DP:GQ:PL 0/1:129,123:252:99:3031,0,3096 11 63967770 rs11231722 C G 2875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.511;SOR=0.649 GT:AD:DP:GQ:PL 0/1:129,128:257:99:2904,0,2910 11 63978067 rs78038516 C G 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.783;SOR=0.913 GT:AD:DP:GQ:PL 0/1:52,50:102:99:1403,0,1449 11 63986713 rs11603538 C A 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.096;SOR=0.779 GT:AD:DP:GQ:PL 0/1:56,48:104:99:1170,0,1460 11 63987339 rs11231726 C T 3162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.832;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.421;SOR=0.612 GT:AD:DP:GQ:PL 0/1:166,141:307:99:3191,0,4598 11 63997329 rs633561 A G 6669.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.88;SOR=0.988 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,152:152:99:1|1:63997329_A_G:6698,463,0 11 63997338 rs633557 T C 6544.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.22;SOR=0.997 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,148:148:99:1|1:63997329_A_G:6573,451,0 11 64004692 rs12366035 C T 268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=-0.742;QD=3.54;ReadPosRankSum=0.969;SOR=0.964 GT:AD:DP:GQ:PL 0/1:59,17:76:99:297,0,1826 11 64011441 rs654573 T C 5854.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5883,572,0 11 64012225 rs605187 G C 7467.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.37;QD=31.64;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7496,708,0 11 64022459 rs632439 A G 4922.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4951,477,0 11 64023971 rs7943988 G A 2430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-1.359;SOR=0.795 GT:AD:DP:GQ:PL 0/1:123,104:227:99:2459,0,3223 11 64026144 rs2244625 G A 5349.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5378,527,0 11 64026639 rs12146487 G A 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=1.874;SOR=0.635 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1453,0,2208 11 64026685 rs28395882 C T 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.193;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=1.263;SOR=0.624 GT:AD:DP:GQ:PL 0/1:80,68:148:99:1712,0,1962 11 64039175 rs2286615 G A 3405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.705;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.715;SOR=0.797 GT:AD:DP:GQ:PL 0/1:179,153:332:99:3434,0,4672 11 64066859 rs2232417 G A 4549.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.334 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4578,434,0 11 64070940 rs11231746 T C 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=0.884;SOR=0.915 GT:AD:DP:GQ:PL 0/1:45,59:104:99:1566,0,1003 11 64083252 rs72924126 T C 353.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.058;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.01;MQRankSum=-17.879;QD=0.96;ReadPosRankSum=-0.788;SOR=0.705 GT:AD:DP:GQ:PL 0/1:318,50:368:99:382,0,8506 11 64083269 rs201336331 G A 1437.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.47;ClippingRankSum=0;DB;DP=403;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.9;MQRankSum=-19.594;QD=3.57;ReadPosRankSum=1.685;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 0/1:341,62:403:99:0|1:64083269_G_A:1466,0,14313 11 64083276 rs200055490 A T 1459.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.606;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.87;MQRankSum=-19.845;QD=3.53;ReadPosRankSum=2.385;SOR=0.726 GT:AD:DP:GQ:PGT:PID:PL 0/1:349,64:413:99:0|1:64083269_G_A:1488,0,14485 11 64083290 rs150848359 G A 1644.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.741;ClippingRankSum=0;DB;DP=415;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.5;MQ=58.8;MQRankSum=-19.665;QD=3.96;ReadPosRankSum=3.544;SOR=0.81 GT:AD:DP:GQ:PGT:PID:PL 0/1:350,65:415:99:0|1:64083290_G_A:1673,0,14985 11 64083293 rs201971362 G T 1632.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=0.74;MLEAC=1;MLEAF=0.5;MQ=58.79;MQRankSum=-19.616;QD=3.95;ReadPosRankSum=3.54;SOR=0.835 GT:AD:DP:GQ:PGT:PID:PL 0/1:348,65:413:99:0|1:64083290_G_A:1661,0,15199 11 64083295 . CGGG C 1611.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.96;ClippingRankSum=0;DP=423;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.5;MQ=58.82;MQRankSum=-19.86;QD=3.81;ReadPosRankSum=3.664;SOR=0.917 GT:AD:DP:GQ:PGT:PID:PL 0/1:358,65:423:99:0|1:64083290_G_A:1649,0,15584 11 64083300 rs199950340 G A 1651.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.233;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.5;MQ=58.76;MQRankSum=-19.695;QD=3.97;ReadPosRankSum=3.428;SOR=0.943 GT:AD:DP:GQ:PGT:PID:PL 0/1:350,66:416:99:0|1:64083290_G_A:1680,0,15164 11 64083318 . G A 1853.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.769;ClippingRankSum=0;DP=416;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.5;MQ=58.46;MQRankSum=-19.306;QD=4.47;ReadPosRankSum=1.716;SOR=0.729 GT:AD:DP:GQ:PGT:PID:PL 0/1:344,71:415:99:0|1:64083318_G_A:1882,0,14292 11 64083320 rs201072913 T C 1847.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.341;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.5;MQ=58.43;MQRankSum=-19.084;QD=4.55;ReadPosRankSum=1.204;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL 0/1:335,71:406:99:0|1:64083318_G_A:1876,0,14376 11 64083328 rs79204587 C T 1815.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.675;ClippingRankSum=0;DB;DP=396;ExcessHet=3.0103;FS=4.514;MLEAC=1;MLEAF=0.5;MQ=58.49;MQRankSum=-18.784;QD=4.6;ReadPosRankSum=0.78;SOR=0.591 GT:AD:DP:GQ:PGT:PID:PL 0/1:327,68:395:99:0|1:64083318_G_A:1844,0,13845 11 64083331 rs80310817 C T 1800.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.544;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=-17.984;QD=4.62;ReadPosRankSum=0.947;SOR=0.546 GT:AD:DP:GQ:PGT:PID:PL 0/1:325,65:390:99:0|1:64083318_G_A:1829,0,13457 11 64085785 rs7938623 A G 9619.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,302:302:99:9648,906,0 11 64107735 rs663743 G A 1929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.397;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=0.204;SOR=1.157 GT:AD:DP:GQ:PL 0/1:68,78:146:99:1958,0,1566 11 64109118 rs647152 T G 3660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.137;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.469;SOR=0.679 GT:AD:DP:GQ:PL 0/1:143,148:291:99:3689,0,3358 11 64110668 rs574835 G A 2785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.721;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=1.131;SOR=0.642 GT:AD:DP:GQ:PL 0/1:126,116:242:99:2814,0,3011 11 64110683 rs479552 G C 2772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.228;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=1.227;SOR=0.637 GT:AD:DP:GQ:PL 0/1:127,115:242:99:2801,0,3162 11 64111928 rs685870 T C 7711.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7740,777,0 11 64116843 rs1318165 A C 7092.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7121,728,0 11 64124515 rs612448 T C 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.363;SOR=0.526 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1625,0,1558 11 64127744 rs521950 A G 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.542;SOR=0.798 GT:AD:DP:GQ:PL 0/1:74,76:150:99:1955,0,1914 11 64137875 rs11606081 T C 2826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.872;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.376;SOR=0.812 GT:AD:DP:GQ:PL 0/1:107,107:214:99:2855,0,2699 11 64138805 rs11542299 T C 1983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.441;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-1.295;SOR=0.713 GT:AD:DP:GQ:PL 0/1:106,90:196:99:2012,0,2413 11 64138905 rs17857342 T G 1342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.921;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.762;SOR=0.941 GT:AD:DP:GQ:PL 0/1:67,54:121:99:1371,0,1646 11 64359286 rs3825016 C T 5377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0;DB;DP=425;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=0;QD=12.74;ReadPosRankSum=-2.082;SOR=0.911 GT:AD:DP:GQ:PL 0/1:206,216:422:99:5406,0,5298 11 64360274 rs11231825 T C 1239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.905;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=0.306;SOR=0.878 GT:AD:DP:GQ:PL 0/1:82,49:131:99:1268,0,1960 11 64367325 rs1630320 A G 8496.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8525,876,0 11 64367862 rs7932775 T C 1800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.283;SOR=0.954 GT:AD:DP:GQ:PL 0/1:82,84:166:99:1829,0,1775 11 64368428 rs11231837 C T 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.52;SOR=0.45 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1783,0,1848 11 64415767 rs3825074 G A 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.892;SOR=0.79 GT:AD:DP:GQ:PL 0/1:70,60:130:99:1519,0,1949 11 64418900 rs526338 G A 2974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.67;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.789;SOR=0.601 GT:AD:DP:GQ:PL 0/1:168,131:299:99:3003,0,4328 11 64465282 rs17189800 C T 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=0.156;SOR=0.606 GT:AD:DP:GQ:PL 0/1:71,67:138:99:1471,0,1667 11 64480641 rs2518907 G A 2463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.381;SOR=0.638 GT:AD:DP:GQ:PL 0/1:116,106:222:99:2492,0,3032 11 64480930 rs12273892 A T 3482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.03;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=2.359;SOR=0.664 GT:AD:DP:GQ:PL 0/1:136,143:279:99:3511,0,3463 11 64572018 rs2959656 T C 6463.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6492,600,0 11 64572557 rs540012 A G 6721.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6750,648,0 11 64572602 rs2071313 G A 6549.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6578,647,0 11 64597139 rs55669367 C T 3055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.12;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=1.839;SOR=0.65 GT:AD:DP:GQ:PL 0/1:126,123:249:99:3084,0,3334 11 64597205 rs7936466 G T 2719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.613;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.141;SOR=0.747 GT:AD:DP:GQ:PL 0/1:120,104:224:99:2748,0,3066 11 64601933 rs7933683 T C 3723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.169;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-0.513;SOR=0.77 GT:AD:DP:GQ:PL 0/1:141,138:279:99:3752,0,3287 11 64606177 rs653343 C T 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.396;SOR=0.858 GT:AD:DP:GQ:PL 0/1:117,91:208:99:2111,0,2956 11 64607587 rs589984 C T 1226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.121;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.67;ReadPosRankSum=0.52;SOR=0.948 GT:AD:DP:GQ:PL 0/1:108,52:160:99:1255,0,2612 11 64609306 rs56338925 G A 905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.061;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.68;ReadPosRankSum=-1.103;SOR=0.742 GT:AD:DP:GQ:PL 0/1:73,45:118:99:934,0,1973 11 64621856 rs3897618 A G 13474.8 PASS AC=2;AF=1;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,459:459:99:13503,1376,0 11 64622869 rs10897533 G C 8662.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8691,840,0 11 64645871 rs1211284 A G 14062.8 PASS AC=2;AF=1;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,462:462:99:14091,1386,0 11 64669417 rs682673 T C 5538.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5567,521,0 11 64677293 rs656195 G C 11530.8 PASS AC=2;AF=1;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,372:372:99:11559,1116,0 11 64680819 rs618006 G A 8205.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8234,852,0 11 64702815 rs2375087 C T 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=-0.987;QD=11.94;ReadPosRankSum=1.772;SOR=0.395 GT:AD:DP:GQ:PL 0/1:37,38:75:99:924,0,955 11 64799891 rs533301 T C 2190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.299;SOR=0.441 GT:AD:DP:GQ:PL 0/1:78,89:167:99:2219,0,1915 11 64799894 rs678614 A C 6800.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.21;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,178:178:99:6829,535,0 11 64799998 rs534236 T C 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=1.071;SOR=0.717 GT:AD:DP:GQ:PL 0/1:107,102:209:99:2294,0,2497 11 64806270 rs542175 C T 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-1.025;SOR=0.777 GT:AD:DP:GQ:PL 0/1:82,72:154:99:1682,0,1972 11 64807235 rs495820 C T 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.397;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=2.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.87;ReadPosRankSum=-0.631;SOR=0.455 GT:AD:DP:GQ:PL 0/1:24,57:81:99:1314,0,560 11 64807278 rs495935 A C 985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.457;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.6;ReadPosRankSum=1.502;SOR=0.662 GT:AD:DP:GQ:PL 0/1:16,40:56:99:1014,0,284 11 64809090 rs12271134 T G 7065.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.47;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,205:205:99:7094,615,0 11 64809133 rs10792455 T G 2747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=3.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.663;SOR=0.921 GT:AD:DP:GQ:PL 0/1:133,108:241:99:2776,0,3527 11 64809167 rs10792456 A G 8418.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8447,792,0 11 64812857 rs35124799 G A 2218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=2.329;SOR=0.623 GT:AD:DP:GQ:PL 0/1:116,101:217:99:2247,0,2823 11 64851453 rs35819335 CT C 2461.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.182;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.56;QD=13.83;ReadPosRankSum=0.345;SOR=0.953 GT:AD:DP:GQ:PL 0/1:97,81:178:99:2499,0,3063 11 64855986 rs2282498 A G 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.856;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.06;ReadPosRankSum=0.998;SOR=0.646 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1364,0,1130 11 64856108 rs2282499 A C 1399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.627;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.209;SOR=0.441 GT:AD:DP:GQ:PL 0/1:53,55:108:99:1428,0,1271 11 64856500 rs525781 A G 3923.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3952,387,0 11 64863969 rs61505294 TG T 481.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.582;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-1.051;SOR=0.902 GT:AD:DP:GQ:PL 0/1:24,21:45:99:519,0,601 11 64880090 rs4930284 G C 8194.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8223,828,0 11 64882789 rs1129195 C T 1674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.638;SOR=0.54 GT:AD:DP:GQ:PL 0/1:74,69:143:99:1703,0,2068 11 64884052 rs1546532 G A 3414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=5.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.014;SOR=0.826 GT:AD:DP:GQ:PL 0/1:186,140:326:99:3443,0,4829 11 64900270 rs3825073 G T 1372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.194;SOR=0.701 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1401,0,2094 11 64975745 rs17886317 C T 882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.628;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=5.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.174;SOR=1.313 GT:AD:DP:GQ:PL 0/1:51,35:86:99:911,0,1243 11 64977937 rs542380 A G 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.932;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=4.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.659;SOR=1.273 GT:AD:DP:GQ:PL 0/1:39,38:77:99:1000,0,890 11 65064690 rs487989 G A 6041.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6070,634,0 11 65124408 rs61732319 A G 3007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.192;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.183;SOR=0.864 GT:AD:DP:GQ:PL 0/1:106,111:217:99:3036,0,2695 11 65144075 rs624307 T C 7298.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7327,723,0 11 65168281 rs2073801 C T 4953.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4982,524,0 11 65314902 rs74202491 C T 1865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.827;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0.498;QD=12.27;ReadPosRankSum=0.068;SOR=0.695 GT:AD:DP:GQ:PL 0/1:72,80:152:99:1894,0,1987 11 65319751 rs11545200 G A 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.138;SOR=0.719 GT:AD:DP:GQ:PL 0/1:99,81:180:99:1941,0,2658 11 65325325 . CCAG C 224.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.33;ReadPosRankSum=-0.074;SOR=0.715 GT:AD:DP:GQ:PL 0/1:151,18:169:99:262,0,6064 11 65347636 rs1194100 G C 10996.8 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,335:335:99:11025,1005,0 11 65349849 rs1194099 A T 9734.77 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,325:325:99:9763,974,0 11 65350854 . C T 3074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.767;ClippingRankSum=0;DP=242;ExcessHet=3.0103;FS=5.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-1.443;SOR=1.01 GT:AD:DP:GQ:PL 0/1:120,121:241:99:3103,0,3297 11 65351074 rs10896018 G A 3100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.268;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=1.147;SOR=0.879 GT:AD:DP:GQ:PL 0/1:162,126:288:99:3129,0,4030 11 65357697 rs1151503 A G 2962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.631;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=1.843;SOR=0.616 GT:AD:DP:GQ:PL 0/1:133,114:247:99:2991,0,3102 11 65359252 . A C 65.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.449;ClippingRankSum=0;DP=53;ExcessHet=3.0103;FS=37.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.4;ReadPosRankSum=-2.824;SOR=3.893 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,6:47:94:0|1:65359244_CG_C:94,0,2421 11 65366847 rs10791820 C T 3420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=11.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=-0.404;SOR=1.313 GT:AD:DP:GQ:PL 0/1:95,130:225:99:3449,0,2370 11 65367253 rs4326800 C T 2201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.08;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.373;SOR=0.804 GT:AD:DP:GQ:PL 0/1:78,84:162:99:2230,0,2016 11 65380916 rs2004649 G A 3379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.719;SOR=0.873 GT:AD:DP:GQ:PL 0/1:141,143:284:99:3408,0,3465 11 65383896 rs7947140 G C 6230.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6259,592,0 11 65384727 rs12790427 C T 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=7.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.85;ReadPosRankSum=1.936;SOR=0.288 GT:AD:DP:GQ:PL 0/1:40,85:125:99:2135,0,892 11 65385606 rs1151489 A G 7282.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7311,731,0 11 65387378 rs61744384 T A 2713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-0.773;SOR=0.919 GT:AD:DP:GQ:PL 0/1:95,117:212:99:2742,0,2254 11 65412467 rs2306364 G A 1383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.04;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=0.761;SOR=0.622 GT:AD:DP:GQ:PL 0/1:95,63:158:99:1412,0,2468 11 65415028 rs4930157 T G 5655.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.27;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5684,510,0 11 65546857 rs610037 A C 4082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.241;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=10.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-0.541;SOR=1.109 GT:AD:DP:GQ:PL 0/1:186,159:345:99:4111,0,4664 11 65623519 rs4621 G A 2709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.681;SOR=0.825 GT:AD:DP:GQ:PL 0/1:103,115:218:99:2738,0,2597 11 65628334 rs13817 G A 3245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=4.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=1.631;SOR=0.78 GT:AD:DP:GQ:PL 0/1:157,134:291:99:3274,0,4077 11 65629932 rs659857 T C 2266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=-2.594;SOR=0.759 GT:AD:DP:GQ:PL 0/1:80,83:163:99:2295,0,3935 11 65629934 rs545500 G C 3334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=4.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.21;ReadPosRankSum=-2.275;SOR=0.798 GT:AD:DP:GQ:PL 0/1:79,86:165:99:3363,0,3799 11 65631167 rs648732 C T 3020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.071;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=2.043;SOR=0.708 GT:AD:DP:GQ:PL 0/1:146,126:272:99:3049,0,3646 11 65631973 rs630303 G A 1428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.114;SOR=1.041 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1457,0,2016 11 65632262 rs558114 G T 1544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.683;SOR=0.823 GT:AD:DP:GQ:PL 0/1:79,69:148:99:1573,0,1879 11 65636053 rs601314 T C 6174.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6203,612,0 11 65638719 rs633800 G A 3435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.56;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.811;SOR=0.825 GT:AD:DP:GQ:PL 0/1:140,164:304:99:3464,0,3010 11 65649774 rs604630 A G 6693.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6722,618,0 11 65649984 rs687672 T C 5536.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.123;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.26;ReadPosRankSum=-0.835;SOR=0.773 GT:AD:DP:GQ:PL 1/1:2,181:183:99:5565,499,0 11 65664346 rs637571 T C 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.187;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-1.022;SOR=0.754 GT:AD:DP:GQ:PL 0/1:96,70:166:99:1769,0,2171 11 65667796 rs1058068 G A 1751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.686;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=4.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.389;SOR=0.41 GT:AD:DP:GQ:PL 0/1:85,78:163:99:1780,0,2267 11 65684929 rs9667389 C T 7865.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7894,779,0 11 65685225 rs7947504 T C 9518.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=3.24;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.71;ReadPosRankSum=-0.56;SOR=0.402 GT:AD:DP:GQ:PL 1/1:1,309:310:99:9547,889,0 11 65713207 rs9795469 T C 6379.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.587;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.81;ReadPosRankSum=-0.597;SOR=0.818 GT:AD:DP:GQ:PL 1/1:2,236:238:99:6408,663,0 11 65727301 rs491973 A G 3080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.972;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.762;SOR=0.68 GT:AD:DP:GQ:PL 0/1:144,130:274:99:3109,0,3176 11 65732651 rs550435 G A 3418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.068;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=6.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.667;SOR=0.683 GT:AD:DP:GQ:PL 0/1:134,145:279:99:3447,0,3157 11 65732800 rs552130 T C 2083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.646;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=10.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.21;ReadPosRankSum=0.142;SOR=1.327 GT:AD:DP:GQ:PL 0/1:63,74:137:99:2112,0,1551 11 65733393 rs688862 C T 1730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.878;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.506;SOR=0.588 GT:AD:DP:GQ:PL 0/1:72,63:135:99:1759,0,1919 11 65735174 rs660118 G C 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=5.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.234;SOR=0.885 GT:AD:DP:GQ:PL 0/1:105,93:198:99:2218,0,2632 11 65744247 rs622779 G A 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=0.349;SOR=0.722 GT:AD:DP:GQ:PL 0/1:56,57:113:99:1375,0,1487 11 65767153 rs507672 A G 782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=4.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.818;SOR=0.332 GT:AD:DP:GQ:PL 0/1:34,36:70:99:811,0,814 11 65779590 rs1131544 C T 3218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.806;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=1.48;SOR=0.627 GT:AD:DP:GQ:PL 0/1:94,133:227:99:3247,0,2534 11 65788072 rs3814747 C T 3919.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3948,374,0 11 65790527 rs2845570 G T 2774.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=1.721 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2803,258,0 11 65810209 rs61895584 C T 4997.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5026,520,0 11 65810749 rs7937692 T C 8376.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.85;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8405,765,0 11 66001418 rs2236651 C T 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.428;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-2.953;SOR=0.796 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1783,0,2088 11 66006323 rs476551 G C 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=3.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.014;SOR=0.393 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1072,0,1004 11 66010633 rs524268 T C 3701.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.35;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3730,333,0 11 66031660 rs1151539 C T 2390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.56;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.993;SOR=0.688 GT:AD:DP:GQ:PL 0/1:124,106:230:99:2419,0,2860 11 66033430 rs2276036 C T 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.125;SOR=0.629 GT:AD:DP:GQ:PL 0/1:114,110:224:99:2751,0,3016 11 66050712 rs4073582 G A 2151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.45;SOR=0.674 GT:AD:DP:GQ:PL 0/1:83,88:171:99:2180,0,2084 11 66052832 rs2282568 C G 2635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.626;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-1.352;SOR=0.891 GT:AD:DP:GQ:PL 0/1:113,108:221:99:2664,0,2714 11 66056457 rs7945723 G A 2827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=4.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.668;SOR=0.473 GT:AD:DP:GQ:PL 0/1:115,119:234:99:2856,0,2875 11 66083129 rs3741367 T C 4252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=3.922;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.61;ReadPosRankSum=-0.492;SOR=0.555 GT:AD:DP:GQ:PL 0/1:119,172:291:99:4281,0,2750 11 66083782 rs3741368 G A 3187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.026;QD=11.85;ReadPosRankSum=-1.8;SOR=0.654 GT:AD:DP:GQ:PL 0/1:137,132:269:99:3216,0,3562 11 66099987 rs1784029 C T 9245.77 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9274,947,0 11 66100152 rs1784030 T C 6390.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6419,611,0 11 66101974 rs3016317 C T 5147.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5176,518,0 11 66102557 rs117873455 C T 3108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.778;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.865;SOR=0.648 GT:AD:DP:GQ:PL 0/1:127,116:243:99:3137,0,3219 11 66103481 rs140145986 C T 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.428;SOR=0.738 GT:AD:DP:GQ:PL 0/1:107,99:206:99:2388,0,2739 11 66105194 rs1052566 G A 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.367;SOR=0.821 GT:AD:DP:GQ:PL 0/1:102,86:188:99:2093,0,2800 11 66107674 rs1784035 A G 2796.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2825,279,0 11 66108660 rs947978 C T 4566.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4595,450,0 11 66109033 rs11537993 T C 1638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.232;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=4.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.891;SOR=0.405 GT:AD:DP:GQ:PL 0/1:67,61:128:99:1667,0,1569 11 66131906 rs7125100 A G 3311.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.343 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3340,324,0 11 66188761 rs77600363 G T 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.076;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=-0.736;SOR=0.786 GT:AD:DP:GQ:PL 0/1:90,55:145:99:1197,0,2577 11 66240882 rs2277302 T C 3313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=0.52;SOR=0.913 GT:AD:DP:GQ:PL 0/1:103,134:237:99:3342,0,2401 11 66254085 rs11550299 G T 2823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.22;SOR=0.807 GT:AD:DP:GQ:PL 0/1:146,130:276:99:2852,0,3570 11 66272142 rs1671063 A G 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-1.058;SOR=0.691 GT:AD:DP:GQ:PL 0/1:105,127:232:99:2948,0,2326 11 66272237 rs2305535 G A 2133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=0.274;SOR=0.751 GT:AD:DP:GQ:PL 0/1:75,91:166:99:2162,0,1875 11 66282095 rs2298806 G A 1495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.263;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=0.672;SOR=0.537 GT:AD:DP:GQ:PL 0/1:92,70:162:99:1524,0,2448 11 66288733 rs10896125 G C 1132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.803;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=10.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-1.637;SOR=1.744 GT:AD:DP:GQ:PL 0/1:47,42:89:99:1161,0,1074 11 66297363 rs3816492 C T 2327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.492;SOR=0.894 GT:AD:DP:GQ:PL 0/1:120,105:225:99:2356,0,2859 11 66299515 rs8432 A G 2745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=-1.923;SOR=0.615 GT:AD:DP:GQ:PL 0/1:93,108:201:99:2774,0,2225 11 66313203 rs2305534 T C 3252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.767;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.024;SOR=0.819 GT:AD:DP:GQ:PL 0/1:130,132:262:99:3281,0,2978 11 66328055 rs2229455 A G 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.425;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=2.014;SOR=0.807 GT:AD:DP:GQ:PL 0/1:81,60:141:99:1410,0,1907 11 66328095 rs1815739 T C 1649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.122;SOR=0.802 GT:AD:DP:GQ:PL 0/1:95,71:166:99:1678,0,2443 11 66328719 rs618838 T C 4495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.7;ReadPosRankSum=-0.284;SOR=0.628 GT:AD:DP:GQ:PGT:PID:PL 0/1:132,122:254:99:0|1:66328719_T_C:4524,0,6149 11 66328741 rs2229456 A C 4887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.813;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.74;ReadPosRankSum=-1.453;SOR=0.585 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,138:292:99:0|1:66328719_T_C:4916,0,6607 11 66329639 rs77239910 G A 3602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.35;SOR=0.576 GT:AD:DP:GQ:PL 0/1:155,147:302:99:3631,0,3799 11 66329732 rs540874 A G 3050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=6.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.8;SOR=0.425 GT:AD:DP:GQ:PL 0/1:108,126:234:99:3079,0,2638 11 66331458 rs572846 A G 4229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.119;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-1.423;SOR=0.681 GT:AD:DP:GQ:PL 0/1:160,175:335:99:4258,0,3686 11 66333598 rs545009 C T 2743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=-1.604;SOR=0.844 GT:AD:DP:GQ:PL 0/1:87,101:188:99:2772,0,2264 11 66335548 rs1127894 A G 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.084;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.239;SOR=0.518 GT:AD:DP:GQ:PL 0/1:114,89:203:99:2123,0,2593 11 66358126 rs486584 C T 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.67;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.065;SOR=0.726 GT:AD:DP:GQ:PL 0/1:92,83:175:99:2005,0,2442 11 66373305 rs1127145 G A 2667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=1.708;SOR=0.609 GT:AD:DP:GQ:PL 0/1:132,117:249:99:2696,0,3315 11 66392880 rs11550057 C T 2579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=5.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.296;SOR=1.085 GT:AD:DP:GQ:PL 0/1:88,102:190:99:2608,0,2337 11 66472274 rs4930388 T C 11073.8 PASS AC=2;AF=1;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,370:370:99:11102,1109,0 11 66512290 rs71045961 G GGGC 8266.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.427;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;MQRankSum=0.844;QD=27.28;ReadPosRankSum=-0.552;SOR=0.783 GT:AD:DP:GQ:PL 1/1:13,290:303:99:8304,484,0 11 66837965 rs4930409 T C 6165.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6194,617,0 11 66995603 rs3741189 T C 4108.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4137,431,0 11 67034266 rs2228418 C A 3177.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3206,337,0 11 67050292 rs2071007 G A 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4315,440,0 11 67052466 rs10896164 G A 8267.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8296,818,0 11 67068859 rs2298815 T C 9829.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9858,930,0 11 67071584 rs4244822 C G 4337.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4366,437,0 11 67200819 rs4930427 C T 3556.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3585,348,0 11 67202044 rs1790752 G A 3511.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3540,344,0 11 67202156 rs13859 C T 4216.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4245,439,0 11 67205978 rs872375 G A 8026.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8055,765,0 11 67223920 rs1638564 C G 11287.8 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.62;SOR=1.248 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,253:253:99:1|1:67223920_C_G:11316,762,0 11 67223921 rs1638565 A C 11287.8 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.97;SOR=1.253 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,251:251:99:1|1:67223920_C_G:11316,762,0 11 67226097 rs72934713 C T 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.958;SOR=0.604 GT:AD:DP:GQ:PL 0/1:78,87:165:99:2081,0,1895 11 67257823 rs641081 C A 7729.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.84;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.04;ReadPosRankSum=-0.594;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,248:249:99:7758,735,0 11 67258391 rs4930199 A G 9099.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9128,920,0 11 67263767 rs618633 A G 5789.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.84;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5818,624,0 11 67352256 rs762803 C A 1914.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1943,195,0 11 67352689 rs1695 A G 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.57;ReadPosRankSum=0.493;SOR=0.693 GT:AD:DP:GQ:PL 0/1:44,34:78:99:697,0,1070 11 67353579 rs1138272 C T 738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.536;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.075;SOR=0.999 GT:AD:DP:GQ:PL 0/1:53,33:86:99:767,0,1262 11 67353844 rs1871042 C T 718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.57;ReadPosRankSum=-0.541;SOR=0.963 GT:AD:DP:GQ:PL 0/1:61,34:95:99:747,0,1645 11 67353970 rs4891 T C 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.081;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.061;SOR=0.771 GT:AD:DP:GQ:PL 0/1:71,76:147:99:1689,0,1503 11 67395714 rs7124513 C T 2649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=8.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.544;SOR=0.831 GT:AD:DP:GQ:PL 0/1:102,107:209:99:2678,0,2498 11 67402362 rs3758938 T G 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.831;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.513;SOR=0.545 GT:AD:DP:GQ:PL 0/1:95,102:197:99:2433,0,2565 11 67414492 rs948445 C T 6419.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=1.48 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6448,642,0 11 67430762 rs1551886 T C 7215.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7244,732,0 11 67432804 rs2447571 T C 13507.8 PASS AC=2;AF=1;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.01;QD=31.34;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,431:431:99:13536,1293,0 11 67432854 rs6591270 T C 14680.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.034;ClippingRankSum=0;DB;DP=433;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.96;MQRankSum=-0.654;QD=33.9;ReadPosRankSum=-0.653;SOR=0.34 GT:AD:DP:GQ:PL 1/1:1,432:433:99:14709,1261,0 11 67433869 rs1551888 C T 4500.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.61;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4529,476,0 11 67434416 rs4646823 C A 3694.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.215 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3723,374,0 11 67765163 rs5792426 A AG 13945.7 PASS AC=2;AF=1;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=37.29;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,374:374:99:13983,1128,0 11 67786064 rs11433668 A AC 4747.73 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=37.98;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4785,388,0 11 67789293 rs58160034 G GC 16678.7 PASS AC=2;AF=1;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=37.31;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,447:447:99:16716,1354,0 11 67795378 rs58238184 G GC 9785.73 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=35.58;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,275:275:99:9823,833,0 11 67800494 rs3115545 T G 6193.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6222,609,0 11 67814979 rs2471829 G C 6208.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.74;SOR=1.1 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6237,551,0 11 67941390 rs3832715 G GA 738.52 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.71;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=2.261;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=21.1;ReadPosRankSum=1.479;SOR=1.609 GT:AD:DP:GQ:PL 1/1:4,31:35:7:775,7,0 11 67957518 rs2512606 A T 3612.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.22;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3641,383,0 11 68030015 rs901827 C T 4272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.469;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=2.498;SOR=0.675 GT:AD:DP:GQ:PL 0/1:183,180:363:99:4301,0,4937 11 68030173 rs3802746 C A 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=0.023;SOR=0.836 GT:AD:DP:GQ:PL 0/1:123,115:238:99:2902,0,3194 11 68171013 rs545382 T C 4406.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=1.228 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4435,423,0 11 68192690 rs556442 G A 7032.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.8;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7061,756,0 11 68338491 . C CT 90.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0;DP=45;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.33;ReadPosRankSum=2.029;SOR=0.336 GT:AD:DP:GQ:PL 0/1:29,10:45:99:128,0,597 11 68456410 rs3136540 T C 1187.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=0.984 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,37:37:99:1|1:68456400_T_C:1216,111,0 11 68458470 rs1042577 T C 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=1.03;SOR=0.798 GT:AD:DP:GQ:PL 0/1:35,37:72:99:745,0,752 11 68549340 rs2228502 A G 1621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.162;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.779;SOR=0.5 GT:AD:DP:GQ:PL 0/1:89,73:162:99:1650,0,2085 11 68552486 rs2305507 G A 980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-0.151;SOR=0.572 GT:AD:DP:GQ:PL 0/1:47,43:90:99:1009,0,1176 11 68566839 rs3019603 G A 1760.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.79;ReadPosRankSum=1.153;SOR=0.829 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1789,148,0 11 68660113 rs3019588 T C 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.37;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.92;MQRankSum=1.313;QD=5.45;ReadPosRankSum=3.046;SOR=0.657 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,51:214:99:0|1:68660113_T_C:1195,0,8738 11 68660120 rs1611798 C G 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.207;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=57.27;MQRankSum=0.863;QD=5.37;ReadPosRankSum=4.646;SOR=0.787 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,51:216:99:0|1:68660113_T_C:1188,0,8722 11 68747485 rs1939734 G A 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.72;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.829;SOR=0.727 GT:AD:DP:GQ:PL 0/1:94,74:168:99:1734,0,2280 11 68748003 rs34847539 T C 2632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.798;SOR=0.745 GT:AD:DP:GQ:PL 0/1:135,113:248:99:2661,0,3334 11 68777323 rs11544721 T C 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=8.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=1.116;SOR=0.218 GT:AD:DP:GQ:PL 0/1:36,40:76:99:1004,0,876 11 68822739 rs1470892 T C 7037.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7066,740,0 11 68825037 rs3750973 A C 4047.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4076,426,0 11 68834968 rs6591368 T C 2726.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2755,267,0 11 68840160 rs3750965 A G 3497.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3526,336,0 11 68851414 rs2376558 T C 4566.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4595,482,0 11 69063136 rs7117236 C T 4319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.53;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.615;SOR=0.63 GT:AD:DP:GQ:PL 0/1:150,178:328:99:4348,0,3751 11 69063393 rs7103126 T C 4395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.999;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.665;SOR=0.627 GT:AD:DP:GQ:PL 0/1:153,173:326:99:4424,0,3679 11 69063510 rs11539762 G A 3674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.894;SOR=0.567 GT:AD:DP:GQ:PL 0/1:169,145:314:99:3703,0,4362 11 69063728 rs11228610 G C 3627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.03;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=1.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-1.104;SOR=0.802 GT:AD:DP:GQ:PL 0/1:155,150:305:99:3656,0,3894 11 69063767 rs12274095 C A 3045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-1.659;SOR=0.774 GT:AD:DP:GQ:PL 0/1:129,123:252:99:3074,0,3431 11 69462910 rs9344 G A 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.851;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.851;SOR=0.865 GT:AD:DP:GQ:PL 0/1:96,78:174:99:1910,0,2282 11 69934085 rs10898112 G A 3723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.425;SOR=0.584 GT:AD:DP:GQ:PL 0/1:145,164:309:99:3752,0,3335 11 69999252 rs3781663 G A 1001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.465;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-0.566;SOR=0.8 GT:AD:DP:GQ:PL 0/1:65,46:111:99:1030,0,1458 11 70007311 rs2276066 A G 2414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.576;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.221;SOR=0.627 GT:AD:DP:GQ:PL 0/1:119,101:220:99:2443,0,3038 11 70007392 rs2276067 A G 2160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.246;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=0.356;SOR=0.779 GT:AD:DP:GQ:PL 0/1:124,91:215:99:2189,0,3017 11 70033826 rs35553507 C T 1633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.56;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=-1.084;SOR=0.943 GT:AD:DP:GQ:PL 0/1:117,79:196:99:1662,0,2864 11 70034096 rs3740722 G A 3223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.59;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-1.328;SOR=0.683 GT:AD:DP:GQ:PL 0/1:133,128:261:99:3252,0,3226 11 70218498 . TA T 2406.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.96;ReadPosRankSum=-1.556;SOR=0.704 GT:AD:DP:GQ:PL 0/1:58,76:134:99:2444,0,1763 11 71146577 rs909217 G A 3103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.348;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.682;SOR=0.86 GT:AD:DP:GQ:PL 0/1:138,125:263:99:3132,0,3490 11 71146691 rs760241 A G 9418.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,317:317:99:9447,950,0 11 71152258 rs736894 C T 1318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.241;SOR=0.725 GT:AD:DP:GQ:PL 0/1:70,64:134:99:1347,0,1719 11 71152461 rs949177 A G 4821.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4850,480,0 11 71155153 rs1790334 A G 5349.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5378,542,0 11 71155171 rs1044482 C T 1949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.46;SOR=0.637 GT:AD:DP:GQ:PL 0/1:101,86:187:99:1978,0,2536 11 71169547 rs2276360 G C 2357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.165;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=1.208;SOR=0.784 GT:AD:DP:GQ:PL 0/1:84,103:187:99:2386,0,1850 11 71183477 rs2282620 C T 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.36;ReadPosRankSum=-1.002;SOR=0.633 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,47:96:99:0|1:71183474_C_T:1599,0,2754 11 71184678 rs7950441 A C 4841.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4870,515,0 11 71185479 rs2276354 T C 6415.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6444,620,0 11 71185518 rs2186778 T C 5997.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6026,576,0 11 71189436 rs2276353 T C 3162.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3191,317,0 11 71238453 rs147685834 G C 7290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.741;ClippingRankSum=0;DB;DP=547;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.5;MQ=59.35;MQRankSum=1.144;QD=13.33;ReadPosRankSum=-5.555;SOR=0.52 GT:AD:DP:GQ:PL 0/1:256,291:547:99:7319,0,6476 11 71238512 . AGCTGTGGCTCCTGTGGGGGCTCCAAGGGAG A 3062.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.345;ClippingRankSum=0;DP=449;ExcessHet=3.0103;FS=6.765;MLEAC=1;MLEAF=0.5;MQ=59.1;MQRankSum=-0.143;QD=10.35;ReadPosRankSum=-5.639;SOR=1.079 GT:AD:DP:GQ:PL 0/1:201,95:296:99:3100,0,7903 11 71238675 rs11270450 C CCTGCTGCCAGTCCAGCTGCTGTAAGCCCTG,CCTGCTGCCAGTCCAGCTGCTGTAAGCCCTGCTGCTGCCAGTCCAGCTGCTGTAAGCCCTG 9988.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.658;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=4.583;MLEAC=1,1;MLEAF=0.5,0.5;MQ=54.65;MQRankSum=-8.781;QD=56.43;ReadPosRankSum=2.598;SOR=1.035 GT:AD:DP:GQ:PL 1/2:115,41,21:177:99:10026,2085,2105,1519,0,1560 11 71249125 rs55848980 A AGGCTGTGGCTCCGGCTGTGGG 3525.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=6.46;MLEAC=1;MLEAF=0.5;MQ=58.36;MQRankSum=-4.723;QD=9.77;ReadPosRankSum=-0.519;SOR=1.05 GT:AD:DP:GQ:PL 0/1:267,94:361:99:3563,0,12797 11 71249183 rs55921335 T C 3808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=462;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.5;MQ=57.87;MQRankSum=-10.013;QD=8.24;ReadPosRankSum=-0.261;SOR=0.861 GT:AD:DP:GQ:PL 0/1:293,169:462:99:3837,0,7741 11 71249386 rs7101792 T C 16548.8 PASS AC=2;AF=1;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.58;QD=34.77;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,476:476:99:16577,1428,0 11 71276632 rs36164574 T C 3834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.731;ClippingRankSum=0;DB;DP=440;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60.53;MQRankSum=5.065;QD=8.82;ReadPosRankSum=3.749;SOR=0.766 GT:AD:DP:GQ:PL 0/1:273,162:435:99:3863,0,6906 11 71276657 rs200855172 A AGGCTGTGGCTCCGGCTGTGGG 94.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.602;ClippingRankSum=0;DB;DP=462;ExcessHet=3.0103;FS=17.569;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-9.117;QD=0.29;ReadPosRankSum=1.359;SOR=1.897 GT:AD:DP:GQ:PL 0/1:287,43:330:99:132,0,11721 11 71276831 rs71473841 C G 4431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.422;ClippingRankSum=0;DB;DP=424;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.5;MQ=57.66;MQRankSum=-3.409;QD=10.53;ReadPosRankSum=0.647;SOR=0.491 GT:AD:DP:GQ:PL 0/1:235,186:421:99:4460,0,6619 11 71276909 rs71272260 G GGGCTGTGGCTCCTGTGGGGGCTCCAAGGGA 595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.054;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=4.486;MLEAC=1;MLEAF=0.5;MQ=56.89;MQRankSum=-0.357;QD=6.69;ReadPosRankSum=3.918;SOR=2.012 GT:AD:DP:GQ:PL 0/1:78,11:89:99:624,0,1630 11 71507232 rs113587125 C G 852.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DB;DP=411;ExcessHet=3.0103;FS=4.751;MLEAC=1;MLEAF=0.5;MQ=57.75;MQRankSum=-16.852;QD=2.07;ReadPosRankSum=0.863;SOR=0.381 GT:AD:DP:GQ:PL 0/1:338,73:411:99:881,0,9257 11 71527881 rs117799093 G T 4670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.417;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=1.083;QD=12.94;ReadPosRankSum=-1.144;SOR=0.606 GT:AD:DP:GQ:PL 0/1:173,188:361:99:4699,0,4825 11 71548602 . G A 2488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.717;ClippingRankSum=0;DP=217;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.5;MQ=59.5;MQRankSum=0.091;QD=11.47;ReadPosRankSum=1.001;SOR=0.855 GT:AD:DP:GQ:PL 0/1:117,100:217:99:2517,0,2952 11 71668305 rs61749189 A G 587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=1.473;SOR=0.481 GT:AD:DP:GQ:PL 0/1:23,30:53:99:616,0,499 11 71718315 rs61744204 C T 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=6.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=2.135;SOR=0.395 GT:AD:DP:GQ:PL 0/1:117,99:216:99:2286,0,3003 11 71734211 rs2298457 T C 2533.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2562,254,0 11 71819718 rs61741195 G A 1838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.192;SOR=0.723 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1867,0,1977 11 71850156 rs139130389 C CTA 3672.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.406;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=5.169;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.036;QD=18.83;ReadPosRankSum=1.591;SOR=1.045 GT:AD:DP:GQ:PL 0/1:100,95:195:99:3710,0,3919 11 71932120 rs2508202 G C 2514.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.98;SOR=4.294 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2543,216,0 11 71939905 rs56353029 C G 2294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.525;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=-0.852;SOR=0.629 GT:AD:DP:GQ:PL 0/1:85,79:164:99:2323,0,2245 11 71941212 rs2276048 A G 2854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.685;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-1.482;SOR=0.804 GT:AD:DP:GQ:PL 0/1:120,114:234:99:2883,0,2987 11 71945332 rs61736312 A G 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.912;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.237;SOR=1.041 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1210,0,1081 11 71946333 rs2276046 T C 2088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.352;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.351;SOR=0.682 GT:AD:DP:GQ:PL 0/1:99,85:184:99:2117,0,2558 11 71948536 rs11548491 C G 3067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.5;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.551;SOR=0.681 GT:AD:DP:GQ:PL 0/1:136,123:259:99:3096,0,3837 11 72040784 rs36049191 T C 1488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.265;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=-0.648;SOR=0.942 GT:AD:DP:GQ:PL 0/1:41,62:103:99:1517,0,918 11 72288650 rs3842266 TG T 2114.73 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=30.65;SOR=1.785 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2152,206,0 11 72291927 rs577536 T C 2970.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2999,282,0 11 72293602 rs4944557 A G 2952.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2981,309,0 11 72295906 rs452228 A G 4447.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4476,429,0 11 72408657 rs2291289 C T 1818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.58;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=1.343;SOR=0.731 GT:AD:DP:GQ:PL 0/1:96,78:174:99:1847,0,2707 11 72412675 rs11235574 A G 2819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.613;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=6.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.617;SOR=1.085 GT:AD:DP:GQ:PL 0/1:121,113:234:99:2848,0,2852 11 72532708 rs11235603 C T 9097.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9126,881,0 11 72552645 rs75772023 C T 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.256;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.59;SOR=0.702 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1601,0,1715 11 72945341 rs2511241 C T 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.163;SOR=0.606 GT:AD:DP:GQ:PL 0/1:102,81:183:99:1983,0,2599 11 73020058 rs12272360 C T 3129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=2.298;SOR=0.618 GT:AD:DP:GQ:PL 0/1:152,130:282:99:3158,0,3977 11 73020375 rs10682858 G GCTC 4073.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=3.101;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=2.306;QD=19.4;ReadPosRankSum=-0.733;SOR=0.534 GT:AD:DP:GQ:PL 0/1:107,103:210:99:4111,0,4436 11 73076590 rs61749197 C T 2312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.973;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.214;SOR=0.766 GT:AD:DP:GQ:PL 0/1:109,92:201:99:2341,0,2780 11 73100232 rs11826896 C T 388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.7;ReadPosRankSum=-2.513;SOR=0.588 GT:AD:DP:GQ:PL 0/1:34,24:58:99:417,0,870 11 73120653 rs10793060 A G 2822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.372;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.573;SOR=0.673 GT:AD:DP:GQ:PL 0/1:114,115:229:99:2851,0,2587 11 73390772 rs71469461 GAA G 3241.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.015;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60.57;MQRankSum=2.935;QD=19.53;ReadPosRankSum=2.478;SOR=0.762 GT:AD:DP:GQ:PL 0/1:79,87:166:99:3279,0,2945 11 73611478 rs2067913 C G 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=1.145;SOR=0.704 GT:AD:DP:GQ:PL 0/1:61,72:133:99:1828,0,1584 11 73620537 rs3741138 C G 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=1.027;SOR=0.666 GT:AD:DP:GQ:PL 0/1:115,83:198:99:1727,0,2660 11 73670645 rs653263 T C 2389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.267;SOR=0.994 GT:AD:DP:GQ:PL 0/1:98,104:202:99:2418,0,2405 11 73744862 rs150676400 G A 1670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.056;SOR=0.53 GT:AD:DP:GQ:PL 0/1:76,73:149:99:1699,0,1960 11 73753268 rs35449717 CA C 449.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=3.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.33;ReadPosRankSum=-1.042;SOR=1.118 GT:AD:DP:GQ:PL 0/1:42,29:96:99:487,0,688 11 74047683 rs1044782 A G 2184.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.66;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2213,237,0 11 74049569 rs3867270 A G 4348.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4377,463,0 11 74053547 rs592644 C T 3418.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=30.52;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3447,335,0 11 74204269 rs10736798 T G 2290.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.79;QD=33.2;SOR=2.015 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2319,207,0 11 74204591 rs60455691 G A 2526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.834;SOR=0.839 GT:AD:DP:GQ:PL 0/1:118,108:226:99:2555,0,2900 11 74204727 rs4944895 A G 4738.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.68;SOR=1.514 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4767,435,0 11 74329615 rs4944052 T C 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=6.164;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.14;ReadPosRankSum=1.805;SOR=0.269 GT:AD:DP:GQ:PL 0/1:35,48:83:99:1202,0,936 11 74419357 rs1944937 C T 3674.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3703,386,0 11 74419378 rs7948433 C T 1128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=4.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=0.751;SOR=0.783 GT:AD:DP:GQ:PL 0/1:88,55:143:99:1157,0,2147 11 74559446 rs4944960 G C 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-2.703;SOR=0.7 GT:AD:DP:GQ:PL 0/1:101,82:183:99:1977,0,2642 11 74559481 rs4944961 C T 1746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.757;SOR=0.607 GT:AD:DP:GQ:PL 0/1:101,73:174:99:1775,0,2556 11 74563077 rs2304683 G A 1368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=5.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-1.196;SOR=0.858 GT:AD:DP:GQ:PL 0/1:60,60:120:99:1397,0,1549 11 74641436 . GA G 82.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.504;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.84;ReadPosRankSum=-1.307;SOR=0.693 GT:AD:DP:GQ:PL 0/1:36,9:53:99:120,0,828 11 74676794 rs514534 G C 2570.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=1.581 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2599,243,0 11 74705696 rs544115 T C 5376.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5405,510,0 11 74800138 rs117824389 G A 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.796;SOR=0.673 GT:AD:DP:GQ:PL 0/1:97,110:207:99:2794,0,2527 11 74904362 rs1621378 T C 5302.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5331,500,0 11 74994352 rs877711 G A 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.191;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=0.103;SOR=0.868 GT:AD:DP:GQ:PL 0/1:123,82:205:99:1934,0,3080 11 75141630 rs11236430 T C 6256.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.087 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6285,623,0 11 75152243 rs571353 C T 5590.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5619,594,0 11 75160183 rs61897374 C T 1240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.447;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=3.417;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=1.118;SOR=1.022 GT:AD:DP:GQ:PL 0/1:78,49:127:99:1269,0,1953 11 75160575 rs518611 G A 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=0.934;SOR=0.779 GT:AD:DP:GQ:PL 0/1:88,64:152:99:1451,0,2169 11 75277628 rs584961 A G 7713.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7742,714,0 11 75277992 rs651581 C T 6557.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=29.41;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6586,666,0 11 75378674 rs12225010 A C 2828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.985;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.543;SOR=0.738 GT:AD:DP:GQ:PL 0/1:132,112:244:99:2857,0,3262 11 75428958 rs554202 A G 1408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.443;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=1.111;SOR=0.588 GT:AD:DP:GQ:PL 0/1:72,55:127:99:1437,0,1913 11 75905800 rs1533767 G A 3552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=1.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=1.107;SOR=0.798 GT:AD:DP:GQ:PL 0/1:204,155:359:99:3581,0,5170 11 76227182 rs2508740 G A 540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.29;ReadPosRankSum=-1.977;SOR=0.691 GT:AD:DP:GQ:PL 0/1:59,27:86:99:569,0,1668 11 76257215 rs3753051 T C 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.251;SOR=0.628 GT:AD:DP:GQ:PL 0/1:93,98:191:99:2388,0,2241 11 76370792 rs4304809 A G 5932.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5961,588,0 11 76372052 rs3740779 A G 2014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.322;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-2.182;SOR=0.751 GT:AD:DP:GQ:PL 0/1:83,73:156:99:2043,0,2117 11 76372418 rs3740778 T C 2122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.83;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.016;SOR=0.896 GT:AD:DP:GQ:PL 0/1:82,84:166:99:2151,0,1956 11 76372564 rs10751259 T C 1488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.054;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=9.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=0.048;SOR=0.245 GT:AD:DP:GQ:PL 0/1:42,64:106:99:1517,0,839 11 76507692 rs1149621 T A 6158.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6187,639,0 11 76637651 rs4379869 G A 3086.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3115,329,0 11 76637680 rs4479014 G A 2941.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.5;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2970,331,0 11 76637730 rs4604914 C G 2389.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2418,251,0 11 76687399 rs1517909 A C 1074.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.56;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1103,117,0 11 76701606 rs3740767 G A 1372.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1401,145,0 11 76751166 rs73493606 G A 4113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-3.005;SOR=0.551 GT:AD:DP:GQ:PL 0/1:192,169:361:99:4142,0,5016 11 76751541 rs11292198 CT C 15899.7 PASS AC=2;AF=1;AN=2;DB;DP=434;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.24;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,427:427:99:15937,1285,0 11 76751584 rs11292199 CT C 12041.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=2.254;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.69;ReadPosRankSum=0.691;SOR=0.622 GT:AD:DP:GQ:PL 1/1:3,377:380:99:12079,1047,0 11 76751603 rs11292200 CT C 16957.7 PASS AC=2;AF=1;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.03;QD=44.05;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,385:385:99:16995,1162,0 11 76799004 rs7121748 T C 6104.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6133,615,0 11 76853783 rs1052030 T C 2050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.188;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-1.017;SOR=0.535 GT:AD:DP:GQ:PL 0/1:85,88:173:99:2079,0,1965 11 76868372 rs762667 T C 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.892;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.165;SOR=0.61 GT:AD:DP:GQ:PL 0/1:63,69:132:99:1772,0,1479 11 76873910 . C G 1783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.955;ClippingRankSum=0;DP=168;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-1.629;SOR=0.792 GT:AD:DP:GQ:PL 0/1:96,72:168:99:1812,0,2318 11 76918322 rs2276291 T C 2198.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2227,222,0 11 76919468 rs1320703 A T 3215.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.29;SOR=1.451 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,71:71:99:1|1:76919468_A_T:3244,220,0 11 76919478 rs948962 C A 3594.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.8;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,86:86:99:1|1:76919468_A_T:3623,259,0 11 76919865 rs1320702 T A 3266.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.68;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3295,353,0 11 76922868 rs41298757 C T 1162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.38;ReadPosRankSum=0.512;SOR=0.546 GT:AD:DP:GQ:PL 0/1:26,45:71:99:1191,0,638 11 76922946 rs11237123 G A 1406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.943;SOR=0.751 GT:AD:DP:GQ:PL 0/1:56,63:119:99:1435,0,1325 11 76925040 rs883224 G A 3380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-1.446;SOR=0.89 GT:AD:DP:GQ:PL 0/1:115,145:260:99:3409,0,2715 11 76954898 rs7104577 A G 2232.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2261,228,0 11 77051820 rs51500 C T 253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=-1.909;SOR=0.743 GT:AD:DP:GQ:PL 0/1:17,12:29:99:282,0,465 11 77412646 rs72947646 G A 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.143;SOR=0.523 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1669,0,1733 11 77553638 rs585721 T C 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.386;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=4.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=1.446;SOR=0.952 GT:AD:DP:GQ:PL 0/1:83,72:155:99:1789,0,1964 11 77635882 rs7119720 A C 986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.767;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=4.05;MLEAC=1;MLEAF=0.5;MQ=50.38;MQRankSum=-1.662;QD=17.62;ReadPosRankSum=0.239;SOR=0.293 GT:AD:DP:GQ:PL 0/1:19,37:56:99:1015,0,399 11 77639466 rs11607043 A G 593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.956;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=49.72;MQRankSum=-3.358;QD=8.61;ReadPosRankSum=-2.788;SOR=0.824 GT:AD:DP:GQ:PL 0/1:45,24:69:99:622,0,1154 11 77639511 rs11607479 T A 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.183;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.75;MQRankSum=-3.345;QD=9.19;ReadPosRankSum=-0.767;SOR=0.735 GT:AD:DP:GQ:PL 0/1:42,25:67:99:644,0,1067 11 77672189 rs11370501 T TA,TAA 1007.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=13.2;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=-0.151;SOR=0.326 GT:AD:DP:GQ:PL 1/2:11,31,24:71:99:1045,274,331,358,0,595 11 77734209 rs11237362 T C 3787.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.94;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3816,345,0 11 77790653 rs534418 T C 10288.8 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,318:318:99:10317,954,0 11 77811990 rs1263505 T C 904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=1.316;SOR=0.793 GT:AD:DP:GQ:PL 0/1:25,37:62:99:933,0,530 11 77813997 rs35218171 CA C 206.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.44;ReadPosRankSum=-0.329;SOR=0.7 GT:AD:DP:GQ:PL 0/1:21,17:44:99:244,0,408 11 77921527 rs2512526 G C 10064.8 PASS AC=2;AF=1;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.891 GT:AD:DP:GQ:PL 1/1:0,330:330:99:10093,989,0 11 78277277 rs10751296 A G 4173.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4202,417,0 11 78279790 rs10501429 T G 2725.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=1.584 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2754,277,0 11 78372536 rs2277277 G A 2777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.027;SOR=0.784 GT:AD:DP:GQ:PL 0/1:133,125:258:99:2806,0,3136 11 78449583 rs76283314 G A 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.427;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-1.871;SOR=0.887 GT:AD:DP:GQ:PL 0/1:75,80:155:99:1791,0,1908 11 78482113 rs34863597 G A 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.316;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-1.339;SOR=0.623 GT:AD:DP:GQ:PL 0/1:135,98:233:99:2175,0,3263 11 78516320 rs60286712 T TCTCCCCACCCTCCACACCCCACCCCTCATTCTTCCCCACCCCCACTCCTCCTCCACCCACCCTTC 1112.73 PASS AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=556.37;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:75:1150,75,0 11 78780837 rs61745036 G A 4674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.106;SOR=0.878 GT:AD:DP:GQ:PL 0/1:200,199:399:99:4703,0,4880 11 82443672 rs6592081 C G 4877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.059;ClippingRankSum=0;DB;DP=390;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=0.015;SOR=0.65 GT:AD:DP:GQ:PL 0/1:189,201:390:99:4906,0,4585 11 82443754 rs147683846 G A 5275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=357;ExcessHet=3.0103;FS=5.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=0.387;SOR=0.733 GT:AD:DP:GQ:PL 0/1:163,194:357:99:5304,0,4265 11 82443817 rs2291793 G A 4197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.846;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.8;SOR=0.66 GT:AD:DP:GQ:PL 0/1:152,168:320:99:4226,0,4065 11 82444021 rs66918959 T G 4291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-1.04;SOR=0.704 GT:AD:DP:GQ:PL 0/1:153,164:317:99:4320,0,3870 11 82444216 rs986097 C G 6462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.506;ClippingRankSum=0;DB;DP=389;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.74;ReadPosRankSum=0.474;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 0/1:210,176:386:99:0|1:82444216_C_G:6491,0,10732 11 82444226 rs986096 C A 6428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.256;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.79;ReadPosRankSum=1.82;SOR=0.74 GT:AD:DP:GQ:PGT:PID:PL 0/1:211,172:383:99:0|1:82444216_C_G:6457,0,10798 11 82535963 rs4759 C T 2043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.11;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=1.569;SOR=0.468 GT:AD:DP:GQ:PL 0/1:77,83:160:99:2072,0,1938 11 85418591 rs3069561 AACAG A 1033.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.372;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=4.417;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.99;ReadPosRankSum=0.28;SOR=1.488 GT:AD:DP:GQ:PL 0/1:20,27:47:99:1071,0,1114 11 85435730 rs550404 C T 2010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=0.266;SOR=0.641 GT:AD:DP:GQ:PL 0/1:70,84:154:99:2039,0,1753 11 85436352 rs641393 G A 1804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.61;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-0.439;SOR=0.891 GT:AD:DP:GQ:PL 0/1:112,78:190:99:1833,0,2842 11 85436394 rs556669 T C 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.568;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=6.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.067;SOR=0.899 GT:AD:DP:GQ:PL 0/1:108,78:186:99:1923,0,2623 11 85436500 rs580459 T C 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.485;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-1.011;SOR=0.89 GT:AD:DP:GQ:PL 0/1:93,84:177:99:2002,0,2273 11 85436699 rs598346 A G 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.284;SOR=0.76 GT:AD:DP:GQ:PL 0/1:78,85:163:99:2104,0,1918 11 85436868 rs597480 G C 2013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=0.527;SOR=0.794 GT:AD:DP:GQ:PL 0/1:63,77:140:99:2042,0,1725 11 85437896 rs491867 A G 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.52;SOR=0.691 GT:AD:DP:GQ:PL 0/1:65,69:134:99:1777,0,1638 11 85447611 rs680498 T C 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.718;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=5.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-2.382;SOR=1.254 GT:AD:DP:GQ:PL 0/1:39,45:84:99:1188,0,847 11 85456703 rs647912 T C 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.378;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=3.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.949;SOR=0.953 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1708,0,1877 11 85630411 rs12805520 C T 977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-2.301;SOR=0.773 GT:AD:DP:GQ:PL 0/1:61,45:106:99:1006,0,1460 11 85692181 rs76719109 A C 578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.396;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.689;SOR=0.644 GT:AD:DP:GQ:PL 0/1:31,24:55:99:607,0,736 11 85725937 rs592297 C T 907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.273;SOR=0.627 GT:AD:DP:GQ:PL 0/1:38,41:79:99:936,0,919 11 85968623 rs974144 C T 863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.04;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=2.417;SOR=1.14 GT:AD:DP:GQ:PL 0/1:43,38:81:99:892,0,1021 11 85977117 rs10898460 G A 2514.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=1.854 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2543,243,0 11 86098680 rs292109 T C 914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.991;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.755;SOR=0.585 GT:AD:DP:GQ:PL 0/1:36,36:72:99:943,0,913 11 86111700 rs12272824 A T 1208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=0.991;SOR=0.594 GT:AD:DP:GQ:PL 0/1:33,51:84:99:1237,0,772 11 86123467 rs3741006 G A 575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.678;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.58;ReadPosRankSum=1.271;SOR=0.586 GT:AD:DP:GQ:PL 0/1:49,27:76:99:604,0,1258 11 86123556 rs3741005 A G 2029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.485;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.26;ReadPosRankSum=-0.735;SOR=0.706 GT:AD:DP:GQ:PL 0/1:54,79:133:99:2058,0,1193 11 86153911 rs7548 G A 988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.597;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.66;ReadPosRankSum=0.269;SOR=0.601 GT:AD:DP:GQ:PL 0/1:76,53:129:99:1017,0,1870 11 86161388 rs1042780 C G 1467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=1.682;SOR=0.732 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1496,0,1776 11 86267633 rs17211115 C T 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.174;SOR=0.742 GT:AD:DP:GQ:PL 0/1:120,98:218:99:2062,0,2764 11 86267678 rs4943943 G A 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.93;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.988;SOR=0.626 GT:AD:DP:GQ:PL 0/1:79,83:162:99:1977,0,1929 11 86267714 rs12287767 C A 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=2.357;SOR=0.899 GT:AD:DP:GQ:PL 0/1:57,67:124:99:1628,0,1447 11 87013438 rs2276102 G A 4041.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4070,402,0 11 87908448 rs302646 A G 4071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.48;ReadPosRankSum=-0.164;SOR=0.81 GT:AD:DP:GQ:PL 0/1:111,152:263:99:4100,0,2602 11 88045583 rs217086 A G 4594.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4623,456,0 11 88242024 rs2941563 T G 6663.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6692,653,0 11 88300817 rs55933882 C T 1383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.507;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.231;SOR=0.621 GT:AD:DP:GQ:PL 0/1:68,61:129:99:1412,0,1859 11 89017961 rs1126809 G A 1325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.31;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=5.298;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0.829;QD=9.61;ReadPosRankSum=-0.865;SOR=1.135 GT:AD:DP:GQ:PL 0/1:83,55:138:99:1354,0,2073 11 89133449 rs317139 C T 3515.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.29;QD=28.58;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3544,369,0 11 89223616 rs490934 C G 2264.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2293,232,0 11 89443808 rs11018745 A C 4088.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.1;QD=32.97;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4117,371,0 11 89447375 rs17221124 C T 332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.081;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-0.756;QD=5.2;ReadPosRankSum=0.703;SOR=1.059 GT:AD:DP:GQ:PL 0/1:47,17:64:99:361,0,1218 11 89451057 rs3881253 A G 4118.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.72;QD=42.03;SOR=1.122 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,98:98:99:1|1:89451057_A_G:4147,295,0 11 89531540 rs12417980 C T 10892.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.129;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=9.985;MLEAC=2;MLEAF=1;MQ=57.54;MQRankSum=8.327;QD=29.28;ReadPosRankSum=4.047;SOR=0.147 GT:AD:DP:GQ:PL 1/1:14,358:372:99:10921,553,0 11 89531619 rs11824402 A G 97.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0;DB;DP=479;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.54;MQRankSum=-7.516;QD=0.2;ReadPosRankSum=3.968;SOR=0.677 GT:AD:DP:GQ:PL 0/1:419,60:479:99:126,0,10429 11 89531801 . CA C 129.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.539;ClippingRankSum=0;DP=198;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=52.8;MQRankSum=-7.208;QD=0.85;ReadPosRankSum=-1.229;SOR=0.62 GT:AD:DP:GQ:PL 0/1:128,24:179:99:158,0,2807 11 89534159 . G GA 40.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.69;MQRankSum=-0.06;QD=1.04;ReadPosRankSum=-0.638;SOR=0.603 GT:AD:DP:GQ:PL 0/1:31,8:41:78:78,0,621 11 89609198 rs369387491 TA T 118.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.241;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.06;MQRankSum=0.586;QD=2.12;ReadPosRankSum=-0.632;SOR=0.307 GT:AD:DP:GQ:PL 0/1:44,12:70:99:156,0,1004 11 89774197 . CTTT C,CTT 1496.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.459;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=1.429;MLEAC=1,1;MLEAF=0.5,0.5;MQ=45.42;MQRankSum=-4.912;QD=20.23;ReadPosRankSum=-0.854;SOR=1.147 GT:AD:DP:GQ:PL 1/2:9,20,45:87:99:1534,822,1535,526,0,483 11 89774236 rs74584169 C G 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.61;MQRankSum=-6.423;QD=6.98;ReadPosRankSum=-1.398;SOR=0.688 GT:AD:DP:GQ:PL 0/1:90,55:145:99:1041,0,2087 11 89774397 rs150273819 T C 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.56;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.5;MQ=45.37;MQRankSum=-7.892;QD=4.69;ReadPosRankSum=-5.819;SOR=0.793 GT:AD:DP:GQ:PL 0/1:194,69:263:99:1263,0,4935 11 89774448 rs77759231 G A 1325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.016;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=3.095;MLEAC=1;MLEAF=0.5;MQ=50.11;MQRankSum=-9.799;QD=5;ReadPosRankSum=2.572;SOR=0.789 GT:AD:DP:GQ:PL 0/1:194,71:265:99:1354,0,5118 11 89819885 rs201853154 A T 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=10.868;MLEAC=1;MLEAF=0.5;MQ=43.86;MQRankSum=-6.712;QD=7.8;ReadPosRankSum=-1.521;SOR=1.576 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,28:114:99:0|1:89819885_A_T:917,0,4461 11 89819888 . C CT 879.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.694;ClippingRankSum=0;DP=115;ExcessHet=3.0103;FS=10.868;MLEAC=1;MLEAF=0.5;MQ=43.86;MQRankSum=-6.712;QD=7.72;ReadPosRankSum=-1.175;SOR=1.576 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,28:114:99:0|1:89819885_A_T:917,0,4461 11 89868755 rs10734123 G A 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=0.017;SOR=0.835 GT:AD:DP:GQ:PL 0/1:75,62:137:99:1339,0,1754 11 89902154 rs10830430 A G 909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.294;SOR=0.446 GT:AD:DP:GQ:PL 0/1:54,44:98:99:938,0,1240 11 89916080 rs9804632 G C 1038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=2.598;SOR=0.8 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1067,0,1167 11 89935586 rs1045861 G T 1286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.048;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-1.638;QD=12.62;ReadPosRankSum=2.141;SOR=0.6 GT:AD:DP:GQ:PL 0/1:48,54:102:99:1315,0,1048 11 89938615 rs36109540 AAG A 1242.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.82;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.28;ReadPosRankSum=0.497;SOR=0.501 GT:AD:DP:GQ:PL 0/1:35,33:68:99:1280,0,1388 11 89939448 rs1943381 G A 294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.56;ReadPosRankSum=0.978;SOR=0.339 GT:AD:DP:GQ:PL 0/1:24,15:39:99:323,0,640 11 89951367 rs34787918 GA G 429.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.385;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=3.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.14;ReadPosRankSum=1.581;SOR=1.125 GT:AD:DP:GQ:PL 0/1:42,28:77:99:467,0,962 11 92531356 rs7949157 A G 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.314;SOR=0.707 GT:AD:DP:GQ:PL 0/1:108,96:204:99:2275,0,2662 11 92532677 rs12362722 T C 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.804;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.299;SOR=0.635 GT:AD:DP:GQ:PL 0/1:121,90:211:99:2204,0,2968 11 92534442 rs3847531 A G 3003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.265;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.65;ReadPosRankSum=0.334;SOR=0.699 GT:AD:DP:GQ:PL 0/1:85,120:205:99:3032,0,1949 11 92573911 rs10765565 G T 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.848;QD=10.05;ReadPosRankSum=-0.871;SOR=0.834 GT:AD:DP:GQ:PL 0/1:107,79:186:99:1897,0,2786 11 92590448 rs4753069 A G 2906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=1.273;SOR=0.693 GT:AD:DP:GQ:PL 0/1:131,133:264:99:2935,0,3057 11 92599987 rs76965380 C T 3030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=0.074;SOR=0.593 GT:AD:DP:GQ:PL 0/1:98,115:213:99:3059,0,2565 11 92702962 rs8192552 G A 4144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.65;ReadPosRankSum=1.627;SOR=0.616 GT:AD:DP:GQ:PL 0/1:117,166:283:99:4173,0,2763 11 93129483 rs12288277 G C 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.445;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.19;ReadPosRankSum=0.483;SOR=0.563 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,31:69:99:0|1:93129483_G_C:1214,0,1884 11 93129484 rs12282288 A G 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.614;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.7;ReadPosRankSum=0.133;SOR=0.574 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,32:71:99:0|1:93129483_G_C:1214,0,1884 11 93141580 rs2259633 C A 2041.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=1.539 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2070,195,0 11 93212161 rs2605594 A G 3901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.603;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=9.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.953;SOR=0.385 GT:AD:DP:GQ:PL 0/1:151,169:320:99:3930,0,2899 11 93212254 rs2658797 C T 3023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.364;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-1.221;SOR=0.608 GT:AD:DP:GQ:PL 0/1:152,128:280:99:3052,0,4124 11 93400796 rs67112133 C T 232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.95;ReadPosRankSum=-0.529;SOR=1.379 GT:AD:DP:GQ:PL 0/1:47,12:59:99:261,0,1239 11 93402006 rs61743303 A G 345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.52;ReadPosRankSum=-1.263;SOR=0.704 GT:AD:DP:GQ:PL 0/1:33,20:53:99:374,0,800 11 93402096 rs1944101 C A 1231.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1260,126,0 11 93408831 rs10831088 G A 1859.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1888,195,0 11 93425159 rs4753495 C A 1789.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1818,189,0 11 93460160 rs67879380 A C 1035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.686;SOR=0.667 GT:AD:DP:GQ:PL 0/1:37,46:83:99:1064,0,820 11 93462607 rs7131178 A T 599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8;ReadPosRankSum=0.822;SOR=0.899 GT:AD:DP:GQ:PL 0/1:48,27:75:99:628,0,1191 11 93463145 rs200136546 A AT 107.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.39;ReadPosRankSum=-0.801;SOR=0.744 GT:AD:DP:GQ:PL 0/1:32,13:54:99:145,0,645 11 93463332 rs7101779 A G 4111.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4140,437,0 11 93517874 rs7116967 C G 11071.8 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.94;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,252:252:99:1|1:93517874_C_G:11100,767,0 11 93517886 rs2848477 G C 11061.8 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.07;SOR=0.801 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,251:251:99:1|1:93517874_C_G:11090,767,0 11 93527219 rs657177 T C 1784.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=28.79;SOR=1.234 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1813,185,0 11 93534990 rs655699 G A 1977.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2006,204,0 11 93797619 rs1945783 A G 2719.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2748,273,0 11 93803717 rs1878799 C G 3328.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.63;SOR=1.314 GT:AD:DP:GQ:PL 1/1:0,102:104:99:3357,306,0 11 93862493 rs1138800 A C 3501.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.322 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3530,345,0 11 94197260 rs641936 A G 2211.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.65;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2240,236,0 11 94212048 rs535801 C T 1511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.84;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.003;SOR=0.535 GT:AD:DP:GQ:PL 0/1:64,67:131:99:1540,0,1551 11 94225807 rs496797 C T 1056.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.02;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1085,99,0 11 94230119 . TA T 67.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=2.639;QD=0.42;ReadPosRankSum=-0.716;SOR=0.643 GT:AD:DP:GQ:PL 0/1:134,26:173:99:105,0,3386 11 94699507 rs34805065 A AT 2826.73 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.71;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2864,232,0 11 94759059 rs10752685 A G 4488.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.25;QD=29.93;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4517,449,0 11 94800902 rs5793709 G GC 8203.73 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.46;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,219:219:99:8241,662,0 11 94862577 rs3740861 G T 4961.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4990,501,0 11 94908658 rs11021065 G T 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.258;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.252;SOR=1.026 GT:AD:DP:GQ:PL 0/1:56,43:99:99:1022,0,1316 11 95512060 rs1150360 A G 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.021;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.06;ReadPosRankSum=0.685;SOR=0.531 GT:AD:DP:GQ:PL 0/1:55,69:124:99:1772,0,1264 11 95521648 rs1727165 A G 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.699;SOR=0.598 GT:AD:DP:GQ:PL 0/1:38,36:74:99:785,0,786 11 95528714 rs522536 C T 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.129;SOR=0.525 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1141,0,854 11 95564259 rs644799 A G 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=1.399;SOR=0.577 GT:AD:DP:GQ:PL 0/1:55,47:102:99:1059,0,1413 11 95580926 rs566204 G A 1188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-1.639;SOR=0.814 GT:AD:DP:GQ:PL 0/1:57,52:109:99:1217,0,1424 11 95657111 rs3824874 T G 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.919;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.607;SOR=0.666 GT:AD:DP:GQ:PL 0/1:94,84:178:99:2158,0,2260 11 95825374 . TTGCTGCTGCTGC T,TTGC 2719.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.933;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=2.095;MLEAC=1,1;MLEAF=0.5,0.5;MQ=62.36;MQRankSum=1.112;QD=28.04;ReadPosRankSum=-1.92;SOR=0.425 GT:AD:DP:GQ:PL 1/2:3,10,84:99:99:2757,2498,3443,304,0,151 11 95825797 rs7931870 A G 3077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.439;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=4.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-2.961;SOR=0.486 GT:AD:DP:GQ:PL 0/1:126,113:239:99:3106,0,3335 11 99690286 rs10790978 T G 1266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.348;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=5.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=0.994;SOR=1.289 GT:AD:DP:GQ:PL 0/1:55,46:101:99:1295,0,1334 11 99690376 rs12292659 C T 578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.758;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.8;ReadPosRankSum=-0.909;SOR=1.035 GT:AD:DP:GQ:PL 0/1:168,39:207:99:607,0,4114 11 99690428 rs7125822 T G 2716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.906;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=0.043;SOR=0.571 GT:AD:DP:GQ:PL 0/1:106,109:215:99:2745,0,2327 11 99690461 rs10893933 A G 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.973;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.7;ReadPosRankSum=-1.437;SOR=0.978 GT:AD:DP:GQ:PL 0/1:134,48:182:99:1065,0,3558 11 100814570 rs543146 A G 998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.28;SOR=0.695 GT:AD:DP:GQ:PL 0/1:43,45:88:99:1027,0,958 11 100814609 rs618155 G T 1725.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.39;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1754,189,0 11 100820663 rs17647207 G A 331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=4.175;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.06;ReadPosRankSum=1.113;SOR=0.701 GT:AD:DP:GQ:PL 0/1:29,18:47:99:360,0,795 11 100830693 rs563460 T C 3130.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.056 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3159,321,0 11 100846936 rs654593 A G 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.732;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=5.671;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.333;QD=13.35;ReadPosRankSum=-0.937;SOR=0.84 GT:AD:DP:GQ:PL 0/1:100,112:212:99:2859,0,2308 11 100847050 rs569270 A G 2585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.625;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.164;SOR=0.736 GT:AD:DP:GQ:PL 0/1:134,111:245:99:2614,0,3204 11 100847069 rs569336 G A 2450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.828;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.219;SOR=0.93 GT:AD:DP:GQ:PL 0/1:136,109:245:99:2479,0,3157 11 100863096 rs515552 A G 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.119;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=-0.431;SOR=0.692 GT:AD:DP:GQ:PL 0/1:68,86:154:99:2275,0,1516 11 100863354 rs471933 C A 2115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.017;SOR=0.765 GT:AD:DP:GQ:PL 0/1:110,93:203:99:2144,0,2853 11 100998623 rs1379130 G A 2451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.162;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.422;SOR=0.631 GT:AD:DP:GQ:PL 0/1:94,105:199:99:2480,0,2126 11 101375549 rs10501986 T C 4870.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=31.63;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4899,461,0 11 101765632 . T C 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.238;SOR=0.401 GT:AD:DP:GQ:PL 0/1:62,74:136:99:1802,0,1635 11 101771248 rs3858418 G A 3076.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3105,317,0 11 101832478 rs7926728 G T 1590.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1619,159,0 11 101833644 rs7109233 C T 3259.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3288,318,0 11 101857758 rs6590942 G A 1774.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=1.278 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1803,173,0 11 101918327 rs12804542 A G 3667.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3696,354,0 11 102199608 rs60157696 TA T 171.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.52;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.19;ReadPosRankSum=1.815;SOR=0.814 GT:AD:DP:GQ:PL 0/1:30,11:44:99:209,0,1290 11 102199610 rs59068554 TA T 104.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.916;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.38;ReadPosRankSum=1.187;SOR=0.582 GT:AD:DP:GQ:PL 0/1:32,12:44:99:142,0,880 11 102207851 rs1055088 G A 725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.78;ReadPosRankSum=0.328;SOR=1.203 GT:AD:DP:GQ:PL 0/1:21,25:46:99:754,0,585 11 102465502 . CAAA C,CA 2136.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.584;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;MQRankSum=0.238;QD=29.68;ReadPosRankSum=1.251;SOR=0.756 GT:AD:DP:GQ:PL 1/2:3,16,53:97:99:2174,1063,1118,314,0,160 11 102477377 rs1784424 G T 4145.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4174,424,0 11 102477395 rs1784423 A G 4379.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4408,426,0 11 102495998 rs2245803 T G 5217.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5246,525,0 11 102562700 rs2509010 C T 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.143;SOR=0.65 GT:AD:DP:GQ:PL 0/1:51,70:121:99:1726,0,1217 11 102563739 rs1276289 C T 904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.852;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.744;SOR=0.65 GT:AD:DP:GQ:PL 0/1:40,39:79:99:933,0,891 11 102567207 rs1276286 T A 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=2.671;SOR=0.517 GT:AD:DP:GQ:PL 0/1:61,52:113:99:1166,0,1551 11 102576358 rs2846707 T C 2210.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2239,222,0 11 102576375 rs1939015 G A 2286.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2315,244,0 11 102584104 rs35866072 T G 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.777;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.981;SOR=0.842 GT:AD:DP:GQ:PL 0/1:55,44:99:99:1032,0,1305 11 102584207 rs33927742 A G 364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.245;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=-0.827;SOR=1.055 GT:AD:DP:GQ:PL 0/1:27,16:43:99:393,0,688 11 102584466 rs3832755 G GT 2093.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;MQRankSum=0.263;QD=27.19;ReadPosRankSum=-0.087;SOR=0.33 GT:AD:DP:GQ:PL 1/1:1,76:80:99:2131,215,0 11 102584607 rs2509013 T C 2306.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=29.2;SOR=1.281 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2335,237,0 11 102587154 rs58281905 G GAA 194.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.246;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=0.567;QD=38.95;ReadPosRankSum=1.087;SOR=0.61 GT:AD:DP:GQ:PL 0/1:1,4:16:99:128,0,120 11 102593248 rs1940475 T C 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.065;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=0.911;SOR=0.603 GT:AD:DP:GQ:PL 0/1:152,95:247:99:2093,0,3630 11 102593273 rs12803000 T G 3612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=-1.595;SOR=0.711 GT:AD:DP:GQ:PL 0/1:95,155:250:99:3641,0,2029 11 102595492 rs3765620 G A 4059.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4088,402,0 11 102595579 rs17099450 G C 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.23;SOR=0.934 GT:AD:DP:GQ:PL 0/1:84,81:165:99:1917,0,2017 11 102650389 rs17293607 C T 5569.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.458 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5598,543,0 11 102666316 rs470558 T C 3280.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3309,330,0 11 102668702 rs470358 T C 2418.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.8;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2447,260,0 11 102738793 rs5794199 G GT 5260.73 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=44.58;SOR=1.382 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:102738793_G_GT:5298,355,0 11 102738795 rs5003690 G T 5269.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.04;SOR=1.362 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,117:117:99:1|1:102738793_G_GT:5298,355,0 11 102815970 rs61571704 CA C 633.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.721;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;MQRankSum=0.349;QD=17.6;ReadPosRankSum=1.434;SOR=0.859 GT:AD:DP:GQ:PL 1/1:2,34:39:42:671,42,0 11 102991197 rs17301182 C T 998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.334;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=1.266;SOR=0.794 GT:AD:DP:GQ:PL 0/1:49,44:93:99:1027,0,1364 11 103026040 rs5794210 CT C 987.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.087;QD=10.97;ReadPosRankSum=0.209;SOR=0.534 GT:AD:DP:GQ:PL 0/1:37,53:102:99:1025,0,757 11 103027234 rs17301750 A G 1460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.247;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.195;SOR=0.64 GT:AD:DP:GQ:PL 0/1:61,57:118:99:1489,0,1401 11 103029516 rs688906 A G 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.302;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.687;SOR=0.587 GT:AD:DP:GQ:PL 0/1:44,43:87:99:1072,0,1095 11 103044038 rs11225578 A G 1073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=6.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.27;ReadPosRankSum=-2.287;SOR=1.548 GT:AD:DP:GQ:PL 0/1:25,41:66:99:1102,0,602 11 103047007 rs585692 C A 4137.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4166,426,0 11 103057048 rs658804 A G 2070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.427;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=2.325;SOR=0.474 GT:AD:DP:GQ:PL 0/1:78,85:163:99:2099,0,1924 11 103058126 rs586592 C T 2110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-1.232;SOR=0.806 GT:AD:DP:GQ:PL 0/1:94,93:187:99:2139,0,2402 11 103082558 rs17394217 A G 269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.93;ReadPosRankSum=0.759;SOR=0.773 GT:AD:DP:GQ:PL 0/1:22,12:34:99:298,0,591 11 103082590 rs589623 G A 710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=4.016;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=0.535;SOR=0.311 GT:AD:DP:GQ:PL 0/1:21,30:51:99:739,0,534 11 103123999 rs648387 G T 486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.445;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=5.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.47;ReadPosRankSum=-0.723;SOR=1.335 GT:AD:DP:GQ:PL 0/1:79,30:109:99:515,0,2113 11 103124135 rs11225634 T G 1610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.104;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=2.04;SOR=0.895 GT:AD:DP:GQ:PL 0/1:103,74:177:99:1639,0,2498 11 103152919 rs12574626 G A 717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.936;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=-0.777;SOR=0.549 GT:AD:DP:GQ:PL 0/1:45,33:78:99:746,0,1035 11 103158278 rs10895391 C T 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.156;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.594;SOR=0.783 GT:AD:DP:GQ:PL 0/1:54,77:131:99:1709,0,1240 11 103229027 rs2566913 T C 1348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.217;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=0.726;SOR=0.554 GT:AD:DP:GQ:PL 0/1:53,55:108:99:1377,0,1235 11 103270607 rs10895417 G A 1372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=0.621;SOR=0.604 GT:AD:DP:GQ:PL 0/1:40,60:100:99:1401,0,866 11 103780455 rs10791649 A G 4278.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4307,428,0 11 103818395 rs35045740 T C 1259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.343;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.65;ReadPosRankSum=-0.182;SOR=0.673 GT:AD:DP:GQ:PL 0/1:33,53:86:99:1288,0,633 11 103908735 rs1052313 G A 4879.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=1.752 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4908,462,0 11 104758035 rs484438 G A 1865.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.773 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1894,177,0 11 104761100 rs513131 T C 3342.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.287 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3371,324,0 11 104761206 rs647039 C T 3586.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3615,357,0 11 104763117 rs497116 G A 4470.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4499,480,0 11 104768000 rs693001 G A 2996.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3025,300,0 11 104768098 rs555367 T C 2957.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2986,294,0 11 104819327 rs9507 T C 4506.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4535,447,0 11 104866461 rs540819 A T 622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=-0.242;SOR=0.728 GT:AD:DP:GQ:PL 0/1:39,30:69:99:651,0,907 11 104869708 rs523104 G C 1357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.435;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.813;SOR=0.849 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1386,0,1414 11 105797641 rs12787449 A G 1031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=-1.579;SOR=0.622 GT:AD:DP:GQ:PL 0/1:25,44:69:99:1060,0,549 11 105923564 rs3737347 C T 677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.968;SOR=0.48 GT:AD:DP:GQ:PL 0/1:30,28:58:99:706,0,848 11 106807443 rs11331245 AT A 956.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=3.338;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.446;QD=17.72;ReadPosRankSum=0.144;SOR=0.311 GT:AD:DP:GQ:PL 0/1:8,46:59:38:994,0,38 11 107299631 rs659040 G A 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.65;SOR=0.652 GT:AD:DP:GQ:PL 0/1:67,51:118:99:1278,0,1729 11 107396158 rs12574614 T C 2485.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.71;SOR=1.704 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2514,227,0 11 107420530 rs645056 A G 2796.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2825,285,0 11 107431637 rs662349 C A 476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.54;ReadPosRankSum=0.028;SOR=0.859 GT:AD:DP:GQ:PL 0/1:58,28:86:99:505,0,1599 11 108043988 rs2070661 C T 2351.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2380,222,0 11 108093208 rs228589 A T 3434.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.48;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3463,372,0 11 108121410 rs34325032 C CT 915.19 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.427;QD=16.95;ReadPosRankSum=2.212;SOR=0.562 GT:AD:DP:GQ:PL 0/1:9,45:70:99:947,0,109 11 108150207 rs1799757 CT C 2546.73 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.91;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2584,208,0 11 108151707 rs3218681 T TA 1938.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,65:69:99:1967,214,0 11 108175462 rs1801516 G A 3290.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3319,344,0 11 108183167 rs659243 A G 2339.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2368,238,0 11 108380335 rs1943382 T C 3723.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.16;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3752,327,0 11 108464209 rs2640738 T C 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.285;SOR=0.95 GT:AD:DP:GQ:PL 0/1:58,59:117:99:1418,0,1499 11 110023628 rs665013 C T 3729.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3758,369,0 11 110128925 rs375520051 CA C 93.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.444;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=4.505;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.27;QD=2.4;ReadPosRankSum=0.441;SOR=0.264 GT:AD:DP:GQ:PL 0/1:27,12:45:99:131,0,596 11 110451885 rs10488765 A G 2193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.394;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.226;SOR=0.766 GT:AD:DP:GQ:PL 0/1:84,96:180:99:2222,0,1810 11 110582834 rs7112669 C A 4317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.773;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.99;ReadPosRankSum=-0.616;SOR=0.77 GT:AD:DP:GQ:PL 0/1:118,170:288:99:4346,0,2673 11 111368047 rs489078 G T 4740.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.927;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.59;ReadPosRankSum=1.715;SOR=0.234 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4769,455,0 11 111420364 rs634679 A G 5434.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5463,555,0 11 111741104 rs60312459 G GC 108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.79;ReadPosRankSum=-0.035;SOR=0.91 GT:AD:DP:GQ:PL 0/1:27,12:45:99:137,0,746 11 111741106 rs72994380 A C 42.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.93;ReadPosRankSum=-0.305;SOR=0.458 GT:AD:DP:GQ:PL 0/1:33,13:46:71:71,0,711 11 111742145 rs10708475 CG C 11700.7 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=40.21;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,291:291:99:11738,876,0 11 111747297 rs7124696 A G 4339.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4368,426,0 11 111749349 rs611010 A T 5947.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5976,620,0 11 111754574 rs1045282 A C 2718.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2747,281,0 11 111781047 rs11603779 A C 4360.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4389,414,0 11 111853106 rs11455434 G GC 5006.73 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=35.26;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:5044,427,0 11 111897028 rs113392665 GT G 150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=7.097;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=0.529;QD=2.51;ReadPosRankSum=0.031;SOR=1.325 GT:AD:DP:GQ:PL 0/1:43,17:84:99:179,0,1008 11 111963860 rs592626 A G 2498.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.16;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2527,275,0 11 112064431 rs7105056 T C 2693.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2722,285,0 11 112065434 rs10891338 T C 2834.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2863,297,0 11 112088499 rs2217401 A C 2677.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.994;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.43;ReadPosRankSum=-0.532;SOR=0.409 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2706,262,0 11 112123095 rs2564872 A G 3438.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3467,359,0 11 112832339 rs11284059 GC G 3112.73 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=45.11;SOR=0.844 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,69:69:99:1|1:112832339_GC_G:3150,211,0 11 112832353 rs7105734 T C 3346.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=44.62;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:112832339_GC_G:3375,226,0 11 112832358 rs6589347 T C 3256.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=44.61;SOR=0.72 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,73:73:99:1|1:112832339_GC_G:3285,220,0 11 112832405 rs73002342 T A 466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.271;QD=7.07;ReadPosRankSum=-0.684;SOR=0.6 GT:AD:DP:GQ:PL 0/1:40,26:66:99:495,0,986 11 113085244 rs686050 C G 4174.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4203,387,0 11 113103996 rs584427 T G 5457.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5486,534,0 11 113111501 rs2303377 T C 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-1.389;SOR=0.767 GT:AD:DP:GQ:PL 0/1:38,54:92:99:1209,0,797 11 113113515 rs635596 G A 3367.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.791 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3396,324,0 11 113196268 . A G 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.114;SOR=0.646 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1625,0,1773 11 113200709 rs2303380 G A 718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=1.8;SOR=0.623 GT:AD:DP:GQ:PL 0/1:41,37:78:99:747,0,896 11 113212553 rs6589372 T C 802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.144;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=1.388;SOR=0.502 GT:AD:DP:GQ:PL 0/1:25,33:58:99:831,0,586 11 113264272 rs17115439 T C 3466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.102;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=0.628;SOR=0.683 GT:AD:DP:GQ:PL 0/1:113,146:259:99:3495,0,2533 11 113264470 rs4938013 A C 3279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.054;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.755;SOR=0.777 GT:AD:DP:GQ:PL 0/1:145,136:281:99:3308,0,3298 11 113270374 rs2734848 C T 3508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=0.72;SOR=0.802 GT:AD:DP:GQ:PL 0/1:124,142:266:99:3537,0,3291 11 113618968 rs2513584 G C 2816.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=1.775 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2845,264,0 11 113670052 rs2459971 T A 5514.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5543,575,0 11 113679119 rs2465647 C T 5218.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5247,531,0 11 113848273 rs1985242 A T 1506.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1535,159,0 11 113856768 rs34327364 G A 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-1.744;SOR=0.775 GT:AD:DP:GQ:PL 0/1:71,63:134:99:1403,0,1775 11 114393652 rs10891692 C T 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-0.733;SOR=0.918 GT:AD:DP:GQ:PL 0/1:46,40:86:99:1002,0,1158 11 114398627 rs34542949 C CA 903.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=2.92;SOR=0.697 GT:AD:DP:GQ:PL 0/1:38,41:85:99:941,0,662 11 114400991 rs45609739 G C 1218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.391;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=-2.205;SOR=0.567 GT:AD:DP:GQ:PL 0/1:103,50:153:99:1247,0,2649 11 114401577 rs524911 T C 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.77;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=6.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.243;SOR=1.213 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1674,0,1755 11 114441943 rs10891705 G A 1729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.914;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.812;SOR=0.801 GT:AD:DP:GQ:PL 0/1:90,76:166:99:1758,0,2563 11 114442103 rs550897 A G 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.696;SOR=0.551 GT:AD:DP:GQ:PL 0/1:98,81:179:99:1940,0,2300 11 114568942 rs11215158 T C 2739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.689;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=6.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-1.855;SOR=1.159 GT:AD:DP:GQ:PL 0/1:97,106:203:99:2768,0,2394 11 114569054 rs1712838 A G 3177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.438;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-1.277;SOR=0.695 GT:AD:DP:GQ:PL 0/1:145,131:276:99:3206,0,3481 11 116662579 rs651821 C T 4870.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=1.625 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4899,447,0 11 116692334 rs5104 C T 5486.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5515,570,0 11 116693464 rs5092 C T 6610.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6639,675,0 11 116701535 rs4520 T C 7459.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.3;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7488,672,0 11 116734545 rs11216164 G A 3978.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=1.923 GT:AD:DP:GQ:PL 1/1:0,121:121:99:4007,363,0 11 116738705 rs55780426 G A 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.925;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.984;SOR=0.561 GT:AD:DP:GQ:PL 0/1:82,80:162:99:1943,0,1942 11 117034619 rs7122944 G T 2973.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.538 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3002,291,0 11 117042377 rs4936367 G A 1329.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.976 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:117042377_G_A:1358,138,0 11 117059552 rs474339 G A 2857.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=1.384 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2886,298,0 11 117064693 rs521171 C G 2880.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2909,294,0 11 117152302 . CT C 94.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.309;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.13;ReadPosRankSum=1.305;SOR=0.957 GT:AD:DP:GQ:PL 0/1:68,16:88:99:132,0,1677 11 117160347 rs539765 A G 7044.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7073,693,0 11 117252489 rs897836 T C 6808.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6837,713,0 11 117266312 rs2305830 C G 7067.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7096,699,0 11 117266754 rs693147 A C 5465.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5494,522,0 11 117267884 rs573455 A G 7889.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,269:269:99:7918,807,0 11 117282800 rs522885 G T 4394.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=1.153 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4423,402,0 11 117303108 rs76347292 T C 3463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.916;QD=12.15;ReadPosRankSum=-0.411;SOR=0.647 GT:AD:DP:GQ:PL 0/1:129,156:285:99:3492,0,2793 11 117303858 rs11216382 T C 1731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.397;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.31;ReadPosRankSum=-0.666;SOR=0.83 GT:AD:DP:GQ:PL 0/1:50,71:121:99:1760,0,1050 11 117304196 rs2242133 C T 1323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-2.594;SOR=0.896 GT:AD:DP:GQ:PL 0/1:86,61:147:99:1352,0,2193 11 117309581 rs61905269 G A 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=1.278;SOR=0.848 GT:AD:DP:GQ:PL 0/1:88,84:172:99:1802,0,2027 11 117335722 rs538847 T C 8786.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8815,867,0 11 117403235 rs3741280 G T 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-1.871;SOR=0.811 GT:AD:DP:GQ:PL 0/1:82,82:164:99:2084,0,2225 11 117647496 rs17311045 C T 1441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=0.172;SOR=0.424 GT:AD:DP:GQ:PL 0/1:84,68:152:99:1470,0,2129 11 117774291 rs2845712 A C 7953.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7982,783,0 11 117776471 rs3802873 C T 954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.294;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.19;SOR=1.032 GT:AD:DP:GQ:PL 0/1:41,41:82:99:983,0,986 11 117781435 rs2155194 A G 3852.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3881,404,0 11 117789312 rs201746372 CGGGCTGGAGATGCCT C 14050.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DB;DP=573;ExcessHet=3.0103;FS=11.04;MLEAC=2;MLEAF=1;MQ=63.23;MQRankSum=-0.1;QD=27.82;ReadPosRankSum=2.282;SOR=0.635 GT:AD:DP:GQ:PL 1/1:11,494:505:99:14088,1356,0 11 117860305 rs4252303 G A 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.162;SOR=0.639 GT:AD:DP:GQ:PL 0/1:84,88:172:99:2014,0,1994 11 117864047 rs2256111 A G 1282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.08;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=-0.745;SOR=1.051 GT:AD:DP:GQ:PL 0/1:82,58:140:99:1311,0,2107 11 117864113 rs2228054 G A 1491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.649;SOR=0.892 GT:AD:DP:GQ:PL 0/1:54,63:117:99:1520,0,1279 11 117864846 rs2228055 A G 1574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.15;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.894;SOR=0.768 GT:AD:DP:GQ:PL 0/1:54,61:115:99:1603,0,1217 11 117869670 rs2229113 A G 7088.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7117,737,0 11 117982495 rs1941635 T G 4704.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=1.226 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4733,437,0 11 117988082 rs642215 T C 5290.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5319,541,0 11 118037813 rs8192613 G T 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.15;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-0.003;SOR=0.412 GT:AD:DP:GQ:PL 0/1:58,70:128:99:1786,0,1642 11 118074337 rs1793174 A G 3793.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3822,395,0 11 118081345 rs17121881 A T 5763.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5792,603,0 11 118107805 rs1793140 A G 4081.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4110,396,0 11 118110977 rs2853006 T C 4811.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4840,466,0 11 118178007 rs1126924 C T 1461.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.07;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1490,160,0 11 118255662 . TA T 133.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.754;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.81;ReadPosRankSum=0.859;SOR=0.693 GT:AD:DP:GQ:PL 0/1:13,10:30:99:171,0,182 11 118404804 rs6589664 G A 1950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.098;SOR=0.439 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1979,0,1719 11 118509668 rs483598 A G 4346.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4375,461,0 11 118514625 rs11216938 C T 1341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-0.809;SOR=0.521 GT:AD:DP:GQ:PL 0/1:79,57:136:99:1370,0,2099 11 118529017 rs6589669 T G 9281.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.973;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;MQRankSum=0.166;QD=30.73;ReadPosRankSum=-0.867;SOR=0.928 GT:AD:DP:GQ:PL 1/1:2,300:302:99:9310,815,0 11 118529044 rs11448549 C CG 14443.7 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=45.14;SOR=0.718 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,320:320:99:1|1:118529044_C_CG:14481,984,0 11 118529069 rs6589670 G C 14902.8 PASS AC=2;AF=1;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=45.3;SOR=0.749 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,329:329:99:1|1:118529044_C_CG:14931,999,0 11 118529078 rs6589671 G C 14461.8 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=45.33;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,319:319:99:1|1:118529044_C_CG:14490,981,0 11 118529127 rs7928371 G A 3006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=4.964;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=2.178;QD=11.65;ReadPosRankSum=1.951;SOR=0.474 GT:AD:DP:GQ:PL 0/1:139,119:258:99:3035,0,3773 11 118529595 rs745663 A G 1731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.742;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.6;ReadPosRankSum=0.17;SOR=0.706 GT:AD:DP:GQ:PL 0/1:43,68:111:99:1760,0,1225 11 118530611 rs2276065 T C 3077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.02;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.93;SOR=0.661 GT:AD:DP:GQ:PL 0/1:126,134:260:99:3106,0,2773 11 118534082 rs10790256 C T 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.51;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=7.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=1.513;SOR=0.298 GT:AD:DP:GQ:PL 0/1:69,56:125:99:1333,0,1940 11 118625609 rs580079 C T 3896.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=1.335 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3925,387,0 11 118765267 rs598207 G C 6716.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6745,669,0 11 118769442 rs7104819 A G 11138.8 PASS AC=2;AF=1;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,356:356:99:11167,1067,0 11 118898435 rs56966114 AC A 6321.73 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.54;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,173:173:99:6359,521,0 11 118919206 rs568922 T C 4135.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4164,396,0 11 118925341 rs538478 G A 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.6;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.927;SOR=0.647 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2500,0,2377 11 118939939 rs5795166 T TC 7271.73 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=35.65;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,204:204:99:7309,623,0 11 118940957 rs1784302 C G 1453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=0.19;SOR=0.814 GT:AD:DP:GQ:PL 0/1:78,59:137:99:1482,0,2036 11 118944675 rs3825061 C T 1883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.778;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.276;SOR=0.577 GT:AD:DP:GQ:PL 0/1:96,84:180:99:1912,0,2542 11 118947634 rs540261 C T 2724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.118;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-1.177;SOR=0.799 GT:AD:DP:GQ:PL 0/1:131,120:251:99:2753,0,3051 11 118949331 rs1177562 C T 3227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=1.514;SOR=0.588 GT:AD:DP:GQ:PL 0/1:129,145:274:99:3256,0,3179 11 118952173 rs15818 A G 2219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.75;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.51;ReadPosRankSum=-1.042;SOR=0.75 GT:AD:DP:GQ:PL 0/1:72,81:153:99:2248,0,1975 11 118959331 rs17075 G A 600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.07;ReadPosRankSum=1.108;SOR=0.933 GT:AD:DP:GQ:PL 0/1:55,30:85:99:629,0,1390 11 118962230 rs1131488 G T 1083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.042;SOR=0.791 GT:AD:DP:GQ:PL 0/1:47,52:99:99:1112,0,1031 11 118963869 rs150428209 G A 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=3.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=-0.907;SOR=0.711 GT:AD:DP:GQ:PL 0/1:101,64:165:99:1422,0,2641 11 118967758 rs643788 T C 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.69;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=0.11;SOR=0.515 GT:AD:DP:GQ:PL 0/1:106,121:227:99:3034,0,2356 11 119005088 rs512703 C T 5674.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5703,571,0 11 119064558 rs12417928 G A 2821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.208;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.669;SOR=0.876 GT:AD:DP:GQ:PL 0/1:119,119:238:99:2850,0,2726 11 119181170 rs2249466 T C 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.215;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.222;SOR=0.488 GT:AD:DP:GQ:PL 0/1:48,37:85:99:944,0,1175 11 119205830 rs12795576 A G 1158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.212;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.395;SOR=0.718 GT:AD:DP:GQ:PL 0/1:47,45:92:99:1187,0,1074 11 119206375 rs2511841 G A 2705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.669;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=2.253;SOR=0.789 GT:AD:DP:GQ:PL 0/1:106,107:213:99:2734,0,2607 11 119216231 rs2510143 A G 5410.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5439,555,0 11 119216504 rs3814762 C T 2668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.189;SOR=0.738 GT:AD:DP:GQ:PL 0/1:138,118:256:99:2697,0,3447 11 119229964 rs2241646 G A 3207.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3236,309,0 11 119244095 rs587985 C T 10097.8 PASS AC=2;AF=1;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.095 GT:AD:DP:GQ:PL 1/1:0,333:333:99:10126,997,0 11 119252199 rs670906 T G 5168.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5197,510,0 11 119510644 rs7940667 A C 8030.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.272;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.28;ReadPosRankSum=1.317;SOR=0.297 GT:AD:DP:GQ:PL 1/1:1,283:284:99:8059,840,0 11 119999191 rs569044 A G 4110.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4139,405,0 11 120099658 rs2508489 A G 6121.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.35;SOR=0.973 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,135:135:99:1|1:120099658_A_G:6150,418,0 11 120099679 rs2508490 G A 6746.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.17;SOR=1.036 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,160:160:99:1|1:120099658_A_G:6775,487,0 11 120107411 rs882856 G A 2177.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.93;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2206,251,0 11 120175749 rs7110845 A G 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-1.346;QD=11.24;ReadPosRankSum=-1.359;SOR=0.551 GT:AD:DP:GQ:PL 0/1:69,63:132:99:1512,0,1760 11 120198093 rs1893261 G A 1158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.951;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.431;SOR=0.728 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1187,0,1456 11 120292570 rs532006 T A 2485.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.62;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2514,269,0 11 120319064 rs2305008 A C 936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=0.438;SOR=0.702 GT:AD:DP:GQ:PL 0/1:52,46:98:99:965,0,1202 11 120328858 rs766894 T C 1025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.018;SOR=0.883 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1054,0,1151 11 120355230 rs503473 A G 597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.283;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=0.64;SOR=0.749 GT:AD:DP:GQ:PL 0/1:49,27:76:99:626,0,1238 11 120355791 rs9625 G T 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.78;ReadPosRankSum=0.483;SOR=0.597 GT:AD:DP:GQ:PL 0/1:83,41:124:99:745,0,1960 11 120776001 rs2156634 G A 2053.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.681 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2082,198,0 11 120827609 rs644057 A G 4670.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4699,474,0 11 120989335 rs612969 A G 3813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-1.349;SOR=0.804 GT:AD:DP:GQ:PL 0/1:127,162:289:99:3842,0,3106 11 120996292 rs536069 A G 4128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-2.519;SOR=0.671 GT:AD:DP:GQ:PL 0/1:174,174:348:99:4157,0,4169 11 121000784 rs586473 T C 3880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=0.023;SOR=0.768 GT:AD:DP:GQ:PL 0/1:141,161:302:99:3909,0,3647 11 121016818 rs12275038 G A 1921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.432;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-2.258;SOR=1.181 GT:AD:DP:GQ:PL 0/1:117,85:202:99:1950,0,2840 11 121016838 rs7130952 C T 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.701;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=9.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-1.006;SOR=1.454 GT:AD:DP:GQ:PL 0/1:99,60:159:99:1555,0,2445 11 121032978 rs526433 G A 8024.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8053,827,0 11 121367626 rs12364988 T C 3291.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3320,342,0 11 121403229 rs636588 T C 4404.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4433,437,0 11 121437819 rs1699107 C G 3854.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3883,384,0 11 121445084 rs1792126 T C 3403.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3432,330,0 11 121448090 rs2070045 T G 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.199;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-2.222;SOR=0.629 GT:AD:DP:GQ:PL 0/1:103,67:170:99:1447,0,2466 11 121475922 rs3824968 T A 3342.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3371,352,0 11 121491782 rs1792120 G A 1998.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2027,194,0 11 122646936 rs34347341 C G 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=0.126;SOR=0.591 GT:AD:DP:GQ:PL 0/1:45,36:81:99:780,0,1089 11 122653950 rs2156802 C T 1847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.541;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=0.19;SOR=0.689 GT:AD:DP:GQ:PL 0/1:70,77:147:99:1876,0,1603 11 122665437 rs872414 A G 1565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=-1.097;SOR=0.695 GT:AD:DP:GQ:PL 0/1:101,73:174:99:1594,0,2362 11 122680599 rs1540108 C T 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-1.001;SOR=0.742 GT:AD:DP:GQ:PL 0/1:76,59:135:99:1411,0,2175 11 122738261 rs2272094 A G 4549.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4578,437,0 11 122928622 rs4802 A G 1015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.816;SOR=0.524 GT:AD:DP:GQ:PL 0/1:53,44:97:99:1044,0,1344 11 123396844 rs17740690 C T 379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.13;ReadPosRankSum=0.442;SOR=0.498 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,22:62:99:1|0:123396838_G_T:408,0,1076 11 123596703 rs3183878 A C 2434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.283;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=1.025;SOR=0.679 GT:AD:DP:GQ:PL 0/1:109,97:206:99:2463,0,2700 11 123598941 rs2282644 T C 2143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.358;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-0.987;SOR=0.486 GT:AD:DP:GQ:PL 0/1:118,92:210:99:2172,0,2764 11 123600475 rs1144507 A G 2798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=0.106;SOR=0.545 GT:AD:DP:GQ:PL 0/1:123,114:237:99:2827,0,3074 11 123676388 rs76301014 G A 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-1.32;SOR=0.485 GT:AD:DP:GQ:PL 0/1:64,49:113:99:1145,0,1806 11 123753937 rs1939927 A G 3894.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.62;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3923,422,0 11 123754844 rs10893099 T C 4159.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4188,405,0 11 123777302 rs17127947 T G 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=0.874;SOR=0.681 GT:AD:DP:GQ:PL 0/1:43,61:104:99:1539,0,989 11 123777412 rs17127950 A G 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.425;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=1.416;SOR=0.41 GT:AD:DP:GQ:PL 0/1:52,55:107:99:1493,0,1301 11 123777497 rs10750250 G A 5537.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.67;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,147:147:99:5566,447,0 11 123777498 rs10893102 C T 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=5.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.749;SOR=0.824 GT:AD:DP:GQ:PL 0/1:70,79:149:99:1856,0,1671 11 123777536 rs7926767 G A 4151.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4180,432,0 11 123777736 rs10790610 T C 2424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.85;ReadPosRankSum=-0.63;SOR=0.687 GT:AD:DP:GQ:PL 0/1:57,96:153:99:2453,0,1237 11 123777861 rs61748875 T C 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.838;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.227;SOR=0.726 GT:AD:DP:GQ:PL 0/1:72,59:131:99:1550,0,1646 11 123777986 rs7942047 T C 2696.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.375 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2725,254,0 11 123778031 rs7927385 G A 1800.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=1.733 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1829,173,0 11 123810492 rs77776318 A C 1694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.279;SOR=0.742 GT:AD:DP:GQ:PL 0/1:75,77:152:99:1723,0,1838 11 123813823 rs7129884 G A 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.469;SOR=0.488 GT:AD:DP:GQ:PL 0/1:76,73:149:99:1716,0,1875 11 123813940 rs7130003 G C 1655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.11;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-0.648;SOR=0.922 GT:AD:DP:GQ:PL 0/1:87,68:155:99:1684,0,2240 11 123814489 rs4936859 A G 1519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.57;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=5.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.077;SOR=0.34 GT:AD:DP:GQ:PL 0/1:54,66:120:99:1548,0,1283 11 123847392 rs10893117 G C 1477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.647;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.554;SOR=0.549 GT:AD:DP:GQ:PL 0/1:76,60:136:99:1506,0,1942 11 123886307 rs79057843 C T 4517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.454;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=8.668;MLEAC=1;MLEAF=0.5;MQ=56.35;MQRankSum=6.377;QD=23.17;ReadPosRankSum=-1.968;SOR=1.251 GT:AD:DP:GQ:PL 0/1:79,116:195:99:4546,0,2833 11 123886308 rs11219407 A G 8629.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.35;QD=44.26;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,195:195:99:8658,587,0 11 123886320 rs12224056 A G 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=11.081;MLEAC=1;MLEAF=0.5;MQ=56.37;MQRankSum=-6.267;QD=12.65;ReadPosRankSum=0.92;SOR=0.398 GT:AD:DP:GQ:PL 0/1:132,74:206:99:2635,0,5034 11 123886352 rs547068 T C 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.974;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=37.742;MLEAC=1;MLEAF=0.5;MQ=52.93;MQRankSum=-6.133;QD=5.52;ReadPosRankSum=-1.975;SOR=2.081 GT:AD:DP:GQ:PL 0/1:174,61:235:99:1325,0,4300 11 123886681 rs1893766 A G 5025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.021;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.5;MQ=52.78;MQRankSum=-0.781;QD=13.33;ReadPosRankSum=-0.013;SOR=0.731 GT:AD:DP:GQ:PL 0/1:169,208:377:99:5054,0,3891 11 123886865 rs4084209 T A 11841.8 PASS AC=2;AF=1;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.57;QD=30.36;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,390:390:99:11870,1170,0 11 123886984 rs4936880 A G 3393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.61;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.335;SOR=0.685 GT:AD:DP:GQ:PL 0/1:156,140:296:99:3422,0,3840 11 123887164 rs4936881 A C 1655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.714;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.5;MQ=59.29;MQRankSum=1.898;QD=12.45;ReadPosRankSum=-0.388;SOR=0.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,62:133:99:0|1:123887164_A_C:1684,0,1719 11 123887184 rs4936882 T G 4599.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.08;QD=38.33;SOR=1.316 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:123887164_A_C:4628,366,0 11 123893984 rs148015773 A C 851.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=38.86;MQRankSum=0.772;QD=17.75;ReadPosRankSum=1.083;SOR=1.19 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,23:48:99:0|1:123893984_A_C:880,0,1069 11 123893987 rs142337884 G A 614.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.443;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=6.646;MLEAC=1;MLEAF=0.5;MQ=38.81;MQRankSum=-0.188;QD=13.36;ReadPosRankSum=-0.887;SOR=0.188 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,21:46:99:1|0:123893984_A_C:643,0,1031 11 123893988 rs145930558 C T 854.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.672;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=38.84;MQRankSum=0.826;QD=18.19;ReadPosRankSum=1.172;SOR=1.017 GT:AD:DP:GQ:PGT:PID:PL 0/1:24,23:47:99:0|1:123893984_A_C:883,0,1037 11 123894119 rs12366219 A G 1792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.721;MLEAC=1;MLEAF=0.5;MQ=44.42;MQRankSum=-1.135;QD=14.46;ReadPosRankSum=-0.497;SOR=0.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,65:124:99:0|1:123894119_A_G:1821,0,1741 11 123894136 rs28499345 A G 5584.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.6;QD=38.78;SOR=1.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,144:144:99:1|1:123894119_A_G:5613,433,0 11 123894234 rs11219413 A G 4439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0;DB;DP=392;ExcessHet=3.0103;FS=5.783;MLEAC=1;MLEAF=0.5;MQ=57.83;MQRankSum=-3.02;QD=11.38;ReadPosRankSum=-0.594;SOR=0.956 GT:AD:DP:GQ:PL 0/1:201,189:390:99:4468,0,4917 11 123894402 rs12221656 A G 4071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.871;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.5;QD=12.19;ReadPosRankSum=1.5;SOR=0.754 GT:AD:DP:GQ:PL 0/1:177,157:334:99:4100,0,4152 11 123909073 rs11219419 C G 4623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.5;MQ=57.71;MQRankSum=0.485;QD=13.17;ReadPosRankSum=0.663;SOR=0.551 GT:AD:DP:GQ:PL 0/1:171,180:353:99:4652,0,4593 11 123909172 rs28414940 G A 5098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.657;ClippingRankSum=0;DB;DP=427;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=54.25;MQRankSum=-0.438;QD=11.94;ReadPosRankSum=1.879;SOR=0.708 GT:AD:DP:GQ:PL 0/1:218,209:427:99:5127,0,5192 11 123909342 rs470242 G A 4108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.82;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.5;MQ=56.86;MQRankSum=-6.646;QD=12.05;ReadPosRankSum=0.734;SOR=0.644 GT:AD:DP:GQ:PL 0/1:178,163:341:99:4137,0,4355 11 123909627 rs11219420 T C 4762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.66;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=15.695;MLEAC=1;MLEAF=0.5;MQ=46.7;MQRankSum=2.685;QD=13.73;ReadPosRankSum=-2.332;SOR=1.014 GT:AD:DP:GQ:PGT:PID:PL 0/1:216,131:347:99:0|1:123909627_T_C:4791,0,8457 11 123909637 rs4936889 G T 4721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.52;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=11.095;MLEAC=1;MLEAF=0.5;MQ=47.94;MQRankSum=3.574;QD=13.73;ReadPosRankSum=0.278;SOR=0.763 GT:AD:DP:GQ:PGT:PID:PL 0/1:211,133:344:99:0|1:123909627_T_C:4750,0,8303 11 123909650 rs3894199 C G 5720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.229;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.57;MQRankSum=-0.753;QD=16.83;ReadPosRankSum=0.789;SOR=0.676 GT:AD:DP:GQ:PGT:PID:PL 0/1:188,152:340:99:0|1:123909650_C_G:5749,0,7342 11 123909653 rs4998340 G T 5880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.95;MQRankSum=-0.679;QD=17.71;ReadPosRankSum=0.422;SOR=0.677 GT:AD:DP:GQ:PGT:PID:PL 0/1:183,149:332:99:0|1:123909650_C_G:5909,0,7338 11 123909656 rs3894198 G A 5759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.5;MQ=50.65;MQRankSum=-0.635;QD=17.83;ReadPosRankSum=-0.511;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 0/1:175,148:323:99:0|1:123909650_C_G:5788,0,7236 11 123909695 rs3894197 G C 7853.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.869;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.14;MQRankSum=0.805;QD=33;ReadPosRankSum=2.01;SOR=0.567 GT:AD:DP:GQ:PL 1/1:1,237:238:99:7882,706,0 11 124120821 rs12099154 T C 8723.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=30.5;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8752,857,0 11 124121018 rs200629834 T C 2334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.981;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.418;SOR=0.737 GT:AD:DP:GQ:PL 0/1:91,91:182:99:2363,0,2186 11 124252422 rs503220 G A 5114.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.09;QD=29.06;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5143,528,0 11 124252718 rs886201 G A 3235.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.707;MLEAC=2;MLEAF=1;MQ=50.38;MQRankSum=1.574;QD=29.96;ReadPosRankSum=-0.722;SOR=0.754 GT:AD:DP:GQ:PL 1/1:1,107:108:99:3264,292,0 11 124252750 rs886202 G A 2434.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=3.68;MLEAC=2;MLEAF=1;MQ=42.7;MQRankSum=1.46;QD=31.62;ReadPosRankSum=-0.78;SOR=0.746 GT:AD:DP:GQ:PL 1/1:1,76:77:99:2463,199,0 11 124252892 rs644147 A G 4851.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.06;QD=30.51;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4880,477,0 11 124253100 rs71491826 G A 1282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.481;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=22.156;MLEAC=1;MLEAF=0.5;MQ=53.46;MQRankSum=-11.151;QD=6.35;ReadPosRankSum=2.102;SOR=1.684 GT:AD:DP:GQ:PL 0/1:138,64:202:99:1311,0,4066 11 124253147 rs530704 A G 3047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.425;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=8.299;MLEAC=1;MLEAF=0.5;MQ=54.67;MQRankSum=7.197;QD=13.19;ReadPosRankSum=-0.522;SOR=0.578 GT:AD:DP:GQ:PL 0/1:115,116:231:99:3076,0,2503 11 124253161 rs530740 G A 4045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.288;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=5.214;MLEAC=1;MLEAF=0.5;MQ=53.45;MQRankSum=6.376;QD=16.93;ReadPosRankSum=0.745;SOR=0.67 GT:AD:DP:GQ:PGT:PID:PL 0/1:129,110:239:99:0|1:124253161_G_A:4074,0,5019 11 124253170 rs530765 G A 3998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.047;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=5.26;MLEAC=1;MLEAF=0.5;MQ=52.95;MQRankSum=5.648;QD=16.8;ReadPosRankSum=1.47;SOR=0.864 GT:AD:DP:GQ:PGT:PID:PL 0/1:133,105:238:99:0|1:124253161_G_A:4027,0,5122 11 124253181 rs28373946 T C 6419.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.64;QD=28.16;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6448,682,0 11 124266906 rs530992 C T 8469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.703;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=4.182;MLEAC=1;MLEAF=0.5;MQ=54.52;MQRankSum=8.231;QD=36.83;ReadPosRankSum=3.996;SOR=0.375 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,207:230:99:0|1:124266906_C_T:8498,0,199 11 124266912 rs28398895 A G 8487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.553;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=5.156;MLEAC=1;MLEAF=0.5;MQ=55.8;MQRankSum=7.713;QD=38.76;ReadPosRankSum=3.424;SOR=0.299 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,203:219:99:0|1:124266906_C_T:8516,0,119 11 124267148 rs77374761 C T 938.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.08;QD=37.55;SOR=6.518 GT:AD:DP:GQ:PL 1/1:0,25:25:75:967,75,0 11 124267177 rs61910862 T C 553.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.75;QD=34.61;SOR=5.67 GT:AD:DP:GQ:PL 1/1:0,16:16:48:582,48,0 11 124267189 rs507335 T C 480.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.26;QD=34.34;SOR=5.421 GT:AD:DP:GQ:PL 1/1:0,14:14:42:509,42,0 11 124310622 rs4296049 A G 2377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.805;SOR=0.68 GT:AD:DP:GQ:PL 0/1:135,99:234:99:2406,0,3486 11 124440362 rs55861866 C G 2057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.99;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-0.983;SOR=0.696 GT:AD:DP:GQ:PL 0/1:72,76:148:99:2086,0,1899 11 124440617 rs12792184 C T 4413.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4442,441,0 11 124482977 rs34498516 G C 1785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.199;SOR=0.9 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1814,0,2198 11 124489567 rs34237602 T C 2591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.585;SOR=0.653 GT:AD:DP:GQ:PL 0/1:93,111:204:99:2620,0,2071 11 124610011 rs11399333 C CG 1164.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.44;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=-0.134;SOR=0.925 GT:AD:DP:GQ:PL 0/1:78,50:128:99:1202,0,2097 11 124619766 . CAAAA C 279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.54;ReadPosRankSum=0.054;SOR=0.804 GT:AD:DP:GQ:PL 0/1:8,10:38:99:308,0,634 11 124739332 rs11219820 A C 760.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.36;ReadPosRankSum=-0.707;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:2,28:30:29:1|1:124739331_CA_C:789,29,0 11 124747837 rs7933204 G A 2105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.61;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=-0.037;SOR=1.165 GT:AD:DP:GQ:PL 0/1:58,87:145:99:2134,0,1245 11 124751127 rs147605571 C T 784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.77;ReadPosRankSum=0.478;SOR=0.374 GT:AD:DP:GQ:PL 0/1:62,39:101:99:813,0,1695 11 124789755 rs3802904 T C 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.122;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.793;SOR=0.466 GT:AD:DP:GQ:PL 0/1:87,57:144:99:1444,0,2183 11 124793682 rs10790715 T C 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.28;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=1.141;SOR=0.656 GT:AD:DP:GQ:PL 0/1:104,72:176:99:1802,0,2560 11 124829914 rs7482800 T A 757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=-0.328;SOR=0.801 GT:AD:DP:GQ:PL 0/1:46,35:81:99:786,0,1186 11 124857708 rs4936966 G A 3144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.822;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.219;SOR=0.823 GT:AD:DP:GQ:PL 0/1:111,131:242:99:3173,0,2957 11 124861377 rs61752520 A G 1015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=6.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=-0.436;SOR=0.312 GT:AD:DP:GQ:PL 0/1:27,45:72:99:1044,0,586 11 124862514 rs6590113 A G 978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.08;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=5.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.65;SOR=0.843 GT:AD:DP:GQ:PL 0/1:44,42:86:99:1007,0,1006 11 124863136 rs7951202 C A 830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=0.767;SOR=0.472 GT:AD:DP:GQ:PL 0/1:22,37:59:99:859,0,518 11 124873755 rs72518768 CT C 601.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=2.345;SOR=0.449 GT:AD:DP:GQ:PL 0/1:28,21:49:99:639,0,897 11 124875124 rs35971753 T C 469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.181;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.016;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,22:47:99:0|1:124875124_T_C:498,0,567 11 124908352 rs7107487 T C 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.751;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.602;SOR=0.634 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1228,0,1231 11 124947149 rs12276567 G A 564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.64;ReadPosRankSum=0.273;SOR=0.467 GT:AD:DP:GQ:PL 0/1:56,29:85:99:593,0,1461 11 124947396 rs55752830 A G 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.42;ReadPosRankSum=1.922;SOR=0.566 GT:AD:DP:GQ:PL 0/1:35,73:108:99:1802,0,690 11 124949044 rs33932952 C T 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.183;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-2.034;SOR=0.708 GT:AD:DP:GQ:PL 0/1:75,102:177:99:2338,0,1832 11 124949665 rs55889403 A G 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.313;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=-1.279;SOR=0.864 GT:AD:DP:GQ:PL 0/1:55,42:97:99:920,0,1242 11 124951311 rs75801851 T C 1289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.418;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.1;SOR=0.596 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1318,0,1556 11 124955032 rs948268 T C 3951.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3980,426,0 11 124955274 rs3824925 C T 1717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=0.229;SOR=1.073 GT:AD:DP:GQ:PL 0/1:45,68:113:99:1746,0,1128 11 125452300 rs55912941 A AC 4912.73 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.3;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4950,382,0 11 125452313 rs4627097 A G 1325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.717;SOR=0.871 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1354,0,1403 11 125479363 rs2241502 G A 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.597;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=0.546;SOR=0.811 GT:AD:DP:GQ:PL 0/1:118,68:186:99:1571,0,2857 11 125479496 rs2241501 C T 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=1.935;SOR=0.798 GT:AD:DP:GQ:PL 0/1:106,87:193:99:1917,0,2672 11 125488247 . CT C 214.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.26;ReadPosRankSum=0.767;SOR=0.554 GT:AD:DP:GQ:PL 0/1:72,23:114:99:252,0,1717 11 125525195 rs506504 A G 2646.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2675,269,0 11 125617317 rs496459 A G 861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.361;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.776;SOR=0.643 GT:AD:DP:GQ:PL 0/1:45,35:80:99:890,0,1009 11 125617606 rs537916 G A 2288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-0.274;SOR=0.74 GT:AD:DP:GQ:PL 0/1:106,100:206:99:2317,0,4063 11 125617610 rs2114084 A G 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=1.008;SOR=0.6 GT:AD:DP:GQ:PL 0/1:101,102:203:99:2426,0,3873 11 125659423 rs495869 A C 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.075;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.341;SOR=0.452 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1474,0,1571 11 125707761 rs11220236 A C 840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=3.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.16;ReadPosRankSum=0.692;SOR=0.409 GT:AD:DP:GQ:PL 0/1:63,40:103:99:869,0,1506 11 125708198 rs10160391 C T 3127.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3156,323,0 11 125763746 rs3088241 C G 1940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.592;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=-0.809;SOR=1.04 GT:AD:DP:GQ:PL 0/1:61,74:135:99:1969,0,1371 11 125766044 rs549990 C A 3981.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4010,402,0 11 125766173 rs622756 A C 3133.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.98;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3162,293,0 11 125769354 rs667782 T C 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.137;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.014;SOR=0.741 GT:AD:DP:GQ:PL 0/1:89,78:167:99:1777,0,2065 11 125778074 rs5795465 AT A 734.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.109;QD=7.35;ReadPosRankSum=0.663;SOR=0.566 GT:AD:DP:GQ:PL 0/1:57,43:105:99:772,0,1296 11 125788678 rs683155 T C 2352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.122;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=1.321;SOR=0.783 GT:AD:DP:GQ:PL 0/1:96,96:192:99:2381,0,2212 11 125817611 rs11220283 T C 3454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.345;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.85;ReadPosRankSum=0.126;SOR=0.698 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,95:205:99:0|1:125817611_T_C:3483,0,5568 11 125817628 rs73019347 G A 3398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.822;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.03;ReadPosRankSum=0.026;SOR=0.614 GT:AD:DP:GQ:PGT:PID:PL 0/1:114,98:212:99:0|1:125817611_T_C:3427,0,5679 11 125817885 rs9888223 C T 2431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=9.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.536;SOR=0.881 GT:AD:DP:GQ:PL 0/1:150,106:256:99:2460,0,3836 11 125818237 rs483216 G A 2807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=7.367;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.185;SOR=0.525 GT:AD:DP:GQ:PL 0/1:106,120:226:99:2836,0,2733 11 125818297 rs635798 C T 8758.77 PASS AC=2;AF=1;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,301:301:99:8787,903,0 11 125818405 rs635346 G A 2566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.65;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.079;SOR=0.732 GT:AD:DP:GQ:PL 0/1:108,106:214:99:2595,0,2865 11 125823353 rs35545375 C T 3164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.351;SOR=0.836 GT:AD:DP:GQ:PL 0/1:147,138:285:99:3193,0,3558 11 125830970 rs684535 A T 2936.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.97;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2965,314,0 11 125831701 rs2276061 G A 1314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.196;SOR=0.746 GT:AD:DP:GQ:PL 0/1:71,58:129:99:1343,0,1825 11 125848261 rs3740904 C T 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.611;SOR=0.808 GT:AD:DP:GQ:PL 0/1:36,36:72:99:861,0,853 11 125864242 . A G 863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.408;SOR=0.576 GT:AD:DP:GQ:PL 0/1:29,38:67:99:892,0,641 11 125891162 rs35131477 A G 1673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.544;SOR=0.483 GT:AD:DP:GQ:PL 0/1:80,68:148:99:1702,0,2097 11 126080776 rs71475941 G A 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.865;SOR=0.419 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1421,0,1866 11 126081336 rs587891 T C 3913.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.24;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3942,324,0 11 126081403 rs2282580 T C 2574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=7.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.396;SOR=0.701 GT:AD:DP:GQ:PL 0/1:106,111:217:99:2603,0,2588 11 126139100 rs1786702 T C 2383.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.57;SOR=1.643 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2412,213,0 11 126139313 rs1786703 T A 3076.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3105,323,0 11 126162843 rs8177374 C T 2531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-0.882;SOR=0.658 GT:AD:DP:GQ:PL 0/1:146,115:261:99:2560,0,3539 11 126162862 rs7932766 C T 3421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-0.496;SOR=0.668 GT:AD:DP:GQ:PL 0/1:108,141:249:99:3450,0,2580 11 126176578 rs637462 G A 8072.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8101,838,0 11 126201290 rs651922 A G 2080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.901;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.472;SOR=0.748 GT:AD:DP:GQ:PL 0/1:89,82:171:99:2109,0,2150 11 126201403 rs616360 T C 2938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.63;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.102;SOR=0.711 GT:AD:DP:GQ:PL 0/1:139,128:267:99:2967,0,3164 11 126201458 rs651034 A G 2478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=2.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.481;SOR=0.547 GT:AD:DP:GQ:PL 0/1:117,107:224:99:2507,0,2870 11 126277545 . G A 1493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=-0.221;QD=12.77;ReadPosRankSum=0.146;SOR=0.648 GT:AD:DP:GQ:PL 0/1:49,68:117:99:1522,0,1146 11 128772452 rs11221503 C T 6587.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6616,680,0 11 128773413 rs4937387 T C 3668.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3697,381,0 11 128781339 rs6590357 T C 7133.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7162,701,0 11 128781978 rs7118824 T G 6871.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.22;SOR=0.897 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,159:159:99:1|1:128781978_T_G:6900,478,0 11 128782002 rs7118833 T C 7275.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.91;SOR=0.879 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,162:162:99:1|1:128781978_T_G:7304,491,0 11 128782012 rs7102584 C G 7315.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.81;SOR=0.944 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,167:167:99:1|1:128781978_T_G:7344,509,0 11 128786294 rs4937391 G A 2036.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.33;SOR=1.926 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2065,189,0 11 128846547 rs665619 C A 733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.258;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=2.855;SOR=0.412 GT:AD:DP:GQ:PL 0/1:30,34:64:99:762,0,849 11 128868239 rs670440 T C 1524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=1.378;SOR=0.806 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1553,0,1830 11 129754627 rs12574106 G T 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.069;SOR=0.69 GT:AD:DP:GQ:PL 0/1:57,62:119:99:1451,0,1394 11 129754644 rs1131972 A G 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.22;SOR=0.583 GT:AD:DP:GQ:PL 0/1:68,68:136:99:1559,0,1687 11 129785594 rs3734073 G A 2855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.693;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=5.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.031;SOR=1.053 GT:AD:DP:GQ:PL 0/1:138,117:255:99:2884,0,3248 11 129793305 rs2241573 A G 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.41;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.846;SOR=0.467 GT:AD:DP:GQ:PL 0/1:102,102:204:99:2501,0,2561 11 129794950 rs2241571 T C 2938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.585;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-1.316;SOR=0.762 GT:AD:DP:GQ:PL 0/1:112,114:226:99:2967,0,2752 11 129801043 rs2277033 C T 3408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.811;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.036;SOR=0.524 GT:AD:DP:GQ:PL 0/1:131,135:266:99:3437,0,3603 11 129996662 rs111301435 G A 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.034;SOR=0.733 GT:AD:DP:GQ:PL 0/1:84,92:176:99:2035,0,1971 11 130064647 rs597661 G A 1686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.936;QD=12.68;ReadPosRankSum=0.702;SOR=0.697 GT:AD:DP:GQ:PL 0/1:61,72:133:99:1715,0,1449 11 130066335 rs476106 C T 1182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=1.076;SOR=0.804 GT:AD:DP:GQ:PL 0/1:72,58:130:99:1211,0,1761 11 130066452 rs11368852 G GC 1586.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.869;SOR=0.726 GT:AD:DP:GQ:PL 0/1:71,67:138:99:1624,0,1748 11 130275749 rs11222085 T C 3999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.587;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-1.092;SOR=0.686 GT:AD:DP:GQ:PL 0/1:164,155:319:99:4028,0,4091 11 130281488 rs2131535 G A 4686.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=1.406 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4715,464,0 11 130297948 rs7927048 C G 5427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.99;ReadPosRankSum=0.654;SOR=0.646 GT:AD:DP:GQ:PL 0/1:165,197:362:99:5456,0,4333 11 130297957 rs7942034 T C 14044.8 PASS AC=2;AF=1;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.01;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,360:360:99:14073,1084,0 11 130298117 rs71741127 GGCA G,GGCAGCA 11776.7 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DB;DP=424;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.13;MQRankSum=0.389;QD=30.75;ReadPosRankSum=-1.664;SOR=0.675 GT:AD:DP:GQ:PL 1/2:11,163,209:391:99:11814,5615,8357,6252,0,6041 11 130339312 rs731446 T C 7678.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.056 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7707,726,0 11 130750642 rs2298566 A C 4072.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4101,423,0 11 130776524 rs4414223 T C 779.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.322;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=-0.201;SOR=0.488 GT:AD:DP:GQ:PL 0/1:50,36:86:99:808,0,1109 11 130776556 rs61909161 T C 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=0.597;SOR=0.489 GT:AD:DP:GQ:PL 0/1:59,44:103:99:980,0,1385 11 130776613 rs4373936 A G 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.884;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.52;SOR=1.187 GT:AD:DP:GQ:PL 0/1:47,44:91:99:1059,0,1092 11 130780015 rs1781 C T 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.394;SOR=0.853 GT:AD:DP:GQ:PL 0/1:79,70:149:99:1512,0,1921 11 130780225 rs681982 C A 3464.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.28;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3493,380,0 11 130780268 rs113123833 TC T 63.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.64;ReadPosRankSum=-1.106;SOR=0.844 GT:AD:DP:GQ:PL 0/1:80,19:99:99:101,0,1715 11 130780270 rs1237478 C A 1681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.486;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.99;ReadPosRankSum=0.765;SOR=0.562 GT:AD:DP:GQ:PL 0/1:19,80:99:99:1710,0,101 11 130784754 rs3751037 C G 8056.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,252:252:99:8085,755,0 11 130784971 rs3751036 C G 8720.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8749,836,0 11 132177633 rs2305271 A C 4543.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4572,469,0 11 133712473 rs2257004 C T 2185.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2214,218,0 11 133714522 rs2282602 G A 3958.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.08;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3987,422,0 11 133792060 rs34274954 T A 878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.21;SOR=0.858 GT:AD:DP:GQ:PGT:PID:PL 0/1:51,40:91:99:0|1:133792021_T_C:907,0,1278 11 133815981 rs10894768 C G 4653.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.273 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4682,446,0 11 134078847 . TA T 55.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.3;ReadPosRankSum=0.86;SOR=0.439 GT:AD:DP:GQ:PL 0/1:34,9:45:93:93,0,840 11 134118382 rs369813830 C CA 540.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.784;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.304;QD=5.57;ReadPosRankSum=0.789;SOR=0.763 GT:AD:DP:GQ:PL 0/1:66,31:106:99:578,0,1344 11 134151975 rs472287 G C 5905.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.57;QD=29.53;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5934,600,0 11 134152030 rs10791352 G A 5170.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.99;QD=28.41;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5199,544,0 11 134158745 rs3824995 A G 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.321;SOR=0.668 GT:AD:DP:GQ:PL 0/1:54,49:103:99:1032,0,1186 11 134182375 rs2509062 G A 5561.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5590,574,0 11 134188542 rs481252 T C 868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-1.357;SOR=0.653 GT:AD:DP:GQ:PL 0/1:41,40:81:99:897,0,929 11 134188851 rs5795879 A AT 983.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.13;ReadPosRankSum=2.773;SOR=0.54 GT:AD:DP:GQ:PL 0/1:13,48:70:99:1021,0,105 11 134244123 rs3741097 C G 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.35;ReadPosRankSum=0.651;SOR=0.609 GT:AD:DP:GQ:PL 0/1:65,41:106:99:807,0,1623 11 134244631 rs876542 T C 592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.93;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=0.751;SOR=0.569 GT:AD:DP:GQ:PL 0/1:47,24:71:99:621,0,1017 12 235022 rs12822449 C T 8411.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8440,838,0 12 247900 rs7313003 G A 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.651;SOR=0.739 GT:AD:DP:GQ:PL 0/1:133,101:234:99:2393,0,3530 12 248202 rs56204927 C G 8800.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8829,830,0 12 274647 rs4980859 T C 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.083;SOR=0.62 GT:AD:DP:GQ:PL 0/1:53,48:101:99:1146,0,1276 12 275065 rs2291922 A G 2090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.68;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.447;SOR=0.585 GT:AD:DP:GQ:PL 0/1:89,81:170:99:2119,0,2087 12 284058 rs216230 T C 4818.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=2.515 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4847,453,0 12 311949 rs216250 A G 1846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-3.235;SOR=0.673 GT:AD:DP:GQ:PL 0/1:83,80:163:99:1875,0,1861 12 319111 rs526690 T C 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.711;SOR=0.597 GT:AD:DP:GQ:PL 0/1:87,105:192:99:2499,0,2023 12 319125 rs557881 A G 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.287;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.361;SOR=0.658 GT:AD:DP:GQ:PL 0/1:86,97:183:99:2340,0,1863 12 498267 . CGG C 1564.73 PASS AC=2;AF=1;AN=2;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=60.18;SOR=1.727 GT:AD:DP:GQ:PL 1/1:0,26:61:99:1226,127,0 12 644337 rs2075033 G A 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.539;SOR=0.545 GT:AD:DP:GQ:PL 0/1:51,51:102:99:1181,0,1252 12 661656 rs7298766 A G 1477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.478;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-0.891;SOR=0.458 GT:AD:DP:GQ:PL 0/1:58,60:118:99:1506,0,1335 12 662448 rs758790 T C 3136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.121;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.641;SOR=0.712 GT:AD:DP:GQ:PL 0/1:134,124:258:99:3165,0,3368 12 666943 rs7300933 A G 2225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.36;ReadPosRankSum=0.233;SOR=0.931 GT:AD:DP:GQ:PL 0/1:68,87:155:99:2254,0,1513 12 675339 rs34578646 T C 1340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.361;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.535;SOR=1.133 GT:AD:DP:GQ:PL 0/1:53,52:105:99:1369,0,1201 12 862989 rs3168640 T C 10144.8 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,307:307:99:10173,923,0 12 939302 rs10774466 A G 1949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.1;SOR=0.993 GT:AD:DP:GQ:PL 0/1:98,80:178:99:1978,0,2427 12 971291 rs2286007 C T 1896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.37;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-1.13;SOR=0.513 GT:AD:DP:GQ:PL 0/1:66,81:147:99:1925,0,1689 12 974308 rs141823469 T TC 2997.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.57;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=-0.407;SOR=0.668 GT:AD:DP:GQ:PL 0/1:106,109:215:99:3035,0,3001 12 974355 rs11441897 T TC 3546.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=-0.613;SOR=0.671 GT:AD:DP:GQ:PL 0/1:127,114:241:99:3584,0,3988 12 987482 rs1012729 G A 1837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.604;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=0.978;QD=11.71;ReadPosRankSum=-0.548;SOR=0.717 GT:AD:DP:GQ:PL 0/1:77,80:157:99:1866,0,1722 12 987533 rs5795952 C CT 400.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1.477;QD=6.36;ReadPosRankSum=-1.575;SOR=0.885 GT:AD:DP:GQ:PL 0/1:37,26:90:99:438,0,802 12 988894 rs9804992 G A 2212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.994;SOR=0.623 GT:AD:DP:GQ:PL 0/1:101,93:194:99:2241,0,2658 12 990912 rs956868 A C 3891.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3920,384,0 12 992229 rs34032084 C T 964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.587;SOR=0.823 GT:AD:DP:GQ:PL 0/1:46,47:93:99:993,0,1048 12 994487 rs7955371 G C 6625.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6654,632,0 12 998365 rs12828016 G T 3109.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3138,330,0 12 1017197 rs4766334 C T 5158.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5187,516,0 12 1035947 rs6489763 C A 4201.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.296 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4230,418,0 12 1038978 rs35278212 C CT 1550.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.86;ReadPosRankSum=1.43;SOR=0.58 GT:AD:DP:GQ:PL 0/1:46,46:92:99:1588,0,1537 12 1040373 rs7303748 T C 3182.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3211,335,0 12 1748834 rs2270036 T C 2957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.032;SOR=0.717 GT:AD:DP:GQ:PL 0/1:121,117:238:99:2986,0,3004 12 1889823 rs767870 G A 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=1.523;SOR=0.625 GT:AD:DP:GQ:PL 0/1:51,54:105:99:1327,0,1258 12 1995403 rs10735005 T C 4586.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4615,462,0 12 2058245 rs2240612 T C 2391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.648;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.069;SOR=0.725 GT:AD:DP:GQ:PL 0/1:122,100:222:99:2420,0,2886 12 2062323 rs71057810 T TTGC 3904.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=3.5;QD=12.16;ReadPosRankSum=2.034;SOR=0.761 GT:AD:DP:GQ:PL 0/1:155,166:326:99:3942,0,5447 12 2613716 rs2238087 C T 631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.621;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.394;SOR=0.477 GT:AD:DP:GQ:PL 0/1:30,28:58:99:660,0,645 12 2774833 rs41276710 T C 1425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.118;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.32;SOR=0.649 GT:AD:DP:GQ:PL 0/1:71,61:132:99:1454,0,1674 12 2788879 rs1051375 G A 2547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.137;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=4.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.158;SOR=0.93 GT:AD:DP:GQ:PL 0/1:101,103:204:99:2576,0,2341 12 2791130 rs10848683 C T 614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.879;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=-0.209;SOR=0.766 GT:AD:DP:GQ:PL 0/1:50,29:79:99:643,0,1145 12 2791132 rs10774053 A G 2668.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.36;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2697,240,0 12 2791205 rs10774054 A G 2444.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2473,257,0 12 2908330 rs56196860 C A 2586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.725;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.979;SOR=0.609 GT:AD:DP:GQ:PL 0/1:88,112:200:99:2615,0,1868 12 2968458 rs2215292 T C 2290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.862;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=0.526;SOR=0.685 GT:AD:DP:GQ:PL 0/1:84,88:172:99:2319,0,2053 12 3018675 rs11305670 AT A 516.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.98;QD=6.62;ReadPosRankSum=-1.856;SOR=0.571 GT:AD:DP:GQ:PL 0/1:46,32:96:99:554,0,1035 12 3046802 rs33973716 A G 834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=2.543;SOR=0.458 GT:AD:DP:GQ:PL 0/1:48,37:85:99:863,0,1133 12 3047466 rs2074987 G A 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=4.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=0.613;SOR=1.037 GT:AD:DP:GQ:PL 0/1:87,82:169:99:1862,0,2112 12 3049698 rs998814 T C 2723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.711;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=-0.412;SOR=0.991 GT:AD:DP:GQ:PL 0/1:85,107:192:99:2752,0,2029 12 3387697 rs16930370 T C 3108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.396;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.541;SOR=0.659 GT:AD:DP:GQ:PL 0/1:149,136:285:99:3137,0,3427 12 3389601 rs66501720 C T 1829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.071;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=2.347;SOR=0.52 GT:AD:DP:GQ:PL 0/1:105,76:181:99:1858,0,2543 12 3490546 rs9804924 T C 711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=0.526;SOR=0.922 GT:AD:DP:GQ:PL 0/1:55,33:88:99:740,0,1445 12 3692262 . G A 2345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0;DP=182;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=2.083;SOR=0.881 GT:AD:DP:GQ:PL 0/1:81,101:182:99:2374,0,1836 12 3782647 rs36030417 A T 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.306;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.308;SOR=0.686 GT:AD:DP:GQ:PL 0/1:111,86:197:99:2028,0,2520 12 3782701 rs17697920 C T 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.805;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=0.539;SOR=0.639 GT:AD:DP:GQ:PL 0/1:101,94:195:99:1934,0,2483 12 4388084 rs3217805 C G 4932.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4961,495,0 12 4446330 . C CATTT 1280.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.56;ReadPosRankSum=-0.451;SOR=0.323 GT:AD:DP:GQ:PL 0/1:36,33:69:99:1318,0,1748 12 4554548 rs7358740 G C 7726.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7755,770,0 12 4627414 rs35924298 C T 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.256;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=6.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=1.673;SOR=1.312 GT:AD:DP:GQ:PL 0/1:83,55:138:99:1422,0,2109 12 4705317 rs3741925 C T 4565.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4594,470,0 12 4735737 rs2072358 A G 5468.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5497,554,0 12 4736495 rs1990312 C T 6375.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6404,642,0 12 4736631 rs11063265 A G 6689.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6718,660,0 12 4736677 rs11063266 G C 6251.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6280,604,0 12 4736690 rs10774251 A G 6187.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6216,601,0 12 4737318 rs7960207 A G 5912.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5941,561,0 12 4737459 rs2072356 C T 6531.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6560,643,0 12 4737715 rs2072355 C T 6469.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.01;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6498,589,0 12 4768354 rs7972657 A C 2662.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.98;SOR=1.739 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2691,222,0 12 4771682 rs2267549 G A 1652.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1681,174,0 12 4830000 rs10849133 T G 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.784;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-1.119;SOR=1.155 GT:AD:DP:GQ:PL 0/1:47,46:93:99:1216,0,1097 12 4835882 rs2286578 T G 1370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.885;SOR=0.778 GT:AD:DP:GQ:PL 0/1:56,58:114:99:1399,0,1326 12 4873163 rs1468556 G T 191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.332;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.05;ReadPosRankSum=0.649;SOR=0.551 GT:AD:DP:GQ:PL 0/1:24,14:38:99:220,0,614 12 4881766 rs2286581 C T 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.134;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=5.183;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.06;ReadPosRankSum=0.208;SOR=1.221 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,47:96:99:0|1:4881766_C_T:1762,0,2449 12 4881775 rs2286582 T C 1590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.59;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.28;ReadPosRankSum=0.104;SOR=1.001 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,42:87:99:0|1:4881766_C_T:1619,0,2443 12 5021228 rs1048500 T C 2585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.33;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-0.199;SOR=0.697 GT:AD:DP:GQ:PL 0/1:120,106:226:99:2614,0,2933 12 5021348 rs2227910 G C 2183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.747;SOR=0.82 GT:AD:DP:GQ:PL 0/1:101,88:189:99:2212,0,2702 12 5021984 rs4766309 T A 3443.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3472,339,0 12 5022041 rs4766310 G A 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.681;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.505;SOR=0.64 GT:AD:DP:GQ:PL 0/1:35,44:79:99:1072,0,753 12 5154462 rs2359641 T C 10589.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.73;MQRankSum=-0.296;QD=31.42;ReadPosRankSum=0.058;SOR=0.253 GT:AD:DP:GQ:PL 1/1:1,336:337:99:10618,978,0 12 5674754 rs2277398 G A 4673.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.99;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4702,500,0 12 6030302 rs3741902 T C 3751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.99;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-0.77;SOR=0.665 GT:AD:DP:GQ:PL 0/1:140,154:294:99:3780,0,3296 12 6030405 rs3741903 A G 2588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.673;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.924;SOR=0.886 GT:AD:DP:GQ:PL 0/1:112,105:217:99:2617,0,2619 12 6054395 rs6489680 A G 4823.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4852,474,0 12 6061069 rs2270152 T G 771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.501;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.3;ReadPosRankSum=1.075;SOR=0.569 GT:AD:DP:GQ:PL 0/1:58,35:93:99:800,0,1479 12 6091000 rs216867 A G 2420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.95;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-1.785;SOR=0.618 GT:AD:DP:GQ:PL 0/1:92,95:187:99:2449,0,2577 12 6094784 rs1053523 T C 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.816;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.421;SOR=0.795 GT:AD:DP:GQ:PL 0/1:114,99:213:99:2296,0,2655 12 6094845 rs177702 G A 1345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=1.214;SOR=0.787 GT:AD:DP:GQ:PL 0/1:80,61:141:99:1374,0,1997 12 6127943 rs216310 A G 1887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.236;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.39;MQRankSum=-5.17;QD=8.35;ReadPosRankSum=-0.969;SOR=0.688 GT:AD:DP:GQ:PL 0/1:146,80:226:99:1916,0,3626 12 6128443 rs216311 T C 4276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.425;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.5;MQ=57.84;MQRankSum=-7.964;QD=13.75;ReadPosRankSum=0.383;SOR=0.773 GT:AD:DP:GQ:PL 0/1:151,160:311:99:4305,0,3659 12 6138595 rs1800380 C T 2387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=4.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.199;SOR=0.915 GT:AD:DP:GQ:PL 0/1:116,106:222:99:2416,0,2733 12 6143984 rs216321 T C 8286.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8315,849,0 12 6153514 rs1063857 A G 3015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=2.141;SOR=0.639 GT:AD:DP:GQ:PL 0/1:119,132:251:99:3044,0,2668 12 6153534 rs1063856 T C 3249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.052;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.262;SOR=0.685 GT:AD:DP:GQ:PL 0/1:111,130:241:99:3278,0,2409 12 6161963 rs10622633 G GAGA 7411.73 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=44.38;SOR=1.624 GT:AD:DP:GQ:PL 1/1:0,167:167:99:7449,502,0 12 6167196 rs1800379 A G 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.507;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-1.484;SOR=0.951 GT:AD:DP:GQ:PL 0/1:104,109:213:99:2807,0,2357 12 6172202 rs1800378 T C 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.393;SOR=0.55 GT:AD:DP:GQ:PL 0/1:78,80:158:99:1813,0,1777 12 6421495 rs740842 G A 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.216;SOR=0.874 GT:AD:DP:GQ:PL 0/1:90,85:175:99:1913,0,1992 12 6427052 rs1468603 C T 2101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.257;SOR=0.714 GT:AD:DP:GQ:PL 0/1:94,95:189:99:2130,0,2328 12 6495275 rs2364480 C A 3069.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3098,315,0 12 6500105 rs12354 T G 5250.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5279,512,0 12 6554628 rs25680 G A 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.077;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=0.325;SOR=0.856 GT:AD:DP:GQ:PL 0/1:104,74:178:99:1668,0,2775 12 6560473 rs2532502 A G 4964.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=28.86;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4993,515,0 12 6560573 rs1059501 G T 4853.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=29.78;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4882,487,0 12 6562753 rs2532501 A G 9619.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9648,930,0 12 6562810 rs2532500 A G 10952.8 PASS AC=2;AF=1;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,368:368:99:10981,1104,0 12 6567907 rs1045546 C T 3455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.477;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=4.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.539;SOR=0.957 GT:AD:DP:GQ:PL 0/1:144,150:294:99:3484,0,3144 12 6618871 rs7309414 C T 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.895;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.12;SOR=0.796 GT:AD:DP:GQ:PL 0/1:59,52:111:99:1278,0,1412 12 6619284 rs714774 C G 4112.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4141,420,0 12 6631169 rs917634 C A 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.345;SOR=0.585 GT:AD:DP:GQ:PL 0/1:84,76:160:99:1832,0,2068 12 6635274 rs10849482 G A 2010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.139;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.112;SOR=0.699 GT:AD:DP:GQ:PL 0/1:108,85:193:99:2039,0,2662 12 6635374 rs10849483 G A 2026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.15;SOR=0.686 GT:AD:DP:GQ:PL 0/1:101,79:180:99:2055,0,2881 12 6637845 rs2072374 T C 4931.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.135 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4960,464,0 12 6637941 rs10849484 C T 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-1.499;SOR=0.759 GT:AD:DP:GQ:PL 0/1:123,94:217:99:2181,0,3129 12 6639088 rs1043262 A G 5885.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.272 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5914,562,0 12 6639981 rs2240871 C G 3481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.648;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=7.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=2.282;SOR=0.576 GT:AD:DP:GQ:PL 0/1:117,121:238:99:3510,0,3077 12 6643991 rs1136666 C G 1122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.181;SOR=0.612 GT:AD:DP:GQ:PL 0/1:51,46:97:99:1151,0,1325 12 6646320 rs1065691 T C 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.25;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.308;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=2.643;SOR=0.736 GT:AD:DP:GQ:PL 0/1:54,67:121:99:1854,0,1493 12 6647109 rs1803621 T C 2037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.626;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=2.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.899;SOR=0.877 GT:AD:DP:GQ:PL 0/1:116,92:208:99:2066,0,2659 12 6711147 rs1639122 C A 2493.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.937;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.88;ReadPosRankSum=0.687;SOR=0.925 GT:AD:DP:GQ:PL 1/1:6,103:109:87:2522,87,0 12 6747578 rs1882553 G C 4383.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4412,417,0 12 6777069 rs3835029 TTGC T 2230.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.739;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.936;QD=14.3;ReadPosRankSum=-0.832;SOR=0.671 GT:AD:DP:GQ:PL 0/1:76,80:165:99:2268,0,2548 12 6840209 rs3168600 G A 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.81;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=5.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-0.73;SOR=0.582 GT:AD:DP:GQ:PL 0/1:83,88:171:99:2115,0,2100 12 6887020 rs870849 T C 4591.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4620,453,0 12 6938023 rs57050687 C CG 4994.73 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=37;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,135:135:99:5032,406,0 12 6939850 rs10744716 A G 6014.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.07;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,158:158:99:1|1:6939850_A_G:6043,474,0 12 6939859 rs35359746 C T 1717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=1.195;SOR=0.684 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,75:157:99:0|1:6939850_A_G:1746,0,2114 12 6942823 rs4963512 A G 3015.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3044,294,0 12 6946247 rs1129646 G T 863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.261;SOR=0.775 GT:AD:DP:GQ:PL 0/1:42,39:81:99:892,0,1056 12 6947196 rs78623250 C T 2863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.563;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=4.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=1.389;SOR=0.501 GT:AD:DP:GQ:PL 0/1:148,119:267:99:2892,0,3612 12 7026893 rs376463507 A AG 4240.73 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.54;QD=36.56;SOR=1.29 GT:AD:DP:GQ:PL 1/1:0,116:116:99:4278,348,0 12 7045891 . A ACAG 2007.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0;DP=320;ExcessHet=3.0103;FS=8.849;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.005;QD=10.35;ReadPosRankSum=1.433;SOR=0.649 GT:AD:DP:GQ:PL 0/1:105,89:211:99:2045,0,3680 12 7047143 rs7969685 C A 2110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.045;SOR=0.793 GT:AD:DP:GQ:PL 0/1:89,85:174:99:2139,0,2263 12 7053908 rs744167 C T 2618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.637;SOR=0.888 GT:AD:DP:GQ:PL 0/1:103,99:202:99:2647,0,2722 12 7061129 rs370185964 C T 1535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.297;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=2.722;SOR=0.806 GT:AD:DP:GQ:PL 0/1:67,60:127:99:1564,0,1706 12 7065576 rs2110071 G A 6446.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6475,609,0 12 7065635 rs2110072 T C 8103.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,252:252:99:8132,756,0 12 7069422 rs35119590 TG T 80.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=12.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.54;ReadPosRankSum=0.078;SOR=0.155 GT:AD:DP:GQ:PL 0/1:129,20:153:99:118,0,3405 12 7080210 rs60117710 A AG 6381.73 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=44.32;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,144:144:99:1|1:7080210_A_AG:6419,433,0 12 7080212 rs17857448 T C 6390.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.32;SOR=0.926 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,141:141:99:1|1:7080210_A_AG:6419,433,0 12 7287914 rs2278822 C T 3417.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=1.589 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3446,351,0 12 7343108 . GGCCTCTGAGGCAGTGAGTGTTCTTGAGGTGGAAAGCCCAGGTGCA G 936.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.047;ClippingRankSum=0;DP=265;ExcessHet=3.0103;FS=8.158;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-3.003;QD=11.29;ReadPosRankSum=-0.06;SOR=0.782 GT:AD:DP:GQ:PL 0/1:57,26:83:99:974,0,2763 12 7463241 rs7968241 A T 8343.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8372,852,0 12 7521563 rs148414953 TGA T 354.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=2.315;QD=3.41;ReadPosRankSum=-1.264;SOR=0.447 GT:AD:DP:GQ:PL 0/1:84,20:116:99:392,0,2698 12 7551022 rs6488268 A T 5911.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5940,600,0 12 7551050 rs6488269 A C 6089.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6118,604,0 12 7585971 rs10845159 A G 2972.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=1.354 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3001,285,0 12 7638020 rs10743939 G A 1195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.442;SOR=0.638 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1224,0,1310 12 7649484 rs4883263 T C 4187.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4216,393,0 12 7649653 rs4883264 T C 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-1.335;SOR=0.689 GT:AD:DP:GQ:PL 0/1:69,60:129:99:1361,0,1736 12 7655137 rs3210140 A G 625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.879;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=-0.555;SOR=0.544 GT:AD:DP:GQ:PL 0/1:35,30:65:99:654,0,747 12 7803646 rs10431309 G A 3230.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3259,345,0 12 7805236 rs2302515 C G 5116.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.59;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5145,471,0 12 7842932 rs12819884 C T 3343.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.63;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.771;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.86;ReadPosRankSum=1.694;SOR=0.798 GT:AD:DP:GQ:PL 1/1:1,111:112:99:3372,298,0 12 7868777 rs34619457 A AT 452.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.116;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=-0.401;SOR=0.764 GT:AD:DP:GQ:PL 0/1:28,22:50:99:490,0,598 12 7894056 rs73056605 G A 658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=-0.597;SOR=0.573 GT:AD:DP:GQ:PL 0/1:45,34:79:99:687,0,1032 12 7894132 rs80204298 GA G 529.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.887;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=0.38;SOR=0.784 GT:AD:DP:GQ:PL 0/1:18,19:37:99:567,0,510 12 7945559 rs4294629 T C 3511.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.64;QD=30.02;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3540,351,0 12 7945640 rs2889551 G T 2951.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.31;QD=30.75;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2980,288,0 12 7945670 rs4354764 G A 2575.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.17;QD=35.28;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2604,219,0 12 7945757 rs4438116 C T 1196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.5;MQ=53.62;MQRankSum=0.194;QD=10.88;ReadPosRankSum=1.024;SOR=0.581 GT:AD:DP:GQ:PL 0/1:57,53:110:99:1225,0,1369 12 7947304 rs4012939 T C 2865.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.73;QD=30.81;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2894,279,0 12 7947571 rs4012937 C T 811.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=5.419;MLEAC=1;MLEAF=0.5;MQ=28.23;MQRankSum=-0.357;QD=18.04;ReadPosRankSum=1.328;SOR=0.191 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,32:45:99:1|0:7947563_G_C:840,0,296 12 7966975 rs10845982 C T 979.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=6.489;MLEAC=1;MLEAF=0.5;MQ=55.15;MQRankSum=-13.754;QD=4.58;ReadPosRankSum=1.463;SOR=1.129 GT:AD:DP:GQ:PL 0/1:155,59:214:99:1008,0,3804 12 7967076 rs10845983 A G 1899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=4.431;MLEAC=1;MLEAF=0.5;MQ=55.58;MQRankSum=-6.559;QD=10.73;ReadPosRankSum=-1.21;SOR=0.436 GT:AD:DP:GQ:PL 0/1:94,83:177:99:1928,0,2297 12 8043688 rs7297809 G C 1857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=0.501;SOR=0.525 GT:AD:DP:GQ:PL 0/1:63,73:136:99:1886,0,1575 12 8074055 rs199523896 T C 747.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=7.716;MLEAC=1;MLEAF=0.5;MQ=57.52;MQRankSum=-15.16;QD=2.11;ReadPosRankSum=0.313;SOR=0.793 GT:AD:DP:GQ:PL 0/1:289,65:354:99:776,0,7407 12 8074192 rs25684 G A 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.685;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=6.88;MLEAC=1;MLEAF=0.5;MQ=58.33;MQRankSum=0.925;QD=9.09;ReadPosRankSum=0.433;SOR=1.122 GT:AD:DP:GQ:PL 0/1:139,85:224:99:2065,0,3482 12 8278181 rs2024301 A T 533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.016;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.21;ReadPosRankSum=-2.612;SOR=0.585 GT:AD:DP:GQ:PL 0/1:41,24:65:99:562,0,1017 12 8327883 rs201454011 C T 620.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.631;ClippingRankSum=0;DB;DP=469;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.37;MQRankSum=-0.908;QD=1.33;ReadPosRankSum=2.021;SOR=0.672 GT:AD:DP:GQ:PL 0/1:384,84:468:99:649,0,10424 12 8327888 rs184908955 A G 618.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DB;DP=464;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.5;MQ=38.41;MQRankSum=-1.077;QD=1.34;ReadPosRankSum=-0.754;SOR=0.857 GT:AD:DP:GQ:PL 0/1:382,81:463:99:647,0,10242 12 8329652 rs10743251 A G 4092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.955;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=5.073;MLEAC=1;MLEAF=0.5;MQ=55.51;MQRankSum=-6.364;QD=12.75;ReadPosRankSum=-1.407;SOR=0.966 GT:AD:DP:GQ:PL 0/1:162,159:321:99:4121,0,3936 12 8329676 rs10743252 C T 4145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.5;MQ=57.77;MQRankSum=-6.723;QD=11.71;ReadPosRankSum=1.635;SOR=0.846 GT:AD:DP:GQ:PL 0/1:181,173:354:99:4174,0,4406 12 8329700 rs10743253 A C 4969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.66;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=0.77;MLEAC=1;MLEAF=0.5;MQ=58.69;MQRankSum=-5.904;QD=13.01;ReadPosRankSum=1.793;SOR=0.742 GT:AD:DP:GQ:PL 0/1:182,200:382:99:4998,0,4363 12 8329833 rs11043758 G A 3562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.965;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=18.858;MLEAC=1;MLEAF=0.5;MQ=55.49;MQRankSum=-7.262;QD=10.06;ReadPosRankSum=0.261;SOR=0.978 GT:AD:DP:GQ:PL 0/1:209,145:354:99:3591,0,5272 12 8330192 rs11043759 T C 2088.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.744;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=7.351;MLEAC=1;MLEAF=0.5;MQ=54.28;MQRankSum=-12.789;QD=7.62;ReadPosRankSum=1.077;SOR=1.127 GT:AD:DP:GQ:PL 0/1:180,94:274:99:2117,0,4464 12 8374770 rs9668474 G A 7394.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.71;QD=27.8;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,266:266:99:7423,796,0 12 8374781 rs71265055 C CACG 5323.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.548;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.19;MQRankSum=-0.138;QD=19.94;ReadPosRankSum=0.858;SOR=0.678 GT:AD:DP:GQ:PL 0/1:133,134:267:99:5361,0,5135 12 8374812 rs17855656 G A 2841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.061;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.5;MQ=58.62;MQRankSum=0.501;QD=11.99;ReadPosRankSum=0.448;SOR=0.813 GT:AD:DP:GQ:PL 0/1:123,114:237:99:2870,0,3117 12 8375048 rs17857270 G T 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.629;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=5.213;MLEAC=1;MLEAF=0.5;MQ=54.76;MQRankSum=-11.889;QD=9.17;ReadPosRankSum=-0.015;SOR=1.064 GT:AD:DP:GQ:PGT:PID:PL 0/1:120,46:166:99:0|1:8375048_G_T:1550,0,5466 12 8375052 rs17857269 A G 1538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.013;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=4.136;MLEAC=1;MLEAF=0.5;MQ=54.74;MQRankSum=-11.755;QD=9.44;ReadPosRankSum=-0.525;SOR=1.063 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,46:163:99:0|1:8375048_G_T:1567,0,5435 12 8375112 rs9668582 G T 1763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.369;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.226;MLEAC=1;MLEAF=0.5;MQ=56.78;MQRankSum=-8.969;QD=8.91;ReadPosRankSum=-1.6;SOR=1.028 GT:AD:DP:GQ:PL 0/1:123,75:198:99:1792,0,3150 12 8376110 rs9738115 T C 2804.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.07;QD=28.05;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2833,299,0 12 8377439 rs143933471 TG T 2231.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=-0.643;QD=15.83;ReadPosRankSum=0.162;SOR=0.604 GT:AD:DP:GQ:PL 0/1:80,61:141:99:2269,0,2152 12 8377445 rs186016880 T C 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.542;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.5;MQ=58.36;MQRankSum=-0.571;QD=9.5;ReadPosRankSum=0.424;SOR=0.597 GT:AD:DP:GQ:PL 0/1:81,59:140:99:1358,0,4024 12 8667897 rs4304840 A G 1159.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.21;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1188,136,0 12 8757481 rs2028373 G A 1075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.214;QD=8.03;ReadPosRankSum=0.346;SOR=0.655 GT:AD:DP:GQ:PL 0/1:79,55:134:99:1104,0,1782 12 8757522 rs5796316 C CA 1275.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.347;QD=22;ReadPosRankSum=2.626;SOR=0.88 GT:AD:DP:GQ:PL 1/1:6,52:74:29:1267,29,0 12 8926011 rs2969089 T C 4176.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4205,411,0 12 8995966 rs7136813 G A 2145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.515;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=6.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=1.566;SOR=1.202 GT:AD:DP:GQ:PL 0/1:89,84:173:99:2174,0,2149 12 9004512 rs1860927 G A 5677.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5706,589,0 12 9004892 rs1860926 C A 6233.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6262,638,0 12 9013755 rs1860967 C T 5000.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5029,506,0 12 9016573 rs10219561 A G 6692.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6721,632,0 12 9020489 rs7308811 A G 5270.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5299,541,0 12 9020912 rs1476910 A G 1860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.729;SOR=0.779 GT:AD:DP:GQ:PL 0/1:96,75:171:99:1889,0,2267 12 9070366 rs4883198 T A 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=58.95;MQRankSum=-2.962;QD=12.1;ReadPosRankSum=0.916;SOR=0.798 GT:AD:DP:GQ:PL 0/1:43,48:91:99:1129,0,986 12 9074259 rs1805741 C T 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.5;MQRankSum=0.234;QD=10.71;ReadPosRankSum=-2.521;SOR=0.655 GT:AD:DP:GQ:PL 0/1:86,82:168:99:1827,0,1954 12 9083336 rs1805777 A G 765.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.11;QD=38.29;SOR=2.531 GT:AD:DP:GQ:PL 1/1:0,20:20:60:794,60,0 12 9090668 rs3026261 C T 834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.27;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-0.805;QD=14.39;ReadPosRankSum=1.695;SOR=0.438 GT:AD:DP:GQ:PL 0/1:24,34:58:99:863,0,642 12 9098995 rs149871778 G GAAC 1813.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.331;QD=20.38;ReadPosRankSum=-0.564;SOR=0.483 GT:AD:DP:GQ:PL 0/1:41,48:89:99:1851,0,1578 12 9232268 rs669 T C 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.752;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=-1.586;SOR=0.817 GT:AD:DP:GQ:PL 0/1:59,84:143:99:2168,0,1381 12 9248233 rs226405 T C 3183.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3212,336,0 12 9305473 rs10771357 T C 3670.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3699,345,0 12 9307373 rs2377741 T G 8988.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.153 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9017,919,0 12 9312951 rs57006764 G A 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=1.1;SOR=0.72 GT:AD:DP:GQ:PL 0/1:73,63:136:99:1464,0,1822 12 9315209 rs10771381 A G 1200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.564;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=1.359;SOR=0.651 GT:AD:DP:GQ:PL 0/1:45,50:95:99:1229,0,1055 12 9316773 rs3213831 T C 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=7.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.167;SOR=1.01 GT:AD:DP:GQ:PL 0/1:67,68:135:99:1708,0,1643 12 9317784 rs2277413 A G 3076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.281;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.5;MQ=54.45;MQRankSum=0.165;QD=11.61;ReadPosRankSum=0.242;SOR=0.859 GT:AD:DP:GQ:PL 0/1:140,125:265:99:3105,0,3034 12 9317885 rs2277412 G A 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.534;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.5;MQ=51.93;MQRankSum=-1.921;QD=9.77;ReadPosRankSum=-3.561;SOR=0.743 GT:AD:DP:GQ:PL 0/1:105,65:170:99:1689,0,2585 12 9334728 rs3832849 G GAGTGAGACAAAATGGTCATA 4669.73 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=64.67;QD=40.26;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,116:116:99:4707,340,0 12 9345273 rs10771407 A G 6103.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6132,614,0 12 9688883 rs2536903 A C 5081.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.16;QD=29.55;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5110,515,0 12 9697765 rs145716121 T C 1655.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.08;QD=33.12;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1684,150,0 12 9698174 rs34158342 C CT 4776.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=2.578;MLEAC=2;MLEAF=1;MQ=55.51;MQRankSum=0.438;QD=27.77;ReadPosRankSum=-1.423;SOR=0.237 GT:AD:DP:GQ:PL 1/1:3,169:179:99:4814,457,0 12 9707098 rs7309655 C T 2685.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.61;QD=33.16;SOR=2.055 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2714,243,0 12 9711954 rs2536846 A T 4136.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42;QD=31.34;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4165,396,0 12 9750669 rs1135816 A G 1815.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1844,177,0 12 9833524 rs3764022 C G 612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.645;SOR=0.826 GT:AD:DP:GQ:PL 0/1:23,25:48:99:641,0,587 12 9833628 rs3764021 C T 677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.1;SOR=0.346 GT:AD:DP:GQ:PL 0/1:20,32:52:99:706,0,454 12 9847448 rs138893047 C T 648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=-0.73;SOR=0.667 GT:AD:DP:GQ:PL 0/1:17,29:46:99:677,0,436 12 9885526 rs12304510 C T 499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.93;ReadPosRankSum=-0.67;SOR=1.122 GT:AD:DP:GQ:PL 0/1:41,22:63:99:528,0,1125 12 9885707 rs113222621 A ATAAGT 1778.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.059;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.348;QD=13.08;ReadPosRankSum=1.141;SOR=0.831 GT:AD:DP:GQ:PL 0/1:87,49:136:99:1816,0,5820 12 9906067 rs1051065 T C 1466.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1495,147,0 12 9980243 rs2232543 A G 1385.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1414,147,0 12 9994445 rs33911869 GTGT G 2977.73 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.44;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,67:67:99:3015,202,0 12 10015082 rs253147 G A 518.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,17:17:51:547,51,0 12 10015177 rs253146 A G 471.77 PASS AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,15:15:45:500,45,0 12 10041364 rs1797517 G A 1469.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.22;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1498,162,0 12 10069302 rs526680 C T 683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-0.873;SOR=0.867 GT:AD:DP:GQ:PL 0/1:36,32:68:99:712,0,960 12 10137557 rs479499 A C 666.77 PASS AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,24:24:72:695,72,0 12 10137645 rs588272 T G 229.8 PASS AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=2.584 GT:AD:DP:GQ:PL 1/1:0,7:7:21:258,21,0 12 10149851 rs583903 C T 3475.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3504,351,0 12 10151642 rs612593 T C 1448.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.45;QD=30.18;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1477,144,0 12 10151715 rs76016091 G A 1022.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.6;QD=28.41;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1051,108,0 12 10165469 rs476474 A G 2799.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2828,282,0 12 10167277 rs637790 G C 4178.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4207,416,0 12 10217326 rs10622534 C CTT 6073.73 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=44.33;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,137:137:99:6111,412,0 12 10241829 rs2277416 G T 4297.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4326,453,0 12 10251445 rs2306894 C G 3690.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3719,380,0 12 10271055 rs7959451 T C 3064.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3093,305,0 12 10271087 rs16910526 A C 3595.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,117:119:99:3624,351,0 12 10373324 rs7301041 T A 3060.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3089,302,0 12 10462052 rs10772256 T G 1101.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1130,105,0 12 10525740 rs1049172 C T 3181.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3210,315,0 12 10532326 rs2255336 T C 3970.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3999,398,0 12 10560957 rs2617170 T C 630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=4.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=0.598;SOR=0.293 GT:AD:DP:GQ:PL 0/1:17,26:43:99:659,0,395 12 10562025 rs1841957 C T 1289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.455;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.05;QD=12.77;ReadPosRankSum=1.027;SOR=0.787 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1318,0,1287 12 10562089 rs1841958 A C 1988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.523;SOR=0.501 GT:AD:DP:GQ:PL 0/1:89,81:170:99:2017,0,2173 12 10570965 rs2682495 C G 4237.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.256 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4266,403,0 12 10571042 rs2741882 A G 5372.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.69;QD=30.18;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5401,534,0 12 10571091 rs2682494 T G 6691.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.64;QD=42.9;SOR=1.261 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,156:156:99:1|1:10571091_T_G:6720,475,0 12 10571106 rs2682493 G C 6063.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.86;QD=44.26;SOR=1.476 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,137:137:99:1|1:10571091_T_G:6092,412,0 12 10572544 rs143188402 T C 92.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.19;QD=30.76;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:120,9,0 12 10572982 rs2741881 A G 3595.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.36;QD=32.11;SOR=1.674 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3624,336,0 12 10573094 rs2682491 C G 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.679;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.5;MQ=47.06;MQRankSum=0.096;QD=9.39;ReadPosRankSum=-0.391;SOR=0.9 GT:AD:DP:GQ:PL 0/1:72,52:124:99:1193,0,1724 12 10573095 rs2682490 A G 4452.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.01;QD=36.2;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4481,369,0 12 10573145 rs2682489 C T 1092.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.077;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=32.442;MLEAC=1;MLEAF=0.5;MQ=37.71;MQRankSum=1.314;QD=14.97;ReadPosRankSum=-2.171;SOR=3.806 GT:AD:DP:GQ:PL 0/1:35,38:73:99:1121,0,632 12 10587111 rs61917677 A G 2859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=58.23;MQRankSum=-2.131;QD=20.14;ReadPosRankSum=-0.19;SOR=0.553 GT:AD:DP:GQ:PL 0/1:26,116:142:99:2888,0,400 12 10588530 rs75545535 C G 766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=6.552;MLEAC=1;MLEAF=0.5;MQ=55.8;MQRankSum=-0.195;QD=2.21;ReadPosRankSum=0.215;SOR=1.046 GT:AD:DP:GQ:PL 0/1:280,67:347:99:795,0,7152 12 10588581 rs28403159 T C 1097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=9.814;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.5;MQ=52.53;MQRankSum=-10.182;QD=3.17;ReadPosRankSum=0.175;SOR=0.977 GT:AD:DP:GQ:PL 0/1:290,56:346:99:1126,0,7004 12 10603670 rs2253849 T C 4558.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4587,463,0 12 10763236 rs10845182 G C 200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.57;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=3.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.74;ReadPosRankSum=0.993;SOR=1.409 GT:AD:DP:GQ:PL 0/1:23,12:35:99:229,0,499 12 10782115 rs3759259 T C 5925.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,202:202:99:5954,605,0 12 10871667 rs33016 A G 2582.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2611,272,0 12 10875488 rs1126501 T C 3958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.511;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=7.417;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.493;QD=12.98;ReadPosRankSum=1.595;SOR=1.081 GT:AD:DP:GQ:PL 0/1:161,144:305:99:3987,0,3938 12 10958658 rs2537817 T C 3044.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3073,313,0 12 10959031 rs1548803 C T 3962.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3991,398,0 12 10962115 rs3741845 A G 4897.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4926,473,0 12 10978402 rs597468 G A 3441.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3470,336,0 12 10998556 rs71434160 C CA 542.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=4.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=2.283;SOR=0.208 GT:AD:DP:GQ:PL 0/1:14,25:47:99:580,0,233 12 10999708 rs1047699 T C 7364.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7393,746,0 12 10999780 rs1063193 C T 8709.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,312:312:99:8738,930,0 12 11035274 rs28607516 G T 3177.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.54;QD=32.76;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3206,291,0 12 11061122 rs1015443 T C 4365.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.33;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4394,392,0 12 11083356 rs116998526 A G 4764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.725;ClippingRankSum=0;DB;DP=736;ExcessHet=3.0103;FS=2.78;MLEAC=1;MLEAF=0.5;MQ=56.95;MQRankSum=-5.09;QD=6.47;ReadPosRankSum=-5.176;SOR=0.912 GT:AD:DP:GQ:PL 0/1:510,226:736:99:4793,0,13882 12 11083677 rs10772391 T C 4378.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.1;QD=33.68;SOR=1.779 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4407,389,0 12 11091432 rs3741843 C T 4542.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4571,441,0 12 11138683 rs10772397 C T 7102.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7131,725,0 12 11138852 rs1376251 C T 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=2.097;SOR=0.745 GT:AD:DP:GQ:PL 0/1:158,118:276:99:2489,0,3975 12 11149532 rs1450839 A G 863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=1.21;SOR=0.465 GT:AD:DP:GQ:PL 0/1:52,37:89:99:892,0,1368 12 11149711 rs10845279 C A 3741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.901;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=5.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.99;ReadPosRankSum=3.141;SOR=1.027 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,95:197:99:0|1:11149711_C_A:3770,0,4354 12 11149720 rs10845280 A G 3758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.942;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=8.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.28;ReadPosRankSum=2.524;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,98:195:99:0|1:11149711_C_A:3787,0,4254 12 11149769 rs10845281 T C 3544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.135;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-1.815;SOR=0.762 GT:AD:DP:GQ:PL 0/1:119,145:264:99:3573,0,2792 12 11150033 rs12226919 G T 1409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.42;ReadPosRankSum=-1.617;SOR=0.706 GT:AD:DP:GQ:PL 0/1:121,69:190:99:1438,0,3033 12 11150046 rs12226920 G T 1567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.92;ReadPosRankSum=-0.867;SOR=0.714 GT:AD:DP:GQ:PL 0/1:124,74:198:99:1596,0,3114 12 11150214 rs11054142 G A 1861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.896;SOR=0.838 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1890,0,1868 12 11150319 rs11054143 T C 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=1.315;SOR=0.486 GT:AD:DP:GQ:PL 0/1:75,84:159:99:1892,0,1830 12 11174276 rs10772420 G A 98.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.268;ClippingRankSum=-0;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=9.88;ReadPosRankSum=-2.128;SOR=0.412 GT:AD:DP:GQ:PL 0/1:6,4:10:99:127,0,205 12 11174753 rs1868769 G A 237.8 PASS AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.48;QD=33.97;SOR=2.584 GT:AD:DP:GQ:PL 1/1:0,7:7:21:266,21,0 12 11183108 rs12318612 G C 5597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=463;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=57.05;MQRankSum=-4.236;QD=12.09;ReadPosRankSum=1.534;SOR=0.72 GT:AD:DP:GQ:PL 0/1:235,228:463:99:5626,0,5887 12 11183217 rs10772423 C T 4671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.205;ClippingRankSum=0;DB;DP=438;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.09;MQRankSum=-10.104;QD=10.67;ReadPosRankSum=0.189;SOR=0.718 GT:AD:DP:GQ:PL 0/1:253,185:438:99:4700,0,6228 12 11183255 rs10845293 G A 4901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0;DB;DP=508;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.35;MQRankSum=-7.379;QD=9.65;ReadPosRankSum=-2.025;SOR=0.708 GT:AD:DP:GQ:PL 0/1:294,214:508:99:4930,0,7296 12 11183286 rs10845294 G C 5747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.609;ClippingRankSum=0;DB;DP=541;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=59.4;MQRankSum=-6.788;QD=10.62;ReadPosRankSum=-0.343;SOR=0.759 GT:AD:DP:GQ:PL 0/1:304,237:541:99:5776,0,7785 12 11183451 rs10743938 A T 11498.8 PASS AC=2;AF=1;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,376:376:99:11527,1127,0 12 11183832 rs10845295 G A 4743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=427;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.158;SOR=0.709 GT:AD:DP:GQ:PL 0/1:221,206:427:99:4772,0,5242 12 11214212 rs2708380 A T 4615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.226;ClippingRankSum=0;DB;DP=419;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.059;QD=11.04;ReadPosRankSum=-1.155;SOR=0.848 GT:AD:DP:GQ:PL 0/1:222,196:418:99:4644,0,5194 12 11214360 rs73260771 C T 3881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.183;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=0.457;SOR=0.716 GT:AD:DP:GQ:PL 0/1:121,149:270:99:3910,0,2892 12 11244166 rs35720106 G C 6265.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.79;QD=31.17;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6294,602,0 12 11244194 rs71443637 T C 5948.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=31.47;SOR=1.018 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5977,566,0 12 11244725 rs68157013 C G 5339.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=31.41;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5368,510,0 12 11286088 rs2599404 A C 4041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.363;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=0.039;SOR=0.887 GT:AD:DP:GQ:PL 0/1:144,156:300:99:4070,0,3577 12 11286790 rs2600355 A C 2534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.832;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=7.227;MLEAC=1;MLEAF=0.5;MQ=56.9;MQRankSum=-7.311;QD=12.8;ReadPosRankSum=0.69;SOR=1.179 GT:AD:DP:GQ:PL 0/1:107,91:198:99:2563,0,2585 12 11323939 rs7488095 G C 2961.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.28;SOR=1.408 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2990,266,0 12 11323994 rs7488102 G A 4267.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4296,420,0 12 11324176 rs2416548 C A 2554.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=1.347 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2583,252,0 12 11338613 rs1650017 C G 3850.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.78;SOR=1.127 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,86:86:99:1|1:11338613_C_G:3879,262,0 12 11338614 rs1669411 A G 3850.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.26;SOR=1.09 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,87:87:99:1|1:11338613_C_G:3879,262,0 12 11338781 rs1669413 C A 4215.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4244,434,0 12 11338957 rs5020531 A G 2842.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.3;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2871,264,0 12 11338983 rs1650019 T C 2836.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.99;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2865,258,0 12 11339020 rs35969491 T A 2562.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.72;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2591,228,0 12 11421093 rs61463237 T TGGG 14040.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.827;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.56;MQRankSum=1.959;QD=42.94;ReadPosRankSum=1.538;SOR=0.368 GT:AD:DP:GQ:PL 1/1:2,325:327:99:14078,911,0 12 11461292 rs1052808 C G 18062.8 PASS AC=2;AF=1;AN=2;DB;DP=589;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=30.72;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,588:588:99:18091,1764,0 12 11461836 rs6488386 T C 11204.8 PASS AC=2;AF=1;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.56;QD=33.75;SOR=1.574 GT:AD:DP:GQ:PL 1/1:0,332:332:99:11233,996,0 12 11506211 rs76504934 A C 16447.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.946;ClippingRankSum=0;DB;DP=548;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.1;MQRankSum=1.191;QD=30.07;ReadPosRankSum=-0.592;SOR=0.235 GT:AD:DP:GQ:PL 1/1:1,546:547:99:16476,1626,0 12 11506347 rs371841290 G A 4754.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.16;MQRankSum=0.363;QD=28.3;ReadPosRankSum=1.727;SOR=1.275 GT:AD:DP:GQ:PL 1/1:3,165:168:99:4783,449,0 12 11506893 rs10845341 C T 16330.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0;DB;DP=585;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.94;MQRankSum=-0.31;QD=28.16;ReadPosRankSum=1.443;SOR=0.315 GT:AD:DP:GQ:PL 1/1:1,579:582:99:16359,1696,0 12 11546192 rs10845349 G A 3759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.5;MQ=52.15;MQRankSum=-0.046;QD=8.81;ReadPosRankSum=-1.733;SOR=0.573 GT:AD:DP:GQ:PL 0/1:234,193:427:99:3788,0,5400 12 12022496 rs145477191 T C 3152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.478;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=2.206;SOR=0.679 GT:AD:DP:GQ:PL 0/1:132,131:263:99:3181,0,3212 12 12301898 rs2302685 C T 3173.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3202,324,0 12 12334006 rs10082834 G C 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=-1.14;SOR=0.716 GT:AD:DP:GQ:PL 0/1:57,71:128:99:1768,0,1459 12 12336966 rs7978064 A G 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.86;ReadPosRankSum=-0.813;SOR=0.562 GT:AD:DP:GQ:PL 0/1:62,41:103:99:838,0,1477 12 12337061 rs11829211 C T 272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.5;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.5;ReadPosRankSum=-0.712;SOR=0.747 GT:AD:DP:GQ:PL 0/1:59,19:78:99:301,0,1585 12 12483030 rs75750739 C T 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.214;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-0.188;SOR=0.949 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1623,0,1962 12 12483275 rs1861676 G A 5213.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5242,510,0 12 12483318 rs3741801 C T 2320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=3.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.4;SOR=0.507 GT:AD:DP:GQ:PL 0/1:96,98:194:99:2349,0,2399 12 12483713 rs4763282 A G 4097.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4126,398,0 12 12483764 rs17375215 C T 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=-0.437;SOR=0.892 GT:AD:DP:GQ:PL 0/1:78,64:142:99:1332,0,1768 12 12496011 rs3741799 G T 833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=4.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.228;SOR=1.316 GT:AD:DP:GQ:PL 0/1:34,35:69:99:862,0,810 12 12618690 rs3751262 G A 2499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=3.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=1.575;SOR=0.903 GT:AD:DP:GQ:PL 0/1:111,107:220:99:2528,0,2770 12 12618715 rs967648 T C 5575.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.367 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5604,555,0 12 12814818 rs4763862 C T 5215.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5244,507,0 12 12870695 rs34330 T C 7596.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.89;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7625,693,0 12 12871099 rs2066827 T G 3319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.821;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=0.666;SOR=0.621 GT:AD:DP:GQ:PL 0/1:130,125:255:99:3348,0,3226 12 12871199 rs149775942 G A 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-1.637;SOR=0.557 GT:AD:DP:GQ:PL 0/1:80,69:149:99:1507,0,2113 12 12967127 rs1051374 C T 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.3;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-1.666;SOR=0.826 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,33:68:99:1|0:12967111_C_A:748,0,823 12 12980326 rs12306594 T A 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.022;SOR=0.939 GT:AD:DP:GQ:PL 0/1:59,47:106:99:1129,0,1541 12 13102605 rs4630382 G A 3940.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3969,375,0 12 13214537 rs3741818 A G 4333.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=1.428 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4362,411,0 12 13221606 rs1386005 T C 2272.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2301,213,0 12 13715975 rs1805247 A G 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.923;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.424;SOR=0.795 GT:AD:DP:GQ:PL 0/1:87,69:156:99:1777,0,2165 12 13716638 rs1806191 G A 2666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.706;SOR=0.762 GT:AD:DP:GQ:PL 0/1:87,110:197:99:2695,0,2251 12 13764774 rs1805482 G A 1258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-2.001;SOR=1.044 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1287,0,1359 12 14577892 rs2231909 A T 1162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.107;SOR=0.537 GT:AD:DP:GQ:PL 0/1:50,49:99:99:1191,0,1192 12 14587301 rs3213764 A G 442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.868;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.186;SOR=1.085 GT:AD:DP:GQ:PL 0/1:22,17:39:99:471,0,639 12 14591220 rs4479040 G A 597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.42;ReadPosRankSum=0.499;SOR=0.452 GT:AD:DP:GQ:PL 0/1:44,27:71:99:626,0,1184 12 14599904 rs5796595 C CT 869.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.267;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=2.027;MLEAC=2;MLEAF=1;MQ=60.48;MQRankSum=0.503;QD=19.33;ReadPosRankSum=0.24;SOR=0.336 GT:AD:DP:GQ:PL 1/1:4,41:45:42:907,42,0 12 14656768 rs1600 G C 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=1.132;SOR=0.763 GT:AD:DP:GQ:PL 0/1:90,76:166:99:1726,0,2290 12 14664595 rs10846013 A G 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.342;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.216;SOR=0.993 GT:AD:DP:GQ:PL 0/1:73,70:143:99:1686,0,1756 12 14688644 rs7957558 C T 3946.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3975,414,0 12 14720554 rs149862451 GGCA G 10420.7 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.38;QD=44.16;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,236:245:99:10458,697,0 12 14720583 rs7954623 T C 8619.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=30.9;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8648,837,0 12 14794062 rs10772800 G A 3243.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3272,333,0 12 14829893 rs1420635 A C 773.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,27:27:81:802,81,0 12 14834421 rs56944147 GA G 3061.73 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=68.29;QD=43.12;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,71:71:99:1|1:14834421_GA_G:3099,214,0 12 14834427 rs58911033 G T 3070.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=68.95;QD=43.25;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,71:71:99:1|1:14834421_GA_G:3099,214,0 12 14947675 rs34868934 TA T 830.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.78;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.743;QD=8.14;ReadPosRankSum=-1.886;SOR=0.453 GT:AD:DP:GQ:PL 0/1:53,49:107:99:868,0,1206 12 14976497 rs61920259 T C 1590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.982;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.323;SOR=0.671 GT:AD:DP:GQ:PL 0/1:83,61:144:99:1619,0,1945 12 14993439 rs11276 C T 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.24;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=6.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.697;SOR=1.019 GT:AD:DP:GQ:PL 0/1:100,90:190:99:2233,0,2486 12 14993608 rs3088189 G A 2706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=3.919;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=0;QD=13.14;ReadPosRankSum=2.452;SOR=0.664 GT:AD:DP:GQ:PL 0/1:95,111:206:99:2735,0,2402 12 14993854 rs1861698 A G 2161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.193;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.339;SOR=0.807 GT:AD:DP:GQ:PL 0/1:104,86:190:99:2190,0,2541 12 15035081 rs4236 T C 2128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.49;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=5.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.31;ReadPosRankSum=-0.192;SOR=1.153 GT:AD:DP:GQ:PL 0/1:45,78:123:99:2157,0,1008 12 15037187 rs11393307 T TA 260.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.263;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=0.459;SOR=1.179 GT:AD:DP:GQ:PL 0/1:16,14:30:99:298,0,294 12 15081897 rs2445371 A C 4270.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.83;SOR=1.274 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,110:110:99:1|1:15081897_A_C:4299,330,0 12 15081898 rs11056243 G A 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=1.172;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 0/1:56,55:111:99:0|1:15081897_A_C:1410,0,1553 12 15095558 rs4703 C G 5474.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.08;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5503,584,0 12 15103605 rs2430711 A G 4567.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4596,438,0 12 15262179 rs1055151 G A 2209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.538;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.441;SOR=0.666 GT:AD:DP:GQ:PL 0/1:86,92:178:99:2238,0,2281 12 15656832 rs4764199 T A 3004.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3033,308,0 12 15679120 rs6488782 C A 1081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.589;SOR=0.612 GT:AD:DP:GQ:PL 0/1:51,46:97:99:1110,0,1312 12 15679208 rs7134888 G A 609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.49;ReadPosRankSum=-0.025;SOR=0.822 GT:AD:DP:GQ:PL 0/1:78,33:111:99:638,0,2132 12 15794695 rs149455769 G A 796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.055;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.53;SOR=0.851 GT:AD:DP:GQ:PL 0/1:30,35:65:99:825,0,684 12 16050808 rs10772879 T A 2021.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.793 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2050,197,0 12 16055926 rs71042275 G GT 2990.73 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.92;SOR=2.777 GT:AD:DP:GQ:PL 1/1:0,81:81:99:3028,244,0 12 16185463 rs57961487 CTT C 2728.73 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.21;QD=40.13;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2766,205,0 12 16347308 rs3942536 G A 3019.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.22;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3048,320,0 12 16369828 rs1671511 A T 4071.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4100,401,0 12 16397677 rs1527014 G A 6001.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6030,612,0 12 16397746 rs1852451 C T 4375.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=1.355 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4404,447,0 12 16430284 rs1671487 G A 2918.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2947,282,0 12 16713487 rs3214385 A AT 1680.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.09;ReadPosRankSum=1.88;SOR=0.577 GT:AD:DP:GQ:PL 1/1:5,62:80:99:1633,131,0 12 18234256 rs941048 T C 2421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=1.743;SOR=0.725 GT:AD:DP:GQ:PL 0/1:72,102:174:99:2450,0,1673 12 18234422 rs11043839 C A 663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.301;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=3.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.81;ReadPosRankSum=-0.845;SOR=1.079 GT:AD:DP:GQ:PL 0/1:54,31:85:99:692,0,1282 12 18435398 rs35277916 GCCC G 922.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.796;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-0.103;SOR=0.813 GT:AD:DP:GQ:PL 0/1:44,26:70:99:960,0,1982 12 18435452 rs11044004 C T 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.486;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=4.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=0.664;SOR=1.277 GT:AD:DP:GQ:PL 0/1:46,27:73:99:697,0,1252 12 18473881 rs34734874 T G 598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.822;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.822;SOR=1.588 GT:AD:DP:GQ:PL 0/1:25,23:48:99:627,0,591 12 18499777 rs10770357 C G 2275.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2304,215,0 12 18649057 rs12312266 C T 806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.824;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=2.571;SOR=0.874 GT:AD:DP:GQ:PL 0/1:43,36:79:99:835,0,977 12 18656225 rs11044142 G A 793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.047;SOR=0.809 GT:AD:DP:GQ:PL 0/1:35,32:67:99:822,0,912 12 18849071 rs3825081 G C 475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.846;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-0.174;SOR=0.718 GT:AD:DP:GQ:PL 0/1:21,19:40:99:504,0,545 12 18854540 . ATCCTCCTCCTCC A,ATCC 11883.7 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=382;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.23;QD=41.12;SOR=0.901 GT:AD:DP:GQ:PL 1/2:0,28,261:294:99:11921,10444,10531,1116,0,309 12 19406863 rs6486942 C T 1297.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.61;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1326,141,0 12 19423103 rs7978729 A G 315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.41;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.34;ReadPosRankSum=-0.203;SOR=0.507 GT:AD:DP:GQ:PL 0/1:27,16:43:99:344,0,633 12 20522252 rs12305038 G A 827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.998;SOR=0.863 GT:AD:DP:GQ:PL 0/1:48,34:82:99:856,0,1261 12 20766559 rs10743380 C T 3086.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.519 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3115,306,0 12 20803549 rs10743384 T C 1836.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1865,183,0 12 20864356 rs7963279 C T 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=0.256;SOR=0.387 GT:AD:DP:GQ:PL 0/1:75,60:135:99:1336,0,1853 12 20893108 rs2271656 C T 1053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=1.026;SOR=0.693 GT:AD:DP:GQ:PL 0/1:52,46:98:99:1082,0,1383 12 20903757 rs10841611 T C 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.899;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.143;SOR=0.67 GT:AD:DP:GQ:PL 0/1:83,80:163:99:1972,0,1870 12 20905250 rs6487138 C T 557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.065;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=5.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=-0.7;SOR=1.655 GT:AD:DP:GQ:PL 0/1:34,23:57:99:586,0,798 12 20968644 . AATATTCACTTGGTATCTG A 876.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.694;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=5.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.94;ReadPosRankSum=1.7;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/1:31,24:55:99:0|1:20968644_AATATTCACTTGGTATCTG_A:914,0,7718 12 20968665 rs4149158 GTTTA G 869.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.613;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=7.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15;ReadPosRankSum=1.019;SOR=1.743 GT:AD:DP:GQ:PGT:PID:PL 0/1:34,24:58:99:0|1:20968644_AATATTCACTTGGTATCTG_A:907,0,7697 12 21011480 rs4149117 T G 4010.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4039,397,0 12 21013948 rs3764009 C T 1377.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1406,144,0 12 21015760 rs7311358 G A 1689.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1718,164,0 12 21036411 rs2053098 A G 4714.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4743,491,0 12 21054369 rs3764006 G A 3595.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3624,384,0 12 21176135 rs1546308 T C 3166.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3195,317,0 12 21201663 rs11045689 G A 2776.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.686 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2805,282,0 12 21327652 rs61628014 T TA 492.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.549;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=0.958;QD=7.04;ReadPosRankSum=-0.32;SOR=0.66 GT:AD:DP:GQ:PL 0/1:42,28:90:99:530,0,825 12 21329738 rs2306283 A G 620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.072;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=0.715;SOR=0.965 GT:AD:DP:GQ:PL 0/1:36,27:63:99:649,0,902 12 21331599 rs4149057 T C 925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.18;ReadPosRankSum=-0.453;SOR=0.74 GT:AD:DP:GQ:PL 0/1:24,37:61:99:954,0,624 12 21331625 rs2291075 C T 494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.739;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.11;ReadPosRankSum=0.016;SOR=0.99 GT:AD:DP:GQ:PL 0/1:40,21:61:99:523,0,970 12 21391976 rs34671512 A C 484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.82;ReadPosRankSum=-1.178;SOR=1.051 GT:AD:DP:GQ:PL 0/1:38,24:62:99:513,0,992 12 21615664 rs3782660 T C 1649.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=26.61;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1678,184,0 12 21623179 rs61754415 T C 594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.5;MQ=49.29;MQRankSum=-0.084;QD=8.88;ReadPosRankSum=1.225;SOR=0.54 GT:AD:DP:GQ:PL 0/1:39,28:67:99:623,0,1033 12 21623284 . C CA 216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.5;MQ=51.15;MQRankSum=-2.336;QD=4.17;ReadPosRankSum=-1.856;SOR=1.426 GT:AD:DP:GQ:PL 0/1:34,18:57:99:245,0,871 12 21623969 rs6500 A G 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.379;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=1.063;QD=13.34;ReadPosRankSum=0.495;SOR=0.576 GT:AD:DP:GQ:PL 0/1:62,68:130:99:1763,0,1416 12 21639528 rs10712738 GA G 699.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.52;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=2.869;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=18.91;ReadPosRankSum=-1.647;SOR=0.214 GT:AD:DP:GQ:PL 1/1:2,35:37:55:737,55,0 12 21661508 rs11046091 A G 330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-2.296;SOR=0.793 GT:AD:DP:GQ:PL 0/1:12,13:25:99:359,0,338 12 21689882 rs10431213 T A 1158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.906;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=-0.058;SOR=0.729 GT:AD:DP:GQ:PL 0/1:40,48:88:99:1187,0,914 12 21712574 rs1871137 C T 363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.595;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=0.028;SOR=0.693 GT:AD:DP:GQ:PL 0/1:13,16:29:99:392,0,280 12 21713308 rs4639981 T A 741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.802;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-1.123;SOR=1.085 GT:AD:DP:GQ:PL 0/1:20,34:54:99:770,0,540 12 21713402 rs2306180 T C 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.74;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.858;SOR=0.62 GT:AD:DP:GQ:PL 0/1:26,36:62:99:843,0,606 12 21791272 rs1650289 T C 1702.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1731,163,0 12 21791410 . TAA T,TA 1166.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-3.195;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=1.953;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.3;MQRankSum=0.425;QD=19.78;ReadPosRankSum=0.715;SOR=0.38 GT:AD:DP:GQ:PL 1/2:4,20,35:61:99:1204,643,767,374,0,305 12 21797029 rs1650294 A G 2901.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.562 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2930,292,0 12 21958998 . C CA 92.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0;DP=106;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.08;ReadPosRankSum=-0.866;SOR=0.561 GT:AD:DP:GQ:PL 0/1:70,16:99:99:130,0,1499 12 22016004 . G GA 48.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.94;ReadPosRankSum=-0.206;SOR=0.634 GT:AD:DP:GQ:PL 0/1:43,9:52:86:86,0,851 12 22017422 rs697250 A G 1821.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=1.392 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1850,182,0 12 22063115 rs10770865 A G 3536.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=32.45;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3565,327,0 12 22063251 rs35857705 CA C 550.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.5;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=8.737;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.055;QD=9.33;ReadPosRankSum=2.68;SOR=0.183 GT:AD:DP:GQ:PL 0/1:27,32:78:99:588,0,595 12 22063749 rs4762720 T C 2946.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2975,276,0 12 22068849 rs3759236 G T 780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.036;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=1.49;SOR=1.035 GT:AD:DP:GQ:PL 0/1:50,34:84:99:809,0,1169 12 22213786 rs10841930 C T 586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.499;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.852;SOR=0.944 GT:AD:DP:GQ:PL 0/1:31,25:56:99:615,0,738 12 22215194 rs375987416 CT C 1411.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=0.383;QD=44.12;ReadPosRankSum=1.614;SOR=0.33 GT:AD:DP:GQ:PL 1/1:4,28:74:79:803,79,0 12 22354921 rs704219 A G 4300.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4329,426,0 12 22354981 . G GA 58.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.68;ReadPosRankSum=2.087;SOR=0.756 GT:AD:DP:GQ:PL 0/1:73,13:88:96:96,0,1563 12 22602796 rs2063573 A G 2844.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2873,276,0 12 22665633 rs200568343 T TA 88.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.56;ReadPosRankSum=-0.35;SOR=0.711 GT:AD:DP:GQ:PL 0/1:45,12:68:99:117,0,970 12 22814036 rs4963793 A G 978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=7.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=2.709;SOR=1.097 GT:AD:DP:GQ:PL 0/1:36,41:77:99:1007,0,983 12 24985653 rs3736212 G A 1183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=0.35;SOR=0.535 GT:AD:DP:GQ:PL 0/1:85,55:140:99:1212,0,2061 12 25031449 rs6487436 A G 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3573,340,0 12 25054891 rs2291894 G A 6124.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6153,599,0 12 25148755 rs864161 C G 4837.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.186 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4866,483,0 12 25150150 . T TG 31.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.585;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.13;ReadPosRankSum=2.271;SOR=0.693 GT:AD:DP:GQ:PL 0/1:22,6:28:69:69,0,536 12 25158193 rs859136 A G 475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=0.536;SOR=0.602 GT:AD:DP:GQ:PL 0/1:34,23:57:99:504,0,915 12 25164331 rs699039 A G 1297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=1.18;SOR=0.677 GT:AD:DP:GQ:PL 0/1:85,59:144:99:1326,0,2154 12 25242595 rs7969931 C G 1605.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.159 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1634,164,0 12 25261735 rs859146 G T 913.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=28.56;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,32:32:96:942,96,0 12 25299921 rs11047863 G A 617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=1.414;SOR=0.409 GT:AD:DP:GQ:PL 0/1:18,29:47:99:646,0,422 12 25311489 rs10842496 G T 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-1.267;SOR=0.81 GT:AD:DP:GQ:PL 0/1:51,43:94:99:964,0,1267 12 25362777 rs1137282 A G 2650.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.13;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2679,240,0 12 25368462 rs4362222 C T 3191.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3220,335,0 12 25671759 rs1479500 T A 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.712;SOR=0.545 GT:AD:DP:GQ:PL 0/1:55,68:123:99:1535,0,1318 12 26275555 rs11048413 G A 1785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=5.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=1.796;SOR=0.383 GT:AD:DP:GQ:PL 0/1:60,75:135:99:1814,0,1463 12 26277129 rs1871557 C G 561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.454;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.315;SOR=0.846 GT:AD:DP:GQ:PL 0/1:20,22:42:99:590,0,499 12 26648092 rs2230381 C T 431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.068;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.497;SOR=1.061 GT:AD:DP:GQ:PL 0/1:24,21:45:99:460,0,520 12 26755546 rs3736185 C T 687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.731;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.145;SOR=0.395 GT:AD:DP:GQ:PL 0/1:31,27:58:99:716,0,751 12 26784850 rs2230372 G A 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.413;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.349;SOR=0.821 GT:AD:DP:GQ:PL 0/1:74,63:137:99:1539,0,1681 12 26806955 rs2230380 G A 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.709;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.71;ReadPosRankSum=-0.689;SOR=0.553 GT:AD:DP:GQ:PL 0/1:50,23:73:99:591,0,1308 12 26809316 rs2230379 G A 2280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=8.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.241;SOR=0.579 GT:AD:DP:GQ:PL 0/1:114,106:220:99:2309,0,2712 12 26809412 rs2230378 T G 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.963;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.14;ReadPosRankSum=-0.916;SOR=0.65 GT:AD:DP:GQ:PL 0/1:72,95:167:99:2389,0,1546 12 26810777 rs2291264 T C 1128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.232;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.586;SOR=0.913 GT:AD:DP:GQ:PL 0/1:62,44:106:99:1157,0,1523 12 26810816 rs2291263 T G 1342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.46;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.779;SOR=0.793 GT:AD:DP:GQ:PL 0/1:55,47:102:99:1371,0,1452 12 26834804 rs59199365 T TACTC 1924.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.638;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.44;ReadPosRankSum=1.25;SOR=1.017 GT:AD:DP:GQ:PL 0/1:50,49:99:99:1962,0,2916 12 26868322 rs1900941 T C 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.788;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=1.101;SOR=0.809 GT:AD:DP:GQ:PL 0/1:64,51:115:99:1138,0,1464 12 26878577 rs17480784 C G 618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.232;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.835;SOR=0.749 GT:AD:DP:GQ:PL 0/1:25,29:54:99:647,0,763 12 27059224 rs1488052 G A 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.09;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.74;ReadPosRankSum=3.022;SOR=0.642 GT:AD:DP:GQ:PL 0/1:36,53:89:99:1429,0,985 12 27064232 rs3210635 C T 1674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=3.101;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.044;SOR=0.996 GT:AD:DP:GQ:PL 0/1:61,76:137:99:1703,0,1343 12 27128594 rs5797208 G GT 1805.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.654;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=0.245;SOR=0.577 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1843,0,2298 12 27143579 rs12299714 C T 673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.168;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=12.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=1.611;SOR=0.102 GT:AD:DP:GQ:PL 0/1:29,32:61:99:702,0,897 12 27175494 rs3963548 T C 3923.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.25;SOR=1.931 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3952,354,0 12 27234200 rs708165 T C 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.984;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.523;SOR=0.788 GT:AD:DP:GQ:PL 0/1:62,48:110:99:1350,0,1584 12 27234999 rs708167 T C 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=4.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.982;SOR=0.645 GT:AD:DP:GQ:PL 0/1:56,54:110:99:1420,0,1446 12 27235381 rs708168 G A 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.428;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.5;MQ=59.43;MQRankSum=-1.473;QD=12.15;ReadPosRankSum=-1.199;SOR=0.807 GT:AD:DP:GQ:PL 0/1:83,79:162:99:1996,0,2030 12 27470866 rs6487601 G A 3684.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3713,380,0 12 27625823 rs386428 A T 2645.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2674,272,0 12 27627805 rs411816 G A 4137.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4166,437,0 12 27648786 rs306646 A G 2138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.716;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=1.42;SOR=0.87 GT:AD:DP:GQ:PL 0/1:90,87:177:99:2167,0,2098 12 27799008 rs73294067 T G 884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.475;SOR=0.798 GT:AD:DP:GQ:PL 0/1:32,37:69:99:913,0,823 12 27800746 rs2194816 G T 1719.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1748,183,0 12 27826780 rs2052673 T G 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.492;SOR=0.821 GT:AD:DP:GQ:PL 0/1:41,46:87:99:1021,0,930 12 27849796 rs929949 A G 4638.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4667,447,0 12 27850113 rs12819160 A T 962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=-0.181;SOR=0.663 GT:AD:DP:GQ:PL 0/1:74,45:119:99:991,0,1819 12 27867706 rs11049106 C T 1157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.54;ReadPosRankSum=1.24;SOR=1.017 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,31:70:99:0|1:27867706_C_T:1186,0,2027 12 27867727 rs1127787 G A 1233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.66;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.02;ReadPosRankSum=1.889;SOR=1.002 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,35:77:99:0|1:27867706_C_T:1262,0,2087 12 27915944 rs11049124 A G 2266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.497;SOR=0.434 GT:AD:DP:GQ:PL 0/1:68,94:162:99:2295,0,1656 12 27916206 rs11049125 G A 1575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=1.295;SOR=0.85 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1604,0,1685 12 27916224 rs11049126 A G 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.309;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.59;ReadPosRankSum=1.654;SOR=0.742 GT:AD:DP:GQ:PL 0/1:54,65:119:99:1884,0,1375 12 28412372 rs11049488 G A 598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.593;SOR=0.55 GT:AD:DP:GQ:PL 0/1:30,31:61:99:627,0,765 12 28605426 rs10771427 G A 2682.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.559 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2711,274,0 12 28637115 rs1511550 G A 436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-1.189;SOR=0.602 GT:AD:DP:GQ:PL 0/1:19,20:39:99:465,0,454 12 29630081 rs7975356 G A 4041.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4070,410,0 12 29630328 rs199748254 C T 3053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.793;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=0.531;SOR=0.672 GT:AD:DP:GQ:PL 0/1:102,117:219:99:3082,0,2805 12 29736480 rs2113879 A G 1620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.472;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=10.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-0.007;SOR=1.4 GT:AD:DP:GQ:PL 0/1:82,66:148:99:1649,0,1827 12 29736523 rs2288230 G T 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.542;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-1.424;SOR=1.179 GT:AD:DP:GQ:PL 0/1:54,40:94:99:984,0,1319 12 29936613 rs184221 T G 8632.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8661,846,0 12 30787228 rs10843797 C T 2431.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.339 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2460,243,0 12 30823971 rs1054426 A G 2359.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2388,228,0 12 30868002 rs13656 C T 4267.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4296,467,0 12 30881809 rs2304630 T C 5334.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5363,531,0 12 31135478 rs35089 T C 7774.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=1.161 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7803,752,0 12 31135579 rs2075333 T C 4268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.758;SOR=0.682 GT:AD:DP:GQ:PL 0/1:170,188:358:99:4297,0,3770 12 31244705 rs150966927 C T 2853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.468;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=4.45;MLEAC=1;MLEAF=0.5;MQ=52.24;MQRankSum=2.14;QD=8.86;ReadPosRankSum=-0.34;SOR=0.929 GT:AD:DP:GQ:PL 0/1:200,122:322:99:2882,0,5234 12 31247682 rs61917225 T C 670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.166;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.5;MQ=51.61;MQRankSum=-1.525;QD=5.08;ReadPosRankSum=0.638;SOR=0.502 GT:AD:DP:GQ:PL 0/1:92,40:132:99:699,0,2367 12 31283446 rs140298932 T G 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.293;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.35;MQRankSum=-3.633;QD=6.92;ReadPosRankSum=0.447;SOR=0.711 GT:AD:DP:GQ:PL 0/1:103,53:156:99:1107,0,2361 12 31285169 rs2287449 A T 3912.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.47;QD=28.56;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3941,411,0 12 31288884 rs4931444 G T 4328.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.61;QD=33.56;SOR=1.384 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4357,388,0 12 31288955 rs11051266 G A 2981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.36;MQRankSum=1.11;QD=10.21;ReadPosRankSum=-0.474;SOR=0.687 GT:AD:DP:GQ:PL 0/1:144,148:292:99:3010,0,3217 12 31297871 rs12309295 G C 6978.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.73;QD=30.34;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7007,690,0 12 31300891 rs56144986 C A 8421.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.75;QD=30.19;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8450,836,0 12 31301888 rs11051274 T C 2511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.787;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.5;MQ=59.54;MQRankSum=-0.791;QD=12.37;ReadPosRankSum=1.808;SOR=0.512 GT:AD:DP:GQ:PL 0/1:104,99:203:99:2540,0,2601 12 31310983 rs7971718 G A 2087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=1.522;QD=12.35;ReadPosRankSum=0.643;SOR=0.751 GT:AD:DP:GQ:PL 0/1:79,90:169:99:2116,0,1684 12 31311973 rs61733843 G A 2057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.5;MQ=49.31;MQRankSum=-3.357;QD=11.69;ReadPosRankSum=0.537;SOR=0.49 GT:AD:DP:GQ:PL 0/1:84,92:176:99:2086,0,2044 12 31648728 rs143241018 GA G 971.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.47;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.69;QD=10.56;ReadPosRankSum=0.301;SOR=0.755 GT:AD:DP:GQ:PL 0/1:44,48:92:99:1009,0,977 12 31648826 rs4930979 C T 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.69;QD=12.67;ReadPosRankSum=-0.265;SOR=0.943 GT:AD:DP:GQ:PL 0/1:45,49:94:99:1219,0,1043 12 31820564 rs201646763 CT C 181.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.3;ReadPosRankSum=-1.206;SOR=0.629 GT:AD:DP:GQ:PL 0/1:41,14:62:99:219,0,881 12 32134207 rs2388981 C A 1904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.723;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.12;ReadPosRankSum=-1.91;SOR=0.758 GT:AD:DP:GQ:PL 0/1:52,74:126:99:1933,0,1408 12 32134240 rs2388982 C T 4237.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4266,416,0 12 32134638 rs2166807 T C 3982.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.19;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:4011,360,0 12 32134815 rs16919122 G A 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=1.093;SOR=0.769 GT:AD:DP:GQ:PL 0/1:86,65:151:99:1559,0,2335 12 32134943 rs10771894 A G 1081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.04;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=1.954;SOR=0.792 GT:AD:DP:GQ:PL 0/1:71,50:121:99:1110,0,1849 12 32135186 rs3759302 T A 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.012;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-1.089;SOR=0.458 GT:AD:DP:GQ:PL 0/1:64,57:121:99:1375,0,1555 12 32135441 rs3759301 T C 4504.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4533,425,0 12 32137565 rs1057994 G A 1286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.458;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-1.855;SOR=0.745 GT:AD:DP:GQ:PL 0/1:61,48:109:99:1315,0,1640 12 32137852 rs3759297 C G 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.367;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.559;SOR=0.648 GT:AD:DP:GQ:PL 0/1:83,68:151:99:1722,0,2039 12 32459070 rs41521147 T G 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.406;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.527;SOR=0.739 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1193,0,1326 12 32481093 rs3748275 G C 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.334;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-1.762;SOR=0.64 GT:AD:DP:GQ:PL 0/1:117,117:234:99:3034,0,3049 12 32481369 rs34447944 C T 3126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.533;SOR=0.604 GT:AD:DP:GQ:PL 0/1:114,131:245:99:3155,0,2790 12 32490764 rs2270786 G A 2098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-2.232;SOR=0.854 GT:AD:DP:GQ:PL 0/1:92,93:185:99:2127,0,2178 12 32552769 rs2651369 C G 10009.8 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,317:317:99:10038,950,0 12 32735236 rs904582 C T 6955.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6984,682,0 12 32764184 rs10844253 G A 1519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=4.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-1.62;SOR=0.587 GT:AD:DP:GQ:PL 0/1:82,71:153:99:1548,0,1916 12 32772620 rs73083501 C T 1314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.57;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.942;QD=11.05;ReadPosRankSum=0.672;SOR=0.929 GT:AD:DP:GQ:PL 0/1:62,57:119:99:1343,0,1616 12 32777362 rs11052110 G A 502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.45;ReadPosRankSum=-0.175;SOR=0.928 GT:AD:DP:GQ:PL 0/1:52,26:78:99:531,0,1293 12 32778581 rs11052113 T C 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-0.619;SOR=0.552 GT:AD:DP:GQ:PL 0/1:48,62:110:99:1486,0,1207 12 32854366 rs10844308 A C 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.278;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=-1.351;SOR=0.446 GT:AD:DP:GQ:PL 0/1:66,40:106:99:906,0,1650 12 32860302 rs2272238 G A 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-2.346;SOR=0.56 GT:AD:DP:GQ:PL 0/1:29,31:60:99:697,0,648 12 32875406 rs10844318 A G 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.069;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=13.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.785;SOR=1.444 GT:AD:DP:GQ:PL 0/1:58,61:119:99:1581,0,1321 12 32908237 rs11539445 C A 2806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.659;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-1.766;SOR=0.749 GT:AD:DP:GQ:PL 0/1:123,126:249:99:2835,0,3183 12 32908518 rs11539444 G A 3760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-7.09;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=1.143;SOR=0.566 GT:AD:DP:GQ:PL 0/1:159,156:315:99:3789,0,4773 12 33021934 rs1046116 A G 1118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.593;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=0.104;SOR=0.874 GT:AD:DP:GQ:PL 0/1:65,49:114:99:1147,0,1487 12 33535289 rs10844571 G A 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.556;SOR=0.991 GT:AD:DP:GQ:PL 0/1:84,76:160:99:1806,0,2038 12 38712142 rs6582584 C G 6445.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.18;QD=29.57;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6474,652,0 12 38715000 rs35518352 A G 5373.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=31.8;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5402,505,0 12 39087609 rs3759139 G A 4307.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.26;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4336,472,0 12 39096664 rs7960616 T A 2132.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.226 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2161,216,0 12 39124173 rs5797589 G GA 1401.73 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=1.562 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1439,144,0 12 39233771 rs3803020 A G 900.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,29:29:87:929,87,0 12 39695445 rs2271477 G A 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.63;ReadPosRankSum=1.608;SOR=0.421 GT:AD:DP:GQ:PL 0/1:40,72:112:99:1779,0,952 12 40037727 rs10735878 A G 723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.609;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.525;SOR=1.246 GT:AD:DP:GQ:PL 0/1:33,30:63:99:752,0,844 12 40345185 rs11446411 G GA,GAA 1418.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.932;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=24.05;ReadPosRankSum=-0.42;SOR=0.187 GT:AD:DP:GQ:PL 1/2:2,44,13:59:99:1456,277,155,950,0,914 12 40619082 rs2256408 G A 3197.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3226,306,0 12 40631791 rs10878245 T C 2226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=7.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=-1.094;SOR=0.352 GT:AD:DP:GQ:PL 0/1:64,90:154:99:2255,0,1419 12 40688695 rs7966550 T C 392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=0.016;SOR=1.179 GT:AD:DP:GQ:PL 0/1:28,18:46:99:421,0,698 12 40753044 rs111612315 C CT 611.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.27;ReadPosRankSum=1.091;SOR=0.582 GT:AD:DP:GQ:PL 0/1:43,31:76:99:649,0,818 12 41582590 rs10879830 G C 4184.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.7;SOR=1.426 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,98:98:99:1|1:41582590_G_C:4213,295,0 12 41582603 rs10879831 G C 4019.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.69;SOR=1.714 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,92:92:99:1|1:41582590_G_C:4048,277,0 12 41946453 rs285585 T C 2575.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2604,266,0 12 42503467 rs7312933 T C 733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.954;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=1.085;SOR=0.779 GT:AD:DP:GQ:PL 0/1:34,31:65:99:762,0,751 12 42503505 rs824695 T A 1396.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1425,144,0 12 42554505 rs1059360 A G 2168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.258;SOR=0.788 GT:AD:DP:GQ:PL 0/1:76,97:173:99:2197,0,1723 12 42627994 rs67374165 GAGAAAAGAAAAGAAA G 1591.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.5;MQ=60.68;MQRankSum=2.618;QD=17.88;ReadPosRankSum=1.249;SOR=0.445 GT:AD:DP:GQ:PL 0/1:46,43:89:99:1629,0,6596 12 42717811 rs17091074 A T 681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=0.291;SOR=0.778 GT:AD:DP:GQ:PL 0/1:53,32:85:99:710,0,1407 12 42768646 rs59428088 G GT 615.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.252;SOR=1.052 GT:AD:DP:GQ:PL 0/1:33,29:78:99:653,0,567 12 42835328 rs60616542 TA T 226.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.377;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=9.328;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.3;QD=2.46;ReadPosRankSum=-0.499;SOR=1.496 GT:AD:DP:GQ:PL 0/1:69,23:111:99:264,0,1592 12 43823545 rs139600751 G T 461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.687;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-1.069;SOR=0.804 GT:AD:DP:GQ:PL 0/1:26,19:45:99:490,0,666 12 43860526 rs11182088 A G 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.645;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=0.75;SOR=0.631 GT:AD:DP:GQ:PL 0/1:29,62:91:99:1383,0,622 12 44148259 rs1057190 T C 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.001;SOR=0.786 GT:AD:DP:GQ:PL 0/1:66,73:139:99:1783,0,1503 12 44148773 rs33999797 A C 1399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.043;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=0.949;SOR=0.746 GT:AD:DP:GQ:PL 0/1:68,59:127:99:1428,0,1687 12 44180295 rs4251545 G A 750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.813;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.625;SOR=0.727 GT:AD:DP:GQ:PL 0/1:29,27:56:99:779,0,740 12 44194265 rs17093734 A G 1148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.412;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.404;SOR=0.804 GT:AD:DP:GQ:PL 0/1:45,51:96:99:1177,0,888 12 44196125 rs112006889 T C 450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.852;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.23;MQRankSum=1.19;QD=7.04;ReadPosRankSum=-0.609;SOR=0.693 GT:AD:DP:GQ:PL 0/1:46,18:64:99:479,0,1136 12 44338153 rs6582491 T A 3038.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3067,309,0 12 45307633 rs374144 T C 366.77 PASS AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.2;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,14:14:42:395,42,0 12 45410075 rs1224442 A G 3622.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.407 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3651,365,0 12 45417666 rs2731038 T C 4307.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4336,452,0 12 46758494 rs2307061 A G 2231.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.34 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2260,219,0 12 46761127 rs10880959 G A 1156.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.07;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=3.745;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.71;ReadPosRankSum=-0.837;SOR=0.82 GT:AD:DP:GQ:PL 1/1:1,44:45:92:1185,92,0 12 47168898 rs180414 G A 4740.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4769,492,0 12 47173662 rs180426 A G 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.194;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.843;SOR=0.742 GT:AD:DP:GQ:PL 0/1:55,43:98:99:1072,0,1445 12 47173830 rs2287471 G A 881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=2.297;SOR=0.798 GT:AD:DP:GQ:PL 0/1:29,35:64:99:910,0,753 12 47178307 rs180430 A G 778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-0.453;SOR=0.71 GT:AD:DP:GQ:PL 0/1:26,34:60:99:807,0,638 12 48091522 rs140915397 AACAGGG A 1158.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.105;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.56;ReadPosRankSum=-1.093;SOR=0.641 GT:AD:DP:GQ:PL 0/1:35,31:66:99:1196,0,2867 12 48134695 rs2074533 T C 9941.77 PASS AC=2;AF=1;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.47;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9970,891,0 12 48141475 rs60915129 T C 4558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.26;ReadPosRankSum=0.556;SOR=0.808 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,118:225:99:0|1:48141472_C_T:4587,0,5145 12 48144925 rs2016123 T C 9975.77 PASS AC=2;AF=1;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,339:339:99:10004,1015,0 12 48151822 rs11168230 C G 3659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.583;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=0.963;SOR=0.764 GT:AD:DP:GQ:PL 0/1:162,145:307:99:3688,0,3954 12 48177906 rs7306788 C T 4727.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4756,476,0 12 48178465 rs3815138 T C 3081.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3110,315,0 12 48178513 rs7972177 A G 4382.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4411,468,0 12 48190044 rs11831883 C T 4150.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4179,444,0 12 48238757 rs731236 A G 4583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.38;ReadPosRankSum=-0.125;SOR=0.724 GT:AD:DP:GQ:PL 0/1:118,180:298:99:4612,0,2764 12 48272895 rs2228570 A G 2834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.564;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=0.902;SOR=0.801 GT:AD:DP:GQ:PL 0/1:89,109:198:99:2863,0,1964 12 48358203 rs35299693 A G 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.093;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=6.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-1.991;SOR=1.339 GT:AD:DP:GQ:PL 0/1:55,43:98:99:1289,0,1249 12 48389643 rs1034762 A C 1373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.236;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=3.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=1.438;SOR=1.071 GT:AD:DP:GQ:PL 0/1:48,53:101:99:1402,0,1063 12 48398002 rs3803184 G C 901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.424;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-1.078;SOR=1.002 GT:AD:DP:GQ:PL 0/1:38,35:73:99:930,0,870 12 48398080 rs3803183 T A 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=1.94;SOR=0.452 GT:AD:DP:GQ:PL 0/1:37,36:73:99:918,0,940 12 48501161 rs11609399 A T 553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.125;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=-0.512;SOR=0.565 GT:AD:DP:GQ:PL 0/1:39,27:66:99:582,0,931 12 48527186 rs1049392 C T 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.939;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=6.355;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-1.026;SOR=1.112 GT:AD:DP:GQ:PL 0/1:66,72:138:99:1848,0,1517 12 48578325 rs10783231 A C 2741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.673;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.109;SOR=0.712 GT:AD:DP:GQ:PL 0/1:114,113:227:99:2770,0,2650 12 48578442 rs73304926 C T 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-2.313;SOR=0.604 GT:AD:DP:GQ:PL 0/1:122,103:225:99:2344,0,3001 12 48723784 rs2291483 C T 2758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.471;SOR=0.731 GT:AD:DP:GQ:PL 0/1:157,131:288:99:2787,0,3573 12 48866585 rs7956679 A C 2244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.99;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=4.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.847;SOR=0.936 GT:AD:DP:GQ:PL 0/1:98,89:187:99:2273,0,2467 12 48866792 rs7966826 C T 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-1.94;SOR=0.512 GT:AD:DP:GQ:PL 0/1:112,86:198:99:2023,0,2819 12 48879951 rs11168599 T G 1143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.911;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=4.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.864;SOR=1.214 GT:AD:DP:GQ:PL 0/1:44,43:87:99:1172,0,1080 12 48888594 rs11458 C T 1276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=-0.87;SOR=0.493 GT:AD:DP:GQ:PL 0/1:90,63:153:99:1305,0,2164 12 48888689 rs9268 C G 1702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.291;SOR=0.496 GT:AD:DP:GQ:PL 0/1:81,73:154:99:1731,0,2046 12 48919556 rs2731073 A G 3868.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3897,360,0 12 48919659 rs4075258 T C 4702.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.9;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4731,393,0 12 48919660 rs35367885 G A 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=1.332;SOR=0.489 GT:AD:DP:GQ:PL 0/1:77,57:134:99:1330,0,1845 12 48919796 rs12425460 C T 4726.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4755,452,0 12 48920006 rs12425518 G A 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.918;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.309;SOR=0.531 GT:AD:DP:GQ:PL 0/1:74,57:131:99:1395,0,1741 12 49048738 rs3741628 G T 3560.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3589,385,0 12 49065727 rs7303113 T C 2887.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2916,288,0 12 49086963 rs3741632 G A 4734.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4763,474,0 12 49087656 rs3013 G C 3933.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3962,396,0 12 49091972 rs11420004 G GA 523.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.342;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=4.317;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=0.72;QD=17.46;ReadPosRankSum=-0.775;SOR=0.174 GT:AD:DP:GQ:PL 0/1:6,24:34:40:561,0,40 12 49255798 rs1565933 G C 2543.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.65;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2572,275,0 12 49316931 . C CA 638.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=6.502;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=0.892;QD=10.14;ReadPosRankSum=2.31;SOR=0.265 GT:AD:DP:GQ:PL 0/1:29,34:68:99:676,0,527 12 49333799 rs2228417 G A 1208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.35;SOR=0.555 GT:AD:DP:GQ:PL 0/1:59,52:111:99:1237,0,1581 12 49334762 rs12122 G C 5731.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5760,567,0 12 49424534 rs11168830 G A 2750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=0.643;SOR=0.71 GT:AD:DP:GQ:PL 0/1:87,104:191:99:2779,0,2065 12 49883371 rs2272478 A G 1099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.55;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=0.166;SOR=0.456 GT:AD:DP:GQ:PL 0/1:42,46:88:99:1128,0,959 12 49950251 rs113209368 C G 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.197;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.365;SOR=0.914 GT:AD:DP:GQ:PL 0/1:44,47:91:99:1136,0,1030 12 49958320 . G A 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.933;ClippingRankSum=0;DP=205;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=2.897;SOR=0.6 GT:AD:DP:GQ:PL 0/1:101,104:205:99:2388,0,2194 12 50040811 rs3841320 A AG 1901.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.426;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=3.212;QD=10.06;ReadPosRankSum=1.304;SOR=0.707 GT:AD:DP:GQ:PL 0/1:111,78:189:99:1939,0,3038 12 50232169 rs11169172 A T 1261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.638;SOR=0.751 GT:AD:DP:GQ:PL 0/1:67,55:122:99:1290,0,1647 12 50344976 rs3741559 G A 6424.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6453,645,0 12 50356174 rs71889938 TG T 5698.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.431;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;MQRankSum=0.226;QD=26.51;ReadPosRankSum=-0.362;SOR=0.566 GT:AD:DP:GQ:PL 1/1:9,206:226:99:5736,448,0 12 50386015 rs296737 C T 5970.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5999,606,0 12 50452708 rs653576 C G 12093.8 PASS AC=2;AF=1;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,391:391:99:12122,1171,0 12 50503269 rs836180 C T 546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.01;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.227;SOR=1.179 GT:AD:DP:GQ:PL 0/1:30,25:55:99:575,0,722 12 50529736 rs3741562 G A 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.164;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.971;SOR=0.689 GT:AD:DP:GQ:PL 0/1:58,62:120:99:1403,0,1551 12 50537815 rs7302981 A G 423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.73;ReadPosRankSum=0.14;SOR=0.557 GT:AD:DP:GQ:PL 0/1:39,24:63:99:452,0,922 12 50589674 rs71824143 CA C 461.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=3.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.16;ReadPosRankSum=0.166;SOR=0.591 GT:AD:DP:GQ:PL 0/1:40,35:93:99:499,0,702 12 50727706 rs6580741 G C 1489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.15;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=1.558;SOR=0.471 GT:AD:DP:GQ:PL 0/1:77,66:143:99:1518,0,1868 12 50727811 rs6580742 C T 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=1.188;SOR=0.735 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1601,0,2207 12 50744094 rs7296277 G A 2498.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.554 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2527,248,0 12 50744119 rs7296291 G A 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.051;SOR=0.91 GT:AD:DP:GQ:PL 0/1:54,40:94:99:1004,0,1487 12 50744171 rs7312252 T C 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.177;SOR=0.865 GT:AD:DP:GQ:PL 0/1:70,65:135:99:1668,0,1839 12 50744753 rs10506292 T C 2377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.917;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.67;SOR=0.865 GT:AD:DP:GQ:PL 0/1:119,93:212:99:2406,0,2859 12 50746917 rs10876023 A G 6849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.342;ClippingRankSum=0;DB;DP=521;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=-1.302;QD=13.3;ReadPosRankSum=-0.655;SOR=0.81 GT:AD:DP:GQ:PL 0/1:247,268:515:99:6878,0,5203 12 50747005 rs10876024 T C 6907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.748;ClippingRankSum=0;DB;DP=572;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=-0.663;QD=12.18;ReadPosRankSum=-0.249;SOR=0.764 GT:AD:DP:GQ:PL 0/1:267,300:567:99:6936,0,5500 12 50749221 rs4435082 G C 6500.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.92;SOR=0.93 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,148:148:99:1|1:50749221_G_C:6529,445,0 12 50749227 rs4625558 T G 6535.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.16;SOR=0.866 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,148:148:99:1|1:50749221_G_C:6564,448,0 12 50749294 rs4421818 A G 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.006;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=-1.074;SOR=0.538 GT:AD:DP:GQ:PL 0/1:82,93:175:99:2539,0,1931 12 50750040 rs7964439 C A 2668.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.557 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2697,267,0 12 50754563 rs12303082 T G 2264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=-0.15;SOR=0.718 GT:AD:DP:GQ:PL 0/1:60,90:150:99:2293,0,1423 12 50829263 rs113327207 T TTATTC 1897.73 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=48.66;SOR=1.73 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1935,129,0 12 51089616 rs2684891 T C 4041.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.246 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4070,410,0 12 51089734 rs11169524 T A 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.756;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.687;SOR=0.902 GT:AD:DP:GQ:PL 0/1:107,83:190:99:2059,0,2504 12 51108189 . C T 1589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=1.833;SOR=0.648 GT:AD:DP:GQ:PL 0/1:64,67:131:99:1618,0,1579 12 51135275 rs1866422 T C 6159.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6188,617,0 12 51203226 rs4986837 GT G 1756.73 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.75;QD=25.83;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1794,204,0 12 51203371 rs1129406 C T 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=-0.434;QD=17.33;ReadPosRankSum=1.316;SOR=0.638 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,63:137:99:0|1:51203371_C_T:2402,0,3946 12 51203376 rs4986838 T C 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.11;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.085;QD=17.87;ReadPosRankSum=0.35;SOR=0.689 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,62:133:99:0|1:51203371_C_T:2405,0,3910 12 51236802 rs10876100 T C 2613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.933;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.032;SOR=0.701 GT:AD:DP:GQ:PL 0/1:117,108:225:99:2642,0,2707 12 51236931 rs829121 G A 5731.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5760,572,0 12 51237816 rs861204 G A 1630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=1.053;SOR=0.931 GT:AD:DP:GQ:PL 0/1:65,63:128:99:1659,0,1643 12 51354803 rs12306808 C T 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.307;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.63;ReadPosRankSum=-0.908;SOR=0.688 GT:AD:DP:GQ:PL 0/1:42,60:102:99:1418,0,1125 12 51382232 rs161044 T C 4130.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4159,393,0 12 51393116 rs224454 C T 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.046;SOR=0.834 GT:AD:DP:GQ:PL 0/1:42,43:85:99:1005,0,1058 12 51402905 rs445520 T G 2478.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2507,231,0 12 51404467 rs427020 C T 594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=2.116;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,28:58:99:0|1:51404467_C_T:623,0,633 12 51450211 rs202105831 A T 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.261;SOR=0.581 GT:AD:DP:GQ:PL 0/1:49,55:104:99:1372,0,1252 12 51461735 rs150653336 T C 1233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=4.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-1.001;SOR=0.368 GT:AD:DP:GQ:PL 0/1:70,54:124:99:1262,0,1875 12 51467596 rs11169696 A C 3468.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=31.82;SOR=1.2 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3497,327,0 12 51636259 rs1049467 C T 6140.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.07;QD=31.49;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6169,584,0 12 51681903 rs7954976 T C 2278.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2307,228,0 12 51685831 rs3210837 T C 6594.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.65;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6623,589,0 12 51723598 rs17860363 A AG 4783.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.487;MLEAC=2;MLEAF=1;MQ=60.34;MQRankSum=0.22;QD=31.06;ReadPosRankSum=-1.609;SOR=0.59 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4821,452,0 12 51737520 rs17860301 G T 1753.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.42;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1782,205,0 12 51737562 rs17860300 T C 2205.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2234,228,0 12 51740387 rs57614420 ACTGG A 2348.73 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.32;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:51740387_ACTGG_A:2386,160,0 12 51740393 . CCATATCCACTT C 2392.73 PASS AC=2;AF=1;AN=2;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.15;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:51740387_ACTGG_A:2430,163,0 12 51740407 . CATAA C 2482.73 PASS AC=2;AF=1;AN=2;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.98;SOR=0.931 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,54:54:99:1|1:51740387_ACTGG_A:2520,169,0 12 51740415 . A AAG 2605.73 PASS AC=2;AF=1;AN=2;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.71;SOR=0.877 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,57:57:99:1|1:51740387_ACTGG_A:2643,179,0 12 51740416 . C CG 2605.73 PASS AC=2;AF=1;AN=2;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.93;SOR=0.914 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,58:58:99:1|1:51740387_ACTGG_A:2643,179,0 12 51752897 rs907347 G A 734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.68;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.181;SOR=0.911 GT:AD:DP:GQ:PL 0/1:36,32:68:99:763,0,965 12 51754629 rs2241545 A G 625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.54;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=2.047;SOR=0.342 GT:AD:DP:GQ:PL 0/1:27,29:56:99:654,0,688 12 51864290 . A G 1077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-1.365;SOR=0.629 GT:AD:DP:GQ:PL 0/1:41,44:85:99:1106,0,1004 12 52080965 rs4761829 C T 3501.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3530,351,0 12 52159438 rs56879517 G GT 1494.73 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=27.68;SOR=2.001 GT:AD:DP:GQ:PL 1/1:0,54:58:99:1532,173,0 12 52163789 rs303808 G A 2302.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.98;SOR=1.394 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2331,216,0 12 52184271 rs303815 T C 3580.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.97;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3609,383,0 12 52200742 rs60637 C A 5111.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5140,480,0 12 52215102 rs303819 T G 10197.8 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,329:329:99:10226,986,0 12 52306267 . G A 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=0.021;SOR=0.507 GT:AD:DP:GQ:PL 0/1:85,62:147:99:1379,0,2098 12 52369300 rs2242106 C T 6333.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6362,621,0 12 52435632 rs138157115 A C 2371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.844;SOR=0.6 GT:AD:DP:GQ:PL 0/1:92,108:200:99:2400,0,2088 12 52448409 rs61751612 C T 2504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=1.847;SOR=0.621 GT:AD:DP:GQ:PL 0/1:141,103:244:99:2533,0,3974 12 52565322 rs3741737 G T 4554.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.77;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4583,416,0 12 52566047 rs3741736 G A 2921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.4;SOR=0.544 GT:AD:DP:GQ:PL 0/1:152,128:280:99:2950,0,3823 12 52627215 rs7308888 A G 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.04;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.458;SOR=0.715 GT:AD:DP:GQ:PL 0/1:125,99:224:99:2359,0,2996 12 52631313 rs6580870 A G 941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.418;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=-0.17;SOR=0.981 GT:AD:DP:GQ:PL 0/1:68,43:111:99:970,0,1500 12 52635241 rs2078201 G C 994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.557;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-2.392;SOR=0.9 GT:AD:DP:GQ:PL 0/1:55,39:94:99:1023,0,1566 12 52639302 rs2608009 G C 3060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.997;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-1.263;SOR=0.61 GT:AD:DP:GQ:PL 0/1:124,126:250:99:3089,0,2914 12 52683860 . ACTT A 53.7 PASS AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=26.85;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:90,6,0 12 52699548 rs2032360 T C 9721.77 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.8;QD=30.19;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,322:322:99:9750,965,0 12 52708420 rs2857671 G A 3744.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3773,387,0 12 52708565 rs2857670 A G 5310.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5339,540,0 12 52711450 rs2248619 T C 6417.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6446,605,0 12 52712975 rs3741715 G A 12091.8 PASS AC=2;AF=1;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.176 GT:AD:DP:GQ:PL 1/1:0,390:390:99:12120,1170,0 12 52774235 rs951773 A G 7194.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7223,689,0 12 52788928 rs2658658 G A 5940.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=1.237 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5969,594,0 12 52866060 rs11608915 C T 7058.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.07;QD=30.69;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7087,690,0 12 52913668 rs11170164 C T 2392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.085;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.174;SOR=0.669 GT:AD:DP:GQ:PL 0/1:86,93:179:99:2421,0,2116 12 52938364 rs2292507 T C 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.06;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=1.704;SOR=0.662 GT:AD:DP:GQ:PL 0/1:94,66:160:99:1483,0,2342 12 52938497 rs10783518 A C 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.544;SOR=0.481 GT:AD:DP:GQ:PL 0/1:73,59:132:99:1468,0,1936 12 52938535 rs10783519 A G 1069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.933;SOR=0.741 GT:AD:DP:GQ:PL 0/1:49,45:94:99:1098,0,1267 12 52941784 rs3839975 CAG C 2932.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.756;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.109;QD=17.05;ReadPosRankSum=1.237;SOR=0.59 GT:AD:DP:GQ:PL 0/1:94,78:172:99:2970,0,3754 12 52943144 rs4761930 G A 396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.96;ReadPosRankSum=1.38;SOR=0.594 GT:AD:DP:GQ:PL 0/1:35,22:57:99:425,0,973 12 52965173 rs670741 T G 838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.656;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=0.402;SOR=0.624 GT:AD:DP:GQ:PL 0/1:47,37:84:99:867,0,1130 12 52965722 rs673363 T C 625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=0.762;SOR=0.715 GT:AD:DP:GQ:PL 0/1:46,31:77:99:654,0,1131 12 52965761 rs673449 C T 1162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=1.033;SOR=0.978 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,35:94:99:0|1:52965761_C_T:1191,0,2705 12 52965782 rs673476 T C 1115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=5.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-0.246;SOR=1.417 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,32:85:99:0|1:52965761_C_T:1144,0,2543 12 52966390 rs11170176 A T 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=-0.251;SOR=0.918 GT:AD:DP:GQ:PL 0/1:133,100:233:99:2296,0,3416 12 52966428 rs11170177 G C 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.843;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-0.609;SOR=0.879 GT:AD:DP:GQ:PL 0/1:113,72:185:99:1720,0,3021 12 52985293 rs12824366 A G 2307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.741;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.6;QD=10.73;ReadPosRankSum=2.091;SOR=0.682 GT:AD:DP:GQ:PL 0/1:120,95:215:99:2336,0,2878 12 52986187 rs12833456 T C 1123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-1.249;SOR=0.631 GT:AD:DP:GQ:PL 0/1:53,51:104:99:1152,0,1211 12 52992812 rs11170187 T C 2245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-1.869;SOR=0.523 GT:AD:DP:GQ:PL 0/1:97,100:197:99:2274,0,2248 12 52994955 rs61747192 G A 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.729;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=0.717;SOR=0.796 GT:AD:DP:GQ:PL 0/1:116,107:223:99:2859,0,2908 12 53003059 rs35061049 G T 931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.083;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.239;SOR=0.693 GT:AD:DP:GQ:PL 0/1:36,40:76:99:960,0,721 12 53011955 rs61736102 G A 3349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=3.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=1.618;SOR=0.915 GT:AD:DP:GQ:PL 0/1:143,141:284:99:3378,0,3545 12 53045626 rs2634041 T C 2947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=7.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.743;SOR=0.548 GT:AD:DP:GQ:PL 0/1:103,127:230:99:2976,0,2456 12 53045777 rs11835758 G A 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.8;ReadPosRankSum=-0.655;SOR=0.68 GT:AD:DP:GQ:PL 0/1:106,71:177:99:1585,0,2747 12 53069222 rs267607656 CACCTCCGGAGCCGTAGCTGCT C 14248.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.626;ClippingRankSum=0;DB;DP=509;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=64.22;MQRankSum=1.512;QD=31.95;ReadPosRankSum=0.083;SOR=0.469 GT:AD:DP:GQ:PL 1/1:3,443:446:99:14286,1258,0 12 53070121 rs698170 T G 5200.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5229,498,0 12 53070145 rs936958 G A 5421.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5450,543,0 12 53085089 rs636127 T C 9766.77 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,323:323:99:9795,968,0 12 53086645 rs3782489 G A 1633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.065;SOR=0.488 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1662,0,2190 12 53090190 rs7138818 C T 1428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.633;SOR=0.682 GT:AD:DP:GQ:PL 0/1:71,66:137:99:1457,0,1708 12 53091566 rs1567759 C A 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.555;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.331;SOR=0.831 GT:AD:DP:GQ:PL 0/1:88,85:173:99:1983,0,1914 12 53096913 rs1625862 G A 4407.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4436,421,0 12 53162528 rs2280480 G A 4965.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4994,530,0 12 53162773 rs1464423 A G 716.77 PASS AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.58;SOR=1.931 GT:AD:DP:GQ:PL 1/1:0,22:22:66:745,66,0 12 53165940 rs6580904 C T 4463.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4492,444,0 12 53167395 rs11170271 C T 2670.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2699,273,0 12 53185492 rs61929765 C T 1179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=-0.614;SOR=0.69 GT:AD:DP:GQ:PL 0/1:71,55:126:99:1208,0,1901 12 53186088 rs3887954 G C 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.75;ReadPosRankSum=0.822;SOR=0.585 GT:AD:DP:GQ:PL 0/1:68,40:108:99:865,0,1782 12 53186122 rs4432093 G A 854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.143;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.43;ReadPosRankSum=-0.068;SOR=0.682 GT:AD:DP:GQ:PL 0/1:68,47:115:99:883,0,1855 12 53189696 rs28721426 C G 4716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.764;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.383;SOR=0.827 GT:AD:DP:GQ:PL 0/1:180,186:366:99:4745,0,4460 12 53201413 rs931479 T C 4968.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=1.373 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4997,483,0 12 53202183 rs7956809 C G 3522.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3551,354,0 12 53204614 rs2307027 C T 2215.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2244,230,0 12 53205757 rs7959052 T C 2973.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.79;SOR=1.106 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3002,320,0 12 53207583 rs11267392 C CCACCAAAGCCACCAGTGCCGAAACCAGCTCCGAAGCCGCCGG 3844.73 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=55.72;SOR=2.406 GT:AD:DP:GQ:PL 1/1:0,69:69:99:3882,235,0 12 53207628 rs2638525 G A 4081.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.8;QD=31.89;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4110,383,0 12 53217701 rs10876354 C A 1781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.251;SOR=0.912 GT:AD:DP:GQ:PL 0/1:103,74:177:99:1810,0,2871 12 53227788 rs139252457 C T 2270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=5.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-1.929;SOR=0.908 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,89:189:99:0|1:53227788_C_T:2299,0,2544 12 53227803 rs2638497 A G 7006.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.68;SOR=0.768 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,191:191:99:1|1:53227788_C_T:7035,579,0 12 53242440 rs2013335 A G 5140.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5169,485,0 12 53294381 rs8608 T C 777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-0.906;SOR=0.589 GT:AD:DP:GQ:PL 0/1:42,37:79:99:806,0,950 12 53342945 . C CTGT 133.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.471;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=7.854;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=-8.887;QD=1.09;ReadPosRankSum=-2.92;SOR=2.018 GT:AD:DP:GQ:PGT:PID:PL 0/1:114,9:123:99:0|1:53342939_T_C:171,0,5769 12 53342951 rs201179094 G A 192.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.225;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=5.81;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=-10.485;QD=1.38;ReadPosRankSum=-3.476;SOR=1.619 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,16:140:99:0|1:53342939_T_C:221,0,5888 12 53342968 rs76301931 C T 180.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-11.185;QD=1.2;ReadPosRankSum=-2.364;SOR=0.836 GT:AD:DP:GQ:PL 0/1:130,21:151:99:209,0,3828 12 53343005 rs80354424 G A 722.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.5;MQ=58.57;MQRankSum=-13.152;QD=3.65;ReadPosRankSum=3.211;SOR=0.916 GT:AD:DP:GQ:PGT:PID:PL 0/1:168,30:198:99:0|1:53343005_G_A:751,0,6964 12 53343007 rs79476176 G A 722.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.5;MQ=58.57;MQRankSum=-13.152;QD=3.65;ReadPosRankSum=3.255;SOR=0.916 GT:AD:DP:GQ:PGT:PID:PL 0/1:168,30:198:99:0|1:53343005_G_A:751,0,6964 12 53343033 rs78514003 G A 791.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.783;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.5;MQ=58.46;MQRankSum=-13.395;QD=3.88;ReadPosRankSum=2.199;SOR=0.944 GT:AD:DP:GQ:PGT:PID:PL 0/1:172,32:204:99:0|1:53343033_G_A:820,0,7157 12 53343036 rs77825282 C T 791.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.865;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=-13.361;QD=3.9;ReadPosRankSum=1.791;SOR=0.956 GT:AD:DP:GQ:PGT:PID:PL 0/1:171,32:203:99:0|1:53343033_G_A:820,0,7190 12 53343040 rs74379840 C A 821.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.255;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=-13.615;QD=3.91;ReadPosRankSum=1.322;SOR=1.054 GT:AD:DP:GQ:PGT:PID:PL 0/1:177,33:210:99:0|1:53343033_G_A:850,0,7375 12 53343051 rs74953757 G T 848.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=-13.615;QD=4.04;ReadPosRankSum=-0.105;SOR=0.795 GT:AD:DP:GQ:PGT:PID:PL 0/1:177,33:210:99:0|1:53343033_G_A:877,0,7582 12 53343059 rs78343594 C A 809.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.45;MQRankSum=-13.783;QD=3.77;ReadPosRankSum=-0.732;SOR=0.627 GT:AD:DP:GQ:PGT:PID:PL 0/1:182,33:215:99:0|1:53343033_G_A:838,0,7543 12 53343069 rs77999286 G T 854.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.31;MQRankSum=-13.615;QD=4.07;ReadPosRankSum=-1.551;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:177,33:210:99:0|1:53343033_G_A:883,0,7498 12 53343071 rs75380684 C T 866.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.17;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.5;MQ=58.29;MQRankSum=-13.428;QD=4.23;ReadPosRankSum=-1.622;SOR=0.557 GT:AD:DP:GQ:PGT:PID:PL 0/1:173,32:205:99:0|1:53343033_G_A:895,0,7330 12 53343074 rs75174163 T C 827.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.5;MQ=58.21;MQRankSum=-13.376;QD=4.08;ReadPosRankSum=-2.172;SOR=0.513 GT:AD:DP:GQ:PGT:PID:PL 0/1:170,33:203:99:0|1:53343033_G_A:856,0,7291 12 53343084 rs75441140 G C 803.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.5;MQ=57.9;MQRankSum=-13.895;QD=4.1;ReadPosRankSum=-2.175;SOR=0.66 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,31:196:99:0|1:53343033_G_A:832,0,7042 12 53343098 rs80004568 C T 698.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.169;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.5;MQ=57.86;MQRankSum=-13.623;QD=3.72;ReadPosRankSum=-1.348;SOR=0.971 GT:AD:DP:GQ:PGT:PID:PL 0/1:162,26:188:99:0|1:53343033_G_A:727,0,6757 12 53343105 rs78479490 C T 459.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.074;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=8.679;MLEAC=1;MLEAF=0.5;MQ=58.02;MQRankSum=-12.85;QD=2.42;ReadPosRankSum=-0.09;SOR=1.303 GT:AD:DP:GQ:PL 0/1:168,22:193:99:488,0,7104 12 53343120 rs78718957 A C 221.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.802;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=3.237;MLEAC=1;MLEAF=0.5;MQ=58.24;MQRankSum=-14.009;QD=1.12;ReadPosRankSum=1.957;SOR=0.969 GT:AD:DP:GQ:PGT:PID:PL 0/1:179,19:198:99:0|1:53343033_G_A:250,0,7585 12 53343124 rs76183244 G A 302.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.5;MQ=58.14;MQRankSum=-13.866;QD=1.56;ReadPosRankSum=1.652;SOR=0.953 GT:AD:DP:GQ:PGT:PID:PL 0/1:175,19:194:99:0|1:53343033_G_A:331,0,7621 12 53343131 . G GA 371.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.891;ClippingRankSum=0;DP=190;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.5;MQ=57.77;MQRankSum=-13.712;QD=1.96;ReadPosRankSum=0.478;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 0/1:168,22:190:99:0|1:53343033_G_A:409,0,7114 12 53343132 . G T 380.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.904;ClippingRankSum=0;DP=185;ExcessHet=3.0103;FS=3.008;MLEAC=1;MLEAF=0.5;MQ=57.71;MQRankSum=-13.527;QD=2.06;ReadPosRankSum=0.433;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,22:185:99:0|1:53343033_G_A:409,0,7114 12 53343134 rs76187914 G T 395.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.48;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.5;MQ=57.73;MQRankSum=-13.602;QD=2.12;ReadPosRankSum=0.696;SOR=0.772 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,22:187:99:0|1:53343033_G_A:424,0,6904 12 53343148 . C G 389.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.714;ClippingRankSum=0;DP=186;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.5;MQ=57.67;MQRankSum=-13.564;QD=2.1;ReadPosRankSum=0.658;SOR=0.78 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,22:186:99:0|1:53343033_G_A:418,0,6988 12 53343152 rs79913669 C G 380.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.309;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.5;MQ=57.69;MQRankSum=-13.601;QD=2.04;ReadPosRankSum=0.608;SOR=0.826 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,22:187:99:0|1:53343033_G_A:409,0,7098 12 53343158 rs77364359 A G 392.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.785;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.5;MQ=57.69;MQRankSum=-13.601;QD=2.1;ReadPosRankSum=0.115;SOR=0.826 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,22:187:99:0|1:53343033_G_A:421,0,6880 12 53343209 rs79346135 G A 334.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.79;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=9.12;MLEAC=1;MLEAF=0.5;MQ=57.6;MQRankSum=-14.212;QD=1.64;ReadPosRankSum=0.358;SOR=1.373 GT:AD:DP:GQ:PGT:PID:PL 0/1:181,23:204:99:0|1:53343209_G_A:363,0,7490 12 53343225 . C T 224.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DP=212;ExcessHet=3.0103;FS=9.957;MLEAC=1;MLEAF=0.5;MQ=57.96;MQRankSum=-14.5;QD=1.06;ReadPosRankSum=1.245;SOR=1.714 GT:AD:DP:GQ:PGT:PID:PL 0/1:192,20:212:99:0|1:53343209_G_A:253,0,8128 12 53343231 . G C 134.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DP=208;ExcessHet=3.0103;FS=10.738;MLEAC=1;MLEAF=0.5;MQ=58.16;MQRankSum=-14.365;QD=0.65;ReadPosRankSum=1.894;SOR=1.857 GT:AD:DP:GQ:PGT:PID:PL 0/1:190,18:208:99:0|1:53343209_G_A:163,0,8218 12 53343236 . T C 140.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.74;ClippingRankSum=0;DP=209;ExcessHet=3.0103;FS=10.58;MLEAC=1;MLEAF=0.5;MQ=58.17;MQRankSum=-14.4;QD=0.67;ReadPosRankSum=1.927;SOR=1.846 GT:AD:DP:GQ:PGT:PID:PL 0/1:191,18:209:99:0|1:53343209_G_A:169,0,8134 12 53343257 . C G 128.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.413;ClippingRankSum=0;DP=199;ExcessHet=3.0103;FS=11.304;MLEAC=1;MLEAF=0.5;MQ=58.2;MQRankSum=-14.049;QD=0.65;ReadPosRankSum=0.64;SOR=2.027 GT:AD:DP:GQ:PGT:PID:PL 0/1:182,17:199:99:0|1:53343209_G_A:157,0,7717 12 53343265 . C A 107.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0;DP=202;ExcessHet=3.0103;FS=11.331;MLEAC=1;MLEAF=0.5;MQ=58.23;MQRankSum=-14.156;QD=0.53;ReadPosRankSum=-0.19;SOR=2.048 GT:AD:DP:GQ:PGT:PID:PL 0/1:185,17:202:99:0|1:53343209_G_A:136,0,7980 12 53343266 . C T 110.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DP=203;ExcessHet=3.0103;FS=11.221;MLEAC=1;MLEAF=0.5;MQ=58.24;MQRankSum=-14.191;QD=0.55;ReadPosRankSum=-0.308;SOR=1.993 GT:AD:DP:GQ:PGT:PID:PL 0/1:186,17:203:99:0|1:53343209_G_A:139,0,7938 12 53343273 rs11551638 C T 140.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.271;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=9.097;MLEAC=1;MLEAF=0.5;MQ=58.2;MQRankSum=-14.014;QD=0.71;ReadPosRankSum=-1.253;SOR=1.894 GT:AD:DP:GQ:PGT:PID:PL 0/1:181,17:198:99:0|1:53343209_G_A:169,0,7488 12 53433089 rs1548204 C A 3921.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3950,408,0 12 53433486 rs8916 C T 3335.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3364,351,0 12 53453456 rs34044566 C T 3959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.987;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=2.997;SOR=0.685 GT:AD:DP:GQ:PL 0/1:175,166:341:99:3988,0,4711 12 53455042 rs117152710 A G 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.284;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=-0.422;SOR=0.904 GT:AD:DP:GQ:PL 0/1:98,88:186:99:2751,0,2359 12 53457618 rs12816417 C T 2457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.104;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=2.098;SOR=0.749 GT:AD:DP:GQ:PL 0/1:125,100:225:99:2486,0,3044 12 53468419 rs2277329 T G 1945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=1.172;SOR=0.804 GT:AD:DP:GQ:PL 0/1:88,84:172:99:1974,0,2095 12 53509339 rs3219199 G T 4974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.22;ReadPosRankSum=0.389;SOR=0.739 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,131:273:99:0|1:53509339_G_T:5003,0,6415 12 53509340 rs3219200 C T 4974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.43;ReadPosRankSum=0.895;SOR=0.757 GT:AD:DP:GQ:PGT:PID:PL 0/1:141,129:270:99:0|1:53509339_G_T:5003,0,6415 12 53509933 rs2272296 C T 815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-1.024;SOR=0.759 GT:AD:DP:GQ:PL 0/1:45,37:82:99:844,0,1084 12 53552475 rs12161793 A G 1527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.964;SOR=1.022 GT:AD:DP:GQ:PL 0/1:69,62:131:99:1556,0,1700 12 53563865 rs11170453 G A 1336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.532;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=0.981;SOR=0.716 GT:AD:DP:GQ:PL 0/1:41,56:97:99:1365,0,911 12 53589511 rs11574539 A G 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=1.901;SOR=0.524 GT:AD:DP:GQ:PL 0/1:35,50:85:99:1244,0,831 12 53647373 rs10876422 T C 3704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.225;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.018;SOR=0.533 GT:AD:DP:GQ:PL 0/1:127,128:255:99:3733,0,3220 12 53662624 rs6580942 C A 2263.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2292,235,0 12 53664148 rs4758963 G A 1422.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.464 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1451,138,0 12 53670545 rs1318648 C A 5725.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5754,558,0 12 53681883 rs1110719 A T 5528.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5557,527,0 12 53682326 rs1110720 G A 4131.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=31.54;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4160,393,0 12 53682986 rs3214023 C T 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=-2.034;SOR=0.666 GT:AD:DP:GQ:PL 0/1:97,66:163:99:1527,0,2576 12 53686703 rs1056685 G A 4909.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4938,512,0 12 53691944 rs142144136 T C 705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.133;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.263;SOR=1.017 GT:AD:DP:GQ:PL 0/1:39,31:70:99:734,0,890 12 53693532 rs1534284 A G 8561.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.3;SOR=1.635 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,189:189:99:1|1:53693532_A_G:8590,581,0 12 53693533 rs1534283 A C 8561.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.36;SOR=1.647 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,193:193:99:1|1:53693532_A_G:8590,581,0 12 53700848 rs1534282 C T 6463.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6492,648,0 12 53700860 rs711316 A G 6649.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6678,640,0 12 53703021 rs1546808 G A 5323.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5352,555,0 12 53714496 rs4759231 A G 4874.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4903,486,0 12 53722098 rs7138938 A G 8627.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8656,866,0 12 53722128 rs7139272 G A 7399.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7428,728,0 12 53777171 rs3741651 A G 2942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.698;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=5.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=0.776;SOR=0.711 GT:AD:DP:GQ:PL 0/1:101,110:211:99:2971,0,2529 12 53819467 rs2071558 C T 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.66;ReadPosRankSum=0.629;SOR=0.444 GT:AD:DP:GQ:PL 0/1:43,72:115:99:2059,0,1114 12 53822670 rs3741664 G A 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.795;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.181;SOR=0.806 GT:AD:DP:GQ:PL 0/1:39,39:78:99:964,0,944 12 54109733 rs3741658 A G 2456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.355;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.456;SOR=0.799 GT:AD:DP:GQ:PL 0/1:121,97:218:99:2485,0,3001 12 54332751 rs202210130 G A 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.717;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=12.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.564;SOR=1.535 GT:AD:DP:GQ:PL 0/1:106,71:177:99:1726,0,2601 12 54339052 rs4759058 C A 1936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.391;SOR=0.906 GT:AD:DP:GQ:PL 0/1:71,80:151:99:1965,0,1858 12 54367061 rs4759315 T G 5474.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.204 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5503,554,0 12 54367690 rs12427129 C T 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.135;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=7.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=0.116;SOR=1.247 GT:AD:DP:GQ:PL 0/1:93,59:152:99:1394,0,2200 12 54379670 rs4564384 C T 3322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-2.286;SOR=0.787 GT:AD:DP:GQ:PL 0/1:157,135:292:99:3351,0,4229 12 54405179 rs375330102 AC A 745.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.365;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.62;ReadPosRankSum=1.076;SOR=0.337 GT:AD:DP:GQ:PL 0/1:9,29:51:99:721,0,157 12 54799450 rs1249378 A G 3927.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3956,408,0 12 54805753 rs1922254 G T 1828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.33;ReadPosRankSum=-0.421;SOR=0.642 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,51:112:99:0|1:54805753_G_T:1857,0,3506 12 54805765 rs1249181 C T 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.67;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.36;ReadPosRankSum=1.185;SOR=0.665 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,47:106:99:0|1:54805753_G_T:1762,0,3423 12 54905815 rs2458409 C G 6107.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.074 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6136,602,0 12 54913136 rs11831997 T G 1476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.853;QD=15.88;ReadPosRankSum=0.794;SOR=0.722 GT:AD:DP:GQ:PL 0/1:38,55:93:99:1505,0,927 12 54966381 . G A 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-1.901;SOR=0.624 GT:AD:DP:GQ:PL 0/1:45,53:98:99:1279,0,1063 12 54970454 rs1249950 T C 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.716;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.885;SOR=0.533 GT:AD:DP:GQ:PL 0/1:91,60:151:99:1421,0,2351 12 54975837 rs1249958 T C 5952.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5981,591,0 12 55250612 rs1349910 A G 3740.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3769,360,0 12 55523586 rs58036029 AT A 611.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.871;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=1.657;SOR=0.976 GT:AD:DP:GQ:PL 0/1:34,26:60:99:649,0,923 12 55523685 rs12303066 C T 960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=4.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=0.662;SOR=0.956 GT:AD:DP:GQ:PL 0/1:62,45:107:99:989,0,1551 12 55523860 rs7305779 A C 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.417;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=0.921;SOR=0.744 GT:AD:DP:GQ:PL 0/1:53,61:114:99:1599,0,1212 12 55524172 rs7306491 G A 1647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=0.505;SOR=0.966 GT:AD:DP:GQ:PL 0/1:80,75:155:99:1676,0,1909 12 55524314 rs7137261 T C 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.245;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-0.099;SOR=0.503 GT:AD:DP:GQ:PL 0/1:63,49:112:99:1181,0,1638 12 55641075 rs7301705 A G 665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.092;SOR=0.84 GT:AD:DP:GQ:PL 0/1:33,30:63:99:694,0,864 12 55641255 rs4522268 C T 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.079;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=2.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=0.609;SOR=0.839 GT:AD:DP:GQ:PL 0/1:72,44:116:99:1108,0,1832 12 55641295 rs4388990 A G 1136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-1.65;SOR=0.822 GT:AD:DP:GQ:PL 0/1:60,46:106:99:1165,0,1466 12 55641328 rs6581025 G A 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.166;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=8.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-1.845;SOR=1.268 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1416,0,1313 12 55688267 rs7308594 G A 2508.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2537,243,0 12 55714406 rs5798345 C CA 3191.73 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.69;SOR=1.429 GT:AD:DP:GQ:PL 1/1:0,87:87:99:3229,262,0 12 55714772 rs7132431 G A 4003.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4032,402,0 12 55714876 rs7132347 C G 4194.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.03;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4223,381,0 12 55715119 rs7132916 G A 3231.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3260,312,0 12 55794976 rs7971073 A G 4630.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.08;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4659,420,0 12 55820121 rs6581046 C T 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=7.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.133;SOR=0.293 GT:AD:DP:GQ:PL 0/1:55,56:111:99:1383,0,1417 12 55820958 rs57387180 CA C 465.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.17;ReadPosRankSum=-1.237;SOR=0.674 GT:AD:DP:GQ:PL 0/1:30,27:66:99:503,0,654 12 55863381 rs10747756 A G 1236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.81;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.462;SOR=0.702 GT:AD:DP:GQ:PL 0/1:57,45:102:99:1265,0,1564 12 55863398 rs12313730 G A 1085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=0.664;SOR=0.726 GT:AD:DP:GQ:PL 0/1:64,46:110:99:1114,0,1770 12 55886294 rs7133698 G A 758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.71;ReadPosRankSum=-0.02;SOR=0.629 GT:AD:DP:GQ:PL 0/1:89,44:133:99:787,0,2242 12 55886487 rs143417536 A C 914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.121;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=1.296;SOR=0.639 GT:AD:DP:GQ:PL 0/1:57,41:98:99:943,0,1472 12 55945119 rs7313899 A G 3109.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.39;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3138,288,0 12 56030938 rs10876838 C T 2826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.55;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=4.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=-0.363;SOR=0.443 GT:AD:DP:GQ:PL 0/1:76,113:189:99:2855,0,1690 12 56031273 rs7970885 G A 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=1.35;SOR=0.551 GT:AD:DP:GQ:PL 0/1:86,81:167:99:1967,0,2304 12 56079084 rs3852533 C G 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.41;ReadPosRankSum=-1.245;SOR=0.519 GT:AD:DP:GQ:PL 0/1:41,63:104:99:1735,0,1062 12 56088773 rs2293410 C T 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.192;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=1.568;SOR=0.431 GT:AD:DP:GQ:PL 0/1:58,76:134:99:1786,0,1641 12 56089357 rs1800974 C T 738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.376;SOR=0.759 GT:AD:DP:GQ:PL 0/1:51,35:86:99:767,0,1206 12 56091617 rs2293412 A G 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.732;SOR=0.699 GT:AD:DP:GQ:PL 0/1:105,81:186:99:2097,0,2748 12 56096816 rs2293413 T C 3325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=5.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.38;ReadPosRankSum=-1.17;SOR=0.417 GT:AD:DP:GQ:PL 0/1:81,122:203:99:3354,0,2110 12 56182846 rs3741504 G C 1174.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1203,123,0 12 56236531 rs7294345 A G 3799.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3828,402,0 12 56295734 rs7302270 A G 7602.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7631,705,0 12 56335107 rs1136082 A G 3658.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3687,351,0 12 56348028 rs1052206 G A 3779.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3808,397,0 12 56398454 rs773115 G C 6982.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,223:223:99:7011,669,0 12 56428344 rs2452822 G C 3616.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3645,330,0 12 56493822 rs2292238 A C 3632.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3661,357,0 12 56494991 rs2271189 G A 6477.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.011;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.44;ReadPosRankSum=-0.519;SOR=0.25 GT:AD:DP:GQ:PL 1/1:1,219:220:99:6506,615,0 12 56625045 rs1274497 T C 3918.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.628 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3947,374,0 12 56647911 rs808919 G C 7224.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7253,729,0 12 56649601 rs1274490 A G 6934.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6963,711,0 12 56722060 rs1918496 T G 4492.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4521,444,0 12 56814653 rs2291739 G A 5364.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5393,546,0 12 56815281 rs2291738 T C 3529.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.971;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.91;ReadPosRankSum=0.74;SOR=1.397 GT:AD:DP:GQ:PL 1/1:2,116:118:99:3558,304,0 12 56827694 rs2279665 C G 4776.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4805,476,0 12 56827974 rs2638312 C T 2064.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=1.362 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2093,213,0 12 56862886 rs2657881 T C 7070.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7099,702,0 12 56956213 rs3759091 T C 4011.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.78;QD=30.39;SOR=1.205 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4040,395,0 12 57106660 rs4788 A T 6374.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6403,635,0 12 57108203 rs4902 A G 3428.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3457,339,0 12 57109792 rs2958149 A G 8307.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8336,840,0 12 57109931 rs2926747 A T 6472.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=1.2 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6501,657,0 12 57114100 rs2926743 A G 5639.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5668,518,0 12 57114307 rs2958127 A T 6489.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6518,615,0 12 57133140 rs1131514 T G 2894.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2923,288,0 12 57390038 rs35493121 T C 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.587;SOR=0.749 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1682,0,1773 12 57397033 rs61752546 C T 2708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.13;SOR=0.723 GT:AD:DP:GQ:PL 0/1:159,118:277:99:2737,0,3804 12 57422934 rs17119344 G A 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.3;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=1.427;SOR=0.863 GT:AD:DP:GQ:PL 0/1:128,99:227:99:2286,0,3383 12 57430534 rs150719590 CCT C 922.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.508;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=0.387;SOR=0.685 GT:AD:DP:GQ:PL 0/1:46,41:87:99:960,0,1646 12 57585144 rs1800139 C T 5012.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5041,509,0 12 57589784 rs7397167 A C 9099.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,284:284:99:9128,853,0 12 57589865 rs1800189 C T 7776.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7805,759,0 12 57590869 rs7308698 T C 7207.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7236,757,0 12 57593101 rs1140648 G A 6355.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6384,650,0 12 57619209 rs7979061 C G 6204.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.141;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.97;ReadPosRankSum=-0.816;SOR=0.894 GT:AD:DP:GQ:PL 1/1:2,205:207:99:6233,531,0 12 57637593 rs3204635 G A 1581.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1610,156,0 12 57649840 rs4075325 C T 2714.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2743,275,0 12 57870648 rs512490 A G 3992.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=27.92;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4021,428,0 12 57985204 rs11537654 C T 7852.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7881,772,0 12 57994743 rs775235 T G 9569.77 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,325:325:99:9598,974,0 12 57995089 rs812873 T C 4437.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4466,450,0 12 58010163 rs1564374 A G 7511.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7540,779,0 12 58017701 rs7314152 T G 4451.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4480,458,0 12 58019472 rs774895 T G 7630.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7659,782,0 12 58128183 . C T 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-0.579;SOR=0.627 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1279,0,1474 12 58149446 rs1689582 C T 6382.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6411,640,0 12 58166590 rs34913183 C T 2659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=1.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.671;SOR=0.599 GT:AD:DP:GQ:PL 0/1:131,116:249:99:2688,0,3284 12 58174275 rs111299874 T C 3103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.498;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=1.043;SOR=0.802 GT:AD:DP:GQ:PL 0/1:120,118:238:99:3132,0,3070 12 58174306 rs923829 T C 7076.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7105,678,0 12 58176614 rs10747783 T C 4380.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4409,448,0 12 58204283 rs2172521 T C 5700.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5729,549,0 12 58335626 rs3751325 A T 3456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.506;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=2.271;SOR=1.091 GT:AD:DP:GQ:PL 0/1:134,135:269:99:3485,0,3377 12 58350631 rs10122 C T 1586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.619;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=1.177;SOR=0.787 GT:AD:DP:GQ:PL 0/1:87,71:158:99:1615,0,2077 12 60173356 rs3763980 A T 787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.24;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=-0.296;SOR=0.84 GT:AD:DP:GQ:PL 0/1:55,35:90:99:816,0,1417 12 62778065 rs2044846 A G 2825.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2854,287,0 12 62861111 rs6581450 T C 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-1.278;SOR=0.678 GT:AD:DP:GQ:PL 0/1:51,58:109:99:1340,0,1209 12 62926398 rs7957417 G A 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.37;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=0.468;SOR=0.86 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1407,0,1574 12 62928633 rs10219555 G A 669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.15;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=-1.611;QD=10.3;ReadPosRankSum=-1.263;SOR=0.395 GT:AD:DP:GQ:PL 0/1:35,30:65:99:698,0,870 12 62959137 rs11174549 A G 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.503;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=0.749;SOR=0.725 GT:AD:DP:GQ:PL 0/1:48,34:82:99:748,0,1073 12 62972210 rs5798648 G GT 361.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.09;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-2.85;SOR=1.136 GT:AD:DP:GQ:PL 0/1:17,18:39:99:399,0,274 12 64020310 . T TAA 551.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.403;ClippingRankSum=0;DP=76;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=57.76;MQRankSum=-1.254;QD=9.68;ReadPosRankSum=1.839;SOR=0.482 GT:AD:DP:GQ:PL 0/1:43,14:68:99:589,0,2251 12 64020321 rs7310030 C A 526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.8;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.694;MLEAC=1;MLEAF=0.5;MQ=58.84;MQRankSum=-2.112;QD=7.53;ReadPosRankSum=0.988;SOR=0.682 GT:AD:DP:GQ:PL 0/1:50,20:70:99:555,0,2071 12 64062023 rs10878073 A C 4079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.033;SOR=0.707 GT:AD:DP:GQ:PL 0/1:186,177:363:99:4108,0,4419 12 64062052 rs10878074 G A 4347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=0.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-3.055;SOR=0.655 GT:AD:DP:GQ:PL 0/1:201,199:400:99:4376,0,4559 12 64062065 rs10878075 T C 4228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.287;ClippingRankSum=0;DB;DP=393;ExcessHet=3.0103;FS=0.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-1.962;SOR=0.661 GT:AD:DP:GQ:PL 0/1:201,191:392:99:4257,0,4297 12 64383670 rs3741607 T C 1065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=-0.248;SOR=0.567 GT:AD:DP:GQ:PL 0/1:31,41:72:99:1094,0,750 12 64472803 rs789710 A T 6174.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6203,636,0 12 64519806 rs789722 T C 3161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-0.005;SOR=0.902 GT:AD:DP:GQ:PL 0/1:101,141:242:99:3190,0,2286 12 64587633 rs699638 C A 6025.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6054,570,0 12 64609562 rs2335390 C T 5688.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5717,594,0 12 64669090 rs1002392 C A 195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.83;ReadPosRankSum=-0.964;SOR=0.807 GT:AD:DP:GQ:PL 0/1:16,9:25:99:224,0,421 12 64712511 rs7955105 A G 7129.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7158,672,0 12 64712546 rs113411861 A AGTT 5588.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.83;ReadPosRankSum=0.378;SOR=0.565 GT:AD:DP:GQ:PL 0/1:114,142:256:99:5626,0,4357 12 64724815 rs11392869 T TA 538.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.266;SOR=0.913 GT:AD:DP:GQ:PL 0/1:30,26:59:99:576,0,553 12 64803798 rs11175383 A C 450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.231;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.017;SOR=0.813 GT:AD:DP:GQ:PL 0/1:21,18:39:99:479,0,522 12 64838922 rs6581565 G T 1085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.71;SOR=0.458 GT:AD:DP:GQ:PL 0/1:50,49:99:99:1114,0,1091 12 64849716 rs41292019 T C 1120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=1.547;SOR=1.027 GT:AD:DP:GQ:PL 0/1:57,50:107:99:1149,0,1321 12 64858100 rs57810028 A AT 1321.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.6;ReadPosRankSum=-0.814;SOR=1.22 GT:AD:DP:GQ:PL 1/1:4,52:58:75:1359,75,0 12 64875787 rs7486100 T A 1032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=1.156;SOR=0.726 GT:AD:DP:GQ:PL 0/1:68,49:117:99:1061,0,1632 12 65004520 rs77813527 A G 1681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.811;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.596;SOR=0.783 GT:AD:DP:GQ:PL 0/1:65,66:131:99:1710,0,1501 12 65146532 rs1147096 C T 358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=1.517;SOR=0.776 GT:AD:DP:GQ:PL 0/1:27,19:46:99:387,0,646 12 65150485 rs2620733 C T 560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.527;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.697;SOR=0.907 GT:AD:DP:GQ:PL 0/1:23,24:47:99:589,0,523 12 65224174 rs61730726 A G 1624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.002;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=5.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.648;SOR=0.94 GT:AD:DP:GQ:PL 0/1:55,70:125:99:1653,0,1411 12 65514266 rs7301320 T C 2108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=2.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.125;SOR=0.724 GT:AD:DP:GQ:PL 0/1:97,89:186:99:2137,0,2195 12 65563712 rs61736594 C T 2388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.13;ReadPosRankSum=-2.074;SOR=0.659 GT:AD:DP:GQ:PL 0/1:76,93:169:99:2417,0,2039 12 66546100 rs8793 A G 3499.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3528,353,0 12 66605228 rs1152888 A G 2101.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2130,204,0 12 66696410 rs3741604 C T 1898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.423;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.549;SOR=0.645 GT:AD:DP:GQ:PL 0/1:69,76:145:99:1927,0,1992 12 66698895 rs4430553 T C 632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.26;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=0.873;SOR=1.211 GT:AD:DP:GQ:PL 0/1:29,23:52:99:661,0,737 12 66786073 rs7970076 A G 1652.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.524 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1681,159,0 12 66786091 rs13277 G C 2108.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.01;SOR=1.647 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2137,186,0 12 66814487 rs7397862 C A 1047.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1076,111,0 12 66859221 rs12820901 T C 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.185;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.73;ReadPosRankSum=0.118;SOR=0.593 GT:AD:DP:GQ:PL 0/1:27,40:67:99:1216,0,667 12 66909389 rs12316942 C T 2228.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2257,225,0 12 66911771 rs11838180 G T 1182.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.88;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1211,132,0 12 67706466 rs1060350 G A 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=0.806;SOR=0.513 GT:AD:DP:GQ:PL 0/1:43,51:94:99:1219,0,1142 12 68052178 rs3741644 G T 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=4.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-2.58;SOR=0.946 GT:AD:DP:GQ:PL 0/1:167,118:285:99:2715,0,4500 12 68552041 rs79723178 TAA T,TA 1072.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.533;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.38;MQRankSum=0.309;QD=22.82;ReadPosRankSum=-1.522;SOR=0.582 GT:AD:DP:GQ:PL 1/2:1,17,29:49:99:1110,608,661,388,0,278 12 68696661 . CAA C,CA 438.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=1.795;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.21;MQRankSum=0.46;QD=14.62;ReadPosRankSum=-0.399;SOR=0.594 GT:AD:DP:GQ:PL 1/2:5,11,14:39:99:476,111,286,139,0,173 12 68707287 rs2306392 G A 808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.985;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=3.792;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=-0.139;SOR=1.096 GT:AD:DP:GQ:PL 0/1:62,39:101:99:837,0,1435 12 68708761 rs2306393 C T 1613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=1.644;SOR=0.992 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1642,0,1578 12 68715417 rs7964052 G A 485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.048;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.38;ReadPosRankSum=-1.218;SOR=1.287 GT:AD:DP:GQ:PL 0/1:35,23:58:99:514,0,815 12 68719216 rs2870812 G A 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.058;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-2.317;SOR=0.437 GT:AD:DP:GQ:PL 0/1:58,53:111:99:1218,0,1391 12 68720627 rs962976 G A 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.067;SOR=0.872 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1845,0,1795 12 68724951 rs3741808 G T 1275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-1.928;SOR=0.844 GT:AD:DP:GQ:PL 0/1:39,54:93:99:1304,0,951 12 69082805 rs2259588 G A 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.57;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.946;SOR=0.683 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1181,0,1008 12 69115698 rs17851475 G A 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.338;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=7.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.506;SOR=1.315 GT:AD:DP:GQ:PL 0/1:73,60:133:99:1415,0,1783 12 69125513 rs7976871 G T 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.18;ReadPosRankSum=0.201;SOR=0.468 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,28:61:99:0|1:69125513_G_T:1076,0,1479 12 69125514 rs7976876 G T 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.18;ReadPosRankSum=0.163;SOR=0.468 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,28:61:99:0|1:69125513_G_T:1076,0,1479 12 69759551 rs11286051 AT A 507.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.68;ReadPosRankSum=-1.043;SOR=0.648 GT:AD:DP:GQ:PL 0/1:47,29:76:99:545,0,1139 12 69967862 rs547497 G A 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=2.45;SOR=0.582 GT:AD:DP:GQ:PL 0/1:49,60:109:99:1441,0,1181 12 69980141 rs484319 G C 428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.81;ReadPosRankSum=-0.957;SOR=0.745 GT:AD:DP:GQ:PL 0/1:40,23:63:99:457,0,999 12 70070942 rs710718 A G 4317.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4346,410,0 12 70091432 rs775429 T C 3071.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3100,294,0 12 70290921 rs10879039 C T 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.743;SOR=0.902 GT:AD:DP:GQ:PL 0/1:30,34:64:99:785,0,702 12 70321450 rs1239822 C T 870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.315;SOR=0.646 GT:AD:DP:GQ:PL 0/1:31,38:69:99:899,0,824 12 70330087 rs813147 A G 3531.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3560,348,0 12 70351684 rs10879065 C A 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.972;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.302;SOR=0.693 GT:AD:DP:GQ:PL 0/1:83,83:166:99:2029,0,2324 12 70352021 rs2307087 C T 760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.657;SOR=0.77 GT:AD:DP:GQ:PL 0/1:36,35:71:99:789,0,915 12 70928616 rs3752703 G A 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.21;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.126;SOR=0.73 GT:AD:DP:GQ:PL 0/1:70,67:137:99:1641,0,1844 12 70928724 rs582954 A G 4754.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4783,497,0 12 70963619 rs2304821 G A 1901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.79;SOR=0.881 GT:AD:DP:GQ:PL 0/1:92,85:177:99:1930,0,2167 12 70965592 rs75551762 C A 1423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.193;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=0.537;SOR=0.915 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1452,0,1768 12 70990054 rs2465811 T C 2488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=2.294;QD=13.24;ReadPosRankSum=-0.285;SOR=0.709 GT:AD:DP:GQ:PL 0/1:79,109:188:99:2517,0,1890 12 71002865 rs2717430 T A 5700.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5729,576,0 12 71002893 rs2252784 C T 5708.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5737,563,0 12 71003524 rs3217500 CTT C 3617.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.04;ReadPosRankSum=0.545;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 0/1:96,94:190:99:0|1:71003515_C_T:3655,0,5988 12 71016157 rs74343147 C T 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=1.506;SOR=0.855 GT:AD:DP:GQ:PL 0/1:112,117:229:99:2711,0,2677 12 71029431 rs2717417 C T 1430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.46;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.055;QD=11.09;ReadPosRankSum=-0.528;SOR=0.526 GT:AD:DP:GQ:PL 0/1:67,62:129:99:1459,0,1716 12 71029733 rs2584021 C T 3300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.024;SOR=0.76 GT:AD:DP:GQ:PL 0/1:148,151:299:99:3329,0,3424 12 71139664 rs3803036 T C 7937.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,264:264:99:7966,792,0 12 71519096 rs1051344 G C 921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.785;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.08;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.389;SOR=0.836 GT:AD:DP:GQ:PL 0/1:49,39:88:99:950,0,1128 12 71523134 rs1051334 A C 480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.719;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.089;SOR=0.709 GT:AD:DP:GQ:PL 0/1:23,19:42:99:509,0,547 12 71523199 rs143821581 TAA T 363.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.22;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=0.955;SOR=1.402 GT:AD:DP:GQ:PL 0/1:12,14:32:99:401,0,358 12 71533534 rs3763978 C G 1960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=1.669;SOR=0.643 GT:AD:DP:GQ:PL 0/1:106,87:193:99:1989,0,2580 12 71898412 rs117980085 C T 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=2.109;SOR=0.689 GT:AD:DP:GQ:PL 0/1:53,62:115:99:1387,0,1179 12 71960208 rs1797372 G A 2407.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2436,254,0 12 72004884 rs34631263 G GA 611.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.36;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.631;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.595;QD=8.16;ReadPosRankSum=1.68;SOR=0.703 GT:AD:DP:GQ:PL 0/1:39,36:103:99:649,0,781 12 72013832 rs1298463 A G 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.366;SOR=0.967 GT:AD:DP:GQ:PL 0/1:73,61:134:99:1336,0,1850 12 72028607 rs34399921 TA T 724.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.524;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.128;QD=6.09;ReadPosRankSum=0.721;SOR=0.659 GT:AD:DP:GQ:PL 0/1:73,46:132:99:762,0,1594 12 72030252 rs1149006 T C 1668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.162;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=-1.431;SOR=0.715 GT:AD:DP:GQ:PL 0/1:54,69:123:99:1697,0,1233 12 72067966 rs5799053 A AT 1111.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0;QD=12.78;ReadPosRankSum=0.966;SOR=0.452 GT:AD:DP:GQ:PL 0/1:35,52:107:99:1149,0,611 12 72288453 rs73140670 T C 1203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.031;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.24;ReadPosRankSum=0.431;SOR=0.97 GT:AD:DP:GQ:PL 0/1:36,43:79:99:1232,0,796 12 72372862 rs7305115 A G 6019.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6048,605,0 12 72416235 rs4290270 A T 2930.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2959,306,0 12 72956613 rs2272505 G A 637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.35;ReadPosRankSum=0.589;SOR=0.529 GT:AD:DP:GQ:PL 0/1:15,24:39:99:666,0,425 12 74932159 rs590352 G C 5130.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5159,501,0 12 75601389 rs61735712 G A 3774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.504;ClippingRankSum=0;DB;DP=357;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.487;SOR=0.62 GT:AD:DP:GQ:PL 0/1:202,155:357:99:3803,0,5689 12 75601443 rs61932914 G A 3840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.708;SOR=0.843 GT:AD:DP:GQ:PL 0/1:178,155:333:99:3869,0,4496 12 75692755 rs7296952 A T 1035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=-0.818;SOR=0.905 GT:AD:DP:GQ:PL 0/1:31,43:74:99:1064,0,747 12 75785100 rs11180483 C T 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.992;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=6.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.89;ReadPosRankSum=1.248;SOR=0.626 GT:AD:DP:GQ:PL 0/1:35,57:92:99:1490,0,1035 12 75816814 rs144850646 G GACA 1562.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.623;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.888;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.134;QD=16.62;ReadPosRankSum=-0.624;SOR=1.127 GT:AD:DP:GQ:PL 0/1:52,42:94:99:1600,0,2499 12 75884254 rs28932170 C T 258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.39;ReadPosRankSum=-1.332;SOR=0.597 GT:AD:DP:GQ:PL 0/1:22,13:35:99:287,0,625 12 75900382 rs11540407 C T 151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.33;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.92;ReadPosRankSum=-0.538;SOR=0.739 GT:AD:DP:GQ:PL 0/1:41,11:52:99:180,0,1043 12 75900396 rs201846221 CA C 321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=-0.484;SOR=0.559 GT:AD:DP:GQ:PL 0/1:5,17:31:78:338,0,78 12 75900588 rs2070162 A G 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.916;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=1.532;SOR=0.628 GT:AD:DP:GQ:PL 0/1:45,31:76:99:774,0,1163 12 75900702 rs2704766 G A 2271.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2300,240,0 12 76424937 rs71716769 TTGC T 5176.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.263;MLEAC=2;MLEAF=1;MQ=60.45;MQRankSum=0.623;QD=26.55;ReadPosRankSum=-1.23;SOR=0.426 GT:AD:DP:GQ:PL 1/1:10,185:201:99:5214,212,0 12 76449900 rs1059143 T C 4273.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4302,443,0 12 76453966 rs4663 G A 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=6.993;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=1.232;QD=10;ReadPosRankSum=-1.023;SOR=1.292 GT:AD:DP:GQ:PL 0/1:52,38:90:99:928,0,1339 12 76461137 rs10785227 T C 991.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.5;MQRankSum=1.455;QD=15.26;ReadPosRankSum=1.367;SOR=0.814 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,39:65:99:0|1:76461137_T_C:1020,0,591 12 76461145 rs7972289 C T 2744.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=36.6;SOR=1.164 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:76461137_T_C:2773,225,0 12 76461257 rs3214625 T TA 634.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.581;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.5;MQ=60.62;MQRankSum=2.464;QD=8.46;ReadPosRankSum=-1.498;SOR=1.145 GT:AD:DP:GQ:PL 0/1:41,34:77:99:672,0,803 12 76740149 rs35676114 G A 1918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.749;SOR=0.625 GT:AD:DP:GQ:PL 0/1:76,75:151:99:1947,0,2064 12 76763092 . G GAA 413.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=1.15;SOR=0.57 GT:AD:DP:GQ:PL 0/1:21,13:45:99:451,0,583 12 76780051 rs72247585 T TA 439.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.035;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=8.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.609;SOR=1.677 GT:AD:DP:GQ:PL 0/1:10,24:40:99:477,0,174 12 76786349 rs4761423 G A 2922.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2951,276,0 12 77216330 . ATT A,AT 744.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.346;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.27;MQRankSum=0.487;QD=14.89;ReadPosRankSum=0.522;SOR=0.871 GT:AD:DP:GQ:PL 1/2:5,18,27:57:99:782,298,551,218,0,245 12 77235768 rs33996476 A G 1315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.965;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.715;SOR=0.629 GT:AD:DP:GQ:PL 0/1:65,52:117:99:1344,0,1603 12 77254207 rs35557984 GA G 2888.73 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=25.79;SOR=1.25 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2926,341,0 12 77256681 rs2047227 T G 4701.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.792;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.15;ReadPosRankSum=-0.996;SOR=0.948 GT:AD:DP:GQ:PL 1/1:2,165:167:99:4730,460,0 12 77424061 rs61758459 G A 2260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=5.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.645;SOR=1.101 GT:AD:DP:GQ:PL 0/1:103,98:201:99:2289,0,2516 12 77438436 rs2242384 T C 4240.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4269,457,0 12 77449790 rs310791 A G 6376.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6405,620,0 12 78225374 rs10735309 A G 5130.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5159,492,0 12 78530979 rs1852464 G A 2098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.023;SOR=0.481 GT:AD:DP:GQ:PL 0/1:80,96:176:99:2127,0,1951 12 78540174 rs34144410 TA T 441.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.191;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.282;SOR=0.416 GT:AD:DP:GQ:PL 0/1:19,24:43:99:479,0,406 12 78570914 rs1020462 G C 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=0.891;SOR=0.405 GT:AD:DP:GQ:PL 0/1:65,42:107:99:969,0,1797 12 78582566 rs400289 A G 2361.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2390,242,0 12 78598891 rs9971904 G A 1813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.046;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-2.474;SOR=0.672 GT:AD:DP:GQ:PL 0/1:87,79:166:99:1842,0,2096 12 79611374 rs2037743 C T 2395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-2.013;SOR=0.635 GT:AD:DP:GQ:PL 0/1:123,113:236:99:2424,0,2858 12 79685913 rs2272500 C A 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=0.825;SOR=0.804 GT:AD:DP:GQ:PL 0/1:49,67:116:99:1656,0,1180 12 80014907 rs2307223 A T 2671.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2700,284,0 12 80672064 rs1376384 A G 2846.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.11;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2875,314,0 12 80712307 rs7963215 A C 2611.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=1.525 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2640,245,0 12 80712420 rs10778725 G A 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4315,432,0 12 80735771 rs10778727 T C 3465.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3494,333,0 12 80746234 rs147703967 G GAAT 3393.73 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=44.07;SOR=1.64 GT:AD:DP:GQ:PL 1/1:0,77:77:99:3431,231,0 12 80747242 rs7297767 A G 5641.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5670,561,0 12 80752660 rs2034528 A G 2133.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.42;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2162,186,0 12 80761430 rs1551118 G A 2915.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2944,294,0 12 80761465 rs2717482 G A 2965.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2994,302,0 12 80765800 rs1551122 A G 2110.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.98;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2139,192,0 12 80771813 rs2717477 G A 3301.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3330,345,0 12 81671207 . T TA 71.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0;DP=34;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=1.451;QD=2.76;ReadPosRankSum=-2.962;SOR=0.33 GT:AD:DP:GQ:PL 0/1:19,7:29:99:109,0,374 12 81769581 rs10862301 C T 1561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=2.612;SOR=0.695 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1590,0,1793 12 81833745 rs2272083 G T 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.801;SOR=0.618 GT:AD:DP:GQ:PL 0/1:45,49:94:99:1077,0,1000 12 82751062 rs3077481 TATC T 3255.73 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=44;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,74:74:99:3293,223,0 12 82783668 rs10778908 C T 1881.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1910,189,0 12 82792787 rs4296098 C A 3409.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3438,327,0 12 82872698 rs113362369 T A 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.671;SOR=0.909 GT:AD:DP:GQ:PL 0/1:43,56:99:99:1307,0,1027 12 85277561 rs17183577 T A 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=-0.982;SOR=0.684 GT:AD:DP:GQ:PL 0/1:74,53:127:99:1123,0,1871 12 85277608 rs17183612 C T 1151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.166;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0.432;SOR=1.005 GT:AD:DP:GQ:PL 0/1:80,50:130:99:1180,0,2461 12 88440676 rs9262 G C 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=1.72;SOR=0.734 GT:AD:DP:GQ:PL 0/1:53,77:130:99:1777,0,1161 12 88454594 rs11405846 T TA 1841.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;MQRankSum=0.243;QD=26.69;ReadPosRankSum=0.653;SOR=0.405 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1879,182,0 12 88483272 rs10717563 TA T 1939.73 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=26.21;SOR=1.842 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1977,222,0 12 88505078 rs2468255 T C 2047.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2076,213,0 12 88522823 rs71082425 A AC 2778.73 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=39.7;SOR=1.418 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2816,211,0 12 88525005 . TA T 93.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.7;ReadPosRankSum=-0.106;SOR=0.444 GT:AD:DP:GQ:PL 0/1:42,13:62:99:131,0,1077 12 88547277 rs2468230 T C 1739.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.46;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1768,156,0 12 89743223 rs704075 G A 4153.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.239 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4182,401,0 12 89745477 rs2279574 C A 11895.8 PASS AC=2;AF=1;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,410:410:99:11924,1225,0 12 89853408 rs4842658 G A 1303.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.3;QD=36.22;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1332,108,0 12 89866054 rs59139895 TAGAAAGAAGA T 2587.73 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=43.86;SOR=1.649 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2625,180,0 12 89916811 rs2230283 C T 7151.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7180,696,0 12 89917518 rs2230281 A G 10173.8 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,319:319:99:10202,956,0 12 90015579 rs35089871 C CA 1668.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.6;ReadPosRankSum=2.81;SOR=0.675 GT:AD:DP:GQ:PL 0/1:15,66:97:55:1622,0,55 12 91366649 rs17784152 G C 1324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.046;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-1.521;SOR=0.931 GT:AD:DP:GQ:PL 0/1:60,54:114:99:1353,0,1451 12 91372042 rs66600255 GA G 902.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.128;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=5.416;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=1.204;QD=13.08;ReadPosRankSum=0.424;SOR=1.424 GT:AD:DP:GQ:PL 0/1:21,48:98:99:940,0,402 12 91449990 rs2735333 C T 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.57;ReadPosRankSum=1.059;SOR=0.91 GT:AD:DP:GQ:PL 0/1:76,45:121:99:944,0,1883 12 92818482 rs12580153 C T 2692.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2721,267,0 12 92818786 rs1515565 A G 2568.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2597,263,0 12 93131203 rs2036553 A C 4602.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4631,482,0 12 93147907 rs9669519 A T 3831.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=1.304 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3860,366,0 12 93150102 rs924326 T C 2731.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.216 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2760,276,0 12 93155535 rs1504907 G A 1269.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1298,132,0 12 93196422 rs10745623 T G 4336.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4365,443,0 12 93202801 rs7970286 C T 2864.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2893,302,0 12 93206878 rs3925797 G A 1960.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.62;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1989,213,0 12 94645255 rs2230757 A G 2574.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2603,261,0 12 94769758 rs4761611 A G 686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.115;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.008;SOR=0.726 GT:AD:DP:GQ:PL 0/1:34,32:66:99:715,0,743 12 94972290 rs2270893 C T 5472.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5501,560,0 12 94975799 rs3747553 G A 5692.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5721,558,0 12 94976084 rs3747552 T C 6252.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6281,651,0 12 94976159 rs3747551 T C 6245.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.4;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6274,561,0 12 95044161 rs1274523 A C 5083.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5112,477,0 12 95479649 rs147286385 G A 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=1.544;SOR=0.927 GT:AD:DP:GQ:PL 0/1:62,42:104:99:1018,0,1630 12 95500727 rs7138545 C G 4396.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.12;QD=42.28;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,104:104:99:4425,315,0 12 95660182 rs17855933 A G 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.32;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=2.999;SOR=0.743 GT:AD:DP:GQ:PL 0/1:81,62:143:99:1546,0,1885 12 95693943 rs17344738 G A 660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.098;SOR=0.573 GT:AD:DP:GQ:PL 0/1:34,31:65:99:689,0,849 12 95694111 rs17855934 T G 1889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.642;SOR=0.669 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1918,0,1995 12 95694394 rs14121 G A 4889.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4918,481,0 12 95927762 rs3812813 T C 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.576;SOR=0.655 GT:AD:DP:GQ:PL 0/1:87,96:183:99:2432,0,2228 12 96131895 rs17288108 A G 1595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.362;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.069;SOR=0.688 GT:AD:DP:GQ:PL 0/1:62,68:130:99:1624,0,1394 12 96184068 . A C 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0;DP=173;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.34;ReadPosRankSum=-0.035;SOR=0.633 GT:AD:DP:GQ:PL 0/1:68,92:160:99:2322,0,1595 12 96184102 rs11108265 G A 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=1.144;SOR=0.597 GT:AD:DP:GQ:PL 0/1:77,58:135:99:1218,0,1937 12 96260947 rs7960706 A G 634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-0.04;SOR=0.922 GT:AD:DP:GQ:PL 0/1:34,31:65:99:663,0,732 12 96337183 rs7955450 A G 2136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.029;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=2.136;SOR=0.892 GT:AD:DP:GQ:PL 0/1:84,83:167:99:2165,0,2136 12 96361514 rs56676973 G GT 345.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.288;SOR=0.425 GT:AD:DP:GQ:PL 0/1:17,20:47:99:383,0,314 12 96374563 rs6538694 T C 3642.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.53;SOR=1.31 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,80:80:99:1|1:96374554_G_A:3671,253,0 12 96374614 rs7297245 C T 1716.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1745,173,0 12 96380975 rs11108364 A G 966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.434;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.357;SOR=0.622 GT:AD:DP:GQ:PL 0/1:57,41:98:99:995,0,1279 12 96387621 rs2302629 A G 524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.838;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.625;SOR=0.857 GT:AD:DP:GQ:PL 0/1:25,18:43:99:553,0,702 12 96408781 rs11108375 C T 697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-0.213;SOR=0.648 GT:AD:DP:GQ:PL 0/1:33,32:65:99:726,0,909 12 96653501 rs4762144 C T 4881.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.278 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4910,494,0 12 96676330 rs35751611 C A 446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.98;ReadPosRankSum=1.607;SOR=0.765 GT:AD:DP:GQ:PL 0/1:33,23:56:99:475,0,853 12 96704958 rs11285567 TA T 1009.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.05;ReadPosRankSum=0.823;SOR=0.371 GT:AD:DP:GQ:PL 0/1:22,31:56:99:1047,0,459 12 96927972 rs2160501 A G 347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.231;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=7.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.69;ReadPosRankSum=1.338;SOR=2.2 GT:AD:DP:GQ:PL 0/1:39,13:52:99:376,0,1018 12 96927986 rs2160502 A T 175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.417;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=3.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.91;ReadPosRankSum=0.451;SOR=1.539 GT:AD:DP:GQ:PL 0/1:32,13:45:99:204,0,892 12 96928024 rs76767300 G A 229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.681;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=6.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.56;ReadPosRankSum=-0.604;SOR=2.267 GT:AD:DP:GQ:PL 0/1:25,10:35:99:258,0,710 12 96974472 rs17025569 G A 1128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.21;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.13;ReadPosRankSum=0.18;SOR=0.44 GT:AD:DP:GQ:PL 0/1:19,51:70:99:1157,0,383 12 97020673 rs10507074 T C 721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.795;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=-1.205;SOR=0.811 GT:AD:DP:GQ:PL 0/1:52,34:86:99:750,0,1229 12 97023937 rs9919717 A C 1113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.307;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.057;QD=14.85;ReadPosRankSum=0.396;SOR=0.668 GT:AD:DP:GQ:PL 0/1:26,49:75:99:1142,0,621 12 97023991 rs1362949 C T 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=1.199;QD=14.01;ReadPosRankSum=-0.114;SOR=0.872 GT:AD:DP:GQ:PL 0/1:23,34:57:99:827,0,545 12 97085107 rs4762319 A C 2186.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.875;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=4.472;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.24;ReadPosRankSum=1.901;SOR=1.291 GT:AD:DP:GQ:PL 1/1:1,69:70:99:2215,199,0 12 97098549 rs11108643 T C 702.77 PASS AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,25:25:75:731,75,0 12 97102578 rs7968231 G A 2728.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2757,278,0 12 97136239 rs1990828 G A 3094.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3123,325,0 12 97254620 rs1420653 G A 2890.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.07;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2919,307,0 12 97303682 rs34499067 TA T 2297.31 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.307;QD=18.99;ReadPosRankSum=0.404;SOR=0.614 GT:AD:DP:GQ:PL 0/1:9,112:127:1:2323,0,1 12 99007356 rs1048908 T C 522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.599;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.86;ReadPosRankSum=-0.028;SOR=0.437 GT:AD:DP:GQ:PL 0/1:12,19:31:99:551,0,264 12 99007623 rs1048906 C T 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=5.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.62;ReadPosRankSum=-1.538;SOR=0.676 GT:AD:DP:GQ:PL 0/1:84,46:130:99:1019,0,2164 12 99166805 rs2287574 G T 1292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=-0.902;SOR=0.504 GT:AD:DP:GQ:PL 0/1:83,60:143:99:1321,0,2156 12 99640428 rs3751323 T C 2280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.01;ReadPosRankSum=-0.445;SOR=0.634 GT:AD:DP:GQ:PL 0/1:64,88:152:99:2309,0,1598 12 99640557 rs1552759 T C 5903.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5932,632,0 12 100041939 rs34319076 AT A 2436.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.144;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=-0.042;SOR=0.698 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,63:169:99:0|1:100041939_AT_A:2474,0,5618 12 100041942 rs79915291 T A 2445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.389;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=-1.024;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,70:177:99:0|1:100041939_AT_A:2474,0,5618 12 100042040 rs11109968 C G 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.351;SOR=0.665 GT:AD:DP:GQ:PL 0/1:150,129:279:99:2908,0,3691 12 100042163 rs11109969 A G 3797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.513;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=0.43;SOR=0.676 GT:AD:DP:GQ:PL 0/1:129,152:281:99:3826,0,3113 12 100708367 rs33968174 C T 997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=1.834;SOR=1.073 GT:AD:DP:GQ:PL 0/1:47,42:89:99:1026,0,1122 12 101683929 rs703715 C T 2495.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.395 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2524,243,0 12 101723239 rs35512001 T C 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.435;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-1.527;SOR=0.767 GT:AD:DP:GQ:PL 0/1:52,41:93:99:1218,0,1252 12 101750814 rs10082778 T A 1620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.652;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=4.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.178;SOR=0.908 GT:AD:DP:GQ:PL 0/1:76,69:145:99:1649,0,1850 12 102036305 rs2293468 C T 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.77;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.967;SOR=0.787 GT:AD:DP:GQ:PL 0/1:91,70:161:99:1683,0,2431 12 102045163 rs3817552 C G 2234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=1.251;SOR=0.582 GT:AD:DP:GQ:PL 0/1:100,92:192:99:2263,0,2453 12 102064118 rs7139095 T C 4179.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4208,431,0 12 102079418 rs2764 G A 4187.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4216,426,0 12 102108301 rs2066920 T C 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.77;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.939;SOR=0.653 GT:AD:DP:GQ:PL 0/1:57,46:103:99:1084,0,1362 12 102108345 rs3205421 T C 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.374;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.571;SOR=0.573 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1444,0,1319 12 102117589 rs11082 C T 1904.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1933,180,0 12 102131090 rs11306325 TA T 472.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=1.775;SOR=0.432 GT:AD:DP:GQ:PL 0/1:22,25:62:99:510,0,343 12 102154900 rs759935 A G 1579.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.747 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1608,156,0 12 102158763 rs10778148 T C 4075.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4104,381,0 12 102224436 rs4764655 C T 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.605;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=0.28;QD=13.9;ReadPosRankSum=0.342;SOR=0.772 GT:AD:DP:GQ:PL 0/1:26,38:64:99:918,0,722 12 102295218 rs7295569 T C 5708.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.07;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,154:154:99:1|1:102295218_T_C:5737,462,0 12 102295219 rs11111078 C T 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.461;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=3.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=1.732;SOR=1.05 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,74:153:99:0|1:102295218_T_C:1874,0,1956 12 102494849 rs17438178 T C 462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.659;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=1.365;SOR=0.715 GT:AD:DP:GQ:PL 0/1:17,17:34:99:491,0,381 12 103237468 rs772897 G C 4355.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4384,414,0 12 103246700 rs1042503 C T 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.62;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=4.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.815;SOR=0.403 GT:AD:DP:GQ:PL 0/1:67,61:128:99:1411,0,1782 12 103248924 rs1126758 C T 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=-1.469;SOR=0.593 GT:AD:DP:GQ:PL 0/1:66,46:112:99:982,0,1692 12 103306550 rs17842947 A G 749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.941;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=0.106;SOR=0.968 GT:AD:DP:GQ:PL 0/1:42,34:76:99:778,0,861 12 103352171 rs369257660 CGCA C 159.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.514;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=2.854;QD=0.64;ReadPosRankSum=-0.556;SOR=0.947 GT:AD:DP:GQ:PL 0/1:226,22:254:99:197,0,8661 12 103872172 rs10778257 T G 1557.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.82;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1586,168,0 12 103872221 rs141389753 A G 405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.299;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-1.219;SOR=0.976 GT:AD:DP:GQ:PL 0/1:19,17:36:99:434,0,459 12 104025446 rs147053330 G A 1628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.54;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.65;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=1.041;SOR=0.766 GT:AD:DP:GQ:PL 0/1:61,68:129:99:1657,0,1477 12 104048454 rs1609860 C A 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.94;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=1.187;SOR=0.635 GT:AD:DP:GQ:PL 0/1:77,58:135:99:1487,0,1842 12 104067812 rs11614418 C T 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.186;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.242;SOR=0.621 GT:AD:DP:GQ:PL 0/1:125,120:245:99:2715,0,2878 12 104086631 rs703651 C T 1245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.103;SOR=0.402 GT:AD:DP:GQ:PL 0/1:45,53:98:99:1274,0,1055 12 104139034 rs7306642 C A 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-2.306;SOR=0.662 GT:AD:DP:GQ:PL 0/1:73,80:153:99:1716,0,1730 12 104149251 rs7296626 C T 5768.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5797,565,0 12 104151931 rs12425537 T C 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.243;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.019;SOR=0.621 GT:AD:DP:GQ:PL 0/1:119,94:213:99:2250,0,2833 12 104155075 rs55724382 T C 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.978;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.36;ReadPosRankSum=-0.881;SOR=0.4 GT:AD:DP:GQ:PL 0/1:33,73:106:99:1868,0,638 12 104171742 rs17034524 C T 6582.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6611,653,0 12 104186995 rs61748068 G A 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=0.265;SOR=0.468 GT:AD:DP:GQ:PL 0/1:37,56:93:99:1298,0,794 12 104327979 rs6615 C T 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-1.529;SOR=0.46 GT:AD:DP:GQ:PL 0/1:67,74:141:99:1734,0,1606 12 104337667 rs1882019 G A 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.27;SOR=0.929 GT:AD:DP:GQ:PL 0/1:49,65:114:99:1562,0,1110 12 104341103 rs7645 C T 712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=1.622;SOR=0.859 GT:AD:DP:GQ:PL 0/1:32,35:67:99:741,0,771 12 104341187 rs5800607 TGAA T 1649.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.251;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.34;QD=20.12;ReadPosRankSum=-1.19;SOR=0.62 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1687,0,1402 12 104341398 rs1165695 T A 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.081;SOR=0.596 GT:AD:DP:GQ:PL 0/1:37,37:74:99:823,0,924 12 104345412 rs3830654 C CA 623.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.59;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.561;SOR=0.914 GT:AD:DP:GQ:PL 0/1:22,29:51:99:661,0,418 12 104370850 rs3829300 A G 2107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.856;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=0;QD=13.96;ReadPosRankSum=0.829;SOR=0.828 GT:AD:DP:GQ:PL 0/1:68,83:151:99:2136,0,1526 12 104373600 rs3751209 G A 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.273;SOR=0.773 GT:AD:DP:GQ:PL 0/1:76,58:134:99:1306,0,1988 12 104373728 rs151041931 G GA 1433.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.5;MQ=57.74;MQRankSum=-10.752;QD=5.21;ReadPosRankSum=1.396;SOR=0.736 GT:AD:DP:GQ:PL 0/1:198,77:275:99:1471,0,4579 12 104379506 . A ATTGAGAGCGTGGAGTTAAGAG 100.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.213;ClippingRankSum=0;DP=165;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.5;MQ=58.94;MQRankSum=-10.025;QD=0.62;ReadPosRankSum=-4.42;SOR=1.326 GT:AD:DP:GQ:PL 0/1:149,14:163:99:138,0,10253 12 104380734 rs2888805 G A 1491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=1.32;QD=9.81;ReadPosRankSum=2.04;SOR=0.805 GT:AD:DP:GQ:PL 0/1:82,70:152:99:1520,0,2046 12 104393304 rs3215372 AC A 852.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.035;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.034;QD=14.7;ReadPosRankSum=-0.841;SOR=0.836 GT:AD:DP:GQ:PL 0/1:29,29:58:99:890,0,861 12 104413436 rs11553765 C T 697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.085;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=0.088;SOR=0.542 GT:AD:DP:GQ:PL 0/1:46,35:81:99:726,0,1020 12 104476264 rs2253274 T C 703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.036;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=1.509;SOR=0.293 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,28:51:99:1|0:104476255_G_C:732,0,826 12 104645363 rs7960443 G A 1361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=4.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=1.595;SOR=0.542 GT:AD:DP:GQ:PL 0/1:81,62:143:99:1390,0,1924 12 104645405 rs7975161 T C 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-1.897;SOR=0.6 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1583,0,1924 12 104698582 rs11111987 A G 2555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.664;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.196;SOR=0.855 GT:AD:DP:GQ:PL 0/1:92,98:190:99:2584,0,2245 12 105260365 rs57519962 TA T 500.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.152;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.31;SOR=0.873 GT:AD:DP:GQ:PL 0/1:19,28:60:99:538,0,311 12 105433523 rs4964317 T A 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=0.667;SOR=0.705 GT:AD:DP:GQ:PL 0/1:69,51:120:99:1072,0,1636 12 105434467 rs11112330 C T 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.012;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.42;ReadPosRankSum=0.377;SOR=0.858 GT:AD:DP:GQ:PL 0/1:56,31:87:99:761,0,1407 12 105446719 rs56118650 G T 1320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=2.417;SOR=0.914 GT:AD:DP:GQ:PL 0/1:66,58:124:99:1349,0,1626 12 105464485 rs74449999 G A 2093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.385;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=1.237;SOR=0.447 GT:AD:DP:GQ:PL 0/1:85,87:172:99:2122,0,2064 12 105538665 rs139265089 G GT 671.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.091;QD=8.5;ReadPosRankSum=0.885;SOR=0.95 GT:AD:DP:GQ:PL 0/1:42,37:79:99:709,0,851 12 105540322 rs199922129 A AT 246.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.926;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.67;ReadPosRankSum=-1.161;SOR=0.818 GT:AD:DP:GQ:PGT:PID:PL 0/1:22,15:37:99:0|1:105540322_A_AT:284,0,449 12 105546172 rs1663564 G A 1805.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1834,195,0 12 105568122 rs935241 G A 5567.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5596,592,0 12 105568176 rs935240 G A 4278.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.088 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4307,439,0 12 105568246 rs147612468 A G 1153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.943;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.387;SOR=0.597 GT:AD:DP:GQ:PL 0/1:44,44:88:99:1182,0,1133 12 105582245 rs1196852 A G 2722.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=2.01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2751,249,0 12 106460938 rs3741883 G C 2287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=1.807;SOR=0.658 GT:AD:DP:GQ:PL 0/1:101,97:198:99:2316,0,2727 12 106532342 rs3741887 C T 3366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.118;SOR=0.621 GT:AD:DP:GQ:PL 0/1:158,150:308:99:3395,0,3816 12 106633569 rs3088113 C T 2642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.152;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=2.785;SOR=0.861 GT:AD:DP:GQ:PL 0/1:153,113:266:99:2671,0,3931 12 106641489 rs368519473 GGGC G 2647.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.446;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.237;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.716;QD=19.33;ReadPosRankSum=1.908;SOR=0.399 GT:AD:DP:GQ:PL 0/1:67,70:137:99:2685,0,2600 12 106704974 rs4964460 G A 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.643;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.184;SOR=0.905 GT:AD:DP:GQ:PL 0/1:96,83:179:99:1888,0,2603 12 106708278 rs2253838 T G 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.193;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-0.798;QD=8.93;ReadPosRankSum=0.561;SOR=0.732 GT:AD:DP:GQ:PL 0/1:66,44:110:99:1011,0,1548 12 106820957 rs202125845 CT C 460.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.691;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.258;SOR=0.374 GT:AD:DP:GQ:PL 0/1:16,25:47:99:498,0,229 12 106838340 rs10861607 T C 1800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-2.107;SOR=0.544 GT:AD:DP:GQ:PL 0/1:67,78:145:99:1829,0,1556 12 106903321 rs13561 T C 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.48;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.972;SOR=1.083 GT:AD:DP:GQ:PL 0/1:54,39:93:99:935,0,1388 12 107002558 rs55993073 CT C 145.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.638;QD=1.97;ReadPosRankSum=0.296;SOR=0.483 GT:AD:DP:GQ:PL 0/1:57,17:79:99:183,0,1280 12 107090201 rs10778502 T C 2279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.71;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.174;SOR=0.654 GT:AD:DP:GQ:PL 0/1:115,106:221:99:2308,0,2675 12 107237614 . G GT 103.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.676;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=3.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.67;ReadPosRankSum=0.973;SOR=1.23 GT:AD:DP:GQ:PL 0/1:49,13:69:99:141,0,1081 12 107364873 rs10778520 C T 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.034;SOR=0.618 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1136,0,1711 12 107395106 rs8192440 A G 967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.612;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=1.003;SOR=0.908 GT:AD:DP:GQ:PL 0/1:66,43:109:99:996,0,1577 12 107712880 rs10082935 C T 7588.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7617,769,0 12 107713511 rs961498 G C 4261.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,143:145:99:4290,428,0 12 107713696 rs111260184 G A 2851.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2880,283,0 12 108035903 rs9919712 T C 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=-1.439;SOR=0.605 GT:AD:DP:GQ:PL 0/1:86,64:150:99:1333,0,2176 12 108686008 rs1057401 C G 7754.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7783,738,0 12 108912399 rs77241670 A C 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.52;ReadPosRankSum=-0.64;SOR=0.653 GT:AD:DP:GQ:PL 0/1:72,107:179:99:2807,0,1731 12 108918146 rs2303633 C T 3783.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3812,360,0 12 108919390 rs7963063 T C 3053.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.56;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3082,273,0 12 108923950 rs1549096 A G 6213.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.74;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6242,670,0 12 108954823 rs1063936 C T 6031.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6060,600,0 12 108956417 rs10778647 T G 3858.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=45.94;SOR=1.347 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,84:84:99:1|1:108956417_T_G:3887,262,0 12 108956418 rs10778648 T G 3858.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=45.4;SOR=1.375 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,85:85:99:1|1:108956417_T_G:3887,262,0 12 108956433 rs2287555 C T 4297.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=41.73;SOR=1.234 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,103:103:99:1|1:108956417_T_G:4326,310,0 12 108956526 rs60547936 A AG 3622.73 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=33.24;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3660,328,0 12 108985785 rs73191224 C T 3553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.914;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=2.059;SOR=0.744 GT:AD:DP:GQ:PL 0/1:121,132:253:99:3582,0,3063 12 108985945 rs7975237 A G 3457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.86;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.05;SOR=0.648 GT:AD:DP:GQ:PL 0/1:155,139:294:99:3486,0,3525 12 109017898 rs2228315 C T 2122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-2.368;SOR=0.464 GT:AD:DP:GQ:PL 0/1:82,81:163:99:2151,0,2216 12 109182049 rs3741778 T C 3462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.119;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=2.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.159;SOR=0.859 GT:AD:DP:GQ:PL 0/1:172,154:326:99:3491,0,3946 12 109198910 rs149411384 C T 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-0.875;SOR=0.754 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1515,0,1690 12 109511256 rs7967322 T C 1170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.837;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.74;ReadPosRankSum=-0.723;SOR=0.764 GT:AD:DP:GQ:PL 0/1:80,54:134:99:1199,0,1790 12 109577735 rs2878960 C T 8389.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8418,807,0 12 109617865 rs11065772 T C 5928.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5957,609,0 12 109625976 . CTCCTTCCT C,CTCCT 1358.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=6.039;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;MQRankSum=0.354;QD=35.76;ReadPosRankSum=1.081;SOR=3.797 GT:AD:DP:GQ:PL 1/2:2,18,18:38:99:1396,676,888,646,0,679 12 109629457 rs7135947 C T 5239.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5268,527,0 12 109637188 rs7299171 G C 2828.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2857,276,0 12 109670468 rs3742027 T C 2245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.291;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-1.188;SOR=0.615 GT:AD:DP:GQ:PL 0/1:106,101:207:99:2274,0,2650 12 109675029 rs2241220 T C 2254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.502;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.1;SOR=0.849 GT:AD:DP:GQ:PL 0/1:105,90:195:99:2283,0,2433 12 109693982 rs3742023 C T 1162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=0.155;SOR=0.638 GT:AD:DP:GQ:PL 0/1:74,57:131:99:1191,0,1704 12 109696838 rs2075260 G A 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=0.377;SOR=0.725 GT:AD:DP:GQ:PL 0/1:89,80:169:99:1827,0,2081 12 109704177 rs2075262 G A 2357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-2.064;SOR=0.763 GT:AD:DP:GQ:PL 0/1:108,101:209:99:2386,0,2711 12 109717697 rs10774641 A G 3023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=3.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.551;SOR=0.498 GT:AD:DP:GQ:PL 0/1:115,131:246:99:3052,0,2713 12 109725663 rs75148933 G A 3170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.283;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=0.131;SOR=0.905 GT:AD:DP:GQ:PL 0/1:97,127:224:99:3199,0,2162 12 109872909 rs34725387 C T 2060.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2089,216,0 12 109883374 rs3825393 T C 1185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=1.495;SOR=0.749 GT:AD:DP:GQ:PL 0/1:66,51:117:99:1214,0,1652 12 110226379 rs3742037 G A 3063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.816;SOR=0.621 GT:AD:DP:GQ:PL 0/1:120,132:252:99:3092,0,2840 12 110240838 rs3825394 T G 7505.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.181;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.76;ReadPosRankSum=1.776;SOR=0.236 GT:AD:DP:GQ:PL 1/1:1,260:261:99:7534,772,0 12 110418743 rs117137680 C T 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-1.185;SOR=0.722 GT:AD:DP:GQ:PL 0/1:30,36:66:99:823,0,727 12 110618235 rs16940805 A G 706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.098;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=0.355;SOR=0.573 GT:AD:DP:GQ:PL 0/1:42,31:73:99:735,0,1025 12 110780107 rs56243033 G A 2898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.381;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.635;SOR=0.853 GT:AD:DP:GQ:PL 0/1:146,121:267:99:2927,0,3418 12 110819759 rs35699984 GA G 1004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.247;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=6.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=26.44;ReadPosRankSum=3.33;SOR=1.327 GT:AD:DP:GQ:PL 0/1:16,22:50:99:1033,0,406 12 110819761 rs78217750 A G 331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=5.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.51;ReadPosRankSum=2.094;SOR=1.508 GT:AD:DP:GQ:PL 0/1:29,22:51:99:360,0,642 12 110819762 . A G 32.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.66;ReadPosRankSum=1.465;SOR=0.521 GT:AD:DP:GQ:PL 0/1:39,11:50:61:61,0,988 12 110874501 rs200632933 AT A 211.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.74;MQRankSum=0;QD=8.47;ReadPosRankSum=1.363;SOR=0.631 GT:AD:DP:GQ:PL 0/1:19,6:26:99:249,0,464 12 110874502 rs28615662 T A 345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.926;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=-1.394;QD=10.17;ReadPosRankSum=-0.466;SOR=0.929 GT:AD:DP:GQ:PL 0/1:17,17:34:99:374,0,366 12 110874504 rs201277439 T A 418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.74;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.7;MLEAC=1;MLEAF=0.5;MQ=60.77;MQRankSum=-0.792;QD=10.21;ReadPosRankSum=-1.935;SOR=0.572 GT:AD:DP:GQ:PL 0/1:24,17:41:99:447,0,536 12 110974890 rs10849900 T C 512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=-0.443;SOR=0.982 GT:AD:DP:GQ:PL 0/1:35,24:59:99:541,0,898 12 111020739 rs151075597 TCGC T 4465.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.029;QD=18.45;ReadPosRankSum=0.168;SOR=0.793 GT:AD:DP:GQ:PL 0/1:125,117:245:99:4503,0,4935 12 111317904 rs35762292 T C 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=1.695;SOR=0.603 GT:AD:DP:GQ:PL 0/1:55,62:117:99:1495,0,1285 12 111342558 rs34300256 G T 2552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.273;SOR=0.693 GT:AD:DP:GQ:PL 0/1:108,108:216:99:2581,0,2827 12 111351029 rs3833910 TC T 7154.73 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=32.67;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,219:219:99:7192,659,0 12 111353556 rs2301610 A G 1214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=5.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-0.016;SOR=0.619 GT:AD:DP:GQ:PL 0/1:59,58:117:99:1243,0,1319 12 111701552 . G T 1069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.923;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=2.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-0.828;SOR=0.961 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1098,0,1241 12 111747963 rs3742007 C T 3352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=2.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.64;SOR=0.563 GT:AD:DP:GQ:PL 0/1:127,142:269:99:3381,0,2974 12 111760251 rs3742006 G C 2577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.728;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.96;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.69;QD=9.8;ReadPosRankSum=0.776;SOR=0.778 GT:AD:DP:GQ:PL 0/1:154,109:263:99:2606,0,3920 12 111785586 rs3803167 T C 2892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.866;SOR=0.758 GT:AD:DP:GQ:PL 0/1:128,126:254:99:2921,0,3075 12 111786082 rs6490073 G C 7802.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7831,744,0 12 111800826 rs139032867 TGCCACCCCC T 2978.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.344;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.116;QD=16.83;ReadPosRankSum=-1.579;SOR=0.873 GT:AD:DP:GQ:PL 0/1:97,80:177:99:3016,0,9762 12 111884608 rs3184504 T C 3633.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3662,363,0 12 111885351 rs111340708 ATGGGG A 606.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=-0.863;SOR=0.418 GT:AD:DP:GQ:PL 0/1:24,17:41:99:644,0,1068 12 111894072 rs2073950 C T 1669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.744;SOR=1.022 GT:AD:DP:GQ:PL 0/1:76,68:144:99:1698,0,1927 12 111992031 . T TA 73.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=2.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.32;ReadPosRankSum=0.045;SOR=0.405 GT:AD:DP:GQ:PL 0/1:44,12:63:99:111,0,896 12 112036753 rs10560189 GGCT G 7500.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.64;MQRankSum=0.532;QD=30;ReadPosRankSum=-1.128;SOR=0.481 GT:AD:DP:GQ:PL 1/1:4,246:267:99:7538,614,0 12 112036797 rs4098854 C T 9773.84 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=0.962;QD=33.47;ReadPosRankSum=-0.376;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 0/1:20,272:292:18:1|0:112036796_GC_G:9802,0,18 12 112036929 rs695872 G A 9495.77 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9524,917,0 12 112037000 rs695871 G C 9860.77 PASS AC=2;AF=1;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,335:335:99:9889,1003,0 12 113348870 rs1131454 G A 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.288;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=-0.273;SOR=0.929 GT:AD:DP:GQ:PL 0/1:64,80:144:99:1983,0,1505 12 113357193 rs10774671 G A 2729.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.691 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2758,264,0 12 113357209 rs1131476 G A 3247.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.483 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3276,327,0 12 113357237 rs1051042 G C 3906.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3935,387,0 12 113357442 rs2660 G A 1356.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.3;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1385,126,0 12 113376320 rs3815178 C T 3371.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=1.568 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3400,339,0 12 113376331 rs1859331 C A 3702.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.407 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3731,366,0 12 113376388 rs1859330 G A 5304.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5333,528,0 12 113376452 rs1859329 C T 5310.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=30.7;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5339,519,0 12 113385918 rs7961861 C T 1972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-1.938;SOR=0.751 GT:AD:DP:GQ:PL 0/1:80,87:167:99:2001,0,1919 12 113386779 rs2285933 C G 2750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.165;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.035;SOR=0.826 GT:AD:DP:GQ:PL 0/1:111,105:216:99:2779,0,2732 12 113386950 rs2285932 T C 6049.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=30.71;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6078,590,0 12 113401199 rs45603631 G A 3065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.037;SOR=0.822 GT:AD:DP:GQ:PL 0/1:140,130:270:99:3094,0,3572 12 113403684 rs2240188 C T 2571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=4.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-0.471;SOR=0.869 GT:AD:DP:GQ:PL 0/1:137,113:250:99:2600,0,3555 12 113424893 rs2072138 C G 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.913;SOR=0.832 GT:AD:DP:GQ:PL 0/1:92,76:168:99:1741,0,2363 12 113425154 rs1293767 C G 6711.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6740,630,0 12 113435450 rs1293755 A T 5646.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.82;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5675,608,0 12 113440921 rs2072137 T C 3709.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3738,381,0 12 113444418 rs929291 T C 3042.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3071,290,0 12 113448288 rs15895 A G 4691.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4720,459,0 12 113515924 rs71445596 CA C 3553.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.058;QD=15.52;ReadPosRankSum=-0.316;SOR=0.715 GT:AD:DP:GQ:PL 0/1:120,109:229:99:3591,0,3998 12 113533124 rs2243396 C T 7560.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7589,721,0 12 113539822 rs1674101 A G 6063.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.261 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6092,600,0 12 113553481 rs1284879 C T 6178.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6207,623,0 12 113727960 rs142922312 C T 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.507;SOR=0.766 GT:AD:DP:GQ:PL 0/1:61,46:107:99:947,0,1524 12 113796566 rs7965471 A C 9011.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9040,886,0 12 113825679 rs12425042 C T 3360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=2.396;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.676;SOR=0.72 GT:AD:DP:GQ:PL 0/1:165,154:319:99:3389,0,3936 12 113826442 rs78927955 C G 2234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=5.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.391;SOR=1.044 GT:AD:DP:GQ:PL 0/1:95,93:188:99:2263,0,2394 12 113835144 . G A 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DP=214;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.318;SOR=0.741 GT:AD:DP:GQ:PL 0/1:124,88:212:99:2005,0,3031 12 114261053 rs11066773 G A 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=1.603;SOR=0.814 GT:AD:DP:GQ:PL 0/1:70,68:138:99:1483,0,1575 12 114362483 rs3782456 C T 1095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=-1.215;SOR=0.72 GT:AD:DP:GQ:PL 0/1:70,56:126:99:1124,0,1552 12 114377885 rs2290790 G C 2708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-1.558;SOR=0.619 GT:AD:DP:GQ:PL 0/1:116,124:240:99:2737,0,2769 12 114377899 rs7299217 G C 6880.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6909,713,0 12 114392971 rs55840068 C CGGT 4324.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.18;ReadPosRankSum=-0.632;SOR=0.958 GT:AD:DP:GQ:PL 0/1:85,110:195:99:4362,0,3424 12 114393028 rs1037747 C G 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.95;ReadPosRankSum=0.396;SOR=0.921 GT:AD:DP:GQ:PL 0/1:52,66:118:99:1910,0,1298 12 114395571 rs2290786 C T 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=2.01;SOR=0.814 GT:AD:DP:GQ:PL 0/1:144,125:269:99:2677,0,3423 12 116408538 rs2304460 A G 1906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.144;SOR=0.688 GT:AD:DP:GQ:PL 0/1:82,84:166:99:1935,0,1860 12 116429689 rs1865787 A G 3398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=1.599;SOR=0.62 GT:AD:DP:GQ:PL 0/1:120,140:260:99:3427,0,2844 12 116446445 rs3741768 C T 2571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=1.132;SOR=0.806 GT:AD:DP:GQ:PL 0/1:131,108:239:99:2600,0,3463 12 117160976 rs10507274 T C 2762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-2.455;SOR=0.76 GT:AD:DP:GQ:PL 0/1:89,116:205:99:2791,0,2052 12 117175608 rs73220422 C T 2869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.98;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.273;SOR=0.694 GT:AD:DP:GQ:PL 0/1:121,118:239:99:2898,0,3340 12 117187907 rs111256849 T C 4602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.964;ClippingRankSum=0;DB;DP=369;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.199;SOR=0.645 GT:AD:DP:GQ:PL 0/1:191,178:369:99:4631,0,4634 12 117187919 rs116754010 C T 4169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.778;SOR=0.694 GT:AD:DP:GQ:PL 0/1:187,179:366:99:4198,0,4816 12 117217141 rs4767452 T C 4578.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4607,459,0 12 117349014 rs11068230 C G 8473.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8502,836,0 12 117383320 rs4076700 G A 3218.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3247,329,0 12 117465857 rs4529958 T C 7696.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,269:269:99:7725,806,0 12 117465981 rs2291916 T C 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-1.445;SOR=0.928 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1687,0,2101 12 117669914 rs3741475 G A 1149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=4.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=1.306;SOR=0.41 GT:AD:DP:GQ:PL 0/1:75,53:128:99:1178,0,1938 12 117685138 rs2291908 T C 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.871;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=-1.038;SOR=1.055 GT:AD:DP:GQ:PL 0/1:42,54:96:99:1379,0,950 12 117685270 rs1047735 G A 1692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.399;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-1.405;SOR=0.869 GT:AD:DP:GQ:PL 0/1:79,73:152:99:1721,0,1860 12 117693817 rs11068428 G A 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.107;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=6.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-1.727;SOR=0.29 GT:AD:DP:GQ:PL 0/1:43,52:95:99:1183,0,1148 12 117701714 rs2293054 A G 4421.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4450,469,0 12 117718686 rs2293051 G C 1853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.773;SOR=0.454 GT:AD:DP:GQ:PL 0/1:69,77:146:99:1882,0,1707 12 117907449 rs12304889 T C 2093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=-1.099;SOR=0.467 GT:AD:DP:GQ:PL 0/1:73,86:159:99:2122,0,1818 12 117993064 rs7955803 C T 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.016;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=6.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=0.065;SOR=0.354 GT:AD:DP:GQ:PL 0/1:74,60:134:99:1325,0,1713 12 118020115 rs11068551 G A 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-1.135;SOR=0.657 GT:AD:DP:GQ:PL 0/1:53,54:107:99:1234,0,1248 12 118199286 rs617641 C G 4971.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=1.144 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5000,488,0 12 118464688 rs5745870 A G 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.088;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=10.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.202;SOR=1.269 GT:AD:DP:GQ:PL 0/1:59,49:108:99:1244,0,1402 12 118473054 rs9788041 T C 5011.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5040,509,0 12 118506186 rs67405503 A T 1768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-1.402;SOR=0.663 GT:AD:DP:GQ:PL 0/1:106,76:182:99:1797,0,2734 12 118509148 rs7308222 C T 1929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.23;ReadPosRankSum=1.092;SOR=0.61 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,51:112:99:0|1:118509138_A_G:1958,0,2929 12 118509157 rs7296643 T C 1933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.862;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.39;ReadPosRankSum=0.676;SOR=0.545 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,53:118:99:0|1:118509138_A_G:1962,0,2987 12 118673483 rs5801274 G GA 302.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.78;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=5.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.04;ReadPosRankSum=-0.491;SOR=0.234 GT:AD:DP:GQ:PL 0/1:26,17:49:99:340,0,496 12 118682751 rs428073 C T 1618.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1647,168,0 12 118821800 . C CT 529.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DP=82;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-0.139;SOR=0.456 GT:AD:DP:GQ:PL 0/1:33,29:79:99:567,0,695 12 119540203 rs73213730 G A 979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=1.51;SOR=0.585 GT:AD:DP:GQ:PL 0/1:35,38:73:99:1008,0,959 12 119568596 rs7297606 G A 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-0.605;SOR=0.864 GT:AD:DP:GQ:PL 0/1:124,113:237:99:2574,0,2931 12 119866533 rs1064319 A G 2467.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2496,249,0 12 120067561 rs2301653 T C 5176.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5205,528,0 12 120126074 rs60420725 A AAGG 3806.73 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.26;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3844,259,0 12 120156141 rs278102 G A 6467.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6496,689,0 12 120171995 rs278109 T C 5681.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5710,558,0 12 120172173 rs11064891 G A 2567.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=1.952 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2596,243,0 12 120190059 rs147146275 CAG C 179.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.3;ReadPosRankSum=-0.291;SOR=0.675 GT:AD:DP:GQ:PL 0/1:66,12:78:99:217,0,2263 12 120195354 rs34851548 TG T 3999.73 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.52;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4037,370,0 12 120575549 rs3864938 A C 4568.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4597,428,0 12 120750239 rs2261612 A G 3488.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=1.651 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3517,342,0 12 120995332 rs2292681 G A 4694.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4723,483,0 12 121017171 rs7174 A G 3566.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3595,339,0 12 121093629 rs74906883 CGTGCGT C 1950.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.838;MLEAC=1;MLEAF=0.5;MQ=61.48;MQRankSum=1.391;QD=14.03;ReadPosRankSum=1.602;SOR=0.504 GT:AD:DP:GQ:PL 0/1:74,65:152:99:1988,0,4758 12 121432117 rs56348580 G C 5253.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.321;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.182;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.53;ReadPosRankSum=0.116;SOR=0.526 GT:AD:DP:GQ:PL 1/1:3,195:200:99:5282,516,0 12 121437114 rs55834942 G A 2297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=4.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=1.735;SOR=0.441 GT:AD:DP:GQ:PL 0/1:85,97:182:99:2326,0,2111 12 121437221 rs1169304 T C 8688.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8717,857,0 12 121437382 rs1169305 A G 6558.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.969;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.28;ReadPosRankSum=0.839;SOR=0.846 GT:AD:DP:GQ:PL 1/1:2,222:224:99:6587,621,0 12 121442199 rs3751151 T A 2518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=1.032;SOR=0.765 GT:AD:DP:GQ:PL 0/1:127,109:236:99:2547,0,3200 12 121454257 rs2258227 T A 6078.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.291 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6107,599,0 12 121600253 rs208294 T C 3857.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3886,369,0 12 121605355 rs7958311 G A 4605.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4634,468,0 12 121615103 rs1718119 G A 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.435;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.202;SOR=0.943 GT:AD:DP:GQ:PL 0/1:97,80:177:99:1903,0,2302 12 121618278 rs112146943 CT C 158.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.643;ClippingRankSum=0;DB;DP=22;ExcessHet=3.0103;FS=9.26;MLEAC=1;MLEAF=0.5;MQ=60.49;MQRankSum=0.809;QD=9.92;ReadPosRankSum=-0.114;SOR=0.037 GT:AD:DP:GQ:PL 0/1:5,11:16:79:196,0,79 12 121622196 rs2230912 A G 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=2.573;SOR=0.754 GT:AD:DP:GQ:PL 0/1:84,92:176:99:2344,0,2107 12 121622520 rs1653624 A T 4700.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4729,477,0 12 121622563 rs1621388 G A 1322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.545;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=0.075;SOR=0.845 GT:AD:DP:GQ:PL 0/1:84,62:146:99:1351,0,2213 12 121678327 rs63023660 C CTT,CTTT 3803.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.114;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.14;MQRankSum=0;QD=42.74;ReadPosRankSum=0.136;SOR=0.324 GT:AD:DP:GQ:PL 1/2:1,20,68:127:99:3841,1786,1544,388,0,221 12 121701681 rs2230776 G A 1832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.164;SOR=0.61 GT:AD:DP:GQ:PL 0/1:90,82:172:99:1861,0,2262 12 121712077 rs3817190 T A 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.571;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.304;SOR=0.518 GT:AD:DP:GQ:PL 0/1:109,102:211:99:2500,0,2672 12 121712301 rs28360477 C T 1585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.742;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.025;SOR=0.533 GT:AD:DP:GQ:PL 0/1:59,66:125:99:1614,0,1629 12 121789927 rs1799525 C A 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.364;SOR=0.845 GT:AD:DP:GQ:PL 0/1:74,81:155:99:2206,0,1908 12 122064773 rs72003075 CCCGCCA C 8098.73 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=44.5;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,182:182:99:8136,549,0 12 122079189 rs3741595 C T 6454.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6483,648,0 12 122079441 rs3825175 T C 8170.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8199,788,0 12 122243905 rs1168666 C T 6860.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6889,685,0 12 122248582 rs895952 C G 12000.8 PASS AC=2;AF=1;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,363:363:99:12029,1088,0 12 122497001 rs28629903 T C 2929.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2958,297,0 12 122516897 rs147186759 G A 2100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.91;ReadPosRankSum=1.492;SOR=0.403 GT:AD:DP:GQ:PL 0/1:48,84:132:99:2129,0,1132 12 122617989 rs7978353 A G 8605.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.939 GT:AD:DP:GQ:PL 1/1:0,297:297:99:8634,889,0 12 122618131 rs36045144 A G 2425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.619;SOR=0.857 GT:AD:DP:GQ:PL 0/1:99,124:223:99:2454,0,2165 12 122622795 rs74580294 A G 1586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.173;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.309;SOR=0.679 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1615,0,1483 12 122623000 rs4758686 T C 7005.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7034,709,0 12 122658383 rs6489173 A G 3093.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=1.538 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3122,290,0 12 122674758 rs4758651 G A 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.575;SOR=0.527 GT:AD:DP:GQ:PGT:PID:PL 0/1:111,98:209:99:0|1:122674758_G_A:2185,0,4283 12 122674780 rs11060094 C A 2620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.332;SOR=0.877 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,115:216:99:1|0:122674758_G_A:2649,0,3795 12 122684732 rs118113211 C G 1774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=8.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-1.012;SOR=1.277 GT:AD:DP:GQ:PL 0/1:91,74:165:99:1803,0,2250 12 122685140 . A AGGGGGAGAAAGACAAGAAAGG 2021.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.638;ClippingRankSum=0;DP=175;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=61.59;MQRankSum=7.071;QD=15.55;ReadPosRankSum=0.687;SOR=0.611 GT:AD:DP:GQ:PL 0/1:79,51:130:99:2059,0,4410 12 122691738 rs4758675 C A 7515.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7544,712,0 12 122812503 rs1129167 G C 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=4.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-0.237;SOR=0.48 GT:AD:DP:GQ:PL 0/1:76,51:127:99:1188,0,2037 12 122991478 rs9988963 C G 1503.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1532,143,0 12 122993011 rs10773230 C T 2037.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.542 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2066,204,0 12 123057792 rs61751322 A G 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.175;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=2.352;SOR=0.661 GT:AD:DP:GQ:PL 0/1:53,52:105:99:1276,0,1315 12 123087442 rs7307735 A G 2470.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=1.15 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2499,231,0 12 123200247 rs56308926 G C 8607.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.872;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.86;MQRankSum=-1.031;QD=28.69;ReadPosRankSum=0.308;SOR=0.748 GT:AD:DP:GQ:PL 1/1:2,298:300:99:8636,806,0 12 123200334 rs116821988 T C 951.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.005;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=75.296;MLEAC=1;MLEAF=0.5;MQ=42;MQRankSum=-3.113;QD=5.53;ReadPosRankSum=-0.334;SOR=5.716 GT:AD:DP:GQ:PL 0/1:134,38:172:99:980,0,3557 12 123200527 rs118091133 T C 137.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.649;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=10.956;MLEAC=1;MLEAF=0.5;MQ=43.6;MQRankSum=-4.191;QD=0.72;ReadPosRankSum=-1.429;SOR=1.959 GT:AD:DP:GQ:PL 0/1:173,18:191:99:166,0,4554 12 123200693 rs17884481 A G 2155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.073;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=10.219;MLEAC=1;MLEAF=0.5;MQ=55.45;MQRankSum=0.292;QD=10.03;ReadPosRankSum=0.843;SOR=0.997 GT:AD:DP:GQ:PL 0/1:128,87:215:99:2184,0,3536 12 123200768 rs1798192 T G 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=6.238;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.062;QD=12.13;ReadPosRankSum=-0.136;SOR=0.826 GT:AD:DP:GQ:PL 0/1:121,109:230:99:2819,0,3161 12 123200937 rs1696352 T G 3555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.836;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.5;MQ=59.17;MQRankSum=-4.438;QD=13.37;ReadPosRankSum=0.811;SOR=0.703 GT:AD:DP:GQ:PL 0/1:136,130:266:99:3584,0,3337 12 123246766 . A AT 30.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.186;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.57;ReadPosRankSum=1.005;SOR=0.8 GT:AD:DP:GQ:PL 0/1:45,9:58:68:68,0,964 12 123333065 rs2135014 C T 4047.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4076,398,0 12 123340453 rs11418615 G GC 3536.73 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=35.37;SOR=2.078 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3574,294,0 12 123341289 rs897386 A C 4828.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.9;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,110:110:99:1|1:123341289_A_C:4857,334,0 12 123342628 rs34131980 CCTCTT C 3962.73 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=44.03;SOR=1.508 GT:AD:DP:GQ:PL 1/1:0,90:90:99:4000,271,0 12 123345347 rs7306948 G A 4357.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4386,408,0 12 123345736 rs10847910 C G 6454.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.32;SOR=1.012 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,149:149:99:1|1:123345736_C_G:6483,456,0 12 123345756 rs3215148 G GC 6437.73 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.92;SOR=0.864 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,150:150:99:1|1:123345736_C_G:6475,465,0 12 123460962 rs884956 T C 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.314;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.169;SOR=0.719 GT:AD:DP:GQ:PL 0/1:46,53:99:99:1264,0,1040 12 123466111 rs55742290 C T 1158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=0.077;SOR=0.534 GT:AD:DP:GQ:PL 0/1:66,53:119:99:1187,0,1655 12 123470586 rs12828755 C T 2560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.7;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.04;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.239;SOR=0.596 GT:AD:DP:GQ:PL 0/1:131,105:236:99:2589,0,3323 12 123471094 rs12811109 G A 4215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=0.623;SOR=0.598 GT:AD:DP:GQ:PL 0/1:199,170:369:99:4244,0,5203 12 123473254 rs1463877 T C 1729.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.249;SOR=1.034 GT:AD:DP:GQ:PL 0/1:94,73:167:99:1758,0,2384 12 123645803 rs1051431 G A 2320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.983;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=4.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.117;SOR=0.438 GT:AD:DP:GQ:PL 0/1:93,103:196:99:2349,0,2366 12 123664514 rs1727301 G A 289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.692;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=4.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.04;ReadPosRankSum=-2.112;SOR=1.275 GT:AD:DP:GQ:PL 0/1:34,14:48:99:318,0,888 12 123665695 rs1727306 A G 1085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.877;SOR=0.909 GT:AD:DP:GQ:PL 0/1:36,49:85:99:1114,0,770 12 123694724 rs2682434 C T 565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.98;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=1.691;SOR=0.741 GT:AD:DP:GQ:PL 0/1:30,25:55:99:594,0,813 12 123746357 rs4759416 C G 672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.779;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=5.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.445;SOR=1.429 GT:AD:DP:GQ:PL 0/1:40,25:65:99:701,0,1046 12 123794022 rs6488867 T C 2503.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2532,258,0 12 123799974 rs6488868 A G 856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.601;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.589;SOR=0.784 GT:AD:DP:GQ:PL 0/1:50,36:86:99:885,0,1195 12 123806219 rs1060105 C T 1347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.087;SOR=0.816 GT:AD:DP:GQ:PL 0/1:47,57:104:99:1376,0,1205 12 123810873 rs61388686 G A 929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.78;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.09;SOR=0.717 GT:AD:DP:GQ:PL 0/1:58,43:101:99:958,0,1565 12 123825559 rs12322888 C T 864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.11;SOR=0.693 GT:AD:DP:GQ:PL 0/1:37,41:78:99:893,0,872 12 124008073 rs2292500 A G 5134.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5163,510,0 12 124017850 rs28492040 G C 2521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.131;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=3.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.855;SOR=0.787 GT:AD:DP:GQ:PL 0/1:106,95:201:99:2550,0,2759 12 124069213 rs786446 T C 6425.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6454,612,0 12 124086736 rs141195308 T G 2004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=2.588;SOR=0.675 GT:AD:DP:GQ:PL 0/1:90,89:179:99:2033,0,2021 12 124090605 rs4047521 ACT A 8728.73 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=42.17;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,207:207:99:8766,623,0 12 124144572 rs3215246 CT C 122.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.443;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.22;ReadPosRankSum=0.336;SOR=1.071 GT:AD:DP:GQ:PL 0/1:82,19:111:99:160,0,2018 12 124209332 rs1139789 T C 5860.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.57;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,141:141:99:1|1:124209332_T_C:5889,424,0 12 124209352 rs11837144 C T 5240.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.79;SOR=1.417 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,117:117:99:1|1:124209332_T_C:5269,361,0 12 124210782 rs1399961 T C 2416.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2445,251,0 12 124229429 rs7135542 T C 3910.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3939,377,0 12 124242458 rs370511382 CT C 165.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.68;ReadPosRankSum=0.763;SOR=0.52 GT:AD:DP:GQ:PL 0/1:31,14:51:99:203,0,704 12 124246910 rs116918834 G A 2313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.127;SOR=0.749 GT:AD:DP:GQ:PL 0/1:112,104:216:99:2342,0,2862 12 124265687 rs11057353 T C 1613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.729;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.963;SOR=0.745 GT:AD:DP:GQ:PL 0/1:77,70:147:99:1642,0,1767 12 124267638 rs11057354 A G 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.22;ReadPosRankSum=-2.188;SOR=0.754 GT:AD:DP:GQ:PL 0/1:43,65:108:99:1672,0,1040 12 124267703 rs11057355 T C 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.558;SOR=0.863 GT:AD:DP:GQ:PL 0/1:85,93:178:99:2158,0,1829 12 124274474 rs10846559 A G 1811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.947;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-1.446;SOR=0.566 GT:AD:DP:GQ:PL 0/1:82,75:157:99:1840,0,2008 12 124325977 rs4930729 T G 2591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-1.004;SOR=0.622 GT:AD:DP:GQ:PL 0/1:106,120:226:99:2620,0,2351 12 124417889 rs4930721 C T 3047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.112;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.602;SOR=0.688 GT:AD:DP:GQ:PL 0/1:142,136:278:99:3076,0,3695 12 124427306 rs11057401 T A 1039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-2.328;SOR=0.807 GT:AD:DP:GQ:PL 0/1:36,45:81:99:1068,0,808 12 124472571 rs4765562 T C 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.599;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=3.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=1.93;SOR=1.005 GT:AD:DP:GQ:PL 0/1:104,69:173:99:1587,0,2396 12 124820013 rs1106317 A G 3092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.673;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.605;SOR=0.793 GT:AD:DP:GQ:PL 0/1:127,113:240:99:3121,0,2909 12 124821696 rs2229842 C T 3511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.304;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=1.01;SOR=0.929 GT:AD:DP:GQ:PL 0/1:151,148:299:99:3540,0,3509 12 124824721 rs143952466 C CGCCGCTGCT 11036.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.816;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;MQRankSum=0.202;QD=33.34;ReadPosRankSum=0.215;SOR=0.27 GT:AD:DP:GQ:PL 1/1:1,330:331:99:11074,997,0 12 124826598 rs2230942 T C 3592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.125;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-1.823;SOR=0.78 GT:AD:DP:GQ:PL 0/1:157,153:310:99:3621,0,3592 12 124829234 rs1263992 C T 5501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.03;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.24;ReadPosRankSum=0.929;SOR=0.763 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,149:286:99:0|1:124829234_C_T:5530,0,6366 12 124829255 rs1244085 A G 5903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.968;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.95;ReadPosRankSum=0.78;SOR=0.745 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,158:296:99:0|1:124829234_C_T:5932,0,6318 12 124832474 rs1244065 G A 3186.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.2;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3215,337,0 12 124856618 rs7961196 A G 4301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.165;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=0.458;SOR=0.788 GT:AD:DP:GQ:PL 0/1:143,161:304:99:4330,0,3483 12 124856660 rs3741513 T A 4152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.266;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.51;SOR=0.568 GT:AD:DP:GQ:PL 0/1:198,178:376:99:4181,0,4740 12 124856830 rs142292731 C T 4477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0;DB;DP=389;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.149;SOR=0.701 GT:AD:DP:GQ:PL 0/1:197,187:384:99:4506,0,5164 12 124857033 rs7978237 C T 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=7.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=3.181;SOR=1.21 GT:AD:DP:GQ:PL 0/1:103,97:200:99:1949,0,2323 12 124887058 rs35831183 G GGCT,GGCTGCT 2236.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.29;MQRankSum=0;QD=17.89;ReadPosRankSum=-0.244;SOR=0.787 GT:AD:DP:GQ:PL 1/2:16,59,50:125:99:2274,800,1774,1105,0,2266 12 125396488 rs1071727 T C 13053.8 PASS AC=2;AF=1;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.38;QD=33.13;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,394:394:99:13082,1180,0 12 125397061 rs17840844 G A 10033.8 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.677;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=7.711;MLEAC=2;MLEAF=1;MQ=37.69;MQRankSum=2.554;QD=28.75;ReadPosRankSum=1.84;SOR=0.149 GT:AD:DP:GQ:PL 1/1:9,340:349:99:10062,854,0 12 125397364 rs8963 A G 16583.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.133;ClippingRankSum=0;DB;DP=579;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.31;MQRankSum=5.213;QD=28.84;ReadPosRankSum=-0.336;SOR=0.359 GT:AD:DP:GQ:PL 1/1:16,559:575:99:16612,1189,0 12 125397750 rs7137123 A G 18918.8 PASS AC=2;AF=1;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.99;QD=33.9;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,558:558:99:18947,1673,0 12 125398039 rs1071862 G C 15587.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.815;ClippingRankSum=0;DB;DP=487;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;MQRankSum=2.663;QD=32.27;ReadPosRankSum=1.857;SOR=0.457 GT:AD:DP:GQ:PL 1/1:3,480:483:99:15616,1358,0 12 125434580 rs4447263 C T 7744.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7773,773,0 12 125434988 rs146274723 C T 4835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.577;ClippingRankSum=0;DB;DP=390;ExcessHet=3.0103;FS=7.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.453;SOR=0.894 GT:AD:DP:GQ:PL 0/1:197,193:390:99:4864,0,4536 12 125437019 rs4429156 T C 6703.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6732,704,0 12 125438414 rs12367953 A G 7997.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,260:260:99:8026,780,0 12 125438516 rs4516060 T C 14784.8 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.94;SOR=0.899 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,329:329:99:1|1:125438516_T_C:14813,1026,0 12 125438523 rs4258464 C T 14671.8 PASS AC=2;AF=1;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.54;SOR=0.922 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,337:337:99:1|1:125438516_T_C:14700,1014,0 12 125438549 rs4606565 A G 11948.8 PASS AC=2;AF=1;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,380:380:99:11977,1143,0 12 125478381 rs61379857 C CCTG 3156.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.599;QD=19.49;ReadPosRankSum=-1.803;SOR=0.796 GT:AD:DP:GQ:PL 0/1:76,86:167:99:3194,0,2779 12 125834395 rs3803155 T C 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.677;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.114;SOR=0.629 GT:AD:DP:GQ:PL 0/1:115,105:220:99:2621,0,2828 12 126068417 rs6489006 T C 5790.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.88;QD=29.25;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5819,594,0 12 126137060 rs61021440 C T 1931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.42;MQRankSum=-10.38;QD=7.92;ReadPosRankSum=-1.397;SOR=0.707 GT:AD:DP:GQ:PL 0/1:151,93:244:99:1960,0,3682 12 126138386 rs142810353 C T 2512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.624;SOR=0.641 GT:AD:DP:GQ:PL 0/1:114,104:218:99:2541,0,2938 12 128900005 rs1683723 G A 7726.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7755,767,0 12 129153986 rs4272850 G A 2402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=0.947;SOR=0.745 GT:AD:DP:GQ:PL 0/1:152,115:267:99:2431,0,3572 12 129181810 rs885546 A G 4627.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4656,470,0 12 129181834 rs902060 A G 5224.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5253,521,0 12 129189941 rs12424159 G A 8958.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8987,863,0 12 129190021 rs11059841 A G 9006.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,281:281:99:9035,842,0 12 129190474 rs3812792 G A 9777.77 PASS AC=2;AF=1;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,326:326:99:9806,977,0 12 129278864 rs1059312 A G 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.495;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.274;SOR=0.739 GT:AD:DP:GQ:PL 0/1:60,44:104:99:1076,0,1587 12 129293346 rs11059924 C T 1768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=1.546;SOR=0.522 GT:AD:DP:GQ:PL 0/1:68,75:143:99:1797,0,1594 12 129299385 rs10847697 G A 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=2.374;SOR=0.705 GT:AD:DP:GQ:PL 0/1:106,86:192:99:1943,0,2735 12 129299446 rs33990080 A G 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.642;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-1.937;SOR=0.766 GT:AD:DP:GQ:PL 0/1:108,78:186:99:1913,0,2704 12 129360498 rs482401 G A 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.182;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.826;QD=9.33;ReadPosRankSum=1.015;SOR=0.715 GT:AD:DP:GQ:PL 0/1:69,49:118:99:1129,0,1670 12 129559557 rs10773594 C T 4814.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.66;ReadPosRankSum=-0.93;SOR=1.053 GT:AD:DP:GQ:PL 1/1:2,166:168:99:4843,415,0 12 129566406 rs79031518 C T 3217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.162;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.011;SOR=0.65 GT:AD:DP:GQ:PL 0/1:132,131:263:99:3246,0,3220 12 130185048 rs151244831 A G 2657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.556;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=6.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.547;SOR=0.869 GT:AD:DP:GQ:PL 0/1:132,108:240:99:2686,0,3314 12 130830906 rs11060836 C T 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=2.41;SOR=0.656 GT:AD:DP:GQ:PL 0/1:36,51:87:99:1222,0,928 12 130839165 rs10848087 G A 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.191;SOR=0.753 GT:AD:DP:GQ:PL 0/1:81,100:181:99:2338,0,1820 12 130847389 rs2242363 A G 2760.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2789,296,0 12 130884347 rs756186 A G 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.149;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.108;SOR=0.807 GT:AD:DP:GQ:PL 0/1:77,75:152:99:1769,0,1733 12 130921471 rs2292663 T C 3593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.868;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=3.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-2.151;SOR=0.522 GT:AD:DP:GQ:PL 0/1:157,154:311:99:3622,0,3559 12 131276448 rs4759786 G T 2230.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2259,234,0 12 131306314 rs17564 C G 791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=2.277;SOR=0.33 GT:AD:DP:GQ:PL 0/1:49,33:82:99:820,0,1411 12 131359298 rs7958223 C A 639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.41;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=-1.387;SOR=0.627 GT:AD:DP:GQ:PL 0/1:37,29:66:99:668,0,993 12 131466562 rs4759534 T C 3880.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3909,393,0 12 131488858 rs12311722 T C 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=0.754;SOR=0.747 GT:AD:DP:GQ:PL 0/1:49,39:90:99:824,0,1175 12 131590404 rs4759544 G A 4394.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.35;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4423,464,0 12 131620578 rs884522 C T 5604.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=1.17 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,125:125:99:1|1:131620578_C_T:5633,382,0 12 131620588 rs868158 A G 5864.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.5;SOR=1.059 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,138:138:99:1|1:131620578_C_T:5893,415,0 12 131622735 rs7302341 T C 4412.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4441,464,0 12 132209932 rs138640311 ATG A 1656.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.08;ReadPosRankSum=0.117;SOR=0.446 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1694,0,1884 12 132237848 rs1982528 T C 5485.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5514,524,0 12 132271113 rs7136643 T C 6983.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7012,677,0 12 132313098 rs71072797 G GGCTGCCGCT 3589.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.62;MQRankSum=0;QD=40.33;ReadPosRankSum=-1.299;SOR=0.765 GT:AD:DP:GQ:PL 1/1:4,85:89:86:3627,86,0 12 132323294 rs4964884 T C 8003.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.354;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;MQRankSum=-0.091;QD=29;ReadPosRankSum=0.587;SOR=0.801 GT:AD:DP:GQ:PL 1/1:4,272:276:99:8032,675,0 12 132325239 rs6598163 G A 9225.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,313:313:99:9254,939,0 12 132396603 rs11616018 C T 3972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=-0.96;QD=11.42;ReadPosRankSum=0.162;SOR=0.616 GT:AD:DP:GQ:PL 0/1:180,168:348:99:4001,0,4248 12 132402020 rs4964918 T C 3944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.206;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=3.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.859;SOR=0.751 GT:AD:DP:GQ:PL 0/1:178,163:341:99:3973,0,3767 12 132403161 rs11609348 A G 11333.8 PASS AC=2;AF=1;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,379:379:99:11362,1135,0 12 132445896 . C T 216.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0;DP=106;ExcessHet=3.0103;FS=52.67;MLEAC=1;MLEAF=0.5;MQ=26.9;MQRankSum=-1.232;QD=2.04;ReadPosRankSum=-2.239;SOR=2.78 GT:AD:DP:GQ:PL 0/1:88,18:106:99:245,0,2464 12 132512545 rs191893795 A G 1263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=1.504;SOR=0.479 GT:AD:DP:GQ:PL 0/1:49,47:96:99:1292,0,1346 12 132537941 . G C 803.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.43;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=198.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.51;ReadPosRankSum=-4.161;SOR=6.664 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,27:107:99:0|1:132537941_G_C:832,0,3508 12 132537946 . A C 379.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.75;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=117.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.69;ReadPosRankSum=-2.026;SOR=5.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,17:103:99:0|1:132537946_A_C:408,0,3887 12 132537947 . G C 379.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=118.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.65;ReadPosRankSum=-1.996;SOR=5.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,17:104:99:0|1:132537946_A_C:408,0,3887 12 132537950 . G C 376.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.101;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=114.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.59;ReadPosRankSum=-2.015;SOR=5.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,17:105:99:0|1:132537946_A_C:405,0,4031 12 132537952 . A C 373.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.537;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=115.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.53;ReadPosRankSum=-2.067;SOR=5.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:89,17:106:99:0|1:132537946_A_C:402,0,4083 12 132537953 . G C 370.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=112.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.47;ReadPosRankSum=-2.029;SOR=5.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,17:107:99:0|1:132537946_A_C:399,0,4149 12 132537959 . A C 639.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.345;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=136.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.15;ReadPosRankSum=-4.072;SOR=6.089 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,20:104:99:0|1:132537941_G_C:668,0,3789 12 132537962 . A C 386.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.804;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=110.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.87;ReadPosRankSum=-3.786;SOR=5.667 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,16:100:99:0|1:132537946_A_C:415,0,4187 12 132537968 . G C 288.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DP=117;ExcessHet=3.0103;FS=91.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.86;ReadPosRankSum=-4.34;SOR=5.416 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,14:101:99:0|1:132537946_A_C:317,0,4397 12 132537969 . CAGCAG C 246.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.178;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=70.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.31;ReadPosRankSum=-3.922;SOR=5.13 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,12:107:99:0|1:132537946_A_C:284,0,4859 12 132537977 . A C 177.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=53.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.68;ReadPosRankSum=-3.914;SOR=4.797 GT:AD:DP:GQ:PGT:PID:PL 0/1:96,10:106:99:0|1:132537946_A_C:206,0,4781 12 132537980 . G C 30.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0;DP=125;ExcessHet=3.0103;FS=36.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.29;ReadPosRankSum=-3.409;SOR=4.161 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,7:107:59:0|1:132537946_A_C:59,0,5084 12 132539500 rs57520767 AT A 117.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.417;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.37;ReadPosRankSum=-0.086;SOR=0.675 GT:AD:DP:GQ:PL 0/1:69,17:94:99:155,0,1620 12 132547093 . ACAG A 2384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.785;ClippingRankSum=0;DP=377;ExcessHet=3.0103;FS=7.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=0.356;SOR=0.897 GT:AD:DP:GQ:PL 0/1:118,112:239:99:2413,0,3887 12 132561987 rs12311898 C T 2980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.98;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=3.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-0.81;SOR=0.541 GT:AD:DP:GQ:PL 0/1:174,135:309:99:3009,0,4040 12 132562126 rs73164912 G A 2962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.867;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.164;SOR=0.587 GT:AD:DP:GQ:PL 0/1:135,121:256:99:2991,0,3298 12 132624434 rs61729150 T C 2869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.096;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.294;SOR=0.807 GT:AD:DP:GQ:PL 0/1:148,118:266:99:2898,0,3490 12 132625361 rs58876661 C T 2250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=-0.505;SOR=0.785 GT:AD:DP:GQ:PL 0/1:81,87:168:99:2279,0,2126 12 132626425 rs60927391 G A 4278.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4307,422,0 12 132631944 . TGCTGGGGACTCCCAGAGGGCCTG T 2099.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.83;MQRankSum=3.094;QD=18.92;ReadPosRankSum=-1.266;SOR=0.657 GT:AD:DP:GQ:PL 0/1:55,56:111:99:2137,0,11229 12 132635521 rs7397057 T C 2468.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.36;SOR=1.288 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,74:74:99:1|1:132635521_T_C:2497,222,0 12 132682481 rs12308155 T G 6700.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.97;SOR=0.79 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,149:149:99:1|1:132682481_T_G:6729,452,0 12 132682484 rs12306514 A G 6700.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.67;SOR=0.775 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,150:150:99:1|1:132682481_T_G:6729,452,0 12 132685826 rs11246988 T C 807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=4.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=-0.519;SOR=1.445 GT:AD:DP:GQ:PL 0/1:22,30:52:99:836,0,598 12 132688115 rs11246991 C T 2449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=1.466;SOR=0.888 GT:AD:DP:GQ:PL 0/1:138,114:252:99:2478,0,3267 12 132688137 rs7486927 A G 3390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.24;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=1.326;SOR=0.731 GT:AD:DP:GQ:PL 0/1:133,156:289:99:3419,0,2933 12 133049928 . CTCCTGGAGAGGACGTGGGCAGCTCGTGAACCCGGGGTCCCTTCCTGGAGAGGACGTGGGCAGTTCGTGGACCCGGGTCCCTTCCTGGAGAGGACGTGGGCAGCTCGTGGACCCGGGGTCCCT C 908.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.643;ClippingRankSum=0;DP=279;ExcessHet=3.0103;FS=11.502;MLEAC=1;MLEAF=0.5;MQ=54.29;MQRankSum=1.443;QD=5.19;ReadPosRankSum=-1.445;SOR=0.263 GT:AD:DP:GQ:PL 0/1:54,121:175:99:946,0,1563 12 133049977 . G A 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0;DP=193;ExcessHet=3.0103;FS=7.311;MLEAC=1;MLEAF=0.5;MQ=53.51;MQRankSum=1.136;QD=4.42;ReadPosRankSum=-7.853;SOR=1.359 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,35:191:99:0|1:133049977_G_A:872,0,2987 12 133049981 rs185816077 A G 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.566;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=7.965;MLEAC=1;MLEAF=0.5;MQ=53.36;MQRankSum=0.721;QD=4.54;ReadPosRankSum=-7.338;SOR=1.441 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,30:186:99:0|1:133049977_G_A:872,0,2987 12 133049991 rs189079112 T C 147.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.432;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=9.978;MLEAC=1;MLEAF=0.5;MQ=53.01;MQRankSum=-0.576;QD=0.87;ReadPosRankSum=-5.082;SOR=1.945 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,14:170:99:0|1:133049977_G_A:176,0,3050 12 133049997 . G A 63.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.628;ClippingRankSum=0;DP=168;ExcessHet=3.0103;FS=7.23;MLEAC=1;MLEAF=0.5;MQ=53.14;MQRankSum=-0.238;QD=0.38;ReadPosRankSum=-4.587;SOR=1.945 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,10:166:92:0|1:133049977_G_A:92,0,3056 12 133067343 . A G 1699.77 PASS AC=2;AF=1;AN=2;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=1.355 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1728,180,0 12 133102332 rs201533476 G A 1455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.69;SOR=0.917 GT:AD:DP:GQ:PL 0/1:52,62:114:99:1484,0,1272 12 133158632 rs3751304 C T 4977.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5006,461,0 12 133159846 rs56171012 C T 3052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=2.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=1.696;SOR=0.853 GT:AD:DP:GQ:PL 0/1:108,130:238:99:3081,0,2590 12 133160082 . C T 1982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.944;SOR=0.68 GT:AD:DP:GQ:PL 0/1:74,94:168:99:2011,0,1587 12 133160238 rs7966712 G C 510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.311;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=-0.131;SOR=0.835 GT:AD:DP:GQ:PL 0/1:38,24:64:99:539,0,868 12 133181399 rs11146963 T C 3940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-1.468;SOR=0.737 GT:AD:DP:GQ:PL 0/1:205,174:379:99:3969,0,4910 12 133181425 rs11146964 A G 4402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DB;DP=392;ExcessHet=3.0103;FS=3.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.162;SOR=0.89 GT:AD:DP:GQ:PL 0/1:208,184:392:99:4431,0,5141 12 133182783 . CCAG C 93.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.055;ClippingRankSum=0;DP=249;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=3.358;QD=0.43;ReadPosRankSum=-1.275;SOR=0.539 GT:AD:DP:GQ:PL 0/1:201,18:219:99:131,0,8360 12 133182818 rs12819734 G A 2630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.604;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.051;SOR=0.978 GT:AD:DP:GQ:PL 0/1:96,111:207:99:2659,0,2237 12 133195579 rs200710959 CGCGGGGCGCGGGGT C 1838.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.267;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.625;MLEAC=2;MLEAF=1;MQ=61;MQRankSum=0.798;QD=29.66;ReadPosRankSum=1.034;SOR=0.233 GT:AD:DP:GQ:PL 1/1:3,59:62:99:1876,155,0 12 133196596 rs7964634 T C 3294.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.241 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3323,333,0 12 133197018 rs6560891 G A 4212.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4241,431,0 12 133202215 rs5745075 G A 4063.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4092,402,0 12 133208886 rs5745023 C T 2776.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.414 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2805,275,0 12 133208979 rs5745022 T C 3581.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3610,363,0 12 133219831 rs5744944 T C 4724.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.06 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4753,471,0 12 133233705 rs5744889 T C 4995.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5024,492,0 12 133236000 rs5744857 C T 4170.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4199,417,0 12 133237753 rs369732588 GA G 64.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=3.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.92;ReadPosRankSum=0.692;SOR=0.332 GT:AD:DP:GQ:PL 0/1:58,12:81:99:102,0,1320 12 133295353 rs12423651 C T 1797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.28;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-1.113;SOR=0.583 GT:AD:DP:GQ:PL 0/1:77,74:151:99:1826,0,2011 12 133304604 rs11147024 C T 2478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.035;SOR=0.752 GT:AD:DP:GQ:PL 0/1:94,108:202:99:2507,0,2250 12 133349893 rs3741484 A G 555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.629;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=0.401;SOR=1.25 GT:AD:DP:GQ:PL 0/1:39,20:59:99:584,0,1324 12 133358870 rs2306546 G A 1127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.071;SOR=0.56 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1156,0,1289 12 133363376 rs7976379 G T 2205.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.44;QD=29.81;SOR=1.457 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2234,222,0 12 133384864 rs3741486 G A 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=0.86;SOR=0.719 GT:AD:DP:GQ:PL 0/1:52,75:127:99:1869,0,1195 12 133389998 rs7134809 T C 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.659;SOR=1.005 GT:AD:DP:GQ:PL 0/1:32,30:62:99:697,0,756 12 133423695 rs2306537 A G 1631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.21;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=0.953;SOR=0.825 GT:AD:DP:GQ:PL 0/1:60,55:115:99:1660,0,1489 12 133433173 rs2062163 T C 4286.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4315,426,0 12 133435716 rs35011845 T G 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-1.115;SOR=0.488 GT:AD:DP:GQ:PL 0/1:77,69:146:99:1572,0,1970 12 133682655 rs710945 A G 4735.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.87;QD=31.57;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4764,449,0 12 133697130 rs2173970 C G 7442.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,166:166:99:1|1:133697130_C_G:7471,503,0 12 133697131 rs11608611 A G 7442.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,166:166:99:1|1:133697130_C_G:7471,503,0 12 133768553 rs61960670 A T 4361.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4390,456,0 12 133780851 rs62644541 G C 5285.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5314,480,0 12 133803551 rs36146434 G C 8999.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9028,928,0 12 133808129 rs147259575 C T 6859.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6888,684,0 12 133810703 rs141475940 G C 6655.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6684,633,0 13 20000630 rs2497218 T C 1967.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1996,198,0 13 20038584 rs7339103 A G 3377.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.84;QD=30.16;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3406,336,0 13 20041493 rs71092363 TA T 1256.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.558;QD=22.05;ReadPosRankSum=-0.518;SOR=0.792 GT:AD:DP:GQ:PL 1/1:11,46:89:8:1042,8,0 13 20048218 rs58776475 AAAATAAATAAATAAATAAATAAAT A 3966.73 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.79;QD=44.57;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,89:92:99:4004,275,0 13 20066994 rs78472618 T C 1306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.107;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=8.464;MLEAC=1;MLEAF=0.5;MQ=51.33;MQRankSum=-9.373;QD=5.4;ReadPosRankSum=-3.186;SOR=1.283 GT:AD:DP:GQ:PGT:PID:PL 0/1:196,46:242:99:0|1:20066994_T_C:1335,0,8245 13 20067011 rs76437836 A C 1525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=7.327;MLEAC=1;MLEAF=0.5;MQ=51.09;MQRankSum=-9.855;QD=5.59;ReadPosRankSum=-0.956;SOR=1.166 GT:AD:DP:GQ:PGT:PID:PL 0/1:215,58:273:99:0|1:20066994_T_C:1554,0,8548 13 20277413 rs75085951 T C 2379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=7.245;MLEAC=1;MLEAF=0.5;MQ=46.78;MQRankSum=-7.484;QD=6.72;ReadPosRankSum=-0.649;SOR=0.789 GT:AD:DP:GQ:PL 0/1:220,134:354:99:2408,0,4958 13 20325625 rs2340650 C G 3799.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.08;QD=29.01;SOR=1.42 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3828,390,0 13 20656138 rs11344087 CT C 765.52 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=0.611;QD=17.4;ReadPosRankSum=1.548;SOR=0.96 GT:AD:DP:GQ:PL 0/1:7,37:51:13:802,0,13 13 20657188 rs9509028 T G 3352.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=32.24;SOR=1.436 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3381,312,0 13 20716533 rs968566 G T 5372.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.684;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.02;ReadPosRankSum=-0.542;SOR=0.294 GT:AD:DP:GQ:PL 1/1:1,178:179:99:5401,524,0 13 21063524 rs14236 A G 2797.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.53;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2826,258,0 13 21205140 rs1329519 A T 594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-2.348;SOR=0.488 GT:AD:DP:GQ:PL 0/1:25,26:51:99:623,0,577 13 21205192 rs9509307 G A 651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.477;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=4.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=2.564;SOR=0.95 GT:AD:DP:GQ:PL 0/1:38,29:67:99:680,0,886 13 21358061 rs17318617 A G 3076.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3105,323,0 13 21562482 rs10658032 C CGGGGCG 3397.73 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.14;QD=43.56;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,78:78:99:3435,238,0 13 21562832 rs2770928 C T 7708.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7737,762,0 13 21562948 rs558614 G A 7614.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7643,766,0 13 21620085 rs7317471 T C 3973.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4002,399,0 13 21729952 rs58481196 T TA 262.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=0;QD=7.3;ReadPosRankSum=1.059;SOR=0.56 GT:AD:DP:GQ:PL 0/1:21,15:46:99:300,0,441 13 21732094 rs4770121 C T 3139.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3168,320,0 13 21735998 rs17345690 T C 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.209;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=1.033;SOR=0.732 GT:AD:DP:GQ:PL 0/1:47,29:76:99:784,0,1112 13 22255167 rs3818460 C T 387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.08;ReadPosRankSum=0.851;SOR=0.807 GT:AD:DP:GQ:PL 0/1:30,18:48:99:416,0,810 13 22255301 rs2274296 C T 760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=1.359;SOR=0.547 GT:AD:DP:GQ:PL 0/1:45,36:81:99:789,0,1084 13 22275394 rs9509841 A G 1470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.599;SOR=0.585 GT:AD:DP:GQ:PL 0/1:55,67:122:99:1499,0,1261 13 22275583 rs9509842 G A 4064.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4093,410,0 13 23824783 rs1800351 T G 747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.007;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=1.727;SOR=1.022 GT:AD:DP:GQ:PL 0/1:40,33:73:99:776,0,991 13 23907677 rs2737701 C T 4182.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4211,424,0 13 23928671 rs17325713 C T 1098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=-0.271;SOR=0.959 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1127,0,1628 13 24234517 rs3751364 A G 5474.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.79;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5503,590,0 13 24242165 rs61745191 C T 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=0.89;SOR=0.816 GT:AD:DP:GQ:PL 0/1:113,76:189:99:1709,0,2723 13 24243200 rs3751363 T C 5536.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5565,518,0 13 24411772 rs7333040 T C 4270.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4299,431,0 13 24465743 rs3864971 A G 6702.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.06;QD=31.77;SOR=1.239 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6731,633,0 13 24471039 rs66990269 T G 2208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.255;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.74;MQRankSum=-2.377;QD=9.02;ReadPosRankSum=-0.21;SOR=0.71 GT:AD:DP:GQ:PL 0/1:150,95:245:99:2237,0,3807 13 24797913 rs1220546 C T 3424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=1.22;SOR=0.665 GT:AD:DP:GQ:PL 0/1:116,149:265:99:3453,0,2685 13 24798120 rs1220547 T C 8193.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,252:252:99:8222,756,0 13 24869025 rs7993660 A G 6585.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6614,645,0 13 24895240 rs200205073 G A 67.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=22.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 13 24895393 rs3751355 A G 300.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.87;QD=33.42;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,9:9:27:329,27,0 13 24895559 rs3751357 A G 9434.77 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.83;QD=29.03;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,325:325:99:9463,974,0 13 24895631 rs78083136 T A 2446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=48.98;MQRankSum=-4.585;QD=5.91;ReadPosRankSum=-1.473;SOR=0.646 GT:AD:DP:GQ:PL 0/1:285,129:414:99:2475,0,7305 13 24895684 rs2862239 A G 13163.8 PASS AC=2;AF=1;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.16;QD=30.76;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,428:428:99:13192,1282,0 13 24895745 rs77554188 A G 3370.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.443;ClippingRankSum=0;DB;DP=534;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.5;MQ=57.82;MQRankSum=-13.419;QD=6.31;ReadPosRankSum=-3.078;SOR=0.841 GT:AD:DP:GQ:PL 0/1:371,163:534:99:3399,0,9046 13 25000617 rs7571 C G 2278.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=29.59;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2307,230,0 13 25008588 rs1372085 A G 3833.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.77;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3862,351,0 13 25008630 rs1822135 A G 3717.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3746,351,0 13 25008903 rs9318536 G T 3482.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.79;QD=29.27;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3511,355,0 13 25009099 rs9511259 A C 5104.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.72;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5133,466,0 13 25009297 rs1050112 G T 4912.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4941,492,0 13 25009441 rs13428 C G 2933.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2962,292,0 13 25009485 rs1050110 C G 2836.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2865,271,0 13 25015967 rs61614647 C T 1310.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.59;QD=27.89;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1339,141,0 13 25016008 rs59195808 C T 1514.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.21;QD=27.05;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1543,167,0 13 25016092 rs55888616 C T 1631.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.91;QD=27.2;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1660,180,0 13 25020863 rs9318554 G A 2844.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2873,300,0 13 25020910 rs9507346 G A 1933.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.16;QD=30.22;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1962,192,0 13 25021144 rs78060735 GTCT G 2487.73 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.51;QD=43.64;SOR=1.823 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2525,172,0 13 25021200 rs9318558 A C 4866.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.03;QD=44.65;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,109:109:99:4895,334,0 13 25021201 rs201405094 G A 759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.32;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.11;MQRankSum=-5.984;QD=6.91;ReadPosRankSum=-3.347;SOR=0.672 GT:AD:DP:GQ:PL 0/1:85,25:110:99:788,0,3478 13 25021211 rs7333856 C T 3529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.091;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.5;MQ=52.49;MQRankSum=6.162;QD=29.66;ReadPosRankSum=2.164;SOR=0.863 GT:AD:DP:GQ:PL 0/1:29,90:119:99:3558,0,866 13 25021245 rs7334587 A G 2898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.781;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.31;MLEAC=1;MLEAF=0.5;MQ=54.97;MQRankSum=5.132;QD=17.57;ReadPosRankSum=-2.193;SOR=0.818 GT:AD:DP:GQ:PL 0/1:52,113:165:99:2927,0,1856 13 25021263 rs77269056 T C 833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.881;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.4;MQRankSum=-6.759;QD=4.79;ReadPosRankSum=3.592;SOR=0.66 GT:AD:DP:GQ:PL 0/1:118,56:174:99:862,0,4544 13 25021323 rs73172125 A G 643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.785;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=3.436;MLEAC=1;MLEAF=0.5;MQ=56.73;MQRankSum=-7.98;QD=4.7;ReadPosRankSum=-3.003;SOR=0.437 GT:AD:DP:GQ:PL 0/1:95,42:137:99:672,0,2562 13 25027744 rs4770684 A G 1821.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1850,189,0 13 25029218 rs2275660 C T 5001.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5030,522,0 13 25264723 rs7997850 C T 2560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.1;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.42;ReadPosRankSum=-0.619;SOR=0.583 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,67:147:99:0|1:25264715_G_A:2589,0,4247 13 25265103 rs7981616 A G 2259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.345;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=-1.314;SOR=0.478 GT:AD:DP:GQ:PL 0/1:78,98:176:99:2288,0,1883 13 25265139 rs2071490 T C 2381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=1.14;SOR=0.499 GT:AD:DP:GQ:PL 0/1:90,102:192:99:2410,0,2034 13 25272870 rs2289901 C T 2826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.7;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-3.084;SOR=0.754 GT:AD:DP:GQ:PL 0/1:168,123:291:99:2855,0,3977 13 25283494 rs895423 C T 721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.372;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=3.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=1.154;SOR=1.094 GT:AD:DP:GQ:PL 0/1:52,27:79:99:750,0,1525 13 25355965 rs5802305 GT G 1224.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;MQRankSum=0.267;QD=23.55;ReadPosRankSum=0.578;SOR=0.457 GT:AD:DP:GQ:PL 1/1:1,51:57:99:1262,142,0 13 25370255 rs1446294 A G 1756.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1785,168,0 13 25399752 rs2121253 A G 2083.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2112,207,0 13 25404743 rs4769382 T C 1641.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1670,173,0 13 25419176 rs6490984 A G 2277.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2306,231,0 13 25460428 rs9511502 A G 3362.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.56;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3391,365,0 13 25670676 rs117014540 G A 2141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.021;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=4.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.238;SOR=0.421 GT:AD:DP:GQ:PL 0/1:79,84:163:99:2170,0,2258 13 25670953 rs74040928 G A 254.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.728;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=-10.592;QD=1.13;ReadPosRankSum=-1.33;SOR=0.775 GT:AD:DP:GQ:PGT:PID:PL 0/1:205,21:226:99:0|1:25670953_G_A:283,0,8551 13 25670955 rs79397892 C T 245.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.814;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=-10.807;QD=1.09;ReadPosRankSum=-1.729;SOR=0.858 GT:AD:DP:GQ:PGT:PID:PL 0/1:204,22:226:99:0|1:25670953_G_A:274,0,8677 13 25670978 . C T 218.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.555;ClippingRankSum=0;DP=230;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-10.956;QD=0.96;ReadPosRankSum=-0.004;SOR=0.967 GT:AD:DP:GQ:PGT:PID:PL 0/1:209,20:229:99:0|1:25670953_G_A:247,0,8797 13 25670981 rs77476965 G C 218.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-10.422;QD=0.96;ReadPosRankSum=0.071;SOR=0.734 GT:AD:DP:GQ:PGT:PID:PL 0/1:209,20:229:99:0|1:25670953_G_A:247,0,8797 13 25670984 rs11619791 C T 194.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.378;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.63;MQRankSum=-10.277;QD=0.87;ReadPosRankSum=0.111;SOR=0.73 GT:AD:DP:GQ:PGT:PID:PL 0/1:203,20:223:99:0|1:25670953_G_A:223,0,9133 13 25670988 rs74564616 T G 260.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.424;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-9.935;QD=1.13;ReadPosRankSum=-0.24;SOR=0.718 GT:AD:DP:GQ:PGT:PID:PL 0/1:209,22:231:99:0|1:25670953_G_A:289,0,8794 13 25671008 rs76447065 C T 419.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.919;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=3.97;MLEAC=1;MLEAF=0.5;MQ=59.72;MQRankSum=-8.841;QD=1.79;ReadPosRankSum=-0.184;SOR=1.136 GT:AD:DP:GQ:PGT:PID:PL 0/1:210,25:235:99:0|1:25670953_G_A:448,0,8908 13 25671015 rs75314628 A G 435.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.777;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.922;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-8.258;QD=1.88;ReadPosRankSum=-0.114;SOR=1.098 GT:AD:DP:GQ:PGT:PID:PL 0/1:207,25:232:99:0|1:25670953_G_A:464,0,8656 13 25671027 rs78826513 A G 472.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.283;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-7.839;QD=1.99;ReadPosRankSum=-0.036;SOR=0.99 GT:AD:DP:GQ:PGT:PID:PL 0/1:209,28:237:99:0|1:25670953_G_A:501,0,8629 13 25671080 rs76241879 A G 149.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=4.793;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=-7.135;QD=0.76;ReadPosRankSum=0.641;SOR=1.262 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,18:198:99:0|1:25671080_A_G:178,0,7343 13 25671089 rs75281454 G T 191.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=5.036;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-6.348;QD=1.03;ReadPosRankSum=1.591;SOR=1.353 GT:AD:DP:GQ:PGT:PID:PL 0/1:169,17:186:99:0|1:25671080_A_G:220,0,7358 13 25671097 rs140090397 A AT 182.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=4.76;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=-6.276;QD=0.95;ReadPosRankSum=1.804;SOR=1.145 GT:AD:DP:GQ:PGT:PID:PL 0/1:175,18:193:99:0|1:25671080_A_G:220,0,7287 13 25671122 rs79072440 C T 149.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.111;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=6.129;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=-7.111;QD=0.68;ReadPosRankSum=2.417;SOR=1.019 GT:AD:DP:GQ:PL 0/1:199,20:219:99:178,0,5776 13 25671143 rs78671990 A G 236.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.389;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.81;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=-8.371;QD=1;ReadPosRankSum=0.766;SOR=0.837 GT:AD:DP:GQ:PGT:PID:PL 0/1:215,22:237:99:0|1:25671143_A_G:265,0,9082 13 25671149 rs368285293 ACGG A 244.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.52;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-9.449;QD=1;ReadPosRankSum=-0.28;SOR=0.705 GT:AD:DP:GQ:PGT:PID:PL 0/1:221,23:244:99:0|1:25671143_A_G:282,0,9455 13 25671154 rs371971190 AGACGGAACT A 190.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.73;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.5;MQ=59.59;MQRankSum=-9.716;QD=0.74;ReadPosRankSum=-0.588;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:234,23:257:99:0|1:25671143_A_G:228,0,10218 13 25671168 rs78552667 C T 371.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.422;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=-10.547;QD=1.45;ReadPosRankSum=-1.534;SOR=0.619 GT:AD:DP:GQ:PGT:PID:PL 0/1:231,26:257:99:0|1:25671143_A_G:400,0,9797 13 25671172 rs79593984 C A 432.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.932;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-10.732;QD=1.63;ReadPosRankSum=-2.614;SOR=0.726 GT:AD:DP:GQ:PGT:PID:PL 0/1:235,30:265:99:0|1:25671143_A_G:461,0,9715 13 25671195 rs201411821 A G 649.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.224;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.5;MQ=59.26;MQRankSum=-12.754;QD=2.33;ReadPosRankSum=-2.785;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 0/1:245,34:279:99:0|1:25671195_A_G:678,0,10295 13 25671200 rs76111404 C T 796.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.511;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=7.379;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=-13.688;QD=2.86;ReadPosRankSum=-1.458;SOR=1.317 GT:AD:DP:GQ:PGT:PID:PL 0/1:249,30:279:99:0|1:25671195_A_G:825,0,10630 13 25671206 rs76614854 A G 688.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.259;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=6.868;MLEAC=1;MLEAF=0.5;MQ=59.11;MQRankSum=-13.893;QD=2.43;ReadPosRankSum=-2.258;SOR=1.308 GT:AD:DP:GQ:PGT:PID:PL 0/1:248,35:283:99:0|1:25671195_A_G:717,0,10392 13 25671210 rs80062522 C T 718.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.498;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=9.872;MLEAC=1;MLEAF=0.5;MQ=59.1;MQRankSum=-13.815;QD=2.57;ReadPosRankSum=-1.765;SOR=1.48 GT:AD:DP:GQ:PGT:PID:PL 0/1:245,35:280:99:0|1:25671195_A_G:747,0,10363 13 25671214 rs201081849 T G 739.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.883;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=10.932;MLEAC=1;MLEAF=0.5;MQ=59.04;MQRankSum=-13.386;QD=2.69;ReadPosRankSum=-1.346;SOR=1.489 GT:AD:DP:GQ:PL 0/1:239,36:277:99:768,0,9989 13 25671672 rs78778235 A G 30.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.14;MQRankSum=-12.282;QD=0.14;ReadPosRankSum=2.261;SOR=0.62 GT:AD:DP:GQ:PGT:PID:PL 0/1:210,16:226:59:0|1:25671667_A_T:59,0,35113 13 25671699 rs201614365 G C 44.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59;MQRankSum=-12.737;QD=0.21;ReadPosRankSum=-0.202;SOR=0.683 GT:AD:DP:GQ:PGT:PID:PL 0/1:197,14:211:73:0|1:25671667_A_T:73,0,33456 13 25825889 rs4312169 T C 3321.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3350,344,0 13 25831888 rs7995033 T C 3598.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3627,369,0 13 25876011 rs11556093 G A 2282.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.65;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2311,261,0 13 26273385 rs6491088 G C 3822.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3851,381,0 13 26586775 rs2274135 C T 1470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=1.289;SOR=0.796 GT:AD:DP:GQ:PL 0/1:55,62:117:99:1499,0,1283 13 26624935 rs111516934 C T 7585.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7614,719,0 13 26788114 rs301047 A G 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=1.76;SOR=0.635 GT:AD:DP:GQ:PL 0/1:81,74:155:99:1802,0,2098 13 28009920 rs1218825 G C 4133.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4162,416,0 13 28143229 rs8002697 A G 2379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.99;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=0.704;SOR=0.525 GT:AD:DP:GQ:PL 0/1:86,97:183:99:2408,0,2011 13 28239940 rs11029 G C 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.532;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.03;SOR=0.711 GT:AD:DP:GQ:PL 0/1:80,59:139:99:1429,0,2053 13 28239970 rs14105 G A 1467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-0.564;SOR=0.739 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1496,0,2144 13 28367061 rs1231058 A G 3198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.471;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=6.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-0.274;SOR=1.067 GT:AD:DP:GQ:PL 0/1:132,116:248:99:3227,0,3490 13 28537242 rs1805108 A C 4688.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.465 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4717,477,0 13 28537317 rs1805107 G A 4757.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4786,468,0 13 28552425 rs9579139 G T 2820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.711;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-0.486;SOR=0.619 GT:AD:DP:GQ:PL 0/1:162,114:276:99:2849,0,4186 13 28562605 rs3897926 T G 1428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.816;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=1.691;SOR=0.847 GT:AD:DP:GQ:PL 0/1:85,62:147:99:1457,0,1958 13 28609825 rs2491227 A G 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-1.788;SOR=0.927 GT:AD:DP:GQ:PL 0/1:50,38:88:99:917,0,1297 13 28610183 rs2491231 A G 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.091;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-1.224;SOR=0.807 GT:AD:DP:GQ:PL 0/1:34,42:76:99:1059,0,740 13 28624294 rs1933437 G A 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=1.709;SOR=0.679 GT:AD:DP:GQ:PL 0/1:41,62:103:99:1539,0,911 13 28636084 rs7338903 G A 4308.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4337,462,0 13 28835527 rs5802469 T TC 2542.73 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.73;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2580,193,0 13 28854692 rs61089531 A AT 408.31 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=0;QD=15.12;ReadPosRankSum=-0.83;SOR=0.622 GT:AD:DP:GQ:PL 0/1:7,20:45:76:433,0,76 13 28883061 rs7993418 G A 2289.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2318,243,0 13 28886113 rs7328692 A G 1462.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1491,150,0 13 28893642 rs2296189 A G 799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.26;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.691;SOR=0.422 GT:AD:DP:GQ:PL 0/1:45,39:84:99:828,0,1155 13 29275102 rs947027 T C 2410.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.94;SOR=1.576 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2439,206,0 13 29278063 rs34444192 T TA 1026.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.89;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.439;QD=11.94;ReadPosRankSum=-0.627;SOR=0.507 GT:AD:DP:GQ:PL 0/1:43,43:86:99:1064,0,956 13 29855822 rs3751335 C T 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.924;SOR=1.101 GT:AD:DP:GQ:PL 0/1:52,46:98:99:1234,0,1496 13 29855847 rs3751336 C T 1702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=1.487;SOR=0.707 GT:AD:DP:GQ:PL 0/1:74,69:143:99:1731,0,1885 13 29898768 rs928661 A C 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=-0.37;SOR=0.739 GT:AD:DP:GQ:PL 0/1:54,38:92:99:878,0,1325 13 30091714 rs2482089 G A 2628.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.408 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2657,266,0 13 30091819 rs2482090 G C 3830.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3859,369,0 13 30805627 rs202087 A G 2443.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.395 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2472,247,0 13 30829757 . CAA C,CA 1320.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=3.633;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.42;MQRankSum=0.991;QD=14.36;ReadPosRankSum=1.363;SOR=0.599 GT:AD:DP:GQ:PL 1/2:17,26,49:109:99:1358,522,968,272,0,368 13 31036681 rs1929606 A G 2528.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.16;QD=29.4;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2557,258,0 13 31287979 rs147763360 G GTA 1478.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.66;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=3.729;QD=8.31;ReadPosRankSum=-1.33;SOR=0.781 GT:AD:DP:GQ:PL 0/1:106,72:178:99:1516,0,4179 13 31309830 rs4769055 C A 1858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.516;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=1.993;SOR=0.654 GT:AD:DP:GQ:PL 0/1:73,79:152:99:1887,0,1949 13 31318308 rs3803277 C A 987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=-0.786;SOR=0.662 GT:AD:DP:GQ:PL 0/1:67,51:118:99:1016,0,1543 13 31480827 rs9531945 A G 6254.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6283,624,0 13 31531009 rs12857479 G A 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=0.527;SOR=0.883 GT:AD:DP:GQ:PL 0/1:37,59:96:99:1422,0,862 13 31543095 rs2274869 C T 1398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.25;SOR=0.737 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1427,0,1637 13 31722620 rs35594388 TA T 350.52 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.61;ReadPosRankSum=-1.101;SOR=0.349 GT:AD:DP:GQ:PL 0/1:6,18:31:37:380,0,37 13 31725260 rs11556147 A G 3382.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.42;ReadPosRankSum=-0.461;SOR=0.321 GT:AD:DP:GQ:PL 1/1:1,114:115:99:3411,306,0 13 31725732 rs4941772 A C 2575.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=1.31 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2604,240,0 13 31729729 rs1047086 A G 2634.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.16;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2663,290,0 13 31789169 rs35344913 CT C 1189.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.279;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=0.488;QD=21.63;ReadPosRankSum=1.967;SOR=1.107 GT:AD:DP:GQ:PL 1/1:4,51:65:91:1199,91,0 13 31821256 rs9542307 C G 2257.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2286,243,0 13 31821992 rs4943266 T C 1166.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1195,111,0 13 32360691 . TA T 42.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.85;ReadPosRankSum=-0.291;SOR=0.737 GT:AD:DP:GQ:PL 0/1:41,9:50:80:80,0,979 13 32676114 rs364995 A G 1195.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1224,126,0 13 32758834 rs798971 A G 1066.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1095,108,0 13 32776603 rs2428249 T C 3618.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.05;ReadPosRankSum=-0.538;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3647,348,0 13 32785086 rs798981 G A 4172.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4201,436,0 13 32786416 rs798983 T A 1305.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1334,135,0 13 32811607 rs2806639 G A 1443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.58;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=1.13;SOR=0.632 GT:AD:DP:GQ:PL 0/1:90,64:154:99:1472,0,2155 13 32852585 rs11617081 C T 323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.637;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=1.058;SOR=1.609 GT:AD:DP:GQ:PL 0/1:10,13:23:99:352,0,230 13 32906729 rs144848 A C 2804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.283;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.61;ReadPosRankSum=0.192;SOR=0.597 GT:AD:DP:GQ:PL 0/1:87,105:192:99:2833,0,2088 13 32911888 rs1801406 A G 1480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.048;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-1.01;SOR=0.733 GT:AD:DP:GQ:PL 0/1:67,54:121:99:1509,0,1694 13 32913055 rs206075 A G 5924.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5953,572,0 13 32915005 rs206076 G C 4963.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.54;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4992,444,0 13 32929387 rs169547 T C 3668.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.35;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3697,329,0 13 32936646 rs9534262 T C 965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.298;SOR=0.46 GT:AD:DP:GQ:PL 0/1:37,41:78:99:994,0,1031 13 33017043 rs3742318 T C 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.455;SOR=0.548 GT:AD:DP:GQ:PL 0/1:47,61:108:99:1350,0,1229 13 33332208 rs376698450 CT C 47.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.508;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.59;ReadPosRankSum=-1.208;SOR=0.859 GT:AD:DP:GQ:PL 0/1:23,7:37:85:85,0,530 13 33590851 rs2772364 T C 8362.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,258:258:99:8391,774,0 13 33628138 rs9536314 T G 4112.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.44;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4141,369,0 13 33628193 rs9527025 G C 4560.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.05;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4589,413,0 13 33628239 rs9527026 G A 4883.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4912,497,0 13 33629260 rs138916294 T C 2633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.148;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=-0.607;SOR=0.58 GT:AD:DP:GQ:PL 0/1:91,106:197:99:2662,0,2091 13 33635463 rs648202 T C 4962.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4991,504,0 13 33635835 rs649964 T C 4976.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5005,521,0 13 33704154 rs596742 C T 8250.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8279,807,0 13 35644952 rs7995564 A C 2536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-1.541;QD=12.44;ReadPosRankSum=0.617;SOR=0.684 GT:AD:DP:GQ:PL 0/1:90,114:204:99:2565,0,1921 13 35735976 rs17051895 A G 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.447;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-1.088;SOR=0.697 GT:AD:DP:GQ:PL 0/1:116,110:226:99:2505,0,2525 13 36225929 rs7991019 T C 1934.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1963,186,0 13 36385031 rs2322807 G T 4746.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4775,505,0 13 36397031 rs3751346 C G 4348.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=1.559 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4377,417,0 13 36401838 rs35734430 A G 1491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.775;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.454;SOR=0.897 GT:AD:DP:GQ:PL 0/1:75,60:135:99:1520,0,1704 13 36401909 rs9574699 T C 1334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=1.028;SOR=0.522 GT:AD:DP:GQ:PL 0/1:57,60:117:99:1363,0,1366 13 36402426 rs2296645 A G 1242.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.937;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.59;SOR=0.732 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1271,0,1111 13 36686138 rs3748308 T C 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.36;SOR=0.547 GT:AD:DP:GQ:PL 0/1:136,118:254:99:2807,0,3287 13 37393904 rs193240312 T C 4033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15;ReadPosRankSum=-1.549;SOR=0.819 GT:AD:DP:GQ:PL 0/1:116,153:269:99:4062,0,2827 13 38153351 rs7323378 T C 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.592;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=0.524;SOR=0.569 GT:AD:DP:GQ:PL 0/1:47,54:101:99:1519,0,1113 13 38172867 rs17197663 G A 967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.87;ReadPosRankSum=0.163;SOR=0.631 GT:AD:DP:GQ:PL 0/1:22,39:61:99:996,0,554 13 38211105 rs73184536 T C 2273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=1.162;SOR=0.618 GT:AD:DP:GQ:PL 0/1:78,91:169:99:2302,0,1959 13 38211313 rs75661457 T C 2584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.54;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=1.03;SOR=0.581 GT:AD:DP:GQ:PL 0/1:123,103:226:99:2613,0,3105 13 38237872 rs2985171 A G 3062.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3091,291,0 13 38320594 . TAA T,TA 2450.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.199;ClippingRankSum=0;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.36;MQRankSum=0.596;QD=19.92;ReadPosRankSum=-1.381;SOR=0.904 GT:AD:DP:GQ:PL 1/2:8,23,92:130:99:2488,1816,2254,427,0,274 13 38357471 rs3904512 G A 1349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.783;SOR=0.973 GT:AD:DP:GQ:PL 0/1:63,60:123:99:1378,0,1495 13 38924117 rs2231331 C G 2608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-1.422;SOR=0.601 GT:AD:DP:GQ:PL 0/1:113,99:212:99:2637,0,3070 13 38924263 rs2231332 T C 2906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.129;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-1.234;SOR=0.825 GT:AD:DP:GQ:PL 0/1:127,111:238:99:2935,0,3209 13 39262057 rs1868464 G A 6503.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6532,618,0 13 39263714 rs2496423 T C 5405.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=1.008 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5434,494,0 13 39264690 rs2496425 T C 4377.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4406,417,0 13 39343822 rs9603422 C T 4163.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4192,439,0 13 39430314 rs9548509 C T 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.837;QD=14.37;ReadPosRankSum=-0.512;SOR=0.832 GT:AD:DP:GQ:PL 0/1:33,50:83:99:1221,0,743 13 39542531 rs7323023 A C 3521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.383;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-1.419;SOR=0.583 GT:AD:DP:GQ:PL 0/1:134,143:277:99:3550,0,3078 13 39586343 rs9576697 G C 3618.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3647,369,0 13 39587166 rs11147745 A G 5893.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5922,602,0 13 39587677 rs3751379 A G 7877.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7906,743,0 13 39587865 rs3751378 A C 6792.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.19;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,169:169:99:1|1:39587865_A_C:6821,511,0 13 39587889 rs3751377 T C 5586.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.65;SOR=1.01 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,128:128:99:1|1:39587865_A_C:5615,391,0 13 39598698 rs67984592 TA T,TAA 569.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=15.66;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.39;MQRankSum=0.491;QD=16.28;ReadPosRankSum=-1.755;SOR=1.013 GT:AD:DP:GQ:PL 1/2:4,22,9:47:99:607,159,254,485,0,744 13 39622075 rs9532318 T C 2070.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2099,210,0 13 40229891 rs3812882 G A 1328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.167;QD=9.36;ReadPosRankSum=0.814;SOR=0.576 GT:AD:DP:GQ:PL 0/1:81,61:142:99:1357,0,2031 13 40229957 rs3812883 T A 1531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-1.051;SOR=0.722 GT:AD:DP:GQ:PL 0/1:77,72:149:99:1560,0,1919 13 40263979 rs9548882 T C 543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=1.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.7;ReadPosRankSum=-0.366;SOR=0.963 GT:AD:DP:GQ:PL 0/1:14,23:37:99:572,0,347 13 41382711 rs17849654 A T 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.973;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=0.582;QD=11.77;ReadPosRankSum=-0.508;SOR=0.776 GT:AD:DP:GQ:PL 0/1:59,57:116:99:1394,0,1434 13 41515286 rs1056820 T A 2976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.659;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=8.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.662;SOR=0.507 GT:AD:DP:GQ:PL 0/1:110,122:232:99:3005,0,2617 13 41517985 rs3764056 A G 850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.18;ReadPosRankSum=1.253;SOR=0.78 GT:AD:DP:GQ:PL 0/1:62,42:104:99:879,0,1425 13 41525586 rs3736953 A G 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.225;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=1.084;SOR=0.582 GT:AD:DP:GQ:PL 0/1:39,36:75:99:969,0,977 13 41533052 rs7799 T C 2062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.331;SOR=0.786 GT:AD:DP:GQ:PL 0/1:89,83:172:99:2091,0,2412 13 41639425 . TA T 465.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=1.052;SOR=0.636 GT:AD:DP:GQ:PL 0/1:25,25:84:99:503,0,334 13 41705495 rs584594 A G 4812.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.66;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4841,429,0 13 41767338 rs2039134 A G 7444.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.73;QD=44.05;SOR=0.83 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,169:169:99:1|1:41767338_A_G:7473,509,0 13 41767341 rs2039135 A G 7362.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.52;QD=44.89;SOR=0.876 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,164:164:99:1|1:41767338_A_G:7391,500,0 13 41834744 rs2297555 C T 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.387;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-1.423;SOR=0.897 GT:AD:DP:GQ:PL 0/1:89,66:155:99:1625,0,2276 13 41902939 rs3812896 T C 1764.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1793,183,0 13 42032572 rs7136 T C 2126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.241;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.879;SOR=0.685 GT:AD:DP:GQ:PL 0/1:104,93:197:99:2155,0,2455 13 42189232 rs3862741 C G 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.87;ReadPosRankSum=-1.159;SOR=0.661 GT:AD:DP:GQ:PL 0/1:44,70:114:99:1837,0,1105 13 42385446 rs9562353 T C 1118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.29;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=2.151;SOR=0.49 GT:AD:DP:GQ:PL 0/1:61,51:112:99:1147,0,1474 13 42481712 rs2003064 C T 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=1.2;SOR=0.587 GT:AD:DP:GQ:PL 0/1:47,63:110:99:1434,0,994 13 42701717 rs605371 A G 1515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=0.27;SOR=0.65 GT:AD:DP:GQ:PL 0/1:83,73:156:99:1544,0,1805 13 42703682 rs3742261 T C 1724.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.82;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1753,185,0 13 42729441 rs3208827 C T 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=2.019;SOR=0.553 GT:AD:DP:GQ:PL 0/1:72,50:122:99:1034,0,1737 13 42764564 rs7324235 C G 3722.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3751,381,0 13 42803341 rs545602 T C 1290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.003;SOR=0.646 GT:AD:DP:GQ:PL 0/1:63,59:122:99:1319,0,1432 13 42872719 rs2273952 A G 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.807;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-2.314;SOR=0.671 GT:AD:DP:GQ:PL 0/1:57,63:120:99:1576,0,1309 13 42872779 rs2273951 C T 1775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.895;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=0.79;SOR=0.453 GT:AD:DP:GQ:PL 0/1:77,72:149:99:1804,0,2156 13 42877265 rs9315906 G C 2263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.023;SOR=0.627 GT:AD:DP:GQ:PL 0/1:87,90:177:99:2292,0,2263 13 42882620 rs17521586 C T 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.442;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=0.685;SOR=0.678 GT:AD:DP:GQ:PL 0/1:64,46:110:99:966,0,1427 13 42882762 rs238314 A G 1982.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2011,200,0 13 43155443 rs2277439 G A 1436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.215;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-1.919;SOR=1.085 GT:AD:DP:GQ:PL 0/1:74,64:138:99:1465,0,1675 13 43788158 rs703207 G A 4931.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4960,526,0 13 44457925 rs3764147 A G 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.73;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=5.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.98;ReadPosRankSum=-0.772;SOR=1.238 GT:AD:DP:GQ:PL 0/1:40,53:93:99:1421,0,938 13 45563464 rs1140993 G C 6749.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6778,648,0 13 46067593 rs2985959 G A 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.958;QD=11.88;ReadPosRankSum=-0.338;SOR=0.401 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1442,0,1586 13 46077381 rs3014960 G A 1047.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=1.751 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1076,99,0 13 46103935 rs2274285 A G 1337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.229;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.74;ReadPosRankSum=1.164;SOR=0.607 GT:AD:DP:GQ:PL 0/1:37,48:85:99:1366,0,816 13 46108853 rs3014902 T C 4820.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=1.588 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,108:108:99:1|1:46108853_T_C:4849,325,0 13 46108854 rs2985989 G A 4820.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=1.588 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,108:108:99:1|1:46108853_T_C:4849,325,0 13 46115731 rs1536207 C A 1847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.223;SOR=0.537 GT:AD:DP:GQ:PL 0/1:92,80:172:99:1876,0,2271 13 46288017 rs79707842 C A 3362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.543;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=3.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.247;SOR=0.534 GT:AD:DP:GQ:PL 0/1:133,150:283:99:3391,0,3453 13 46288145 rs7317245 A G 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.157;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-2.016;SOR=0.538 GT:AD:DP:GQ:PL 0/1:107,87:194:99:2110,0,2470 13 46541673 rs9534264 T A 2535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.58;SOR=0.728 GT:AD:DP:GQ:PL 0/1:92,109:201:99:2564,0,2161 13 46562935 rs1134071 A G 2396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=1.148;SOR=0.589 GT:AD:DP:GQ:PL 0/1:105,103:208:99:2425,0,2480 13 46629944 rs1926447 A G 2252.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2281,227,0 13 46629995 rs1926446 C A 1796.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1825,189,0 13 46641466 rs9316179 A G 1569.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1598,162,0 13 46641481 rs7337140 T C 1700.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1729,174,0 13 46648094 rs3742264 C T 2034.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2063,207,0 13 46656669 rs2296642 A G 2787.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2816,291,0 13 46708291 rs4941543 T C 3581.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3610,347,0 13 46840996 rs41284167 A C 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.805;SOR=0.696 GT:AD:DP:GQ:PL 0/1:53,53:106:99:1336,0,1341 13 47260054 rs842381 T C 2620.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=1.923 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2649,240,0 13 47261970 rs842375 T C 1048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=4.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.659;SOR=0.388 GT:AD:DP:GQ:PL 0/1:41,46:87:99:1077,0,989 13 47273458 rs706621 G C 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-1.759;SOR=0.697 GT:AD:DP:GQ:PL 0/1:53,47:100:99:1227,0,1382 13 47279454 rs842387 A G 1169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.1;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=4.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-2.035;SOR=1.132 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1198,0,1237 13 47297352 rs7319836 G A 835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=5.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.925;SOR=1.421 GT:AD:DP:GQ:PL 0/1:33,35:68:99:864,0,791 13 47308109 rs2298086 A G 1768.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.08;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1797,189,0 13 47315984 rs3742274 T C 5902.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5931,570,0 13 47409034 rs6314 G A 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.13;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=1.247;SOR=0.693 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1448,0,1287 13 47469940 rs6313 G A 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=-1.125;SOR=0.657 GT:AD:DP:GQ:PL 0/1:58,73:131:99:1868,0,1464 13 47469968 rs1805055 G T 1284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.979;SOR=0.692 GT:AD:DP:GQ:PL 0/1:69,54:123:99:1313,0,1820 13 47470824 rs6312 C T 961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.404;SOR=0.527 GT:AD:DP:GQ:PL 0/1:40,38:78:99:990,0,1019 13 48547467 rs7320366 A T 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=0.28;SOR=0.683 GT:AD:DP:GQ:PL 0/1:46,62:108:99:1474,0,1040 13 48563008 rs6561424 G A 1072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=1.1;SOR=0.538 GT:AD:DP:GQ:PL 0/1:54,49:103:99:1101,0,1371 13 48916860 rs187110786 C G 602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.034;SOR=1.051 GT:AD:DP:GQ:PL 0/1:20,27:47:99:631,0,407 13 49051481 rs3092904 T A 494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.356;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.38;ReadPosRankSum=-0.832;SOR=0.609 GT:AD:DP:GQ:PL 0/1:42,25:67:99:523,0,996 13 49951142 rs8002829 T C 1184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.962;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=-2.695;SOR=0.889 GT:AD:DP:GQ:PL 0/1:75,50:125:99:1213,0,1746 13 49951193 rs8002858 T C 1276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.807;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=1.011;SOR=0.547 GT:AD:DP:GQ:PL 0/1:74,54:128:99:1305,0,1602 13 50050620 rs7998427 A G 649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.66;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.463;SOR=0.363 GT:AD:DP:GQ:PL 0/1:23,25:48:99:678,0,617 13 50054346 rs7996852 G T 327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.817;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=4.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.12;ReadPosRankSum=0.348;SOR=1.292 GT:AD:DP:GQ:PL 0/1:47,17:64:99:356,0,1223 13 50057097 rs2057413 G A 752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.774;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.458;SOR=0.446 GT:AD:DP:GQ:PL 0/1:31,35:66:99:781,0,839 13 50057633 rs11619265 A G 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.277;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=1.219;SOR=0.622 GT:AD:DP:GQ:PL 0/1:32,33:65:99:861,0,776 13 50070244 rs370049093 GGGGC G 1351.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.87;QD=42.24;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,32:32:98:1389,98,0 13 50080847 rs2031532 A G 985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.517;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.917;SOR=0.608 GT:AD:DP:GQ:PL 0/1:43,43:86:99:1014,0,903 13 50102810 rs1046295 G A 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.622;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=0.427;SOR=0.487 GT:AD:DP:GQ:PL 0/1:47,35:82:99:774,0,1069 13 50108252 rs7317982 T C 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.973;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.899;SOR=0.641 GT:AD:DP:GQ:PL 0/1:59,62:121:99:1581,0,1366 13 50123622 rs3751384 G C 3142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.117;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.469;SOR=0.738 GT:AD:DP:GQ:PL 0/1:178,136:314:99:3171,0,4316 13 50123649 rs3751383 G A 4520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.901;QD=12.92;ReadPosRankSum=0.051;SOR=0.598 GT:AD:DP:GQ:PL 0/1:158,192:350:99:4549,0,3668 13 50123688 rs3751382 G T 4654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.099;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.941;QD=12.28;ReadPosRankSum=-0.992;SOR=0.695 GT:AD:DP:GQ:PL 0/1:179,200:379:99:4683,0,3933 13 50125622 rs9568246 C T 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=6.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.15;SOR=0.332 GT:AD:DP:GQ:PL 0/1:63,59:122:99:1474,0,1731 13 50126382 rs2274278 G A 3980.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=30.86;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4009,387,0 13 50134099 rs17073145 T C 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.549;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.502;SOR=0.672 GT:AD:DP:GQ:PL 0/1:67,48:115:99:1264,0,1826 13 50134150 rs17073150 A G 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=0.473;SOR=0.651 GT:AD:DP:GQ:PL 0/1:90,64:154:99:1314,0,2058 13 50141276 rs9562899 C T 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=1.266;SOR=0.664 GT:AD:DP:GQ:PL 0/1:48,29:77:99:697,0,1372 13 50141345 rs4942848 G A 1749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.451;SOR=0.712 GT:AD:DP:GQ:PL 0/1:59,76:135:99:1778,0,1328 13 50141362 rs9562900 G A 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-0.541;SOR=0.782 GT:AD:DP:GQ:PL 0/1:74,56:130:99:1220,0,1818 13 50205025 rs3803185 T C 3073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.971;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.617;SOR=0.604 GT:AD:DP:GQ:PL 0/1:121,119:240:99:3102,0,3006 13 50296115 rs1127021 C T 3055.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3084,312,0 13 51397440 rs9563002 C A 2132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.5;MQ=57.58;MQRankSum=-0.153;QD=9.56;ReadPosRankSum=-0.598;SOR=0.78 GT:AD:DP:GQ:PL 0/1:128,95:223:99:2161,0,3330 13 52365354 rs61729904 G T 474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-1.023;SOR=0.828 GT:AD:DP:GQ:PL 0/1:23,20:43:99:503,0,591 13 52372000 rs61741906 C G 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=3.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=2.507;SOR=1.167 GT:AD:DP:GQ:PL 0/1:48,45:93:99:1105,0,1223 13 52373687 rs490799 A G 2755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.425;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=6.119;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.418;SOR=0.42 GT:AD:DP:GQ:PL 0/1:127,116:243:99:2784,0,3088 13 52373814 rs9535761 G C 4414.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4443,429,0 13 52440130 rs1054515 A G 1862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=0.563;SOR=0.674 GT:AD:DP:GQ:PL 0/1:99,80:179:99:1891,0,2538 13 52508876 rs193922100 C T 3609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.478;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.505;SOR=0.774 GT:AD:DP:GQ:PL 0/1:188,150:338:99:3638,0,4460 13 52511606 rs2282057 G A 3378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=1.346;SOR=0.731 GT:AD:DP:GQ:PL 0/1:121,135:256:99:3407,0,3119 13 52515354 rs1801249 A G 2138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.554;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=1.584;SOR=0.572 GT:AD:DP:GQ:PL 0/1:95,86:181:99:2167,0,2144 13 52523808 rs732774 C T 1873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.025;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.048;SOR=0.723 GT:AD:DP:GQ:PL 0/1:108,87:195:99:1902,0,2777 13 52524488 rs1061472 T C 2760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.903;SOR=0.669 GT:AD:DP:GQ:PL 0/1:117,117:234:99:2789,0,2779 13 52544805 rs1801244 C G 2395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=5.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=0.178;SOR=1.094 GT:AD:DP:GQ:PL 0/1:80,93:173:99:2424,0,2077 13 52548140 rs1801243 A C 3220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.164;SOR=0.758 GT:AD:DP:GQ:PL 0/1:133,142:275:99:3249,0,3055 13 52585548 rs2277448 G T 2975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=4.093;QD=9.63;ReadPosRankSum=0.264;SOR=0.818 GT:AD:DP:GQ:PL 0/1:184,125:309:99:3004,0,5065 13 52585591 rs148013251 T TCGGCG 6744.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.35;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=3.805;QD=16.99;ReadPosRankSum=-0.035;SOR=0.767 GT:AD:DP:GQ:PL 0/1:223,174:397:99:6782,0,8761 13 52603194 rs3742289 G T 3694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.96;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=4.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.522;SOR=0.523 GT:AD:DP:GQ:PL 0/1:189,158:347:99:3723,0,4892 13 52603775 rs3742291 C T 3806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.111;SOR=0.533 GT:AD:DP:GQ:PL 0/1:174,150:324:99:3835,0,4766 13 52649974 . CA C 161.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0;DP=55;ExcessHet=3.0103;FS=4.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.05;ReadPosRankSum=-0.576;SOR=0.288 GT:AD:DP:GQ:PL 0/1:21,11:44:99:199,0,441 13 52656450 . T TA 75.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.611;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.76;ReadPosRankSum=-0.119;SOR=0.737 GT:AD:DP:GQ:PL 0/1:34,9:45:99:113,0,729 13 52701490 rs3076657 A ACTT 1852.73 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.19;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1890,126,0 13 52701637 rs1886544 T G 1084.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1113,114,0 13 52709938 rs2296351 A C 3745.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.541;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.59;ReadPosRankSum=-0.097;SOR=0.772 GT:AD:DP:GQ:PL 1/1:2,129:131:99:3774,343,0 13 52718050 rs3837575 C CT 1097.73 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.15;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1135,117,0 13 52952928 rs113543720 CA C 3778.73 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=25.71;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3816,441,0 13 52971893 rs3803264 G A 5686.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5715,575,0 13 53029770 rs72440971 CGCGGTGGCGGTGGCGGTG C 7637.73 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=44.15;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,173:173:99:7675,539,0 13 53035783 rs7337054 T C 3932.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3961,366,0 13 53035925 rs7335867 A G 3900.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3929,366,0 13 53217035 rs9536211 C A 5728.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.23;QD=30.64;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5757,561,0 13 53217270 rs9536212 A G 8969.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.48;QD=30.72;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8998,876,0 13 53254296 rs7986540 A G 3520.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.53;SOR=1.796 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3549,315,0 13 53287023 rs2147692 G C 2319.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=1.778 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2348,216,0 13 53421432 rs3742300 C A 3151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-0.7;SOR=0.767 GT:AD:DP:GQ:PL 0/1:172,135:307:99:3180,0,4463 13 53422553 rs3742301 A G 3057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=0.013;SOR=0.781 GT:AD:DP:GQ:PL 0/1:99,115:214:99:3086,0,2501 13 53617309 rs34067666 C T 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.834;SOR=0.626 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1307,0,1221 13 57722079 rs140840239 ACTC A 277.77 PASS AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=23;QD=39.68;SOR=4.174 GT:AD:DP:GQ:PL 1/1:0,7:7:21:315,21,0 13 58299434 rs5803842 G GA 530.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.087;QD=6.72;ReadPosRankSum=0.273;SOR=0.759 GT:AD:DP:GQ:PL 0/1:50,29:94:99:568,0,1013 13 60385060 rs10665848 A ATTAC 6486.73 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.74;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,145:145:99:6524,436,0 13 60590299 rs2762134 C T 1842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.9;ReadPosRankSum=1.083;SOR=0.664 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,48:74:99:0|1:60590299_C_T:1871,0,1393 13 61102575 rs148917045 GATA G 2967.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.67;ReadPosRankSum=-2.141;SOR=0.582 GT:AD:DP:GQ:PL 0/1:90,78:168:99:3005,0,3611 13 61986918 rs3812872 C A 2070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.195;SOR=0.66 GT:AD:DP:GQ:PL 0/1:78,89:167:99:2099,0,1856 13 61988107 rs4281600 T G 3548.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=2.079 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3577,332,0 13 67800419 rs41283952 C G 4162.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.78;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4191,380,0 13 67801532 rs45527937 A G 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=1.479;SOR=0.62 GT:AD:DP:GQ:PL 0/1:60,74:134:99:1914,0,1368 13 67802339 rs8000556 A T 4501.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4530,452,0 13 70293715 rs11336815 TA T 402.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.36;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.74;ReadPosRankSum=-0.048;SOR=0.718 GT:AD:DP:GQ:PL 0/1:32,20:52:99:440,0,859 13 70549942 rs144583054 CCA C 71.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.368;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.48;ReadPosRankSum=-1.45;SOR=1.095 GT:AD:DP:GQ:PL 0/1:131,17:150:99:109,0,4222 13 72440658 rs5804590 TGCCGCC T 12228.7 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=43.99;SOR=1.4 GT:AD:DP:GQ:PL 1/1:0,278:292:99:12266,839,0 13 73293249 . C CA 242.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0;DP=77;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.33;ReadPosRankSum=1.081;SOR=0.862 GT:AD:DP:GQ:PL 0/1:40,16:67:99:280,0,756 13 73301655 rs1465897 A C 4008.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4037,413,0 13 73301728 rs1465896 T C 4014.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=1.277 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4043,393,0 13 73302157 rs11350390 CT C 7187.73 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=35.41;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,203:203:99:7225,611,0 13 73319236 rs9543107 C T 2417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.897;QD=12.66;ReadPosRankSum=1.161;SOR=0.656 GT:AD:DP:GQ:PL 0/1:84,107:191:99:2446,0,1810 13 74339104 rs3764134 G T 468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.507;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.7;ReadPosRankSum=1.666;SOR=0.693 GT:AD:DP:GQ:PL 0/1:46,24:70:99:497,0,1119 13 75876389 rs2297208 G A 4686.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4715,456,0 13 75884216 rs1062087 C T 6255.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6284,660,0 13 75884290 rs2297203 G A 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=12.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-0.487;SOR=1.711 GT:AD:DP:GQ:PL 0/1:75,46:121:99:1053,0,1964 13 75915250 rs35018625 T TA 1908.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.9;ReadPosRankSum=0.421;SOR=0.567 GT:AD:DP:GQ:PL 0/1:42,59:101:99:1946,0,1266 13 75936519 rs7983969 C G 12084.8 PASS AC=2;AF=1;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,401:401:99:12113,1202,0 13 75936636 rs17254379 G A 2966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=1.204;SOR=0.517 GT:AD:DP:GQ:PL 0/1:160,132:292:99:2995,0,3915 13 76055602 rs77685055 G A 4450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-1.929;SOR=0.579 GT:AD:DP:GQ:PL 0/1:170,190:360:99:4479,0,4091 13 76140814 rs56945758 CT C 1228.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=19.82;ReadPosRankSum=1.713;SOR=0.631 GT:AD:DP:GQ:PL 1/1:6,56:65:45:1266,45,0 13 76397731 rs4884021 G A 2564.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=1.666 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2593,252,0 13 76419522 rs35634098 G A 1378.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1407,150,0 13 76423248 rs7986131 T C 2729.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.12;SOR=1.824 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2758,240,0 13 76427347 rs7988661 C A 4501.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4530,450,0 13 76427403 rs71434812 G A 7376.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.17;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,167:167:99:1|1:76427403_G_A:7405,512,0 13 76427410 rs7988841 C G 7349.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.01;SOR=0.729 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,167:167:99:1|1:76427403_G_A:7378,509,0 13 76445316 rs9600567 C T 2943.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2972,306,0 13 76457183 rs9530477 T C 2120.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2149,231,0 13 77522725 rs67524409 GACTT G 1182.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.2;ReadPosRankSum=0.884;SOR=0.671 GT:AD:DP:GQ:PL 0/1:41,32:73:99:1220,0,2139 13 77527764 rs17385627 T A 674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.13;ReadPosRankSum=0.665;SOR=0.677 GT:AD:DP:GQ:PL 0/1:70,40:110:99:703,0,1627 13 77566090 rs77416795 C T 1984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.236;SOR=0.592 GT:AD:DP:GQ:PL 0/1:66,82:148:99:2013,0,1717 13 77589725 rs599115 A C 730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.83;ReadPosRankSum=0.128;SOR=0.534 GT:AD:DP:GQ:PL 0/1:71,36:107:99:759,0,1843 13 77632470 rs2285386 C T 2169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.417;SOR=0.674 GT:AD:DP:GQ:PL 0/1:100,97:197:99:2198,0,2327 13 77750765 rs71102724 TA T 38.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.45;ReadPosRankSum=-0.169;SOR=0.685 GT:AD:DP:GQ:PL 0/1:72,15:97:76:76,0,1770 13 77751892 rs4885445 C T 2091.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2120,209,0 13 77754330 rs61749892 C T 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.366;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.1;ReadPosRankSum=0.658;SOR=0.789 GT:AD:DP:GQ:PL 0/1:101,51:152:99:1107,0,2520 13 77818100 rs35429706 C CA 623.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.719;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=0.755;QD=14.18;ReadPosRankSum=1.538;SOR=0.22 GT:AD:DP:GQ:PL 0/1:13,31:63:99:661,0,178 13 77835520 rs11436373 T TA 1032.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=5.084;MLEAC=2;MLEAF=1;MQ=60.34;MQRankSum=0.369;QD=22.95;ReadPosRankSum=1.182;SOR=2.11 GT:AD:DP:GQ:PL 1/1:4,41:50:53:1070,53,0 13 78146301 rs678047 C T 3162.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3191,321,0 13 78192207 rs9574090 T C 1952.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1981,204,0 13 78216873 rs1053985 A G 2109.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.49;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2138,189,0 13 78272267 rs201380414 T TGG 2186.73 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=47.54;SOR=0.874 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,46:46:99:1|1:78272267_T_TGG:2224,150,0 13 78272276 rs71102772 G GC 2155.73 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.11;SOR=1.051 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,50:50:99:1|1:78272267_T_TGG:2193,151,0 13 78477674 rs5348 A G 4000.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4029,417,0 13 79894736 rs3187338 C T 709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=-2.184;SOR=0.509 GT:AD:DP:GQ:PL 0/1:47,32:79:99:738,0,1321 13 79916792 rs79278660 T TA 2362.73 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=31.93;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2400,223,0 13 79916973 rs3742118 A T 581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=8.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=1.926;SOR=1.877 GT:AD:DP:GQ:PL 0/1:26,24:50:99:610,0,665 13 79940811 rs7327603 T C 1675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.583;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=18.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-1.272;SOR=0.139 GT:AD:DP:GQ:PL 0/1:71,69:140:99:1704,0,1634 13 79946071 rs369797909 TA T 291.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.028;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=4.047;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=0.966;QD=6.48;ReadPosRankSum=0.616;SOR=1.341 GT:AD:DP:GQ:PL 0/1:25,20:54:99:329,0,534 13 80095030 rs11549502 C T 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.417;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.528;SOR=0.833 GT:AD:DP:GQ:PL 0/1:89,93:182:99:2209,0,2066 13 80911525 rs504122 G A 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.741;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.109;SOR=0.724 GT:AD:DP:GQ:PL 0/1:120,93:213:99:2314,0,3037 13 86369120 rs3825413 C T 4154.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4183,413,0 13 95097956 rs755684 C T 1874.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1903,200,0 13 95364046 rs1060474 C G 8887.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8916,840,0 13 95673939 rs9524765 A G 2226.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2255,235,0 13 95714976 rs1751034 C T 4676.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4705,464,0 13 95726541 rs1189466 A G 4414.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4443,441,0 13 95727780 rs1678339 T C 5243.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5272,539,0 13 95858978 rs2274405 T C 4369.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4398,427,0 13 95858996 rs2274406 T C 4270.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4299,420,0 13 95861804 rs899494 A G 5771.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5800,619,0 13 95899354 rs4148437 A G 1135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=0.16;SOR=0.643 GT:AD:DP:GQ:PL 0/1:67,54:121:99:1164,0,1544 13 96540141 rs9525075 T C 3824.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,85:85:99:1|1:96540141_T_C:3853,259,0 13 96540143 rs9525076 T C 3824.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.47;SOR=0.74 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,86:86:99:1|1:96540141_T_C:3853,259,0 13 96579462 rs9525086 T C 1347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.691;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=0.128;SOR=0.57 GT:AD:DP:GQ:PL 0/1:40,47:87:99:1376,0,1081 13 96638636 rs816142 A C 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.072;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=5.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=1.401;SOR=1.105 GT:AD:DP:GQ:PL 0/1:50,40:90:99:982,0,1214 13 97639414 rs9284174 C T 1588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.781;SOR=0.785 GT:AD:DP:GQ:PL 0/1:65,66:131:99:1617,0,1711 13 98829176 rs628778 T C 9514.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9543,948,0 13 98896776 rs7318267 C T 2079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.08;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-1.049;SOR=0.596 GT:AD:DP:GQ:PL 0/1:76,85:161:99:2108,0,1899 13 99038087 rs584800 C T 943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=-0.512;SOR=0.936 GT:AD:DP:GQ:PL 0/1:61,44:105:99:972,0,1503 13 99042390 rs2256823 T C 1319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=0.786;SOR=0.674 GT:AD:DP:GQ:PL 0/1:75,58:133:99:1348,0,1825 13 99093094 rs2146998 T C 4066.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4095,402,0 13 99098470 rs2274054 C T 1874.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1903,186,0 13 99100547 rs12261 T C 3454.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3483,351,0 13 99112680 rs4771305 C T 2951.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2980,309,0 13 99115927 rs2296149 A G 7791.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7820,779,0 13 99127252 rs9513430 C G 2161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.423;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.523;SOR=0.597 GT:AD:DP:GQ:PL 0/1:91,88:179:99:2190,0,2120 13 99127496 rs2274055 C T 740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-0.596;SOR=0.563 GT:AD:DP:GQ:PL 0/1:36,33:69:99:769,0,873 13 99447005 rs812808 T C 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.467;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=0.037;SOR=0.775 GT:AD:DP:GQ:PL 0/1:66,72:138:99:1832,0,1495 13 99449755 rs1289315 G A 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.949;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.21;ReadPosRankSum=-0.792;SOR=0.512 GT:AD:DP:GQ:PL 0/1:30,50:80:99:1325,0,651 13 99482030 rs9517459 G C 854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.235;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-2.59;SOR=0.651 GT:AD:DP:GQ:PL 0/1:55,35:90:99:883,0,1413 13 99537217 rs2274642 G T 3422.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3451,330,0 13 99540395 rs1928104 A G 2808.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2837,276,0 13 99566595 . G A 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.231;SOR=0.621 GT:AD:DP:GQ:PL 0/1:55,63:118:99:1547,0,1175 13 99575568 rs12428661 G A 638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.728;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=-0.224;SOR=0.616 GT:AD:DP:GQ:PL 0/1:47,27:74:99:667,0,1215 13 100518580 rs3783185 A G 1507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-1.14;SOR=0.753 GT:AD:DP:GQ:PL 0/1:67,67:134:99:1536,0,1617 13 100888122 rs538229 A G 244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.487;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=3.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.8;ReadPosRankSum=-1.529;SOR=1.609 GT:AD:DP:GQ:PL 0/1:26,10:36:99:273,0,675 13 100921056 rs4306370 A G 1515.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1544,153,0 13 100962156 rs35719359 A G 676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.239;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.024;SOR=1.028 GT:AD:DP:GQ:PL 0/1:29,29:58:99:705,0,701 13 101287340 rs946837 C T 2708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=1.589;SOR=0.635 GT:AD:DP:GQ:PL 0/1:165,122:287:99:2737,0,4035 13 101287365 rs946838 T C 8057.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8086,851,0 13 101288992 rs3803256 C T 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.46;SOR=0.749 GT:AD:DP:GQ:PL 0/1:56,55:111:99:1410,0,1459 13 101321067 rs2791680 T C 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=1.194;SOR=0.731 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1136,0,1398 13 101322622 rs1283201 G C 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-0.424;SOR=0.716 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1190,0,1869 13 101720300 rs1289556 T G 1560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=-0.3;SOR=0.674 GT:AD:DP:GQ:PL 0/1:40,68:108:99:1589,0,817 13 101735211 rs17677552 G A 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=3.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=-0.554;SOR=0.449 GT:AD:DP:GQ:PL 0/1:84,63:147:99:1389,0,1956 13 101736075 rs686141 A G 5017.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5046,525,0 13 102106276 rs2297700 G C 2241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.987;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=3.089;SOR=0.566 GT:AD:DP:GQ:PL 0/1:123,94:217:99:2270,0,2960 13 102227872 rs3916912 C T 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.399;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=1.667;SOR=0.715 GT:AD:DP:GQ:PL 0/1:59,35:94:99:823,0,1432 13 102366825 rs2281991 A G 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.066;SOR=0.773 GT:AD:DP:GQ:PL 0/1:54,52:106:99:1195,0,1231 13 103343230 rs149948690 C G 2284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.871;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.093;SOR=0.674 GT:AD:DP:GQ:PL 0/1:109,99:208:99:2313,0,2517 13 103383417 rs9554897 T C 2230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.132;SOR=1.053 GT:AD:DP:GQ:PL 0/1:83,92:175:99:2259,0,2145 13 103384824 rs9300756 G A 1615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.492;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.015;SOR=0.805 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1644,0,1754 13 103385015 rs6491707 A G 5083.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5112,499,0 13 103385299 rs7335290 A C 5181.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5210,486,0 13 103385798 rs7983175 T C 4705.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=3.04;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.01;ReadPosRankSum=-0.557;SOR=0.267 GT:AD:DP:GQ:PL 1/1:1,146:147:99:4734,400,0 13 103386116 rs7982465 C G 5681.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5710,530,0 13 103386283 rs7982670 A G 4476.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4505,417,0 13 103388220 rs9300758 A G 5610.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5639,528,0 13 103391634 rs7322112 C T 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=1.364;SOR=0.94 GT:AD:DP:GQ:PL 0/1:67,46:113:99:1050,0,1834 13 103394003 rs1449707 G A 2319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.68;ReadPosRankSum=0.407;SOR=0.723 GT:AD:DP:GQ:PL 0/1:63,95:158:99:2348,0,1558 13 103394613 rs9585986 T G 1975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=-1.147;SOR=0.844 GT:AD:DP:GQ:PL 0/1:54,83:137:99:2004,0,1212 13 103394716 rs9585987 T C 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=6.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=0.261;SOR=0.784 GT:AD:DP:GQ:PL 0/1:58,66:124:99:1707,0,1363 13 103395819 rs1375720 C T 2796.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2825,264,0 13 103396716 rs6491708 C G 1731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.39;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.43;ReadPosRankSum=-0.136;SOR=0.745 GT:AD:DP:GQ:PL 0/1:58,62:120:99:1760,0,1651 13 103397583 rs9582626 C G 1597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.196;SOR=0.809 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1626,0,2042 13 103397937 rs9300759 T G 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.037;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.408;SOR=0.521 GT:AD:DP:GQ:PL 0/1:72,80:152:99:2107,0,1764 13 103400083 rs1026158 G A 1707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.057;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-1.664;SOR=0.613 GT:AD:DP:GQ:PL 0/1:102,74:176:99:1736,0,2617 13 103400729 rs12583104 G A 1932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.188;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.215;SOR=0.72 GT:AD:DP:GQ:PL 0/1:88,83:171:99:1961,0,2092 13 103402522 rs9300760 C T 1099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-1.211;SOR=0.636 GT:AD:DP:GQ:PL 0/1:66,49:115:99:1128,0,1672 13 103410782 rs1375719 T C 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.424;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.182;SOR=0.629 GT:AD:DP:GQ:PL 0/1:40,30:70:99:682,0,950 13 103410914 rs12855785 A T 842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.571;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.787;SOR=0.773 GT:AD:DP:GQ:PL 0/1:40,33:73:99:871,0,998 13 103420671 rs5806323 T TA 483.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=1.13;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.93;ReadPosRankSum=-0.238;SOR=0.96 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,16:61:99:0|1:103420671_T_TA:521,0,2340 13 103420680 rs1470654 C A 492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.21;ReadPosRankSum=-0.299;SOR=0.846 GT:AD:DP:GQ:PGT:PID:PL 0/1:45,15:60:99:0|1:103420671_T_TA:521,0,2340 13 103449202 rs1047740 T C 701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.338;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=5.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.455;SOR=1.469 GT:AD:DP:GQ:PL 0/1:39,25:64:99:730,0,931 13 103473497 rs9557936 T G 1271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.996;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=1.465;SOR=0.555 GT:AD:DP:GQ:PL 0/1:48,53:101:99:1300,0,1083 13 103484060 rs2181676 G A 4260.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.464 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4289,426,0 13 103527849 rs9514066 G C 8366.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8395,842,0 13 103527930 rs9514067 G C 8844.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8873,836,0 13 103528002 rs17655 G C 3682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=-0.043;SOR=0.511 GT:AD:DP:GQ:PL 0/1:121,139:260:99:3711,0,3026 13 103698630 rs279940 C T 1807.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.467 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1836,189,0 13 103705044 rs188096 A C 2535.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2564,255,0 13 106119446 rs2391191 G A 3092.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3121,306,0 13 107145463 rs7995379 G C 8617.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8646,821,0 13 107209378 rs9587157 T C 757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=-2.289;SOR=0.758 GT:AD:DP:GQ:PL 0/1:46,39:85:99:786,0,1065 13 109459020 rs9301323 G A 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.449;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=4.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-0.129;SOR=1.046 GT:AD:DP:GQ:PL 0/1:81,61:142:99:1480,0,1875 13 109779906 rs3815983 C T 1963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-2.326;SOR=0.839 GT:AD:DP:GQ:PL 0/1:93,81:174:99:1992,0,2568 13 109793246 rs80260507 G C 2385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=6.318;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=1.488;SOR=0.574 GT:AD:DP:GQ:PL 0/1:128,102:230:99:2414,0,3308 13 109793474 rs28705148 T C 7173.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7202,689,0 13 109793720 rs7986595 A C 4105.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=1.882 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4134,387,0 13 110435231 rs1805097 C T 4533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.847;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=-0.13;SOR=0.653 GT:AD:DP:GQ:PL 0/1:125,185:310:99:4562,0,3268 13 110435302 rs9583424 T C 3255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.669;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=5.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=1.966;SOR=0.902 GT:AD:DP:GQ:PL 0/1:165,139:304:99:3284,0,3979 13 110435953 rs4773092 A G 11747.8 PASS AC=2;AF=1;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,370:370:99:11776,1109,0 13 110436232 rs3742210 G A 15068.8 PASS AC=2;AF=1;AN=2;DB;DP=497;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,495:495:99:15097,1483,0 13 110813523 rs2275842 C T 1669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.37;ReadPosRankSum=0.874;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,44:102:99:0|1:110813523_C_T:1698,0,3680 13 110813532 rs2275843 G A 1725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.796;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.83;ReadPosRankSum=0.027;SOR=0.749 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,47:109:99:0|1:110813523_C_T:1754,0,3674 13 110818598 rs3742207 T G 979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.157;SOR=0.736 GT:AD:DP:GQ:PL 0/1:43,48:91:99:1008,0,885 13 110819586 rs589985 G A 956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-1.332;SOR=0.795 GT:AD:DP:GQ:PL 0/1:39,44:83:99:985,0,962 13 110827574 rs874203 T A 2622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.511;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=5.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.783;SOR=1.059 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,72:206:99:0|1:110827574_T_A:2651,0,7397 13 110827580 rs874204 C T 2607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.068;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=8.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=1.224;SOR=1.194 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,74:217:99:0|1:110827574_T_A:2636,0,7516 13 110833702 rs16975492 C T 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.062;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.498;SOR=0.693 GT:AD:DP:GQ:PL 0/1:93,74:167:99:1683,0,2028 13 110839550 rs536174 T G 7192.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7221,693,0 13 110857823 rs482757 C T 4633.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4662,465,0 13 110857895 rs677877 A G 3113.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.22;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3142,273,0 13 110859743 rs598893 C T 1756.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.62;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1785,197,0 13 110861785 rs645114 C G 1054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=0.332;SOR=0.454 GT:AD:DP:GQ:PL 0/1:48,45:93:99:1083,0,1202 13 110864225 rs532625 A T 1696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-1.65;SOR=0.744 GT:AD:DP:GQ:PL 0/1:74,76:150:99:1725,0,1666 13 110866265 rs9521650 G A 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.427;SOR=0.785 GT:AD:DP:GQ:PL 0/1:69,65:134:99:1350,0,1636 13 110959356 rs9515185 C G 2109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.444;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.179;SOR=0.842 GT:AD:DP:GQ:PL 0/1:110,96:206:99:2138,0,2403 13 111077197 rs4238272 G A 4827.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4856,465,0 13 111098226 rs4103 C T 2126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.359;SOR=0.748 GT:AD:DP:GQ:PL 0/1:110,103:213:99:2155,0,2425 13 111102042 rs76425569 G A 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=2.663;SOR=0.655 GT:AD:DP:GQ:PL 0/1:105,96:201:99:2059,0,2420 13 111102126 rs74941798 C T 2602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.405;SOR=0.683 GT:AD:DP:GQ:PL 0/1:102,123:225:99:2631,0,2232 13 111111173 rs7990214 G A 2446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=4.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=-1.873;SOR=0.778 GT:AD:DP:GQ:PL 0/1:148,113:261:99:2475,0,3570 13 111111235 rs7990383 G A 2389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=1.243;SOR=0.645 GT:AD:DP:GQ:PL 0/1:147,110:257:99:2418,0,3542 13 111117745 rs3803236 C T 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.863;SOR=0.857 GT:AD:DP:GQ:PL 0/1:72,65:137:99:1616,0,1990 13 111121620 rs9583500 C T 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.26;ReadPosRankSum=-1.353;SOR=0.761 GT:AD:DP:GQ:PL 0/1:164,103:267:99:2233,0,4119 13 111154058 rs439831 T A 9676.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.65;SOR=0.833 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,212:212:99:1|1:111154058_T_A:9705,656,0 13 111154061 rs409858 T C 9676.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=0.84 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,217:217:99:1|1:111154058_T_A:9705,656,0 13 111155711 rs4773198 C T 1769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.81;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=0.408;SOR=0.884 GT:AD:DP:GQ:PL 0/1:85,72:157:99:1798,0,2178 13 111155773 rs438758 T C 5736.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.77;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5765,472,0 13 111155779 rs4773199 G A 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-1.841;SOR=0.898 GT:AD:DP:GQ:PL 0/1:81,73:154:99:1679,0,1974 13 111156499 rs4771683 C T 3927.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3956,416,0 13 111158874 rs445348 A G 6849.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6878,710,0 13 111176393 rs419244 A G 3964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.47;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.537;SOR=0.804 GT:AD:DP:GQ:PL 0/1:149,161:310:99:3993,0,3616 13 111176519 rs375814 G T 2745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-1.538;SOR=0.565 GT:AD:DP:GQ:PL 0/1:147,125:272:99:2774,0,3830 13 111319754 rs4628819 T C 4031.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4060,393,0 13 111340342 rs2304767 G A 2193.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2222,231,0 13 111368164 rs7338333 T G 5370.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5399,534,0 13 111368316 rs9555726 C T 6765.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6794,691,0 13 111919882 rs117572629 C T 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.231;SOR=0.649 GT:AD:DP:GQ:PL 0/1:79,82:161:99:2037,0,2134 13 111932913 rs41275846 G A 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.426;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.745;SOR=0.63 GT:AD:DP:GQ:PL 0/1:96,84:180:99:1972,0,2276 13 111955465 rs1555751 T C 4127.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.02;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,125:125:99:4156,374,0 13 111980537 rs1359428 C T 721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.513;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.68;ReadPosRankSum=1.876;SOR=0.755 GT:AD:DP:GQ:PL 0/1:60,34:94:99:750,0,1477 13 111992247 rs35344026 C A 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.334;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=0.843;SOR=0.775 GT:AD:DP:GQ:PL 0/1:42,39:81:99:964,0,1213 13 111992288 rs2253707 C T 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.39;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=-0.248;SOR=0.58 GT:AD:DP:GQ:PL 0/1:33,25:58:99:567,0,733 13 113052388 rs2296895 A G 1034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=1.139;QD=12.47;ReadPosRankSum=0.684;SOR=0.625 GT:AD:DP:GQ:PL 0/1:37,46:83:99:1063,0,880 13 113053470 rs10816 T A 604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-1.808;SOR=0.693 GT:AD:DP:GQ:PL 0/1:28,28:56:99:633,0,621 13 113153269 rs117740561 A C 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-1.625;SOR=0.661 GT:AD:DP:GQ:PL 0/1:80,72:152:99:1809,0,1988 13 113333684 rs7338610 C T 3124.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3153,308,0 13 113439586 rs11616475 G T 4443.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4472,429,0 13 113473598 rs34166778 CAT C 1564.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=1.726;QD=19.08;ReadPosRankSum=-0.042;SOR=0.497 GT:AD:DP:GQ:PL 0/1:40,42:82:99:1602,0,1739 13 113478654 rs7323586 G C 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.541;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.934;SOR=1.029 GT:AD:DP:GQ:PL 0/1:52,44:96:99:1019,0,1229 13 113479813 rs9549564 G A 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.39;ReadPosRankSum=1.154;SOR=0.797 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,85:208:99:0|1:113479813_G_A:1773,0,3065 13 113479820 rs368865 A G 7409.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.031;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=35.12;ReadPosRankSum=-0.468;SOR=0.253 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,210:211:99:1|1:113479813_G_A:7438,594,0 13 113508839 rs9549573 G C 6747.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=30.53;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6776,663,0 13 113527967 rs1320525 G A 1509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=1.197;SOR=0.832 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1538,0,1879 13 113536132 rs1290177 T C 10884.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10913,1030,0 13 113622971 rs142817931 G A 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.815;SOR=0.577 GT:AD:DP:GQ:PL 0/1:120,98:218:99:2422,0,3093 13 113634091 rs6577024 G C 2251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.511;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=4.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.466;SOR=1.052 GT:AD:DP:GQ:PL 0/1:81,90:171:99:2280,0,1909 13 113656216 rs7986677 C T 6076.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.4;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6105,635,0 13 113720476 rs2297192 C T 2256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.57;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-1.048;SOR=0.628 GT:AD:DP:GQ:PL 0/1:93,85:178:99:2285,0,2313 13 113728781 rs3814264 G A 2439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.894;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.132;SOR=0.543 GT:AD:DP:GQ:PL 0/1:134,106:240:99:2468,0,3274 13 113729367 rs117508840 A G 2486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.532;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.421;SOR=0.726 GT:AD:DP:GQ:PL 0/1:129,111:240:99:2515,0,2913 13 113748957 rs188753593 C T 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=3.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=2.481;SOR=0.51 GT:AD:DP:GQ:PL 0/1:104,99:203:99:2035,0,2459 13 113792754 rs2251102 T C 396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.647;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.281;SOR=0.35 GT:AD:DP:GQ:PL 0/1:19,13:32:99:425,0,554 13 113801737 rs5960 C T 1174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.066;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.377;SOR=1.047 GT:AD:DP:GQ:PL 0/1:60,47:107:99:1203,0,1485 13 113812962 rs2273971 G A 2761.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2790,288,0 13 113818817 rs3024732 T TC 3498.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=44.86;SOR=1.234 GT:AD:DP:GQ:PL 1/1:0,78:103:99:3522,343,0 13 113818900 rs564081 A G 6324.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6353,644,0 13 113888201 rs2146408 T C 1524.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1553,153,0 13 113889474 rs2287250 C T 866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=-0.785;SOR=0.636 GT:AD:DP:GQ:PL 0/1:50,40:90:99:895,0,1246 13 113893729 rs3794422 G A 936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.445;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.36;ReadPosRankSum=0.359;SOR=0.871 GT:AD:DP:GQ:PL 0/1:25,36:61:99:965,0,599 13 113897320 rs3764124 C T 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=0.646;SOR=0.624 GT:AD:DP:GQ:PL 0/1:67,50:117:99:1053,0,1674 13 113907391 rs9549365 A G 598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.131;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.18;ReadPosRankSum=-0.534;SOR=0.394 GT:AD:DP:GQ:PL 0/1:15,22:37:99:627,0,357 13 113909339 rs2302757 A G 2369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=0.601;SOR=0.678 GT:AD:DP:GQ:PL 0/1:70,98:168:99:2398,0,1482 13 113965176 rs9577503 C A 3449.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3478,324,0 13 114057712 rs9603837 G A 2998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.343;SOR=0.685 GT:AD:DP:GQ:PL 0/1:109,134:243:99:3027,0,2582 13 114057822 rs9604099 G A 2655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.05;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.498;SOR=0.658 GT:AD:DP:GQ:PL 0/1:162,114:276:99:2684,0,3923 13 114058467 rs7991513 C T 476.77 SNP_QD_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.411;ClippingRankSum=0;DB;DP=579;ExcessHet=3.0103;FS=0.39;MLEAC=1;MLEAF=0.5;MQ=56.42;MQRankSum=3.918;QD=1.22;ReadPosRankSum=-10.751;SOR=0.733 GT:AD:DP:GQ:PL 0/1:265,127:392:99:505,0,5442 13 114058852 rs185241466 C T 3578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.998;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=1.256;QD=10;ReadPosRankSum=1.427;SOR=0.836 GT:AD:DP:GQ:PL 0/1:201,157:358:99:3607,0,7096 13 114058884 rs7334623 T C 4807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.931;QD=13.21;ReadPosRankSum=-0.462;SOR=0.676 GT:AD:DP:GQ:PL 0/1:170,194:364:99:4836,0,5991 13 114060985 rs35896628 C CAAG 5655.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.486;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.611;QD=21.18;ReadPosRankSum=-0.014;SOR=0.781 GT:AD:DP:GQ:PL 0/1:123,144:267:99:5693,0,5140 13 114083421 rs148154052 A AAG 3249.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=5.257;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=2.41;QD=17.1;ReadPosRankSum=1.352;SOR=0.415 GT:AD:DP:GQ:PL 0/1:92,98:190:99:3287,0,3115 13 114112389 rs41286638 T C 1371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=1.083;SOR=0.604 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1400,0,1166 13 114113737 rs202245499 GA G 219.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.32;ReadPosRankSum=1.113;SOR=0.223 GT:AD:DP:GQ:PL 0/1:16,14:32:99:257,0,377 13 114149891 rs2261241 T C 1377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.131;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=0.43;SOR=0.886 GT:AD:DP:GQ:PL 0/1:49,55:104:99:1406,0,1132 13 114150358 rs2261237 A G 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.267;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=0.252;SOR=0.681 GT:AD:DP:GQ:PL 0/1:25,37:62:99:924,0,600 13 114152755 rs2260218 C T 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.17;SOR=0.597 GT:AD:DP:GQ:PL 0/1:57,64:121:99:1361,0,1252 13 114154419 rs2260159 G A 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-1.716;SOR=0.86 GT:AD:DP:GQ:PL 0/1:64,54:118:99:1260,0,1646 13 114156093 rs2260080 C T 2275.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2304,231,0 13 114175004 rs2260334 C T 3883.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3912,423,0 13 114175032 rs2260335 G A 1355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.968;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-1.436;SOR=0.854 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1384,0,1189 13 114309226 rs11164142 G A 2898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.446;SOR=0.617 GT:AD:DP:GQ:PL 0/1:141,137:278:99:2927,0,3340 13 114312354 rs9285616 T G 4096.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4125,420,0 13 114322289 rs9796035 A G 8465.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8494,834,0 13 114323997 rs9796234 T C 2247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.74;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.29;ReadPosRankSum=0.744;SOR=0.732 GT:AD:DP:GQ:PL 0/1:67,80:147:99:2276,0,1492 13 114503875 rs66696122 GCCTGCGGGAGGTGAGGGGCACCGGGGACCCCCATATCTACACCTGCGGGAGGTGAGGGGCGCTGGGGACCCCCGTATCTACA G 906.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.982;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=6.674;MLEAC=1;MLEAF=0.5;MQ=59.44;MQRankSum=-0.954;QD=6.72;ReadPosRankSum=-1.569;SOR=0.798 GT:AD:DP:GQ:PL 0/1:105,30:135:99:944,0,4308 13 114507840 rs7332019 G A 1610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.701;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.66;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=-2.37;QD=12.2;ReadPosRankSum=-1.256;SOR=0.779 GT:AD:DP:GQ:PL 0/1:63,69:132:99:1639,0,1478 14 19377859 rs150290074 T C 78.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.069;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=4.766;MLEAC=1;MLEAF=0.5;MQ=36.61;MQRankSum=-3.438;QD=0.51;ReadPosRankSum=-2.11;SOR=1.307 GT:AD:DP:GQ:PL 0/1:134,20:154:99:107,0,3691 14 19377907 rs367996724 A C 403.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.124;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=64.152;MLEAC=1;MLEAF=0.5;MQ=30.72;MQRankSum=-9.613;QD=2.48;ReadPosRankSum=-0.17;SOR=6.419 GT:AD:DP:GQ:PL 0/1:131,32:163:99:432,0,3384 14 19378030 rs138051664 T A 5211.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.594;ClippingRankSum=0;DB;DP=543;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.5;MQ=39.38;MQRankSum=-1.321;QD=9.6;ReadPosRankSum=-2.154;SOR=0.92 GT:AD:DP:GQ:PL 0/1:290,253:543:99:5240,0,6637 14 19378189 rs201806505 G T 2528.77 SNP_FS_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.966;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=60.274;MLEAC=1;MLEAF=0.5;MQ=31.76;MQRankSum=-3.621;QD=7.55;ReadPosRankSum=-1.299;SOR=2.578 GT:AD:DP:GQ:PL 0/1:212,123:335:99:2557,0,5285 14 19378312 rs201880193 T G 1843.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.755;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=6.713;MLEAC=1;MLEAF=0.5;MQ=34.03;MQRankSum=-3.424;QD=6.36;ReadPosRankSum=1.061;SOR=0.859 GT:AD:DP:GQ:PL 0/1:193,97:290:99:1872,0,4458 14 19553436 rs201747513 C T 3737.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.683;ClippingRankSum=0;DB;DP=634;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.5;MQ=31.49;MQRankSum=-2.309;QD=5.9;ReadPosRankSum=-1.367;SOR=0.453 GT:AD:DP:GQ:PGT:PID:PL 0/1:507,126:633:99:0|1:19553436_C_T:3766,0,23807 14 19553443 rs202218898 G A 3929.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.836;ClippingRankSum=0;DB;DP=735;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.5;MQ=31.87;MQRankSum=-2.911;QD=5.35;ReadPosRankSum=-0.762;SOR=0.476 GT:AD:DP:GQ:PGT:PID:PL 0/1:589,145:734:99:0|1:19553436_C_T:3958,0,24936 14 19553642 rs201268355 A G 3076.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.16;ClippingRankSum=0;DB;DP=1317;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.5;MQ=50.68;MQRankSum=-23.765;QD=2.38;ReadPosRankSum=-6.917;SOR=0.535 GT:AD:DP:GQ:PL 0/1:1066,226:1292:99:3105,0,23176 14 19553764 rs77983807 A G 7901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=2217;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.5;MQ=41.88;MQRankSum=-10.438;QD=3.58;ReadPosRankSum=4.215;SOR=0.811 GT:AD:DP:GQ:PL 0/1:1662,543:2212:99:7930,0,39007 14 19553845 rs145769706 C A 5947.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.873;ClippingRankSum=0;DB;DP=1426;ExcessHet=3.0103;FS=2.121;MLEAC=1;MLEAF=0.5;MQ=37;MQRankSum=-7.776;QD=4.17;ReadPosRankSum=1.103;SOR=0.537 GT:AD:DP:GQ:PL 0/1:1052,374:1426:99:5976,0,41972 14 19553852 rs138358738 G A 11939.8 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.309;ClippingRankSum=0;DB;DP=1342;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.5;MQ=36.55;MQRankSum=-7.755;QD=8.9;ReadPosRankSum=1.335;SOR=0.535 GT:AD:DP:GQ:PL 0/1:988,354:1342:99:11968,0,25610 14 19561978 rs199584792 T C 1075.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.4;QD=35.86;SOR=6.869 GT:AD:DP:GQ:PL 1/1:0,30:30:90:1104,90,0 14 19566036 rs77791636 C T 505.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0;DB;DP=431;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=41.98;MQRankSum=-5.93;QD=1.17;ReadPosRankSum=-0.257;SOR=0.826 GT:AD:DP:GQ:PL 0/1:362,69:431:99:534,0,8269 14 19990641 rs138327719 C T 80.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.947;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25;MQRankSum=0;QD=1.88;ReadPosRankSum=-1.61;SOR=0.061 GT:AD:DP:GQ:PL 0/1:35,8:43:99:109,0,912 14 20010235 rs199713004 A G 165.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.94;QD=23.69;SOR=4.174 GT:AD:DP:GQ:PL 1/1:0,7:7:21:194,21,0 14 20019785 rs200978838 C T 133.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.9;ClippingRankSum=0;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.58;MQRankSum=1.203;QD=6.37;ReadPosRankSum=0.57;SOR=0.117 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,5:21:99:0|1:20019785_C_T:162,0,635 14 20019792 rs377394087 G T 136.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.461;ClippingRankSum=0;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.56;MQRankSum=1.315;QD=6.84;ReadPosRankSum=0.718;SOR=0.132 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,5:20:99:0|1:20019785_C_T:165,0,608 14 20019864 . G A 507.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.347;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=6.601;MLEAC=1;MLEAF=0.5;MQ=30.56;MQRankSum=-3.516;QD=15.87;ReadPosRankSum=0.807;SOR=4.029 GT:AD:DP:GQ:PL 0/1:7,25:32:99:536,0,241 14 20019873 . T C 557.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=24.056;MLEAC=1;MLEAF=0.5;MQ=36.87;MQRankSum=-0.598;QD=5.52;ReadPosRankSum=-1.713;SOR=0.062 GT:AD:DP:GQ:PL 0/1:66,35:101:99:586,0,1902 14 20020071 rs201460508 A G 2624.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=11.809;MLEAC=2;MLEAF=1;MQ=28.29;MQRankSum=-1.761;QD=28.84;ReadPosRankSum=-0.834;SOR=5.326 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2653,232,0 14 20020194 rs202067492 C T 424.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.314;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.69;MQRankSum=-0.448;QD=14.65;ReadPosRankSum=-0.295;SOR=0.42 GT:AD:DP:GQ:PGT:PID:PL 0/1:17,12:29:99:0|1:20020194_C_T:453,0,678 14 20020201 rs201262647 G A 424.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.656;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.69;MQRankSum=-0.448;QD=14.65;ReadPosRankSum=-1.44;SOR=0.42 GT:AD:DP:GQ:PGT:PID:PL 0/1:17,12:29:99:0|1:20020194_C_T:453,0,678 14 20215899 rs149431544 C A 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=57.51;MQRankSum=0.457;QD=6.8;ReadPosRankSum=-1.173;SOR=0.638 GT:AD:DP:GQ:PL 0/1:146,76:222:99:1537,0,3749 14 20216298 rs12896533 T C 3732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.247;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-1.468;QD=16.89;ReadPosRankSum=0.65;SOR=0.699 GT:AD:DP:GQ:PL 0/1:77,144:221:99:3761,0,1531 14 20248828 rs2635535 C T 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.38;ReadPosRankSum=-0.21;SOR=0.67 GT:AD:DP:GQ:PL 0/1:256,122:378:99:2439,0,6542 14 20249176 rs2815960 G A 1831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=2.847;MLEAC=1;MLEAF=0.5;MQ=59.69;MQRankSum=-0.756;QD=6.36;ReadPosRankSum=0.348;SOR=0.887 GT:AD:DP:GQ:PL 0/1:203,85:288:99:1860,0,5566 14 20295763 rs11621854 C T 1564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.06;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.85;QD=5.13;ReadPosRankSum=0.819;SOR=0.577 GT:AD:DP:GQ:PL 0/1:225,80:305:99:1593,0,5943 14 20295834 rs2801164 T C 5539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.814;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=4.279;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=1.52;QD=16.29;ReadPosRankSum=1.689;SOR=0.514 GT:AD:DP:GQ:PL 0/1:130,210:340:99:5568,0,3019 14 20296004 rs2318279 C T 3019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.303;ClippingRankSum=0;DB;DP=412;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=-3.027;QD=7.33;ReadPosRankSum=-0.217;SOR=0.628 GT:AD:DP:GQ:PL 0/1:272,140:412:99:3048,0,7469 14 20296510 rs10149365 G A 1208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.24;ReadPosRankSum=-0.299;SOR=0.525 GT:AD:DP:GQ:PL 0/1:107,60:167:99:1237,0,2605 14 20296551 . A AAG 1076.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-1.273;QD=10.56;ReadPosRankSum=0.153;SOR=0.764 GT:AD:DP:GQ:PL 0/1:70,32:112:99:1114,0,2642 14 20345346 rs12883767 A T 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.055;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.44;ReadPosRankSum=-2.251;SOR=0.944 GT:AD:DP:GQ:PL 0/1:45,68:113:99:1773,0,1003 14 20404091 rs12885778 G A 3503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.128;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=5.171;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=-0.012;SOR=0.841 GT:AD:DP:GQ:PL 0/1:107,140:247:99:3532,0,2398 14 20404614 rs34608158 C A 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.72;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.55;ReadPosRankSum=-1.17;SOR=0.82 GT:AD:DP:GQ:PL 0/1:146,80:226:99:1734,0,3989 14 20404735 rs34394400 C T 2695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.581;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.14;ReadPosRankSum=1.689;SOR=0.504 GT:AD:DP:GQ:PL 0/1:77,101:178:99:2724,0,1775 14 20443872 rs4499148 C G 1876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.63;MQRankSum=-3.397;QD=10.6;ReadPosRankSum=0.241;SOR=0.724 GT:AD:DP:GQ:PL 0/1:99,78:177:99:1905,0,2439 14 20443943 rs4060024 A G 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.663;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.5;MQ=53.47;MQRankSum=-3.845;QD=11.66;ReadPosRankSum=-0.658;SOR=0.501 GT:AD:DP:GQ:PL 0/1:80,65:145:99:1719,0,1957 14 20444012 rs3861512 A T 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=7.198;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=-0.43;QD=12.09;ReadPosRankSum=-0.936;SOR=0.979 GT:AD:DP:GQ:PL 0/1:75,74:149:99:1830,0,1769 14 20444026 rs3861513 T G 2043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.613;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.871;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=-0.48;QD=13.81;ReadPosRankSum=-0.245;SOR=0.935 GT:AD:DP:GQ:PL 0/1:70,78:148:99:2072,0,1573 14 20444193 rs2318556 A C 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.298;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-1.354;SOR=0.859 GT:AD:DP:GQ:PL 0/1:101,79:180:99:1955,0,2389 14 20444441 rs10135246 C A 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.454;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=7.968;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-0.04;QD=12.25;ReadPosRankSum=-0.281;SOR=0.803 GT:AD:DP:GQ:PL 0/1:82,82:164:99:2037,0,2263 14 20444490 rs11158071 C T 1617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=1.348;QD=10.44;ReadPosRankSum=-0.668;SOR=0.842 GT:AD:DP:GQ:PL 0/1:82,73:155:99:1646,0,2153 14 20444588 rs2153466 T C 2450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.311;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=-1.671;QD=18.71;ReadPosRankSum=-0.733;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,68:131:99:0|1:20444588_T_C:2479,0,3078 14 20444607 rs10135467 C G 2542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.181;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-1.923;QD=19.87;ReadPosRankSum=-1.808;SOR=1.015 GT:AD:DP:GQ:PGT:PID:PL 0/1:61,67:128:99:0|1:20444588_T_C:2571,0,3009 14 20482471 rs12590785 C T 3700.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3729,385,0 14 20502120 rs17277032 C T 3282.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3311,347,0 14 20528308 rs10139558 C T 1067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.584;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=3.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=0.523;SOR=0.506 GT:AD:DP:GQ:PL 0/1:56,47:103:99:1096,0,1296 14 20528359 rs1959630 G T 3033.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3062,306,0 14 20586042 rs8005245 G C 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.007;SOR=0.62 GT:AD:DP:GQ:PL 0/1:101,95:196:99:2158,0,2517 14 20586432 rs9323534 C T 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=-0.568;SOR=0.695 GT:AD:DP:GQ:PL 0/1:86,56:142:99:1252,0,2320 14 20665790 rs4981822 T A 4715.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=31.44;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4744,450,0 14 20665840 rs4981088 G A 4108.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4137,406,0 14 20665887 rs4981823 G C 4563.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.47;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4592,435,0 14 20666175 rs55781225 C CA 4210.73 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=29.45;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4248,431,0 14 20692188 rs12891553 T C 1516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.506;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.85;ReadPosRankSum=-0.949;SOR=0.588 GT:AD:DP:GQ:PL 0/1:34,56:90:99:1545,0,763 14 20692291 rs34693535 C T 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.536;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.66;ReadPosRankSum=0.875;SOR=0.753 GT:AD:DP:GQ:PL 0/1:35,57:92:99:1469,0,881 14 20692453 rs17211285 G T 1672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.63;SOR=0.471 GT:AD:DP:GQ:PL 0/1:85,73:158:99:1701,0,2087 14 20692574 rs17277221 T C 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.968;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.137;SOR=0.877 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1953,0,1922 14 20692643 rs17277228 T C 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.9;ReadPosRankSum=0.294;SOR=0.534 GT:AD:DP:GQ:PL 0/1:65,83:148:99:2233,0,1574 14 20764031 rs4981148 C T 1396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=6.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.165;SOR=0.306 GT:AD:DP:GQ:PL 0/1:51,60:111:99:1425,0,1237 14 20764585 rs1953552 A C 879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.567;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-1.591;SOR=0.764 GT:AD:DP:GQ:PL 0/1:47,40:87:99:908,0,1015 14 20767618 rs2318864 G A 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=0.727;SOR=0.513 GT:AD:DP:GQ:PL 0/1:80,55:135:99:1239,0,2056 14 20770036 rs3742945 T C 1629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.04;SOR=0.652 GT:AD:DP:GQ:PL 0/1:78,72:150:99:1658,0,1865 14 20824181 rs3093930 T C 3100.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3129,303,0 14 20847202 rs938887 A G 2231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=4.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-1.439;SOR=0.965 GT:AD:DP:GQ:PL 0/1:106,97:203:99:2260,0,2536 14 20852029 rs1760904 A G 2851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=3.726;SOR=0.713 GT:AD:DP:GQ:PL 0/1:93,118:211:99:2880,0,2234 14 20852817 rs1760903 G A 1352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.265;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.285;SOR=0.58 GT:AD:DP:GQ:PL 0/1:67,58:125:99:1381,0,1614 14 20854734 rs945011 A G 7895.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7924,773,0 14 20863677 rs2228036 C A 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.694;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.623;SOR=0.685 GT:AD:DP:GQ:PL 0/1:100,111:211:99:2499,0,2467 14 20872881 rs1760898 G T 2811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.201;SOR=0.629 GT:AD:DP:GQ:PL 0/1:121,121:242:99:2840,0,2842 14 20876253 rs1760897 A G 3096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.243;SOR=0.708 GT:AD:DP:GQ:PL 0/1:124,135:259:99:3125,0,3095 14 20897064 rs7145318 C T 5322.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5351,541,0 14 20897676 rs1953225 T C 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.45;SOR=0.672 GT:AD:DP:GQ:PL 0/1:82,83:165:99:1949,0,2145 14 20903349 rs1713408 T C 4746.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.305;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.82;ReadPosRankSum=0.896;SOR=0.988 GT:AD:DP:GQ:PL 1/1:2,152:154:99:4775,372,0 14 20903778 rs8017682 G A 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=1.172;SOR=0.914 GT:AD:DP:GQ:PL 0/1:94,113:207:99:2866,0,2289 14 20903906 rs8017603 C T 1828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.516;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.746;SOR=0.892 GT:AD:DP:GQ:PL 0/1:85,78:163:99:1857,0,2014 14 20916958 rs938883 T C 2633.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2662,252,0 14 20916987 rs938882 G A 2140.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2169,210,0 14 20917442 rs938881 A T 1407.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1436,150,0 14 20920250 rs2275007 T C 5554.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=29.08;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5583,572,0 14 20940515 rs1049562 C T 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=-2.234;SOR=0.619 GT:AD:DP:GQ:PL 0/1:59,44:103:99:947,0,1545 14 20940606 rs1049564 G A 1241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=5.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.425;SOR=0.62 GT:AD:DP:GQ:PL 0/1:57,56:113:99:1270,0,1350 14 20940626 rs1130650 C T 1228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.619;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=5.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-2.006;SOR=0.348 GT:AD:DP:GQ:PL 0/1:49,50:99:99:1257,0,1146 14 20942744 rs1713420 A G 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.347;SOR=0.89 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1196,0,1156 14 21024605 rs8014474 G A 1255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.685;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=4.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=0.753;SOR=1.062 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1284,0,880 14 21024619 rs1243647 A G 1372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.713;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=0.544;SOR=0.902 GT:AD:DP:GQ:PL 0/1:40,55:95:99:1401,0,861 14 21024786 rs12590446 A G 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.627;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.534;SOR=0.665 GT:AD:DP:GQ:PL 0/1:51,56:107:99:1433,0,1138 14 21052259 rs1429539 T C 5341.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5370,531,0 14 21058425 rs3827902 G T 1836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.352;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.373;SOR=0.673 GT:AD:DP:GQ:PL 0/1:88,81:169:99:1865,0,2294 14 21109170 rs11628297 T A 4473.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4502,435,0 14 21109278 rs11627438 A T 4106.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4135,398,0 14 21109385 rs11622969 C T 4162.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4191,420,0 14 21109671 rs11627574 A G 3120.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3149,307,0 14 21109726 rs11622794 G A 3535.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3564,368,0 14 21109859 rs11156622 T C 2600.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.395 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2629,249,0 14 21360216 rs2073342 C G 5080.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.842;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.99;ReadPosRankSum=1.974;SOR=0.314 GT:AD:DP:GQ:PL 1/1:1,153:154:99:5109,452,0 14 21467913 rs2234632 T G 3059.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3088,297,0 14 21467928 rs2234633 T C 1105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.781;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.504;SOR=0.7 GT:AD:DP:GQ:PL 0/1:53,44:97:99:1134,0,1334 14 21486137 rs1243445 G C 4721.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4750,463,0 14 21486387 rs4981349 G A 1970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.706;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=7.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.323;SOR=1.234 GT:AD:DP:GQ:PL 0/1:77,76:153:99:1999,0,1942 14 21502345 rs8007176 A G 1288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=1.084;SOR=0.737 GT:AD:DP:GQ:PL 0/1:65,56:121:99:1317,0,1631 14 21511458 rs1263872 G C 7620.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=1.198 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7649,720,0 14 21511497 rs1243469 C T 5365.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.334 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5394,529,0 14 21526044 rs12435011 T C 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.13;SOR=0.628 GT:AD:DP:GQ:PL 0/1:66,63:129:99:1566,0,1533 14 21526079 rs12437266 C T 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.117;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.631;SOR=0.725 GT:AD:DP:GQ:PL 0/1:91,77:168:99:1856,0,2193 14 21542753 rs1243472 G A 3938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=1.697;SOR=0.625 GT:AD:DP:GQ:PL 0/1:137,160:297:99:3967,0,3482 14 21542766 rs12889267 A G 3793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.87;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=3.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-1.562;SOR=0.832 GT:AD:DP:GQ:PL 0/1:167,139:306:99:3822,0,4246 14 21549893 rs7143633 G C 4208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.657;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=6.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=0.733;SOR=1.008 GT:AD:DP:GQ:PL 0/1:180,155:335:99:4237,0,4835 14 21551069 rs1958396 T C 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.921;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=7.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-3.441;SOR=0.992 GT:AD:DP:GQ:PL 0/1:96,90:186:99:2220,0,2065 14 21570614 rs4982408 A C 2670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.169;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=0.061;SOR=0.654 GT:AD:DP:GQ:PL 0/1:96,105:201:99:2699,0,2181 14 21623290 rs7145814 T C 4129.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4158,393,0 14 21623303 rs45603634 G T 1727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.969;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=3.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=0.796;SOR=0.473 GT:AD:DP:GQ:PL 0/1:56,73:129:99:1756,0,1566 14 21623489 rs45462402 C T 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=1.993;SOR=0.922 GT:AD:DP:GQ:PL 0/1:62,56:118:99:1434,0,1661 14 21623648 rs7161544 G A 2259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.769;SOR=0.754 GT:AD:DP:GQ:PL 0/1:88,93:181:99:2288,0,2126 14 21623836 rs4982419 G A 5360.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5389,518,0 14 21624197 rs10135366 T C 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.713;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=0.023;SOR=0.75 GT:AD:DP:GQ:PL 0/1:49,51:100:99:1395,0,1240 14 21770681 rs17792599 A G 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=0.319;SOR=0.836 GT:AD:DP:GQ:PL 0/1:51,68:119:99:1453,0,1141 14 21770730 rs6571751 A G 1009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.667;SOR=0.715 GT:AD:DP:GQ:PL 0/1:48,42:90:99:1038,0,1131 14 21785790 rs3748357 G A 1778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.254;SOR=0.515 GT:AD:DP:GQ:PL 0/1:67,67:134:99:1807,0,1911 14 21790040 rs10151259 G T 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.605;SOR=0.637 GT:AD:DP:GQ:PL 0/1:60,54:114:99:1306,0,1503 14 21790154 rs147586703 C T 1320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.629;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-3.586;SOR=0.859 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1349,0,1491 14 21792811 rs9322965 G A 1306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.564;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=0.329;SOR=0.791 GT:AD:DP:GQ:PL 0/1:71,59:130:99:1335,0,1647 14 21793236 rs7157052 G A 1062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=11.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.713;SOR=1.598 GT:AD:DP:GQ:PL 0/1:69,43:112:99:1091,0,1779 14 21796784 rs3748361 G C 1099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=8.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.402;SOR=1.545 GT:AD:DP:GQ:PL 0/1:47,43:90:99:1128,0,1146 14 21829129 rs3762158 C G 6591.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6620,626,0 14 21831052 rs10138699 T C 4651.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.274;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.07;ReadPosRankSum=0.134;SOR=0.644 GT:AD:DP:GQ:PL 1/1:3,157:160:99:4680,390,0 14 21831112 rs10146717 G A 4698.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4727,478,0 14 21871653 rs8022395 C T 3387.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3416,357,0 14 21930596 rs10143000 G A 2596.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.218 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2625,261,0 14 21967438 rs3168880 G A 3399.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3428,336,0 14 21967916 rs1139130 A G 2426.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.58;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2455,262,0 14 21971729 rs2242526 C G 5205.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=1.124 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5234,492,0 14 21991626 rs1263810 C G 2767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=0.182;SOR=0.825 GT:AD:DP:GQ:PL 0/1:100,111:211:99:2796,0,2467 14 21993498 rs1263811 G A 3922.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.96;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3951,357,0 14 22038450 rs11626669 G A 5980.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6009,587,0 14 22038525 rs11626693 G T 2095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.457;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.715;SOR=0.794 GT:AD:DP:GQ:PL 0/1:97,87:184:99:2124,0,2317 14 22038659 rs17792778 T C 4296.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4325,423,0 14 22102374 rs12894405 T C 5875.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.85;QD=29.23;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5904,602,0 14 22102439 rs35963889 C G 4738.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.02;QD=28.38;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4767,500,0 14 22102592 rs10138694 T C 2496.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.62;QD=43.8;SOR=2.107 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,57:57:99:1|1:22102592_T_C:2525,178,0 14 22102612 rs10138704 T C 2765.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.61;QD=39.51;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,70:70:99:1|1:22102592_T_C:2794,211,0 14 22133416 rs12717305 A G 3328.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3357,345,0 14 22133648 rs2874103 G A 6551.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6580,674,0 14 22133997 rs970382 A G 5168.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5197,513,0 14 22978335 rs226997 C T 6540.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=28.19;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6569,693,0 14 23020688 rs11462449 G GC 11503.7 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.59;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,306:306:99:11541,933,0 14 23020820 rs5807168 G GC 17476.7 PASS AC=2;AF=1;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.64;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,430:430:99:17514,1300,0 14 23020825 rs3699 G C 4397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.495;ClippingRankSum=0;DB;DP=447;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=-0.851;QD=9.88;ReadPosRankSum=-0.958;SOR=0.612 GT:AD:DP:GQ:PL 0/1:257,188:445:99:4426,0,6311 14 23020919 rs3700 C T 6368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.369;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.277;QD=15.65;ReadPosRankSum=-0.351;SOR=0.777 GT:AD:DP:GQ:PGT:PID:PL 0/1:239,168:407:99:0|1:23020919_C_T:6397,0,9881 14 23020921 rs3701 G C 6368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.659;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.281;QD=15.69;ReadPosRankSum=-0.426;SOR=0.718 GT:AD:DP:GQ:PGT:PID:PL 0/1:238,168:406:99:0|1:23020919_C_T:6397,0,9881 14 23020970 rs3702 G T 3635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0;DB;DP=375;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.334;QD=9.7;ReadPosRankSum=-0.721;SOR=0.705 GT:AD:DP:GQ:PL 0/1:214,161:375:99:3664,0,5533 14 23044002 rs7621 G T 1463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=1.151;SOR=0.74 GT:AD:DP:GQ:PL 0/1:62,59:121:99:1492,0,1621 14 23235808 rs1957374 G A 4427.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4456,448,0 14 23236524 rs8572 C T 5085.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5114,545,0 14 23242828 rs1061040 T C 3697.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3726,392,0 14 23282110 rs8018462 A G 2333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.805;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.05;QD=11.55;ReadPosRankSum=1.38;SOR=0.678 GT:AD:DP:GQ:PL 0/1:105,97:202:99:2362,0,2282 14 23282449 rs1805059 C T 2658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.925;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.215;SOR=0.716 GT:AD:DP:GQ:PL 0/1:114,107:221:99:2687,0,2793 14 23282512 rs45479698 C T 2278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.431;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.142;SOR=0.795 GT:AD:DP:GQ:PL 0/1:94,97:191:99:2307,0,2582 14 23299135 rs1135641 G T 2643.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.05;SOR=1.31 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2672,240,0 14 23299286 rs4982685 T C 6809.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6838,621,0 14 23306048 rs1042703 C T 3383.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3412,333,0 14 23312923 rs2236307 T C 5079.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5108,470,0 14 23371055 rs1127066 G C 6197.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.45;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,191:191:99:6226,572,0 14 23371255 rs61680322 G GGGC 6100.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=1.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.83;ReadPosRankSum=2.904;SOR=0.601 GT:AD:DP:GQ:PL 0/1:164,160:326:99:6138,0,6426 14 23371268 rs56708790 A G 3536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-0.241;SOR=0.755 GT:AD:DP:GQ:PL 0/1:187,157:344:99:3565,0,6989 14 23374435 rs2295680 G A 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.91;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.701;SOR=0.495 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1877,0,1950 14 23374862 rs2295682 C T 726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.24;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.372;SOR=0.716 GT:AD:DP:GQ:PL 0/1:35,33:68:99:755,0,922 14 23394069 rs1956881 A C 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.085;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.209;SOR=0.693 GT:AD:DP:GQ:PL 0/1:89,68:157:99:1707,0,2076 14 23530622 rs60168438 T C 3343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.066;SOR=0.714 GT:AD:DP:GQ:PL 0/1:148,141:289:99:3372,0,3556 14 23548927 rs115842044 G A 2843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.16;SOR=0.695 GT:AD:DP:GQ:PL 0/1:118,120:238:99:2872,0,3147 14 23549379 rs941719 C G 7191.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7220,690,0 14 23598849 rs7157207 T G 1480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.374;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.256;SOR=0.608 GT:AD:DP:GQ:PL 0/1:79,58:137:99:1509,0,2011 14 23598952 rs7157021 A G 1701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.344;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-0.026;SOR=0.554 GT:AD:DP:GQ:PL 0/1:108,74:182:99:1730,0,2490 14 23607246 rs1015089 C A 1977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=4.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.99;SOR=1.012 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2006,0,2119 14 23624583 rs8011016 C T 5739.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5768,569,0 14 23731855 rs55661012 C CT 1075.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.449;SOR=0.485 GT:AD:DP:GQ:PL 0/1:51,49:102:99:1113,0,947 14 23744826 rs67447855 TTCC T 2279.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.301;QD=20.54;ReadPosRankSum=0.689;SOR=0.771 GT:AD:DP:GQ:PL 0/1:51,60:113:99:2317,0,2008 14 23746269 rs1057119 C G 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.783;SOR=0.748 GT:AD:DP:GQ:PL 0/1:102,96:198:99:2402,0,2587 14 23777374 rs910332 A G 10988.8 PASS AC=2;AF=1;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,365:365:99:11017,1095,0 14 23790864 rs188436762 G A 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.395;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.21;ReadPosRankSum=-0.678;SOR=1.146 GT:AD:DP:GQ:PL 0/1:44,67:111:99:1827,0,1322 14 23826822 rs2231809 C T 2087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.284;SOR=0.543 GT:AD:DP:GQ:PL 0/1:120,95:215:99:2116,0,2989 14 23830042 rs2231798 T C 3253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.127;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.77;ReadPosRankSum=-0.529;SOR=1.208 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,87:194:99:0|1:23830042_T_C:3282,0,4844 14 23830048 rs2231797 T G 3146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.09;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.3;ReadPosRankSum=-0.376;SOR=1.048 GT:AD:DP:GQ:PGT:PID:PL 0/1:109,84:193:99:0|1:23830042_T_C:3175,0,4949 14 23844979 rs79877597 C A 3147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.611;SOR=0.584 GT:AD:DP:GQ:PL 0/1:143,132:275:99:3176,0,3504 14 23848311 rs723840 C T 4505.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4534,478,0 14 23855511 rs28730765 C T 2612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.936;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=0.942;SOR=0.939 GT:AD:DP:GQ:PL 0/1:145,108:253:99:2641,0,3664 14 23855569 rs178640 A G 9902.77 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.85;QD=30.28;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,327:327:99:9931,981,0 14 23855849 rs2071634 C T 2186.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.83;QD=26.35;SOR=1.911 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2215,242,0 14 23857351 rs8022522 G A 8431.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=29.18;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8460,864,0 14 23858271 rs193922652 AG A 1065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.817;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=20.168;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=12.11;ReadPosRankSum=-1.374;SOR=1.014 GT:AD:DP:GQ:PL 0/1:34,54:94:99:1094,0,596 14 23859610 rs28730771 C T 3610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=0.383;MLEAC=1;MLEAF=0.5;MQ=53.48;MQRankSum=-0.287;QD=10.06;ReadPosRankSum=0.635;SOR=0.661 GT:AD:DP:GQ:PL 0/1:191,168:359:99:3639,0,4555 14 23869993 rs61731179 G A 4096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.197;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.5;MQ=59.24;MQRankSum=-5.07;QD=12.05;ReadPosRankSum=1.11;SOR=0.548 GT:AD:DP:GQ:PL 0/1:175,165:340:99:4125,0,4430 14 23872666 rs434273 T C 1345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.172;SOR=0.432 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1374,0,1454 14 23902753 rs2069540 G A 4308.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4337,399,0 14 23944505 rs2236260 G A 4884.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.23;SOR=1.081 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,113:113:99:1|1:23944505_G_A:4913,340,0 14 23944514 rs2236261 C A 4859.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=1.148 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,109:109:99:1|1:23944505_G_A:4888,337,0 14 23945366 rs2295706 A G 4193.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4222,384,0 14 23992742 rs223124 T G 3504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-1.124;SOR=0.638 GT:AD:DP:GQ:PL 0/1:160,151:311:99:3533,0,3829 14 23994517 rs4982766 A G 4489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.535;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=0.107;SOR=0.626 GT:AD:DP:GQ:PL 0/1:169,167:336:99:4518,0,3824 14 24002887 rs3742489 G T 3259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.257;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.089;SOR=0.8 GT:AD:DP:GQ:PL 0/1:155,138:293:99:3288,0,3707 14 24423090 rs2273944 A G 4347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.07;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=2.336;SOR=0.689 GT:AD:DP:GQ:PL 0/1:161,183:344:99:4376,0,3704 14 24429093 rs11158474 A C 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.083;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.77;MQRankSum=-5.563;QD=9.32;ReadPosRankSum=-2.443;SOR=0.687 GT:AD:DP:GQ:PL 0/1:88,61:149:99:1417,0,2063 14 24458162 rs2273946 G C 4454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.674;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=4.272;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.943;QD=13.62;ReadPosRankSum=0.614;SOR=0.508 GT:AD:DP:GQ:PL 0/1:155,172:327:99:4483,0,4261 14 24459443 rs45579231 G C 6292.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.187;ClippingRankSum=0;DB;DP=523;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.5;MQ=59.75;MQRankSum=-2.112;QD=12.08;ReadPosRankSum=-1.102;SOR=0.847 GT:AD:DP:GQ:PL 0/1:259,262:521:99:6321,0,5874 14 24464223 rs112221846 C A 1111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.642;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.353;MLEAC=1;MLEAF=0.5;MQ=50.83;MQRankSum=-6.37;QD=7.88;ReadPosRankSum=0.224;SOR=0.978 GT:AD:DP:GQ:PL 0/1:94,47:141:99:1140,0,2489 14 24522911 rs35809913 C G 1523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.376;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.128;SOR=0.497 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1552,0,1366 14 24526206 rs45484702 T C 1699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.002;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-0.049;SOR=0.582 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1728,0,1516 14 24529820 rs1951636 C G 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.856;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.09;ReadPosRankSum=2.285;SOR=0.651 GT:AD:DP:GQ:PL 0/1:65,102:167:99:2715,0,1392 14 24529890 rs1951635 A G 6285.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6314,609,0 14 24533539 rs10146906 C A 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.318;SOR=0.889 GT:AD:DP:GQ:PL 0/1:57,45:102:99:1004,0,1424 14 24543808 rs2070343 G C 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.174;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-1.39;SOR=0.751 GT:AD:DP:GQ:PL 0/1:67,47:114:99:1303,0,1741 14 24545366 rs2070342 T C 3159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.045;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=0.094;SOR=0.862 GT:AD:DP:GQ:PL 0/1:88,128:216:99:3188,0,3249 14 24545375 rs2070341 C T 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=3.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=0.082;SOR=0.478 GT:AD:DP:GQ:PL 0/1:139,93:232:99:1956,0,5341 14 24563620 rs77298044 C T 2179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.844;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.365;SOR=0.491 GT:AD:DP:GQ:PL 0/1:100,89:189:99:2208,0,2440 14 24567498 rs3021119 A C 5534.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5563,543,0 14 24614361 rs7146672 T G 5085.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5114,492,0 14 24624741 rs2295979 C G 3474.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3503,324,0 14 24646406 rs10690822 G GGAA 4530.73 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.31;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,100:100:99:4568,307,0 14 24647814 rs1885711 T C 4387.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4416,453,0 14 24653523 rs11550452 G C 7233.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7262,696,0 14 24653954 rs7146310 G A 2989.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3018,290,0 14 24654489 rs2025258 T C 5200.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5229,510,0 14 24657407 rs6573607 T G 3639.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=1.549 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3668,345,0 14 24662177 rs10583 C T 7977.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8006,786,0 14 24680606 rs71119065 TC T 2090.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=3.183;SOR=0.701 GT:AD:DP:GQ:PL 0/1:87,83:170:99:2128,0,2233 14 24707479 rs34354104 G A 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=0.735;SOR=0.608 GT:AD:DP:GQ:PL 0/1:44,67:111:99:1748,0,1124 14 24718515 rs2229463 G A 1149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.664;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.59;MQRankSum=1.103;QD=10.55;ReadPosRankSum=-1.506;SOR=0.757 GT:AD:DP:GQ:PL 0/1:60,49:109:99:1178,0,1477 14 24724663 rs35312232 C T 2331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=1.024;SOR=0.734 GT:AD:DP:GQ:PL 0/1:113,105:218:99:2360,0,2835 14 24728294 rs1126432 G T 1790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.55;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=-0.967;SOR=0.596 GT:AD:DP:GQ:PL 0/1:83,74:157:99:1819,0,2080 14 24736027 rs14193 G A 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.65;ReadPosRankSum=-1.025;SOR=1.056 GT:AD:DP:GQ:PL 0/1:84,54:138:99:1084,0,2150 14 24736961 rs729421 T C 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.675;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.17;ReadPosRankSum=2.712;SOR=0.916 GT:AD:DP:GQ:PL 0/1:58,74:132:99:2163,0,1427 14 24738379 rs59227799 T C 1219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=0.237;SOR=0.914 GT:AD:DP:GQ:PL 0/1:46,52:98:99:1248,0,1102 14 24739363 rs58050348 A AG 1487.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.409;QD=11.02;ReadPosRankSum=1.023;SOR=0.715 GT:AD:DP:GQ:PL 0/1:68,67:138:99:1525,0,1658 14 24760808 rs1131941 C T 3801.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3830,387,0 14 24769663 rs11158632 T G 5555.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=4.599;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.11;ReadPosRankSum=1.316;SOR=1.351 GT:AD:DP:GQ:PL 1/1:1,172:173:99:5584,509,0 14 24769849 rs113258190 A AGAG 8009.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=5.952;MLEAC=2;MLEAF=1;MQ=60.17;MQRankSum=0;QD=39.26;ReadPosRankSum=0.625;SOR=0.227 GT:AD:DP:GQ:PL 1/1:13,191:206:51:8047,51,0 14 24771256 rs4247001 T C 3841.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3870,386,0 14 24771285 rs4280164 G A 3866.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3895,374,0 14 24772922 rs4982895 C T 2399.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2428,240,0 14 24773387 rs2144494 T C 4142.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4171,399,0 14 24793600 rs1884366 G A 4934.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.497 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4963,491,0 14 24836815 rs28365903 C G 2972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.04;QD=11.8;ReadPosRankSum=0.051;SOR=0.771 GT:AD:DP:GQ:PL 0/1:130,122:252:99:3001,0,3231 14 24839165 rs2228233 C T 7279.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7308,696,0 14 24882312 rs2273634 G C 491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.429;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.68;ReadPosRankSum=-0.369;SOR=0.744 GT:AD:DP:GQ:PL 0/1:43,21:64:99:520,0,1023 14 24883887 rs8017377 G A 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-1.276;SOR=0.665 GT:AD:DP:GQ:PL 0/1:86,74:160:99:1771,0,2228 14 24901276 rs7151995 G T 7490.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.92;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.08;ReadPosRankSum=1.946;SOR=0.322 GT:AD:DP:GQ:PL 1/1:1,248:249:99:7519,736,0 14 24901433 rs17795094 C T 3313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=-0.422;SOR=0.739 GT:AD:DP:GQ:PL 0/1:112,123:235:99:3342,0,2850 14 24909281 rs1043839 C T 1684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.14;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-2.387;SOR=0.857 GT:AD:DP:GQ:PL 0/1:71,64:135:99:1713,0,1989 14 24909362 rs1043831 T C 2943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.24;SOR=0.746 GT:AD:DP:GQ:PL 0/1:133,130:263:99:2972,0,3078 14 24909475 rs3211056 C G 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-1.661;SOR=0.73 GT:AD:DP:GQ:PL 0/1:126,103:229:99:2275,0,3441 14 24909629 rs11538256 C A 2113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-1.581;SOR=0.713 GT:AD:DP:GQ:PL 0/1:87,92:179:99:2142,0,2167 14 24910876 rs11158703 G A 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.708;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=9.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=0.295;SOR=1.33 GT:AD:DP:GQ:PL 0/1:93,71:164:99:1693,0,2173 14 24910973 rs11625819 T G 2734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.439;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.12;ReadPosRankSum=0.924;SOR=0.787 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,71:143:99:0|1:24910973_T_G:2763,0,3744 14 24910974 rs11625820 T A 2734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.233;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.4;ReadPosRankSum=0.722;SOR=0.84 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,71:141:99:0|1:24910973_T_G:2763,0,3744 14 24911452 rs11538255 T C 2425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=5.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=1.321;SOR=1.002 GT:AD:DP:GQ:PL 0/1:76,92:168:99:2454,0,2017 14 24975435 rs5249 G T 6019.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6048,615,0 14 25043671 rs45567233 T C 1893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.656;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=1.416;SOR=0.545 GT:AD:DP:GQ:PL 0/1:73,73:146:99:1922,0,1782 14 25076836 rs142357322 G A 487.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=7.998;MLEAC=1;MLEAF=0.5;MQ=55.4;MQRankSum=-5.145;QD=1.86;ReadPosRankSum=-0.843;SOR=1.314 GT:AD:DP:GQ:PGT:PID:PL 0/1:225,37:262:99:0|1:25076836_G_A:516,0,8710 14 25076906 rs20545 C T 2701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.246;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=54.68;MQRankSum=-10.65;QD=11.55;ReadPosRankSum=1.585;SOR=0.645 GT:AD:DP:GQ:PL 0/1:113,121:243:99:2730,0,2582 14 25100282 rs2236338 A G 1049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-1.032;SOR=0.515 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1078,0,1016 14 25101548 rs1126639 G A 529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.573;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=24.119;MLEAC=1;MLEAF=0.5;MQ=55.89;MQRankSum=-9.181;QD=3.46;ReadPosRankSum=0.384;SOR=2.892 GT:AD:DP:GQ:PL 0/1:127,26:153:99:558,0,3496 14 25101589 rs11539752 G C 1063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.745;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=15.468;MLEAC=1;MLEAF=0.5;MQ=56.28;MQRankSum=-9.213;QD=5.57;ReadPosRankSum=-0.499;SOR=1.459 GT:AD:DP:GQ:PL 0/1:144,47:191:99:1092,0,3705 14 25101629 rs10909625 T C 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.362;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=10.029;MLEAC=1;MLEAF=0.5;MQ=57.64;MQRankSum=-7.345;QD=6.65;ReadPosRankSum=-0.809;SOR=0.707 GT:AD:DP:GQ:PL 0/1:136,67:203:99:1379,0,3316 14 25102160 rs8192917 C T 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.102;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=1.941;SOR=0.422 GT:AD:DP:GQ:PL 0/1:83,57:140:99:1330,0,2079 14 30047580 rs2273815 C T 788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=0.576;SOR=0.558 GT:AD:DP:GQ:PL 0/1:27,35:62:99:817,0,628 14 30066929 rs2230505 A G 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.784;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=0.155;SOR=0.804 GT:AD:DP:GQ:PL 0/1:97,70:167:99:1711,0,2333 14 30066976 rs3783299 A T 898.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-1.51;SOR=0.53 GT:AD:DP:GQ:PL 0/1:51,40:91:99:927,0,1335 14 30194899 rs11626603 T C 750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.657;SOR=0.559 GT:AD:DP:GQ:PL 0/1:39,33:72:99:779,0,1022 14 31099738 rs229150 A G 612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.91;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-2.779;SOR=0.596 GT:AD:DP:GQ:PL 0/1:32,28:60:99:641,0,710 14 31108977 rs2273521 T C 111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.156;ClippingRankSum=-0;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=7.98;ReadPosRankSum=-0.864;SOR=1.112 GT:AD:DP:GQ:PL 0/1:9,5:14:99:140,0,246 14 31355096 rs1045644 C G 1588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.705;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=0.672;SOR=0.572 GT:AD:DP:GQ:PL 0/1:90,66:156:99:1617,0,2180 14 31364099 rs34255465 C CT 268.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.897;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=0.236;SOR=1.042 GT:AD:DP:GQ:PL 0/1:11,17:28:93:306,0,93 14 31381351 rs2273171 T C 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.386;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=2.564;SOR=0.671 GT:AD:DP:GQ:PL 0/1:87,72:159:99:1748,0,1950 14 31425457 rs17097614 A T 961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.106;SOR=0.808 GT:AD:DP:GQ:PL 0/1:43,46:89:99:990,0,966 14 31495346 rs2281563 C T 4152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.15;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=0.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=1.34;SOR=0.63 GT:AD:DP:GQ:PL 0/1:152,174:326:99:4181,0,3787 14 31578762 rs17097735 C T 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.425;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.3;ReadPosRankSum=-0.564;SOR=0.788 GT:AD:DP:GQ:PL 0/1:107,53:160:99:1197,0,2671 14 31582380 rs1315794 A G 2525.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.68;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2554,224,0 14 31582526 rs2273483 T C 1436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.129;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=-0.976;SOR=0.82 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1465,0,1100 14 31598248 rs17097743 A G 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.518;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.271;SOR=0.644 GT:AD:DP:GQ:PL 0/1:102,87:189:99:2325,0,2554 14 31619392 rs11620816 T C 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.905;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=0.316;SOR=0.994 GT:AD:DP:GQ:PL 0/1:36,43:79:99:1194,0,956 14 31647241 rs2274201 G A 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=0.762;SOR=0.625 GT:AD:DP:GQ:PL 0/1:44,47:91:99:1181,0,1202 14 31795361 rs3736917 A G 839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.91;SOR=0.415 GT:AD:DP:GQ:PL 0/1:33,36:69:99:868,0,788 14 31819047 rs3736918 C T 2561.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2590,264,0 14 31819913 rs7158257 A G 1784.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1813,188,0 14 31858209 rs7157977 C T 536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.83;ReadPosRankSum=-1.593;SOR=1.24 GT:AD:DP:GQ:PL 0/1:64,28:92:99:565,0,1545 14 31864485 rs7141532 G C 2494.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2523,249,0 14 32142544 rs35659584 A AT 343.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.747;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=11.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.25;ReadPosRankSum=-0.847;SOR=1.927 GT:AD:DP:GQ:PL 0/1:33,22:62:99:381,0,676 14 33004975 rs35436895 G A 3286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.612;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=5.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-2.97;SOR=0.966 GT:AD:DP:GQ:PL 0/1:121,133:254:99:3315,0,2745 14 33014869 rs3742926 C T 3015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.921;SOR=0.609 GT:AD:DP:GQ:PL 0/1:115,120:235:99:3044,0,3104 14 33015014 rs7150894 G A 5732.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5761,560,0 14 33015082 rs17099240 A G 3208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.315;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.29;ReadPosRankSum=0.219;SOR=0.542 GT:AD:DP:GQ:PL 0/1:86,111:197:99:3237,0,2161 14 33015397 rs45477296 G T 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.633;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-2.306;SOR=0.681 GT:AD:DP:GQ:PL 0/1:97,79:176:99:2029,0,2456 14 33046388 rs1950703 A G 4487.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4516,449,0 14 33165182 rs3742929 C T 3832.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3861,398,0 14 33292743 rs2239647 A C 1849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.433;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.307;SOR=0.642 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1878,0,1847 14 33293122 rs1051695 A G 1937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.434;SOR=0.721 GT:AD:DP:GQ:PL 0/1:99,86:185:99:1966,0,2355 14 33293531 rs4647899 T A 2757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.387;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.51;SOR=0.766 GT:AD:DP:GQ:PL 0/1:124,118:242:99:2786,0,2901 14 34985645 rs7797 G A 5077.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5106,483,0 14 35062312 rs12432539 C T 2433.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2462,249,0 14 35182348 . G GA 49.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=3.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.78;ReadPosRankSum=0.183;SOR=0.35 GT:AD:DP:GQ:PL 0/1:54,10:74:87:87,0,1155 14 35242828 rs2275145 G A 2713.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2742,275,0 14 35492299 rs202204501 AG A 913.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.75;ReadPosRankSum=0.503;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,25:58:99:0|1:35492299_AG_A:951,0,6621 14 35492301 rs369856554 CTTGTTATTAGTTAACAG C 907.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.13;ReadPosRankSum=0.558;SOR=0.573 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,25:60:99:0|1:35492299_AG_A:945,0,6686 14 35497285 rs78609489 T C 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.341;SOR=0.509 GT:AD:DP:GQ:PL 0/1:41,55:96:99:1169,0,868 14 35565856 rs17091786 A T 1287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=0.089;SOR=0.582 GT:AD:DP:GQ:PL 0/1:49,54:103:99:1316,0,1183 14 35591174 rs1056879 T C 1563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.913;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.586;SOR=0.538 GT:AD:DP:GQ:PL 0/1:55,65:120:99:1592,0,1250 14 35592538 rs941653 C G 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.719;SOR=0.641 GT:AD:DP:GQ:PL 0/1:70,46:116:99:1289,0,1982 14 35761675 rs1048990 C G 3025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=0.64;SOR=0.702 GT:AD:DP:GQ:PL 0/1:127,114:241:99:3054,0,3480 14 35873770 rs1957106 G A 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=4.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.851;SOR=0.988 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2422,0,2249 14 36003698 rs112804872 T C 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=10.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.387;SOR=0.754 GT:AD:DP:GQ:PL 0/1:113,92:205:99:2000,0,2809 14 36004075 rs1958260 A G 9555.77 PASS AC=2;AF=1;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,305:305:99:9584,914,0 14 36121087 rs35892589 CA C 2746.73 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.53;QD=25.43;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2784,324,0 14 36218039 . CA C 117.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.68;ReadPosRankSum=1.054;SOR=1.426 GT:AD:DP:GQ:PL 0/1:30,14:51:99:155,0,657 14 36768276 rs4900833 T C 2282.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.18;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2311,252,0 14 36789729 rs3168891 T G 6844.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6873,645,0 14 36789775 rs2899849 A T 9586.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.38;SOR=1.035 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,221:221:99:1|1:36789775_A_T:9615,665,0 14 36789795 rs11558802 G A 9658.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.7;SOR=1.083 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,221:221:99:1|1:36789775_A_T:9687,671,0 14 37344229 rs5807914 A AG 2421.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.7;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2459,184,0 14 38061742 rs7144658 C T 9682.77 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,329:329:99:9711,983,0 14 38222291 rs4901176 G C 2569.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.63;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2598,278,0 14 38266074 rs9805910 C T 2313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=1.723;SOR=0.668 GT:AD:DP:GQ:PL 0/1:77,96:173:99:2342,0,1799 14 38277999 rs4901284 C T 621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.413;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.472;SOR=0.592 GT:AD:DP:GQ:PL 0/1:25,28:53:99:650,0,541 14 38679763 . C CGCTCTGAGCCCGGGCCACGCAGGG 3716.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.011;ClippingRankSum=0;DP=360;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=61.86;MQRankSum=9.62;QD=13.61;ReadPosRankSum=0.696;SOR=0.616 GT:AD:DP:GQ:PL 0/1:164,109:275:99:3754,0,8608 14 39502539 rs11418467 G GA 1008.73 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1046,105,0 14 39517925 rs11556216 T C 851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=0.966;SOR=0.937 GT:AD:DP:GQ:PL 0/1:31,33:64:99:880,0,706 14 39556185 rs8018720 G C 1748.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1777,171,0 14 39602849 . CT C 153.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.419;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.15;ReadPosRankSum=-0.957;SOR=0.926 GT:AD:DP:GQ:PL 0/1:23,14:39:99:191,0,510 14 39619587 rs150886646 TA T 514.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.917;QD=9.71;ReadPosRankSum=1.495;SOR=0.655 GT:AD:DP:GQ:PL 0/1:24,29:55:99:552,0,539 14 39620936 rs8003807 C T 1691.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=28.67;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1720,177,0 14 39648629 rs11558739 C T 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=-0.693;SOR=0.643 GT:AD:DP:GQ:PL 0/1:40,53:93:99:1325,0,998 14 39650234 rs2180792 A T 2819.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2848,270,0 14 39703324 rs7141840 A G 453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.09;ReadPosRankSum=-0.294;SOR=0.61 GT:AD:DP:GQ:PL 0/1:41,23:64:99:482,0,1020 14 39736680 rs7140561 T C 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.806;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.297;SOR=0.928 GT:AD:DP:GQ:PL 0/1:93,84:177:99:2158,0,2117 14 39777676 rs1950952 G C 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=1.033;SOR=0.749 GT:AD:DP:GQ:PL 0/1:53,77:130:99:1817,0,1242 14 39784010 . A ATGTG 1403.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.32;ReadPosRankSum=2.138;SOR=0.777 GT:AD:DP:GQ:PL 0/1:47,39:98:99:1441,0,1913 14 39784012 rs12436164 A G 2407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.254;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.29;ReadPosRankSum=1.21;SOR=0.684 GT:AD:DP:GQ:PL 0/1:45,63:108:99:2436,0,1723 14 39784014 rs2415539 A G,ATG 3185.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=32.18;ReadPosRankSum=-1.226;SOR=0.714 GT:AD:DP:GQ:PL 1/2:6,63,30:99:99:3214,556,1417,2548,0,3008 14 39788501 . CT C 193.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.632;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.65;ReadPosRankSum=0.838;SOR=0.742 GT:AD:DP:GQ:PL 0/1:54,19:75:99:231,0,1313 14 39796048 rs36031495 GT G 1119.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.371;QD=12.72;ReadPosRankSum=-0.444;SOR=0.634 GT:AD:DP:GQ:PL 0/1:33,55:88:99:1157,0,677 14 42356269 rs117966123 C T 1605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.677;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.419;SOR=0.965 GT:AD:DP:GQ:PL 0/1:101,66:167:99:1634,0,2560 14 42360633 rs6572117 T C 2312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.236;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-0.074;SOR=0.505 GT:AD:DP:GQ:PL 0/1:79,93:172:99:2341,0,1946 14 44974922 rs3825632 A T 6222.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6251,585,0 14 44975510 rs3809430 C T 5185.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5214,506,0 14 45432870 rs3825629 G C 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.113;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=5.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-1.47;SOR=1.086 GT:AD:DP:GQ:PL 0/1:66,59:125:99:1845,0,1960 14 45433155 rs3742591 C G 1257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.134;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=0.843;SOR=0.873 GT:AD:DP:GQ:PL 0/1:86,49:135:99:1286,0,2618 14 45515838 rs74907291 A G 2038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.901;SOR=0.696 GT:AD:DP:GQ:PL 0/1:92,90:182:99:2067,0,2082 14 45535985 rs12100842 G A 646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=0.456;SOR=1.002 GT:AD:DP:GQ:PL 0/1:37,29:66:99:675,0,954 14 45606287 rs10138997 C T 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=0.996;SOR=0.558 GT:AD:DP:GQ:PL 0/1:30,41:71:99:1024,0,752 14 45628283 rs112326758 TTA T 2357.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;MQRankSum=0.248;QD=35.72;ReadPosRankSum=-0.158;SOR=0.788 GT:AD:DP:GQ:PL 1/1:1,65:66:99:2395,178,0 14 45644589 rs1367580 G T 1819.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1848,168,0 14 45650900 rs78211950 A G 1641.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1670,174,0 14 45654410 rs34252356 TCTTA T 2291.73 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.07;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,52:52:99:2329,157,0 14 45665468 rs3736772 C G 4449.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4478,423,0 14 45696037 rs34101857 T G 486.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=1.739 GT:AD:DP:GQ:PL 1/1:0,17:17:50:515,50,0 14 45711594 rs1266209 T C 6386.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.59;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6415,588,0 14 47613364 rs72680210 G T 944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=1.643;SOR=0.894 GT:AD:DP:GQ:PL 0/1:49,43:92:99:973,0,1222 14 50074122 rs17121605 T A 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.037;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-0.681;SOR=0.564 GT:AD:DP:GQ:PL 0/1:73,81:154:99:1892,0,1621 14 50074520 rs7148147 C T 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.42;ReadPosRankSum=-1.253;SOR=0.827 GT:AD:DP:GQ:PL 0/1:106,66:172:99:1476,0,2800 14 50085571 rs1054427 G A 1756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.264;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=59.63;MQRankSum=-0.89;QD=13.41;ReadPosRankSum=-0.417;SOR=0.631 GT:AD:DP:GQ:PL 0/1:61,70:131:99:1785,0,1660 14 50100386 rs2985687 T C 4013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.127;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=2.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=-0.166;SOR=0.851 GT:AD:DP:GQ:PL 0/1:139,144:283:99:4042,0,3513 14 50100683 rs2985686 C G 4680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=2.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=0.152;SOR=0.56 GT:AD:DP:GQ:PL 0/1:160,179:339:99:4709,0,4190 14 50101370 rs2985685 G A 4140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.828;SOR=0.623 GT:AD:DP:GQ:PL 0/1:181,166:349:99:4169,0,4770 14 50101682 rs2985684 C G 3783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.239;SOR=0.857 GT:AD:DP:GQ:PL 0/1:155,150:305:99:3812,0,4174 14 50120858 rs3212323 C T 468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.44;ReadPosRankSum=0.536;SOR=0.559 GT:AD:DP:GQ:PL 0/1:40,23:63:99:497,0,1008 14 50131846 rs3218791 G T 174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.054;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.06;ReadPosRankSum=0.549;SOR=1.519 GT:AD:DP:GQ:PL 0/1:33,10:43:99:203,0,744 14 50133033 rs3218797 T C 425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.524;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-0.317;SOR=1.124 GT:AD:DP:GQ:PL 0/1:19,18:37:99:454,0,409 14 50133057 rs3218798 C T 362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=0.602;SOR=0.653 GT:AD:DP:GQ:PL 0/1:25,20:45:99:391,0,565 14 50195679 rs4301946 A G 3173.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.84;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3202,342,0 14 50251369 rs10143621 A G 2084.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2113,213,0 14 50267424 rs200950065 T TA 1006.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.238;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=6.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=0.341;SOR=1.668 GT:AD:DP:GQ:PL 0/1:41,34:75:99:1044,0,1309 14 50280688 rs3126195 T A 602.77 PASS AC=2;AF=1;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.21;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,23:23:68:631,68,0 14 50298962 rs3100906 T A 2211.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2240,233,0 14 50459609 rs10134002 T C 2443.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2472,239,0 14 50472405 rs6572635 G A 3063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=4.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.935;SOR=0.484 GT:AD:DP:GQ:PL 0/1:125,130:255:99:3092,0,2960 14 50583083 rs11157729 G T 3395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.063;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=7.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=1.453;SOR=1.094 GT:AD:DP:GQ:PL 0/1:145,129:274:99:3424,0,4186 14 50585248 rs2227276 C T 1410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=4.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=1.146;SOR=0.723 GT:AD:DP:GQ:PL 0/1:88,63:151:99:1439,0,2188 14 50585574 rs10658395 C CA 499.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.438;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.57;ReadPosRankSum=0.892;SOR=0.867 GT:AD:DP:GQ:PL 0/1:40,26:68:99:537,0,751 14 50585589 rs79858475 T G 639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.209;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=5.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.758;SOR=1.444 GT:AD:DP:GQ:PL 0/1:36,27:63:99:668,0,834 14 50605507 rs201957103 T TA 107.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.34;ReadPosRankSum=0.232;SOR=1.244 GT:AD:DP:GQ:PL 0/1:8,9:20:99:145,0,160 14 50616878 rs2229869 G A 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.028;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.4;ReadPosRankSum=-1.493;SOR=0.789 GT:AD:DP:GQ:PL 0/1:66,28:94:99:630,0,1476 14 50704331 rs4901000 C T 4219.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4248,422,0 14 50750577 rs12433038 A G 1046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.109;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=-0.973;SOR=0.927 GT:AD:DP:GQ:PL 0/1:33,43:76:99:1075,0,775 14 50769717 rs2297995 G A 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-0.617;SOR=0.839 GT:AD:DP:GQ:PL 0/1:46,45:91:99:929,0,1040 14 50778816 rs2275591 A C 2567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.552;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.092;SOR=0.608 GT:AD:DP:GQ:PL 0/1:126,108:234:99:2596,0,2940 14 50786004 rs12433794 A G 2571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.803;SOR=0.765 GT:AD:DP:GQ:PL 0/1:110,112:222:99:2600,0,2576 14 50788213 rs2275592 C T 1330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.686;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=1.091;SOR=0.601 GT:AD:DP:GQ:PL 0/1:43,53:96:99:1359,0,1016 14 50798743 rs4901016 G A 1427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-1.174;SOR=0.636 GT:AD:DP:GQ:PL 0/1:70,65:135:99:1456,0,1737 14 50799126 rs7161563 G C 186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.255;ClippingRankSum=-0;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=12.45;ReadPosRankSum=1.087;SOR=0.818 GT:AD:DP:GQ:PL 0/1:9,6:15:99:215,0,350 14 50929508 rs11624731 C A 1520.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1549,156,0 14 50943034 rs76595851 TA T 153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=4.451;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=1.674;QD=4.16;ReadPosRankSum=0.059;SOR=0.264 GT:AD:DP:GQ:PL 0/1:25,12:44:99:182,0,541 14 51057727 rs1060197 G A 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=0.766;SOR=0.749 GT:AD:DP:GQ:PL 0/1:42,67:109:99:1566,0,947 14 51058234 rs2934684 G T 698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=4.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=3.204;SOR=0.239 GT:AD:DP:GQ:PL 0/1:17,32:49:99:727,0,399 14 51107452 rs871643 T C 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.737;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-2.309;SOR=0.987 GT:AD:DP:GQ:PL 0/1:59,49:108:99:1210,0,1362 14 51192659 rs1983764 G A 2109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=2.437;SOR=0.607 GT:AD:DP:GQ:PL 0/1:66,91:157:99:2138,0,1481 14 51204996 rs11376 C T 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.37;SOR=0.435 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1279,0,1358 14 51206021 rs3015485 A G 3330.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.31;SOR=1.54 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3359,299,0 14 51223789 rs2073347 C T 1417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-0.464;SOR=0.677 GT:AD:DP:GQ:PL 0/1:84,60:144:99:1446,0,2062 14 51224374 rs12882191 T G 2190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-0.407;SOR=0.734 GT:AD:DP:GQ:PL 0/1:120,98:218:99:2219,0,2918 14 51224417 rs2236316 G C 2022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.017;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.767;SOR=0.662 GT:AD:DP:GQ:PL 0/1:91,77:168:99:2051,0,2257 14 51237701 rs17793018 A G 3757.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3786,371,0 14 51239067 rs8020503 C G 3984.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4013,423,0 14 51338875 rs11850408 A C 3477.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3506,342,0 14 51368610 rs28564871 A G 1131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.394;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.18;ReadPosRankSum=-0.279;SOR=1.038 GT:AD:DP:GQ:PL 0/1:14,45:59:99:1160,0,229 14 51370784 rs4901064 G C 327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.07;ReadPosRankSum=1.014;SOR=0.653 GT:AD:DP:GQ:PL 0/1:37,17:54:99:356,0,1065 14 51372098 rs3216001 CA C 1338.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.785;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.195;QD=16.13;ReadPosRankSum=0.6;SOR=0.644 GT:AD:DP:GQ:PGT:PID:PL 0/1:48,35:83:99:0|1:51372098_CA_C:1376,0,3153 14 51372103 rs1042266 C G 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.82;ReadPosRankSum=0.61;SOR=0.628 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,36:85:99:0|1:51372098_CA_C:1373,0,3175 14 51378590 rs11356035 CT C 2543.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=2.489;QD=14.13;ReadPosRankSum=1.133;SOR=0.673 GT:AD:DP:GQ:PL 0/1:90,90:180:99:2581,0,2528 14 51382637 rs143759519 G A 2235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.022;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.25;SOR=0.637 GT:AD:DP:GQ:PL 0/1:116,100:216:99:2264,0,2660 14 51383432 rs2075643 G A 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=1.497;SOR=0.78 GT:AD:DP:GQ:PL 0/1:71,74:145:99:1682,0,1661 14 51446216 rs2275462 T G 5437.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5466,518,0 14 51475794 rs2297889 A T 1560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.191;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=4.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-1.093;SOR=1.101 GT:AD:DP:GQ:PL 0/1:80,64:144:99:1589,0,1958 14 51712092 rs4606635 T C 2170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.758;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=0.02;SOR=0.634 GT:AD:DP:GQ:PL 0/1:60,88:148:99:2199,0,1327 14 51716188 rs7161242 T G 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=5.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=1.376;SOR=0.826 GT:AD:DP:GQ:PL 0/1:54,39:93:99:920,0,1426 14 51716467 rs7160810 G A 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.268;SOR=0.9 GT:AD:DP:GQ:PL 0/1:50,51:101:99:1234,0,1236 14 52182081 rs731715 T A 4428.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4457,444,0 14 52186966 rs2277495 G A 8701.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8730,848,0 14 52478315 rs1051069 A G 4973.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5002,530,0 14 52496387 rs2273430 C A 4700.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4729,498,0 14 52496407 rs2273431 C T 3920.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3949,399,0 14 52507429 rs3742536 A G 4162.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4191,425,0 14 52509483 rs56834750 T C 5405.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.68;SOR=1.188 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:52509483_T_C:5434,364,0 14 52509484 rs4901186 G A 5405.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.68;SOR=1.188 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:52509483_T_C:5434,364,0 14 52520368 rs2101919 C T 5723.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5752,558,0 14 52520853 rs904059 A G 5670.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5699,555,0 14 52535648 rs3920038 G T 4813.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4842,474,0 14 52906081 rs2249922 T G 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.266;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=5.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-0.068;SOR=1.176 GT:AD:DP:GQ:PL 0/1:75,53:128:99:1236,0,1793 14 52907353 rs1952254 C T 1397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.089;SOR=0.697 GT:AD:DP:GQ:PL 0/1:68,64:132:99:1426,0,1508 14 52937255 rs7155490 C T 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.838;SOR=0.649 GT:AD:DP:GQ:PL 0/1:67,78:145:99:1805,0,1598 14 52957731 rs369712294 GA G 182.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.33;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0;QD=4.06;ReadPosRankSum=0.547;SOR=0.629 GT:AD:DP:GQ:PL 0/1:30,15:71:99:220,0,701 14 53019944 rs147785041 A G 1960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.229;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-1.317;SOR=0.563 GT:AD:DP:GQ:PL 0/1:84,84:168:99:1989,0,1905 14 53098902 rs762063 G A 2207.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.26;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2236,242,0 14 53120048 rs141108666 GAATTA G 1434.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.013;QD=19.13;ReadPosRankSum=1.633;SOR=0.729 GT:AD:DP:GQ:PL 0/1:37,38:75:99:1472,0,2357 14 53130507 rs17125636 T C 591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=2.012;SOR=0.844 GT:AD:DP:GQ:PL 0/1:17,27:44:99:620,0,377 14 53325090 rs6572868 C T 2528.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2557,264,0 14 53345378 rs2357947 G A 1152.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1181,114,0 14 53513478 rs10599915 AAG A 3921.73 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.1;SOR=1.533 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3959,274,0 14 53518551 rs78491021 AT A 1380.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.018;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-1.172;SOR=0.504 GT:AD:DP:GQ:PL 0/1:61,43:104:99:1418,0,2153 14 53529669 rs4898778 A T 2883.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2912,302,0 14 53619463 rs2358188 G A 8687.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=30.06;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8716,869,0 14 53619480 rs140904345 T TGCCGCC 10747.7 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=47.56;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,226:232:99:10785,731,0 14 53619544 rs2358189 G A 9554.77 PASS AC=2;AF=1;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=28.87;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,331:331:99:9583,987,0 14 54417522 rs17563 A G 2561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.01;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=0.416;SOR=0.649 GT:AD:DP:GQ:PL 0/1:115,105:220:99:2590,0,2774 14 54875514 rs2179896 A G 1680.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=28.01;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1709,179,0 14 55218161 rs2295820 A C 730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.434;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.042;SOR=0.739 GT:AD:DP:GQ:PL 0/1:31,32:63:99:759,0,695 14 55510110 rs17128136 G A 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.294;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=0.221;SOR=0.687 GT:AD:DP:GQ:PL 0/1:120,94:214:99:2235,0,2992 14 55903716 rs45612333 C A 2169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-2.141;SOR=0.731 GT:AD:DP:GQ:PL 0/1:71,95:166:99:2198,0,1605 14 55907172 rs8019270 C G 5955.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.987 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5984,593,0 14 56133942 rs7150285 C T 381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=-1.092;SOR=0.684 GT:AD:DP:GQ:PL 0/1:21,18:39:99:410,0,597 14 57082648 rs2275024 A G 2282.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=1.319 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2311,225,0 14 57099859 rs1041316 G A 2629.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2658,258,0 14 57101682 rs913742 A G 2374.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2403,230,0 14 57676366 rs201870924 T C 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.59;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-1.986;SOR=0.502 GT:AD:DP:GQ:PL 0/1:45,42:87:99:1103,0,1043 14 57938124 rs1152531 C T 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=1.923;SOR=0.765 GT:AD:DP:GQ:PL 0/1:58,53:111:99:1223,0,1535 14 57938260 rs1152530 T C 3022.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3051,291,0 14 57948380 rs1152522 T C 738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=2.112;SOR=0.625 GT:AD:DP:GQ:PL 0/1:25,29:54:99:767,0,549 14 58060862 rs17724076 G A 742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=0.316;SOR=0.7 GT:AD:DP:GQ:PL 0/1:48,35:83:99:771,0,1270 14 58478873 rs3837616 GA G 563.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.748;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-1.206;SOR=1.143 GT:AD:DP:GQ:PL 0/1:21,27:48:99:601,0,482 14 58563694 rs2273442 G C 3130.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.261 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3159,296,0 14 58605790 rs3829765 G A 5450.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5479,537,0 14 58669660 rs75291796 AT A 967.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.59;ReadPosRankSum=1.102;SOR=0.843 GT:AD:DP:GQ:PL 0/1:6,41:47:33:1005,0,33 14 58690427 rs34387083 TA T 134.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.28;ReadPosRankSum=-1.013;SOR=0.648 GT:AD:DP:GQ:PL 0/1:84,21:116:99:163,0,2016 14 58820568 rs17832939 T C 1006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=0.225;SOR=0.582 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1035,0,1158 14 58838668 rs1051860 A G 3158.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.708;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27;ReadPosRankSum=0.527;SOR=0.782 GT:AD:DP:GQ:PL 1/1:2,115:117:99:3187,301,0 14 58838701 rs1051861 C T 2825.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2854,303,0 14 58917454 rs1748971 G A 2026.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.539 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2055,195,0 14 58937416 rs1748986 T C 1416.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1445,138,0 14 58953746 rs1617510 C G 2492.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2521,248,0 14 58954588 rs5808973 T TA 1254.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=2.509;MLEAC=2;MLEAF=1;MQ=60.62;MQRankSum=0.491;QD=24.6;ReadPosRankSum=-0.981;SOR=1.697 GT:AD:DP:GQ:PL 1/1:3,48:51:86:1292,86,0 14 59105188 rs2003021 C T 2520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.59;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=1.106;SOR=0.538 GT:AD:DP:GQ:PL 0/1:125,118:243:99:2549,0,3294 14 59112732 rs17832998 C T 4084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.186;SOR=0.658 GT:AD:DP:GQ:PL 0/1:162,173:335:99:4113,0,3885 14 59781977 rs11347467 CT C 616.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.284;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.43;ReadPosRankSum=0.028;SOR=0.988 GT:AD:DP:GQ:PL 0/1:50,33:83:99:654,0,1243 14 59789892 rs17096074 G T 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.209;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.994;SOR=0.6 GT:AD:DP:GQ:PL 0/1:128,130:258:99:3075,0,3411 14 59797213 rs41285510 G A 1110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.392;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=1.913;SOR=1.04 GT:AD:DP:GQ:PL 0/1:65,45:110:99:1139,0,1568 14 59797235 rs941884 A G 4284.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4313,408,0 14 59797373 rs28927674 G A 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.837;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=5.766;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=0.779;SOR=0.898 GT:AD:DP:GQ:PL 0/1:117,91:208:99:2056,0,2748 14 59798238 rs17096105 G A 2685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=1.518;SOR=0.71 GT:AD:DP:GQ:PL 0/1:103,115:218:99:2714,0,2518 14 59835350 rs41285512 A C 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.809;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.92;SOR=0.703 GT:AD:DP:GQ:PL 0/1:48,43:91:99:1053,0,1141 14 59931840 rs3742645 G T 4181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.026;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.41;SOR=0.578 GT:AD:DP:GQ:PL 0/1:170,178:348:99:4210,0,4009 14 59931931 rs1752428 T G 2838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=8.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.586;SOR=0.381 GT:AD:DP:GQ:PL 0/1:113,120:233:99:2867,0,2848 14 59939727 rs8660 T C 1324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.803;SOR=0.893 GT:AD:DP:GQ:PL 0/1:53,55:108:99:1353,0,1288 14 59965429 rs1271507 T C 486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.498;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-0.392;SOR=0.446 GT:AD:DP:GQ:PL 0/1:18,20:38:99:515,0,438 14 60004844 rs4261431 C T 879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.15;ReadPosRankSum=-0.612;SOR=0.836 GT:AD:DP:GQ:PL 0/1:65,43:108:99:908,0,1599 14 60031996 rs1980580 G A 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.604;SOR=0.646 GT:AD:DP:GQ:PL 0/1:34,44:78:99:1019,0,788 14 60043422 rs4898996 A G 5240.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5269,510,0 14 60063472 rs6573275 A G 2045.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2074,210,0 14 60574539 rs12465 A G 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.085;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.946;SOR=0.605 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1687,0,1915 14 60581673 rs35459418 CT C 1244.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.299;SOR=0.592 GT:AD:DP:GQ:PL 0/1:53,65:118:99:1282,0,1116 14 60581863 rs219314 G A 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.015;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=-0.146;SOR=0.671 GT:AD:DP:GQ:PL 0/1:99,59:158:99:1411,0,2461 14 60581935 rs150687 C T 1730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.285;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.058;SOR=0.949 GT:AD:DP:GQ:PL 0/1:76,68:144:99:1759,0,2178 14 60582053 rs150688 G A 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.194;SOR=0.621 GT:AD:DP:GQ:PL 0/1:84,91:175:99:2181,0,2111 14 60585131 rs308998 A G 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.186;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.289;SOR=0.973 GT:AD:DP:GQ:PL 0/1:62,51:113:99:1340,0,1556 14 60587899 . T TC 53.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.34;ReadPosRankSum=0.334;SOR=0.12 GT:AD:DP:GQ:PL 0/1:16,7:23:91:91,0,332 14 60591829 rs308990 T C 1984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.475;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=-2.1;SOR=0.81 GT:AD:DP:GQ:PL 0/1:73,71:144:99:2013,0,1807 14 60591887 rs167437 G A 1846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.208;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=1.349;SOR=0.618 GT:AD:DP:GQ:PL 0/1:100,80:180:99:1875,0,2412 14 60611675 rs381839 G A 835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.362;SOR=0.798 GT:AD:DP:GQ:PL 0/1:30,38:68:99:864,0,609 14 60616912 rs376945245 G GGCA 98.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.341;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.57;ReadPosRankSum=1.49;SOR=0.544 GT:AD:DP:GQ:PL 0/1:55,8:70:99:136,0,2556 14 60616914 rs201920626 C A 393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.804;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=-1.327;SOR=0.507 GT:AD:DP:GQ:PL 0/1:31,15:65:99:422,0,1849 14 60923783 rs11625921 C T 3588.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.159 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3617,351,0 14 60976501 rs146737847 G A 1717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.527;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=4.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.207;SOR=1.042 GT:AD:DP:GQ:PL 0/1:88,71:159:99:1746,0,2230 14 60976537 rs33912345 C A 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.595;SOR=0.978 GT:AD:DP:GQ:PL 0/1:95,83:178:99:1983,0,2634 14 61180657 rs3742636 T G 5950.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5979,554,0 14 61445967 rs7142228 A G 3621.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3650,348,0 14 61449328 rs976272 T A 4466.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=29.39;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4495,456,0 14 61497147 rs1465146 A T 1839.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=1.43 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1868,186,0 14 61509924 rs2296921 T C 1254.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1283,119,0 14 61747644 rs3196765 A G 3211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.038;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=5.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-1.28;SOR=0.902 GT:AD:DP:GQ:PL 0/1:133,117:250:99:3240,0,3166 14 61997226 rs1088680 C T 6201.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6230,644,0 14 62207557 rs11549465 C T 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.423;SOR=0.564 GT:AD:DP:GQ:PL 0/1:61,68:129:99:1689,0,1571 14 62207613 rs61755645 A T 1940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=0.557;SOR=0.87 GT:AD:DP:GQ:PL 0/1:68,78:146:99:1969,0,1671 14 62462766 rs8019076 T C 1560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.469;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-0.505;SOR=0.612 GT:AD:DP:GQ:PL 0/1:87,65:152:99:1589,0,2114 14 63174616 rs7161127 T C 6191.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.76;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6220,567,0 14 63269317 rs12588427 T C 3686.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3715,387,0 14 63417285 . TA T 535.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0;DP=128;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=2.018;QD=5.25;ReadPosRankSum=-0.993;SOR=0.581 GT:AD:DP:GQ:PL 0/1:66,36:116:99:573,0,1334 14 63749824 rs2273181 G A 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=3.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.395;SOR=0.368 GT:AD:DP:GQ:PL 0/1:27,32:59:99:722,0,674 14 63779846 rs5809192 G GA 1154.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.025;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=0.616;SOR=1.006 GT:AD:DP:GQ:PL 0/1:39,44:83:99:1192,0,995 14 63784407 rs11382440 A AG 7227.73 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=36.5;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,198:198:99:7265,596,0 14 64460536 rs60596461 A AT 564.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.63;ReadPosRankSum=0.421;SOR=0.737 GT:AD:DP:GQ:PL 0/1:41,33:90:99:602,0,750 14 64491695 rs4902264 T C 4464.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4493,431,0 14 64494278 rs10151127 C T 2617.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2646,246,0 14 64494487 rs138272705 C T 1053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.143;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=5.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-1.16;SOR=1.329 GT:AD:DP:GQ:PL 0/1:63,40:103:99:1082,0,1610 14 64496749 rs4027402 C T 3812.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3841,389,0 14 64497930 rs4027404 G A 4095.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4124,407,0 14 64498037 rs4027405 G A 4137.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4166,443,0 14 64519035 rs1890908 A G 4536.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.27;ReadPosRankSum=1.892;SOR=0.268 GT:AD:DP:GQ:PL 1/1:1,154:155:99:4565,424,0 14 64519455 rs3829767 A G 3833.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3862,359,0 14 64522674 rs8010911 G C 3055.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.55;QD=31.18;SOR=1.122 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3084,294,0 14 64522843 rs8010699 A G 4972.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5001,503,0 14 64612845 rs11629287 C T 978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=5.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=-0.691;SOR=0.342 GT:AD:DP:GQ:PL 0/1:56,43:99:99:1007,0,1454 14 64612858 rs10151658 C A 1127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-1.026;SOR=0.409 GT:AD:DP:GQ:PL 0/1:60,49:109:99:1156,0,1531 14 64637147 rs7161192 C A 2132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.706;SOR=0.616 GT:AD:DP:GQ:PL 0/1:113,91:204:99:2161,0,3107 14 64656855 rs2256191 T C 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.091;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=7.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.319;SOR=0.948 GT:AD:DP:GQ:PL 0/1:91,64:155:99:1539,0,2197 14 64681193 rs1152590 C T 1503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=6.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.352;SOR=1.208 GT:AD:DP:GQ:PL 0/1:96,65:161:99:1532,0,2688 14 64686125 rs35648226 G T 1414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=1.004;SOR=0.65 GT:AD:DP:GQ:PL 0/1:55,56:111:99:1443,0,1523 14 64855041 rs1076991 T C 2259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.859;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.337;SOR=0.549 GT:AD:DP:GQ:PL 0/1:84,93:177:99:2288,0,1894 14 64882380 rs1950902 A G 3595.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3624,345,0 14 64908845 rs2236225 G A 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.035;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=3.045;SOR=0.9 GT:AD:DP:GQ:PL 0/1:69,42:111:99:1018,0,1642 14 64935720 rs1256149 C T 4567.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4596,444,0 14 64988830 rs45512391 C A 2688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.206;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=2.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.366;SOR=0.525 GT:AD:DP:GQ:PL 0/1:106,120:226:99:2717,0,2660 14 65008251 rs1063391 C T 2713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.691;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-1.344;SOR=0.598 GT:AD:DP:GQ:PL 0/1:118,118:236:99:2742,0,3298 14 65016702 rs7156953 T G 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.967;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-1.167;SOR=1.24 GT:AD:DP:GQ:PL 0/1:57,38:95:99:1005,0,1370 14 65031534 rs6573560 C T 635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=2.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.22;ReadPosRankSum=-0.864;SOR=0.732 GT:AD:DP:GQ:PL 0/1:53,35:88:99:664,0,1156 14 65031572 rs4902293 A G 524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.377;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=0.909;SOR=0.983 GT:AD:DP:GQ:PL 0/1:36,23:59:99:553,0,793 14 65053999 rs45482504 T C 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.092;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=2.28;SOR=0.779 GT:AD:DP:GQ:PL 0/1:74,62:136:99:1387,0,1736 14 65195794 rs229644 T C 481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=2.008;SOR=0.604 GT:AD:DP:GQ:PL 0/1:32,26:58:99:510,0,761 14 65197415 rs73273530 T C 862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.082;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=1.178;SOR=0.488 GT:AD:DP:GQ:PL 0/1:45,34:79:99:891,0,1095 14 65208026 rs229650 T C 2016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.573;SOR=0.518 GT:AD:DP:GQ:PL 0/1:89,80:169:99:2045,0,2315 14 65209680 rs41301473 A G 910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=0.621;SOR=0.483 GT:AD:DP:GQ:PL 0/1:49,42:91:99:939,0,1319 14 65242044 rs184528 C T 3215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.909;SOR=0.758 GT:AD:DP:GQ:PL 0/1:133,139:272:99:3244,0,3254 14 65260227 rs229591 T G 3860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.977;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.363;SOR=0.559 GT:AD:DP:GQ:PL 0/1:164,140:304:99:3889,0,3957 14 65263300 rs229587 C T 2822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.768;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=4.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-0.595;SOR=0.443 GT:AD:DP:GQ:PL 0/1:88,118:206:99:2851,0,2205 14 65263347 rs229586 C T 2462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.154;SOR=0.802 GT:AD:DP:GQ:PL 0/1:103,109:212:99:2491,0,2489 14 65271650 rs229581 A G 2444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.382;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=-0.098;SOR=0.859 GT:AD:DP:GQ:PL 0/1:82,90:172:99:2473,0,1922 14 65271780 rs2277503 G A 2366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.085;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.121;SOR=0.79 GT:AD:DP:GQ:PL 0/1:95,93:188:99:2395,0,2307 14 65507654 rs45563031 C T 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.12;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.45;SOR=0.513 GT:AD:DP:GQ:PL 0/1:97,79:176:99:1868,0,2752 14 66028446 rs2229677 A G 4168.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4197,407,0 14 67147816 rs3759753 T C 557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.45;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-1.232;SOR=0.334 GT:AD:DP:GQ:PL 0/1:25,27:52:99:586,0,609 14 67646281 rs56264248 A T 847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.482;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.41;ReadPosRankSum=-0.956;SOR=0.809 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,26:55:99:0|1:67646257_G_T:876,0,1151 14 67671293 rs17836680 T C 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.908;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.186;SOR=0.771 GT:AD:DP:GQ:PL 0/1:110,81:191:99:1997,0,2574 14 67675021 rs35680137 C T 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.282;SOR=0.74 GT:AD:DP:GQ:PL 0/1:98,86:184:99:1910,0,2374 14 67759282 rs61744208 C A 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.305;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=1.392;SOR=0.54 GT:AD:DP:GQ:PL 0/1:43,39:82:99:878,0,970 14 67807242 rs33973037 TA T 2006.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.61;ReadPosRankSum=1.162;SOR=0.46 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2044,227,0 14 67849324 rs140127317 C T 1131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.229;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=4.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.53;SOR=1.171 GT:AD:DP:GQ:PL 0/1:58,46:104:99:1160,0,1489 14 67862269 rs34300264 G A 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.762;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=5.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.722;SOR=1.025 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1202,0,1666 14 67878717 rs12888674 A G 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.673;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.23;ReadPosRankSum=-1.286;SOR=1.075 GT:AD:DP:GQ:PL 0/1:50,68:118:99:1943,0,1246 14 67878765 rs115017102 G A 1579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.119;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.857;SOR=0.799 GT:AD:DP:GQ:PL 0/1:87,71:158:99:1608,0,2316 14 68024134 rs3825723 A T 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.526;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.953;SOR=0.88 GT:AD:DP:GQ:PL 0/1:64,68:132:99:1585,0,1338 14 68029313 rs2236235 G A 5354.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5383,498,0 14 68035879 rs3825725 A G 616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=0.387;SOR=0.326 GT:AD:DP:GQ:PL 0/1:38,26:64:99:645,0,1017 14 68041061 rs61534804 G A 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.343;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.032;SOR=0.555 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1733,0,1730 14 68041124 rs1555400 G C 3360.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.95;SOR=1.586 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3389,297,0 14 68042574 rs11158685 A G 2908.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2937,282,0 14 68044005 rs4902492 C T 2320.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=1.577 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2349,216,0 14 68045840 rs10635755 C CTTCT 2918.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.04;QD=47.08;SOR=2.019 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2956,202,0 14 68045935 rs6573781 G A 4321.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.85;QD=28.43;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4350,455,0 14 68046602 rs6573782 C T 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=1.03;SOR=0.458 GT:AD:DP:GQ:PL 0/1:57,55:112:99:1358,0,1487 14 68053802 rs734028 T C 4000.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=1.153 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4029,402,0 14 68234539 rs3742883 T C 5566.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5595,548,0 14 68257352 rs17192170 T A 5900.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5929,612,0 14 68264867 rs12891164 A G 6837.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6866,704,0 14 69259662 rs1051533 C A 4248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=2.487;QD=13.36;ReadPosRankSum=1.014;SOR=0.752 GT:AD:DP:GQ:PL 0/1:160,158:318:99:4277,0,4324 14 69376658 rs743128 A C 2427.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2456,233,0 14 69392264 rs4899272 T G 4347.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4376,438,0 14 69695792 rs3742899 G A 4522.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4551,482,0 14 69703158 rs3211166 A G 1805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.275;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-1.476;SOR=0.709 GT:AD:DP:GQ:PL 0/1:59,68:127:99:1834,0,1314 14 69704553 rs8007859 G T 6991.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.135 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7020,692,0 14 69727194 rs114789616 C A 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.89;SOR=0.767 GT:AD:DP:GQ:PL 0/1:89,88:177:99:1953,0,2146 14 69795199 rs12879377 G A 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.269;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=0.348;SOR=0.801 GT:AD:DP:GQ:PL 0/1:65,83:148:99:1977,0,1422 14 69799892 rs1275677 A G 2326.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.74;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2355,260,0 14 69966850 rs4902723 G A 1436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.96;ReadPosRankSum=1.46;SOR=0.673 GT:AD:DP:GQ:PL 0/1:32,58:90:99:1465,0,735 14 70038786 rs7142060 A G 6390.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6419,600,0 14 70039587 rs7147881 C T 7442.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7471,738,0 14 70039803 rs71794754 CGCGGCG C 6582.73 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.37;QD=43.02;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,153:158:99:6620,465,0 14 70039881 rs4902734 C G 6229.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.97;QD=31.46;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6258,593,0 14 70040223 rs6573892 A G 7744.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.069 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7773,759,0 14 70418881 rs3742909 G A 1703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.716;SOR=1.052 GT:AD:DP:GQ:PL 0/1:81,68:149:99:1732,0,2079 14 70477508 rs3825739 C T 1870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.1;SOR=1.043 GT:AD:DP:GQ:PL 0/1:90,77:167:99:1899,0,2342 14 70478183 rs57609901 C A 1989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=12.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=27.26;ReadPosRankSum=-0.339;SOR=1.037 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,55:73:99:0|1:70478173_CA_C:2018,0,1120 14 70515779 rs61977411 G A 800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=1.487;SOR=0.693 GT:AD:DP:GQ:PL 0/1:40,31:71:99:829,0,1050 14 70634087 rs2114024 A G 4531.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4560,450,0 14 70634801 rs17765575 T C 2031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.383;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=5.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.285;SOR=1.017 GT:AD:DP:GQ:PL 0/1:103,87:190:99:2060,0,2360 14 70924237 rs3751520 C A 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.054;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.5;MQ=55.06;MQRankSum=-11.959;QD=6.34;ReadPosRankSum=-0.954;SOR=0.532 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,35:154:99:0|1:70924237_C_A:1004,0,7069 14 70924249 rs3751521 A G 959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.882;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.5;MQ=55.36;MQRankSum=-11.985;QD=6.19;ReadPosRankSum=-0.363;SOR=0.799 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,33:155:99:0|1:70924237_C_A:988,0,7092 14 70924462 rs3751523 A G 7542.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.16;QD=32.65;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7571,693,0 14 70924501 rs8010994 C G 8027.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.61;QD=39.35;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,204:204:99:8056,613,0 14 70924507 rs3751524 A C 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.156;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=4.864;MLEAC=1;MLEAF=0.5;MQ=50.9;MQRankSum=-0.909;QD=13.47;ReadPosRankSum=3.246;SOR=0.681 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2723,0,2444 14 70924852 rs3829455 A C 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.878;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.141;MLEAC=1;MLEAF=0.5;MQ=51.69;MQRankSum=-10.679;QD=10.28;ReadPosRankSum=1.113;SOR=0.832 GT:AD:DP:GQ:PL 0/1:86,54:140:99:1467,0,2226 14 70925257 rs12436346 A G 2215.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.71;QD=36.32;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2244,183,0 14 70925818 rs2022624 T C 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=8.511;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=28.813;MLEAC=1;MLEAF=0.5;MQ=45.75;MQRankSum=-7.531;QD=9.59;ReadPosRankSum=-1.454;SOR=2.407 GT:AD:DP:GQ:PL 0/1:81,36:117:99:1150,0,2134 14 71109153 rs4902834 C G 3018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.185;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=7.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=1.988;SOR=0.388 GT:AD:DP:GQ:PL 0/1:112,111:223:99:3047,0,2836 14 71227913 rs3814872 A C 2277.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2306,228,0 14 71275773 rs3832971 GCCT G 540.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=3.207;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=3.651;QD=2.57;ReadPosRankSum=-0.885;SOR=1.021 GT:AD:DP:GQ:PL 0/1:171,39:210:99:578,0,6780 14 71374702 rs2526882 G A 1908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.875;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.941;SOR=0.986 GT:AD:DP:GQ:PL 0/1:88,79:167:99:1937,0,2639 14 71444788 rs3814871 G A 1982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.593;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=1.178;SOR=0.564 GT:AD:DP:GQ:PL 0/1:71,72:143:99:2011,0,1639 14 72055468 rs1859643 A C 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.184;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.111;SOR=0.744 GT:AD:DP:GQ:PL 0/1:95,83:178:99:2028,0,2282 14 72085462 rs146845417 AT A 1352.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.096;QD=11.37;ReadPosRankSum=-0.259;SOR=0.879 GT:AD:DP:GQ:PL 0/1:64,55:119:99:1390,0,1725 14 72117156 rs8017465 T C 3409.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3438,329,0 14 72201985 rs2097887 C A 398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=0.358;SOR=1.009 GT:AD:DP:GQ:PL 0/1:27,19:46:99:427,0,728 14 73008178 rs11628539 A T 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=4.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=0.525;SOR=1.096 GT:AD:DP:GQ:PL 0/1:77,84:161:99:1977,0,1759 14 73198506 rs6574094 T C 1939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.08;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=5.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-1.248;SOR=1.092 GT:AD:DP:GQ:PL 0/1:106,81:187:99:1968,0,2526 14 73358945 rs11158986 A C 4447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.054;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.961;SOR=0.802 GT:AD:DP:GQ:PL 0/1:178,186:364:99:4476,0,4086 14 73412635 rs17856582 A C 2216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.001;SOR=0.881 GT:AD:DP:GQ:PL 0/1:91,91:182:99:2245,0,2388 14 73421186 rs17856583 C T 3392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=1.747;SOR=0.721 GT:AD:DP:GQ:PL 0/1:106,141:247:99:3421,0,2534 14 73440864 rs12931 C T 5449.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5478,558,0 14 73459917 rs2333016 C T 3300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.612;SOR=0.639 GT:AD:DP:GQ:PL 0/1:119,146:265:99:3329,0,2850 14 73465003 rs997667 A G 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.486;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.36;ReadPosRankSum=-1.129;SOR=0.74 GT:AD:DP:GQ:PL 0/1:60,44:104:99:1002,0,1439 14 73465027 rs5809599 C CAA 145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.46;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.05;ReadPosRankSum=-1.221;SOR=0.578 GT:AD:DP:GQ:PL 0/1:29,7:63:99:174,0,1434 14 73490859 rs45476195 C T 2235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.228;SOR=0.686 GT:AD:DP:GQ:PL 0/1:119,97:216:99:2264,0,3069 14 73491173 rs76065771 C A 2438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.338;SOR=0.49 GT:AD:DP:GQ:PL 0/1:103,108:211:99:2467,0,2496 14 73600346 rs1800842 C CTGTCCTGGGTGCA 3509.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.065;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.029;QD=20.29;ReadPosRankSum=1.783;SOR=0.819 GT:AD:DP:GQ:PL 0/1:88,85:173:99:3547,0,5040 14 73664853 rs165932 G T 699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.331;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=1.944;SOR=0.636 GT:AD:DP:GQ:PL 0/1:32,32:64:99:728,0,704 14 73706541 rs202232594 G A 3521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.11;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=1.295;SOR=0.778 GT:AD:DP:GQ:PL 0/1:150,154:304:99:3550,0,3681 14 73717720 rs741842 G A 4127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.463;SOR=0.713 GT:AD:DP:GQ:PL 0/1:149,184:333:99:4156,0,3392 14 73727509 rs177389 T G 3846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.12;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=2.01;SOR=0.687 GT:AD:DP:GQ:PL 0/1:131,151:282:99:3875,0,3007 14 73957772 rs10144469 A G 3247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.535;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.236;SOR=0.656 GT:AD:DP:GQ:PL 0/1:139,127:266:99:3276,0,3304 14 73957981 rs150704374 G GC 13428.7 PASS AC=2;AF=1;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.03;QD=37.2;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,361:361:99:13466,1086,0 14 73958375 rs758109 T C 3468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.609;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=6.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=2.984;SOR=1.057 GT:AD:DP:GQ:PL 0/1:142,119:261:99:3497,0,3581 14 73963383 rs8014577 T C 323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.524;SOR=1.445 GT:AD:DP:GQ:PL 0/1:12,15:27:99:352,0,306 14 73989859 rs1074501 C T 1823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.856;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.196;SOR=0.763 GT:AD:DP:GQ:PL 0/1:86,74:160:99:1852,0,1990 14 74041748 rs149033118 A G 472.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.586;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=90.987;MLEAC=1;MLEAF=0.5;MQ=43.38;MQRankSum=-7.181;QD=1.78;ReadPosRankSum=-0.018;SOR=7.064 GT:AD:DP:GQ:PL 0/1:230,35:265:99:501,0,5574 14 74060508 rs35724886 C A 3251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.17;ReadPosRankSum=1.603;SOR=0.873 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,84:179:99:0|1:74060508_C_A:3280,0,14399 14 74060511 . T TTCAA 3370.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.393;ClippingRankSum=0;DP=179;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.83;ReadPosRankSum=1.233;SOR=0.931 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,86:179:99:0|1:74060508_C_A:3408,0,14346 14 74060513 rs375801976 GCTTA G 3364.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.859;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=6.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.49;ReadPosRankSum=0.901;SOR=0.988 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,87:182:99:0|1:74060508_C_A:3402,0,14489 14 74061968 rs2010070 T C 2855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.939;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.62;SOR=0.806 GT:AD:DP:GQ:PL 0/1:117,111:228:99:2884,0,2815 14 74086415 rs17782052 G A 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-1.38;SOR=0.739 GT:AD:DP:GQ:PL 0/1:101,76:177:99:1811,0,2873 14 74121531 . CT C 103.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.008;ClippingRankSum=0;DP=88;ExcessHet=3.0103;FS=7.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.57;ReadPosRankSum=-1.453;SOR=1.609 GT:AD:DP:GQ:PL 0/1:53,13:85:99:141,0,1336 14 74185596 rs9652296 C T 3139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=-0.46;SOR=0.7 GT:AD:DP:GQ:PL 0/1:193,139:332:99:3168,0,5084 14 74193427 rs887508 A G 5330.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.54;ReadPosRankSum=-0.682;SOR=0.61 GT:AD:DP:GQ:PL 1/1:1,168:169:99:5359,463,0 14 74196686 rs2075025 T C 4270.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4299,413,0 14 74203789 rs17782124 G A 3448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=-0.166;SOR=0.769 GT:AD:DP:GQ:PL 0/1:110,135:245:99:3477,0,2782 14 74205878 rs17782128 C T 4220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=5.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.415;SOR=0.666 GT:AD:DP:GQ:PL 0/1:171,168:339:99:4249,0,4491 14 74206481 rs758774 T C 8414.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.62;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,258:258:99:8443,774,0 14 74206658 rs758773 G A 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=-0.095;SOR=0.816 GT:AD:DP:GQ:PL 0/1:139,96:235:99:2185,0,3669 14 74340797 rs11159042 A T 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.53;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=5.416;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.696;SOR=0.831 GT:AD:DP:GQ:PL 0/1:68,59:127:99:1364,0,1473 14 74340927 rs75892130 A G 1034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.614;SOR=0.514 GT:AD:DP:GQ:PL 0/1:34,47:81:99:1063,0,712 14 74388908 rs1127392 T C 1148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=0.067;SOR=0.481 GT:AD:DP:GQ:PL 0/1:89,53:142:99:1177,0,2332 14 74402693 rs17182699 C T 1722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.371;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.839;SOR=0.686 GT:AD:DP:GQ:PL 0/1:90,74:164:99:1751,0,2054 14 74404756 rs28927675 T C 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.849;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.892;SOR=0.924 GT:AD:DP:GQ:PL 0/1:100,88:188:99:2097,0,2249 14 74413129 rs7146634 C G 2443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.945;SOR=0.831 GT:AD:DP:GQ:PL 0/1:124,102:226:99:2472,0,3262 14 74424938 rs3180946 T C 1781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.82;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-1.397;SOR=0.539 GT:AD:DP:GQ:PL 0/1:85,73:158:99:1810,0,1878 14 74428286 rs7141392 A G 1009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=8.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-2.224;SOR=1.439 GT:AD:DP:GQ:PL 0/1:55,43:98:99:1038,0,1431 14 74428445 rs8500 G A 1084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=7.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-1.987;SOR=1.404 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1113,0,1401 14 74441684 rs2074932 G A 786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=-0.264;SOR=0.469 GT:AD:DP:GQ:PL 0/1:48,36:84:99:815,0,1178 14 74444090 rs201751093 G GA 114.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.002;QD=4.59;ReadPosRankSum=0.604;SOR=0.914 GT:AD:DP:GQ:PL 0/1:16,9:34:99:152,0,322 14 74454819 rs12434581 T A 2320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.135;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.29;SOR=0.661 GT:AD:DP:GQ:PL 0/1:97,102:199:99:2349,0,2214 14 74711883 rs35435463 C T 2546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.822;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=2.764;SOR=0.83 GT:AD:DP:GQ:PL 0/1:95,115:210:99:2575,0,2218 14 74874540 rs11621669 A G 2142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.768;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=4.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.138;SOR=0.672 GT:AD:DP:GQ:PL 0/1:90,87:177:99:2171,0,2497 14 74874707 rs2884545 A G 1934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.757;SOR=0.569 GT:AD:DP:GQ:PL 0/1:89,82:171:99:1963,0,2238 14 74876181 rs12590672 T G 2463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.885;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=0.811;SOR=0.575 GT:AD:DP:GQ:PL 0/1:100,93:193:99:2492,0,2414 14 75078270 rs140842900 G A 3699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.411;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=-0.604;SOR=0.763 GT:AD:DP:GQ:PL 0/1:124,140:264:99:3728,0,3365 14 75248652 rs45617140 C G 3840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.361;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.903;SOR=0.775 GT:AD:DP:GQ:PL 0/1:156,150:306:99:3869,0,3918 14 75276079 rs957345 C G 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.06;ReadPosRankSum=0.494;SOR=0.588 GT:AD:DP:GQ:PL 0/1:52,75:127:99:2195,0,1412 14 75279395 rs2302834 T A 1997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.171;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.664;SOR=0.784 GT:AD:DP:GQ:PL 0/1:99,84:183:99:2026,0,2345 14 75359670 rs2230237 G A 2135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.301;SOR=0.641 GT:AD:DP:GQ:PL 0/1:97,94:191:99:2164,0,2433 14 75360066 rs142872233 C T 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.72;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=5.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.698;SOR=0.429 GT:AD:DP:GQ:PL 0/1:81,102:183:99:2322,0,1825 14 75365062 rs2080087 A G 2112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.812;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.03;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=-0.304;SOR=0.954 GT:AD:DP:GQ:PL 0/1:68,76:144:99:2141,0,1525 14 75367807 rs20578 C T 1595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=1.071;SOR=0.674 GT:AD:DP:GQ:PL 0/1:92,72:164:99:1624,0,2333 14 75386530 rs60425478 T TGG 1364.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.157;QD=8.75;ReadPosRankSum=2.718;SOR=0.832 GT:AD:DP:GQ:PL 0/1:101,55:178:99:1402,0,3480 14 75386576 rs2286913 G A 2798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.839;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-1.507;QD=13.08;ReadPosRankSum=1.91;SOR=0.557 GT:AD:DP:GQ:PL 0/1:100,114:214:99:2827,0,2488 14 75388183 rs7156590 C T 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.267;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-1.389;SOR=0.6 GT:AD:DP:GQ:PL 0/1:97,90:187:99:2303,0,2247 14 75412908 rs8005277 A G 5589.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=1.05 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5618,561,0 14 75415194 rs2159907 G C 2392.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2421,252,0 14 75483812 rs13712 T C 1672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.747;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.307;SOR=0.835 GT:AD:DP:GQ:PL 0/1:89,65:154:99:1701,0,2050 14 75513828 rs175080 G A 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=7.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.231;SOR=1.414 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1345,0,1388 14 75513883 rs175081 T C 2958.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2987,273,0 14 75535927 rs175499 G A 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.346;SOR=0.689 GT:AD:DP:GQ:PL 0/1:89,95:184:99:2235,0,2191 14 75537381 rs11546525 C T 2693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.617;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.302;SOR=0.644 GT:AD:DP:GQ:PL 0/1:136,111:247:99:2722,0,3299 14 75538217 rs3742778 G T 3067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=3.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.628;SOR=0.955 GT:AD:DP:GQ:PL 0/1:111,117:228:99:3096,0,2746 14 75551254 rs175487 C T 4585.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4614,450,0 14 75574087 rs10146482 C T 1221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.071;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.73;ReadPosRankSum=0.809;SOR=0.688 GT:AD:DP:GQ:PL 0/1:98,60:158:99:1250,0,2421 14 75590822 rs8017642 G A 938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=0.391;SOR=0.647 GT:AD:DP:GQ:PL 0/1:56,42:98:99:967,0,1388 14 75590846 rs175449 A T 1349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15;ReadPosRankSum=-0.316;SOR=0.66 GT:AD:DP:GQ:PL 0/1:36,54:90:99:1378,0,787 14 75590896 rs143597394 C T 1237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.165;SOR=0.65 GT:AD:DP:GQ:PL 0/1:43,52:95:99:1266,0,1047 14 75746690 rs1046117 C T 3771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.585;SOR=0.634 GT:AD:DP:GQ:PL 0/1:183,163:346:99:3800,0,4357 14 76045362 rs2287015 T C 2905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.322;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=1.876;SOR=0.728 GT:AD:DP:GQ:PL 0/1:87,113:200:99:2934,0,1933 14 76045858 rs2287016 G A 2610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.157;SOR=0.637 GT:AD:DP:GQ:PL 0/1:106,107:213:99:2639,0,2637 14 76045963 rs2287017 C G 1838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.445;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-1.355;SOR=0.981 GT:AD:DP:GQ:PL 0/1:78,71:149:99:1867,0,1778 14 76156609 rs2303345 C T 2105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-0.716;SOR=0.601 GT:AD:DP:GQ:PL 0/1:88,96:184:99:2134,0,2189 14 76232398 rs2359870 T C 3305.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=1.993 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3334,300,0 14 76249524 rs146036604 A C 1916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=3.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.387;SOR=0.622 GT:AD:DP:GQ:PL 0/1:79,81:160:99:1945,0,1915 14 76368544 rs1133834 T C 1636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=2.07;SOR=0.963 GT:AD:DP:GQ:PL 0/1:88,73:161:99:1665,0,1957 14 76425047 rs199646113 TA T 193.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.9;ReadPosRankSum=-0.67;SOR=0.491 GT:AD:DP:GQ:PL 0/1:81,21:130:99:222,0,1740 14 76524970 rs59989662 CT C 908.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.937;QD=9.27;ReadPosRankSum=-0.354;SOR=0.445 GT:AD:DP:GQ:PL 0/1:48,50:105:99:946,0,1090 14 76543004 rs17783366 G A 1573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.65;ReadPosRankSum=-2.159;SOR=0.846 GT:AD:DP:GQ:PL 0/1:107,75:182:99:1602,0,2613 14 76957887 rs2361293 T C 7967.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7996,768,0 14 77236380 rs3815550 C T 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.77;ReadPosRankSum=-0.89;SOR=0.715 GT:AD:DP:GQ:PL 0/1:121,83:204:99:1817,0,2949 14 77239567 rs2075772 A G 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.06;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.958;SOR=0.539 GT:AD:DP:GQ:PL 0/1:69,83:152:99:1917,0,1472 14 77304334 rs12887319 G A 1070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.044;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=0.963;SOR=0.685 GT:AD:DP:GQ:PL 0/1:30,47:77:99:1099,0,572 14 77319773 . GGTGT G,GGTGTGTGTGT 2096.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=8.122;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.52;MQRankSum=0.644;QD=32.76;ReadPosRankSum=-0.047;SOR=1.026 GT:AD:DP:GQ:PL 1/2:5,34,25:100:99:2134,735,1363,1339,0,1392 14 77332367 rs1882844 C T 3331.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.31;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3360,365,0 14 77492891 rs879027 G A 3044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.232;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=1.713;SOR=0.556 GT:AD:DP:GQ:PL 0/1:119,116:235:99:3073,0,2879 14 77493761 rs200317113 TTGCTGC T 1671.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.133;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=11.958;MLEAC=1;MLEAF=0.5;MQ=61.72;MQRankSum=-2.483;QD=11.69;ReadPosRankSum=0.519;SOR=1.518 GT:AD:DP:GQ:PL 0/1:79,64:146:99:1709,0,3191 14 77493788 rs28692724 C T 2200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.25;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=10.567;MLEAC=1;MLEAF=0.5;MQ=61.7;MQRankSum=2.183;QD=15.5;ReadPosRankSum=0.537;SOR=0.253 GT:AD:DP:GQ:PL 0/1:80,62:147:99:2229,0,3233 14 77493791 rs377151545 CTGT C 2128.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=10.595;MLEAC=1;MLEAF=0.5;MQ=61.55;MQRankSum=0.006;QD=14.19;ReadPosRankSum=1.804;SOR=0.265 GT:AD:DP:GQ:PL 0/1:90,60:150:99:2166,0,3594 14 77493875 rs71428775 T C 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.898;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=0.635;SOR=0.482 GT:AD:DP:GQ:PL 0/1:61,66:127:99:1818,0,1753 14 77697967 rs375566 A G 5482.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5511,567,0 14 77703057 rs403291 A G 1218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=1.357;SOR=0.752 GT:AD:DP:GQ:PL 0/1:54,51:105:99:1247,0,1304 14 77708804 rs61731611 C T 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=0.843;SOR=0.857 GT:AD:DP:GQ:PL 0/1:123,96:219:99:2113,0,3073 14 77734840 . C T 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.002;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.674;SOR=0.774 GT:AD:DP:GQ:PL 0/1:80,77:157:99:1901,0,2071 14 77745193 rs3209079 A C 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.656;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.002;SOR=0.693 GT:AD:DP:GQ:PL 0/1:98,76:174:99:1813,0,2294 14 77751925 rs2270419 C T 4047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.87;ClippingRankSum=0;DB;DP=360;ExcessHet=3.0103;FS=0.382;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0.983;QD=11.31;ReadPosRankSum=-0.968;SOR=0.736 GT:AD:DP:GQ:PL 0/1:175,183:358:99:4076,0,4087 14 77793207 rs7975 G A 785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.059;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.817;SOR=0.563 GT:AD:DP:GQ:PL 0/1:39,36:75:99:814,0,890 14 77794283 rs1046428 T C 1070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.179;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=-0.666;SOR=0.686 GT:AD:DP:GQ:PL 0/1:67,49:116:99:1099,0,1507 14 77796641 rs731346 G A 1971.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=1.211 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2000,207,0 14 77843353 rs10141317 G T 833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.89;ReadPosRankSum=0.737;SOR=1.111 GT:AD:DP:GQ:PL 0/1:79,42:121:99:862,0,2022 14 77843368 rs182573253 G T 735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.75;ReadPosRankSum=-0.02;SOR=1.021 GT:AD:DP:GQ:PL 0/1:71,38:109:99:764,0,1809 14 77843384 rs3742737 G T 593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.32;ReadPosRankSum=-0.516;SOR=1.088 GT:AD:DP:GQ:PL 0/1:63,31:94:99:622,0,1751 14 77843814 rs11844594 T C 1802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.489;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.472;SOR=0.637 GT:AD:DP:GQ:PL 0/1:81,76:157:99:1831,0,1929 14 77844869 rs4903576 A G 2531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.853;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.73;ReadPosRankSum=-1.06;SOR=0.901 GT:AD:DP:GQ:PL 0/1:68,93:161:99:2560,0,1518 14 77845121 rs2193595 A G 1663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.513;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.657;SOR=0.593 GT:AD:DP:GQ:PL 0/1:74,64:138:99:1692,0,1757 14 77926011 rs1061629 C T 2136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.406;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=5.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=1.663;SOR=0.541 GT:AD:DP:GQ:PL 0/1:95,93:188:99:2165,0,2173 14 77928525 rs1061638 A G 2842.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2871,276,0 14 77931034 rs61755659 A G 854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.812;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-1.086;SOR=1.273 GT:AD:DP:GQ:PL 0/1:58,36:94:99:883,0,1352 14 77932017 rs7146595 A C 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=0.233;SOR=0.466 GT:AD:DP:GQ:PL 0/1:52,65:117:99:1609,0,1259 14 77935520 rs7250 G A 3095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.725;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.325;SOR=0.601 GT:AD:DP:GQ:PL 0/1:121,143:264:99:3124,0,2858 14 77951124 rs3742728 C T 3015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.335;SOR=0.696 GT:AD:DP:GQ:PL 0/1:126,121:247:99:3044,0,3142 14 78028803 rs2364602 A G 3916.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3945,411,0 14 78140355 rs6494 T A 2413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.335;SOR=0.753 GT:AD:DP:GQ:PL 0/1:146,115:261:99:2442,0,3558 14 78161131 rs17825440 C T 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-1.053;SOR=0.711 GT:AD:DP:GQ:PL 0/1:62,54:116:99:1170,0,1479 14 78174473 rs11159286 A C 4270.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.85;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4299,390,0 14 78184566 rs176960 C A 4894.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4923,486,0 14 78184661 rs17825620 T G 1273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=1.24;SOR=0.652 GT:AD:DP:GQ:PL 0/1:98,62:160:99:1302,0,2359 14 78197365 rs114763 C T 1484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.651;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=1.254;SOR=0.894 GT:AD:DP:GQ:PL 0/1:72,68:140:99:1513,0,1968 14 78234796 rs8015313 C T 444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.96;MQRankSum=-0.764;QD=6.26;ReadPosRankSum=-1.042;SOR=0.796 GT:AD:DP:GQ:PL 0/1:47,24:71:99:473,0,1263 14 78285461 rs3214433 GT G 6092.73 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.36;QD=29.43;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6130,622,0 14 78365612 rs2287650 C T 1832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.587;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.002;SOR=0.886 GT:AD:DP:GQ:PL 0/1:84,78:162:99:1861,0,1916 14 78710044 rs11626446 G A 1952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=0.395;SOR=0.799 GT:AD:DP:GQ:PL 0/1:127,88:215:99:1981,0,3118 14 79181226 rs1004212 C T 2556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.322;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.364;SOR=0.818 GT:AD:DP:GQ:PL 0/1:107,101:208:99:2585,0,2673 14 80669639 rs5809986 T TA 152.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.113;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=1.021;QD=2.28;ReadPosRankSum=0.873;SOR=0.545 GT:AD:DP:GQ:PL 0/1:48,19:96:99:190,0,1344 14 80993330 rs34838656 G GA 857.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;MQRankSum=0.349;QD=23.18;ReadPosRankSum=-1.501;SOR=1.432 GT:AD:DP:GQ:PL 1/1:2,35:39:68:895,68,0 14 81362142 rs11371676 G GAAAA 544.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.15;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0.832;QD=17.02;ReadPosRankSum=-0.723;SOR=0.504 GT:AD:DP:GQ:PL 0/1:18,14:47:99:582,0,1004 14 81382845 rs7160694 C A 1305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.24;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.328;SOR=0.646 GT:AD:DP:GQ:PL 0/1:64,58:122:99:1334,0,1467 14 81558965 rs2241119 A G 1233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-0.549;SOR=0.534 GT:AD:DP:GQ:PL 0/1:52,56:108:99:1262,0,1255 14 81562998 rs2075179 T C 1593.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.93;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.36;ReadPosRankSum=0.892;SOR=0.556 GT:AD:DP:GQ:PL 0/1:41,70:111:99:1622,0,856 14 81610583 rs1991517 G C 2462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.122;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.089;QD=11.73;ReadPosRankSum=-0.602;SOR=0.553 GT:AD:DP:GQ:PL 0/1:113,97:210:99:2491,0,2956 14 81728288 . TA T 1071.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.323;ClippingRankSum=0;DP=161;ExcessHet=3.0103;FS=4.723;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.599;QD=11.52;ReadPosRankSum=1.885;SOR=1.136 GT:AD:DP:GQ:PL 0/1:36,57:142:99:1109,0,556 14 81737076 rs2241621 A C 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.695;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-1.557;SOR=0.765 GT:AD:DP:GQ:PL 0/1:81,84:165:99:2209,0,2037 14 81744736 rs3813535 A G 2427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.359;SOR=0.871 GT:AD:DP:GQ:PL 0/1:83,98:181:99:2456,0,1929 14 86088056 rs10141266 T C 6713.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6742,671,0 14 88400353 rs412915 C T 964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.227;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.307;SOR=1.095 GT:AD:DP:GQ:PL 0/1:50,36:86:99:993,0,1333 14 88401213 rs421262 T C 2840.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2869,297,0 14 88407734 rs448805 G C 2512.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.5;SOR=1.318 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2541,203,0 14 88407875 rs421466 T A 2190.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2219,219,0 14 88407888 rs398607 A G 1264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.76;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.33;ReadPosRankSum=-1.1;SOR=0.766 GT:AD:DP:GQ:PL 0/1:20,49:69:99:1293,0,464 14 88407917 rs12432149 G A 490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.344;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.05;ReadPosRankSum=0.447;SOR=0.965 GT:AD:DP:GQ:PL 0/1:40,21:61:99:519,0,978 14 88411947 rs367327 T C 3271.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3300,339,0 14 88414211 rs398076 G A 863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.64;ReadPosRankSum=-0.069;SOR=0.561 GT:AD:DP:GQ:PL 0/1:60,40:100:99:892,0,1609 14 88417095 rs11300320 GA G 1181.73 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=25.14;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1219,146,0 14 88442712 rs34362748 C T 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.492;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=2.698;SOR=0.656 GT:AD:DP:GQ:PL 0/1:53,54:107:99:1169,0,1354 14 88454469 rs74337989 A T 824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.067;SOR=0.548 GT:AD:DP:GQ:PL 0/1:37,36:73:99:853,0,872 14 88459434 rs111976362 G T 2609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.735;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-1.22;SOR=0.695 GT:AD:DP:GQ:PL 0/1:106,104:210:99:2638,0,2915 14 88459448 rs111887056 C G 2817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.047;SOR=0.581 GT:AD:DP:GQ:PL 0/1:113,108:221:99:2846,0,3222 14 88459467 rs112992946 C G 2791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.27;SOR=0.655 GT:AD:DP:GQ:PL 0/1:115,113:228:99:2820,0,3181 14 88477413 rs6574978 C T 1011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-2.695;SOR=0.699 GT:AD:DP:GQ:PL 0/1:59,44:103:99:1040,0,1505 14 88651962 rs17762463 C T 2058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.531;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=9.448;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=2.162;QD=10.67;ReadPosRankSum=-1.332;SOR=0.768 GT:AD:DP:GQ:PL 0/1:103,90:193:99:2087,0,2380 14 88658764 rs12898054 G C 1085.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=3.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=0.703;SOR=1.125 GT:AD:DP:GQ:PL 0/1:39,40:79:99:1114,0,1092 14 88792816 rs3742690 T G 2135.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2164,224,0 14 88862529 rs3179969 G A 1862.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1891,195,0 14 88935925 rs2297129 A G 5431.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5460,554,0 14 88936254 rs2297128 A G 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.553;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.472;SOR=0.766 GT:AD:DP:GQ:PL 0/1:71,56:127:99:1306,0,1695 14 88938652 rs2274736 A G 2349.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2378,227,0 14 88945407 rs3825676 C G 3921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.431;SOR=0.651 GT:AD:DP:GQ:PL 0/1:172,168:340:99:3950,0,4272 14 88945591 rs879932 A G 11488.8 PASS AC=2;AF=1;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,381:381:99:11517,1142,0 14 88946053 rs28617592 G T 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.846;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=13.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=1.551;SOR=1.663 GT:AD:DP:GQ:PL 0/1:114,88:202:99:2866,0,3574 14 88946622 rs2401751 G A 5174.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5203,504,0 14 89037482 rs10682918 C CAT 2570.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=3.049;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=36.72;ReadPosRankSum=1.141;SOR=0.122 GT:AD:DP:GQ:PL 1/1:2,68:77:99:2608,158,0 14 89042180 rs1469602 T G 2661.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=1.347 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2690,251,0 14 89063167 rs2297124 A G 2895.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2924,299,0 14 89087278 rs201884924 TA T 354.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.63;ReadPosRankSum=-0.484;SOR=0.661 GT:AD:DP:GQ:PL 0/1:40,23:109:99:392,0,903 14 89205265 rs17188228 T C 1469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.176;SOR=0.588 GT:AD:DP:GQ:PL 0/1:67,65:132:99:1498,0,1595 14 90651357 rs12147332 G A 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.329;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=10.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.203;SOR=1.467 GT:AD:DP:GQ:PL 0/1:84,60:144:99:1364,0,2052 14 90730071 rs4811 C T 3170.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.05;QD=30.78;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3199,309,0 14 90756760 rs3742671 A T 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=1.933;SOR=0.91 GT:AD:DP:GQ:PL 0/1:70,83:153:99:2110,0,1767 14 90767607 rs3825661 C T 1511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.53;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.873;SOR=0.499 GT:AD:DP:GQ:PL 0/1:79,70:149:99:1540,0,1931 14 91007944 rs145392805 CAG C 148.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=7.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.43;ReadPosRankSum=1.304;SOR=0.163 GT:AD:DP:GQ:PL 0/1:91,13:104:99:186,0,3122 14 91123575 rs3742660 T C 4727.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.22;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.81;ReadPosRankSum=-0.526;SOR=0.395 GT:AD:DP:GQ:PL 1/1:1,169:170:99:4756,467,0 14 91161862 rs10146731 C T 582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=6.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=0.504;SOR=0.768 GT:AD:DP:GQ:PL 0/1:38,28:66:99:611,0,939 14 91360733 rs77438853 G GT 1739.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.897;QD=13.59;ReadPosRankSum=0.165;SOR=0.726 GT:AD:DP:GQ:PL 0/1:69,59:128:99:1777,0,2194 14 91636395 rs4900071 C T 4172.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.069 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4201,422,0 14 91636532 rs4900072 C T 5938.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5967,620,0 14 91681888 rs34424078 G A 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=7.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.801;SOR=0.983 GT:AD:DP:GQ:PL 0/1:120,108:228:99:2677,0,3061 14 91739081 rs941920 A G 9288.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9317,891,0 14 91763637 rs3742656 C T 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=0.509;SOR=0.66 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1575,0,2106 14 91773568 rs1970912 T C 2077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.821;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.13;ReadPosRankSum=-1.132;SOR=0.732 GT:AD:DP:GQ:PL 0/1:67,80:147:99:2106,0,1484 14 91883967 rs3742654 G T 772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=1.757;SOR=0.45 GT:AD:DP:GQ:PL 0/1:62,35:97:99:801,0,1569 14 91927717 rs8006817 G A 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=1.167;SOR=0.922 GT:AD:DP:GQ:PL 0/1:61,54:115:99:1341,0,1645 14 91942318 rs139615837 C CA 1694.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.43;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-0.668;SOR=0.599 GT:AD:DP:GQ:PL 0/1:60,71:131:99:1732,0,1254 14 92084004 rs1620238 C G 2178.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2207,213,0 14 92088016 rs1296082 G A 2738.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2767,285,0 14 92189548 rs35078318 G GA 467.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=-1.886;SOR=0.561 GT:AD:DP:GQ:PL 0/1:34,26:63:99:505,0,638 14 92258905 . T TA 65.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.34;ReadPosRankSum=-1.177;SOR=0.527 GT:AD:DP:GQ:PL 0/1:40,9:49:99:103,0,830 14 92268615 rs2402073 T G 3715.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3744,377,0 14 92280037 rs10134181 T C 1706.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1735,177,0 14 92347680 rs2430347 A G 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.192;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.026;SOR=0.495 GT:AD:DP:GQ:PL 0/1:79,78:157:99:1952,0,1846 14 92537354 . C CCTGCTGCTGCTGCTGCTGCTGCTGCTG 2297.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.898;ClippingRankSum=0;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.91;MQRankSum=6.711;QD=16.07;ReadPosRankSum=1.78;SOR=0.697 GT:AD:DP:GQ:PL 0/1:101,42:158:99:2335,0,6410 14 92549586 rs16999141 G A 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=7.314;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-1.068;QD=12.69;ReadPosRankSum=0.684;SOR=1.167 GT:AD:DP:GQ:PL 0/1:86,100:186:99:2388,0,1936 14 92588002 rs3818263 T G 2862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.108;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.276;SOR=0.902 GT:AD:DP:GQ:PL 0/1:110,113:223:99:2891,0,2527 14 92792255 rs941646 G A 2610.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2639,275,0 14 92909073 rs941650 T C 3122.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3151,309,0 14 92920423 rs17783624 C A 4888.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4917,515,0 14 92922900 rs77671856 G A 6132.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6161,605,0 14 93118038 rs3829947 A G 2950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=5.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.11;SOR=0.999 GT:AD:DP:GQ:PL 0/1:119,135:254:99:2979,0,2727 14 93118229 rs117068593 C T 2105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.012;SOR=0.413 GT:AD:DP:GQ:PL 0/1:69,94:163:99:2134,0,1522 14 93118669 rs3742716 G A 3443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.744;SOR=0.644 GT:AD:DP:GQ:PL 0/1:149,141:290:99:3472,0,3779 14 93154537 rs71721558 TGGC T 7930.73 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.69;QD=43.34;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,183:183:99:7968,552,0 14 93178191 rs1951708 A G 4187.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4216,420,0 14 93180727 rs59223493 A G 573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.717;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=3.058;SOR=0.906 GT:AD:DP:GQ:PL 0/1:34,25:59:99:602,0,839 14 93276654 rs1040835 T C 2437.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2466,237,0 14 93401178 rs941581 A G 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.299;SOR=0.452 GT:AD:DP:GQ:PL 0/1:65,76:141:99:1700,0,1588 14 93712644 rs55659625 TA T 78.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.415;QD=1.29;ReadPosRankSum=-1.001;SOR=0.663 GT:AD:DP:GQ:PL 0/1:48,13:73:99:116,0,1064 14 93799284 rs146686071 ACCG A 859.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.69;ReadPosRankSum=0.308;SOR=0.207 GT:AD:DP:GQ:PL 0/1:23,23:46:99:897,0,962 14 93994954 rs28420706 G A 4336.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4365,454,0 14 94007075 rs1951716 C T 7097.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7126,740,0 14 94088369 rs28670114 T C 3035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.279;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=1.285;SOR=0.635 GT:AD:DP:GQ:PL 0/1:149,115:264:99:3064,0,3560 14 94088587 rs4905081 G A 3638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.205;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.381;SOR=0.705 GT:AD:DP:GQ:PL 0/1:155,162:317:99:3667,0,3802 14 94103602 rs4905082 G A 2713.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2742,282,0 14 94187832 rs1887197 C T 2471.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.46;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2500,269,0 14 94245649 rs4905087 A G 2828.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.9;SOR=1.092 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,63:63:99:1|1:94245649_A_G:2857,193,0 14 94245652 rs4900195 C T 2828.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.9;SOR=1.01 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,63:63:99:1|1:94245649_A_G:2857,193,0 14 94391699 rs10141024 G A 3842.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.85;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3871,413,0 14 94405871 rs10873442 G C 7471.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7500,696,0 14 94417421 rs7147919 G A 4680.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4709,458,0 14 94417531 rs11555542 T C 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=0.057;SOR=0.601 GT:AD:DP:GQ:PL 0/1:115,85:200:99:1997,0,2982 14 94417541 rs4277287 A G 7202.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.13;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,194:194:99:7231,583,0 14 94417586 rs4483793 G A 4669.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.294 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4698,458,0 14 94510964 rs2273226 T C 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=6.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-1.64;SOR=0.385 GT:AD:DP:GQ:PL 0/1:105,101:206:99:2452,0,2484 14 94517533 rs112814907 C CCACGG 3639.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.028;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.33;ReadPosRankSum=1.532;SOR=1.006 GT:AD:DP:GQ:PL 0/1:76,87:163:99:3677,0,3876 14 94524216 rs1056810 T C 1258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.086;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=1.507;SOR=0.703 GT:AD:DP:GQ:PL 0/1:77,57:134:99:1287,0,1803 14 94582130 rs3833507 T TGGCCATGGC 3811.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.481;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.13;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.85;ReadPosRankSum=1.803;SOR=0.592 GT:AD:DP:GQ:PL 0/1:99,93:192:99:3849,0,4543 14 94750292 rs1950641 G A 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.575;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.683;SOR=1.002 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1566,0,1362 14 94756450 rs2232700 T A 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.183;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.023;SOR=0.665 GT:AD:DP:GQ:PL 0/1:108,95:203:99:2539,0,2638 14 94756750 rs941591 T C 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.21;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=1.449;SOR=0.832 GT:AD:DP:GQ:PL 0/1:110,90:200:99:2257,0,2847 14 94756794 rs941590 T C 2314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=5.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.953;SOR=0.545 GT:AD:DP:GQ:PL 0/1:125,89:214:99:2343,0,3460 14 94772504 rs1042394 G A 1629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.067;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.202;SOR=0.835 GT:AD:DP:GQ:PL 0/1:72,73:145:99:1658,0,1554 14 94776219 rs2228542 C T 1916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.987;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.283;SOR=0.798 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,82:183:99:0|1:94776219_C_T:1945,0,3981 14 94776221 rs2228541 A C 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.127;SOR=0.627 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,100:183:99:1|0:94776219_C_T:2415,0,3188 14 94847262 rs17580 T A 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.796;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=1.911;SOR=0.961 GT:AD:DP:GQ:PL 0/1:66,82:148:99:1953,0,1423 14 94914455 rs10129672 A T 2904.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.01;SOR=1.531 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2933,264,0 14 94929541 rs2224418 G A 4048.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4077,426,0 14 94931105 rs11628722 A G 2794.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2823,295,0 14 94933473 rs28618118 C A 5805.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5834,593,0 14 94933640 rs28583900 A T 5014.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5043,501,0 14 94933695 rs17090921 G A 4557.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.149 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4586,452,0 14 95033356 rs5510 C T 1972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.064;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-1.608;SOR=0.77 GT:AD:DP:GQ:PL 0/1:94,91:185:99:2001,0,2128 14 95033595 rs5511 A T 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.732;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=5.389;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=-0.317;SOR=1.165 GT:AD:DP:GQ:PL 0/1:60,77:137:99:1973,0,1324 14 95053890 rs6115 G A 7309.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7338,695,0 14 95054176 rs6112 T C 7249.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7278,704,0 14 95058462 rs6116 A C 5966.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5995,570,0 14 95080803 rs4934 G A 1616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.06;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.28;SOR=0.988 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1645,0,2066 14 95085707 rs61737404 C T 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.654;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-2.862;SOR=0.67 GT:AD:DP:GQ:PL 0/1:85,94:179:99:2359,0,1850 14 95088847 rs11625058 G A 677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.88;ReadPosRankSum=-0.188;SOR=0.963 GT:AD:DP:GQ:PL 0/1:55,31:86:99:706,0,1501 14 95566101 rs71899983 AC A 845.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.31;ReadPosRankSum=1.202;SOR=0.576 GT:AD:DP:GQ:PL 0/1:96,38:143:99:883,0,2581 14 95566103 . ACACAC A,AACAC 2685.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.511;ClippingRankSum=0;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=19.75;ReadPosRankSum=0.159;SOR=0.77 GT:AD:DP:GQ:PL 1/2:16,38,82:136:99:2723,1719,2379,570,0,884 14 95566105 rs367764979 ACAC A 2284.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.85;ReadPosRankSum=-0.794;SOR=0.872 GT:AD:DP:GQ:PL 0/1:46,82:135:99:2322,0,1172 14 95675791 rs118150470 C T 1103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.264;SOR=0.691 GT:AD:DP:GQ:PL 0/1:41,50:91:99:1132,0,961 14 95906321 rs9671369 G A 3013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.564;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.776;SOR=0.741 GT:AD:DP:GQ:PL 0/1:185,133:318:99:3042,0,4354 14 95910969 rs36019358 CAG C 2565.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.185;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.778;QD=18.33;ReadPosRankSum=-2.147;SOR=0.765 GT:AD:DP:GQ:PL 0/1:71,69:140:99:2603,0,2725 14 95912388 rs61749972 G A 2297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-0.031;SOR=0.788 GT:AD:DP:GQ:PL 0/1:130,104:234:99:2326,0,3121 14 95918566 rs56100306 C T 1807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.532;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=4.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=1.16;SOR=1.035 GT:AD:DP:GQ:PL 0/1:81,69:150:99:1836,0,2116 14 95918625 rs4905318 T C 3345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=5.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.874;SOR=0.997 GT:AD:DP:GQ:PL 0/1:126,146:272:99:3374,0,2647 14 95921741 rs4905324 C T 4670.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.451 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4699,473,0 14 95923670 rs2024863 A C 6319.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.02;QD=29.95;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6348,632,0 14 96010424 rs11628901 G A 1148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.488;SOR=0.702 GT:AD:DP:GQ:PL 0/1:64,56:120:99:1177,0,1472 14 96157187 rs1064017 G A 6741.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.08;ReadPosRankSum=2.883;SOR=0.785 GT:AD:DP:GQ:PL 1/1:2,247:249:99:6770,691,0 14 96703484 rs1046248 C T 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-0.601;SOR=0.683 GT:AD:DP:GQ:PL 0/1:81,62:143:99:1372,0,2026 14 96707457 rs5224 A G 8165.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8194,792,0 14 96730142 rs2071084 A G 6687.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6716,647,0 14 96730475 rs150743362 G A 3167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.353;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.726;SOR=0.629 GT:AD:DP:GQ:PL 0/1:124,126:250:99:3196,0,3375 14 96770952 rs34674555 CAA C,CAAA 1478.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.947;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=22.41;ReadPosRankSum=-0.119;SOR=0.607 GT:AD:DP:GQ:PL 1/2:5,30,31:74:99:1516,682,1323,913,0,1146 14 96771959 rs2289622 A G 3897.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=1.476 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3926,360,0 14 96777468 rs3759601 G C 1463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-0.657;SOR=0.593 GT:AD:DP:GQ:PL 0/1:82,64:146:99:1492,0,2055 14 96781912 rs9323945 T C 2510.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2539,262,0 14 96797724 rs1822372 G A 2961.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2990,291,0 14 96829290 rs12434329 G A 5239.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5268,512,0 14 96916232 rs11424079 G GT 365.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.286;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=0.846;QD=9.62;ReadPosRankSum=0.969;SOR=0.565 GT:AD:DP:GQ:PL 0/1:18,20:46:99:403,0,349 14 96922752 rs2369679 C G 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.252;SOR=0.69 GT:AD:DP:GQ:PL 0/1:83,95:178:99:2192,0,1903 14 97299853 rs2145635 A G 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=4.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.61;SOR=0.498 GT:AD:DP:GQ:PL 0/1:76,76:152:99:1786,0,1892 14 97321689 rs2230532 C T 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=0.28;SOR=0.804 GT:AD:DP:GQ:PL 0/1:100,78:178:99:1806,0,2560 14 99182535 rs17097718 C T 1610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.444;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.888;SOR=0.98 GT:AD:DP:GQ:PL 0/1:84,70:154:99:1639,0,2029 14 99876505 rs1047351 A G 764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.562;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=0.545;SOR=0.882 GT:AD:DP:GQ:PL 0/1:51,36:87:99:793,0,1210 14 99961830 rs2069492 T C 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.105;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-1.053;SOR=0.791 GT:AD:DP:GQ:PL 0/1:60,40:100:99:941,0,1458 14 100069576 . C G 3852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0;DP=314;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.113;SOR=0.762 GT:AD:DP:GQ:PL 0/1:152,160:312:99:3881,0,3872 14 100069742 rs8007401 G A 6637.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6666,630,0 14 100141689 rs7158073 T C 3162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.22;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=4.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.6;SOR=0.947 GT:AD:DP:GQ:PL 0/1:118,129:247:99:3191,0,2758 14 100375707 rs34198557 C T 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=1.768;SOR=0.701 GT:AD:DP:GQ:PL 0/1:97,93:190:99:2100,0,2391 14 100380948 rs2250718 T C 2251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=2.777;SOR=0.556 GT:AD:DP:GQ:PL 0/1:94,101:195:99:2280,0,2188 14 100607595 rs56051501 C T 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.184;SOR=0.669 GT:AD:DP:GQ:PL 0/1:73,70:143:99:1610,0,1709 14 100615665 rs4905936 T C 12909.8 PASS AC=2;AF=1;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,423:423:99:12938,1268,0 14 100625902 rs7157599 C T 4811.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4840,498,0 14 100705707 . CGAG C 187.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0;DP=318;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=4.507;QD=0.68;ReadPosRankSum=-0.216;SOR=0.848 GT:AD:DP:GQ:PL 0/1:252,25:277:99:225,0,10800 14 100759046 rs3825555 C A 4053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.078;SOR=0.615 GT:AD:DP:GQ:PL 0/1:169,170:339:99:4082,0,4214 14 100792126 rs35097172 C T 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.402;SOR=0.855 GT:AD:DP:GQ:PL 0/1:77,74:151:99:1695,0,2032 14 100792482 rs1951519 C A 749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.6;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=-0.764;SOR=0.518 GT:AD:DP:GQ:PL 0/1:56,37:93:99:778,0,1436 14 100795139 rs35007880 G T 2909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.802;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=2.429;SOR=0.938 GT:AD:DP:GQ:PL 0/1:140,118:258:99:2938,0,3356 14 100795338 rs8015259 G C 2665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-1.084;SOR=0.657 GT:AD:DP:GQ:PL 0/1:102,107:209:99:2694,0,2647 14 100808845 rs9453 G A 2666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=-1.348;SOR=0.707 GT:AD:DP:GQ:PL 0/1:147,120:267:99:2695,0,3652 14 100813077 rs941923 T C 1208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.705;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=6.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-2.013;SOR=1.004 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1237,0,1233 14 100847523 rs2181170 T C 6400.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6429,600,0 14 100847707 rs2273800 A G 7395.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7424,724,0 14 100847930 rs3742387 A G 7893.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=1.083 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7922,770,0 14 100996312 rs13065 T C 8857.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8886,870,0 14 101005215 rs12893951 T C 8463.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.63;SOR=1.161 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,194:194:99:1|1:101005215_T_C:8492,596,0 14 101005236 rs12892571 A G 9895.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.23;SOR=1.207 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,246:246:99:1|1:101005215_T_C:9924,752,0 14 101198417 rs6575799 A G 10780.8 PASS AC=2;AF=1;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.5;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,392:392:99:10809,1175,0 14 101200645 rs1802710 T C 5104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.819;ClippingRankSum=0;DB;DP=436;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.312;SOR=0.824 GT:AD:DP:GQ:PL 0/1:224,211:435:99:5133,0,5299 14 101347037 rs34696219 AG A 3240.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.812;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=3.623;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.061;QD=13.73;ReadPosRankSum=1.194;SOR=0.698 GT:AD:DP:GQ:PL 0/1:124,112:236:99:3278,0,3628 14 101349017 rs6575805 A G 2851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.86;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.123;SOR=0.752 GT:AD:DP:GQ:PL 0/1:130,119:249:99:2880,0,3098 14 101349764 rs34163305 C T 3356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.241;SOR=0.645 GT:AD:DP:GQ:PL 0/1:148,138:286:99:3385,0,3795 14 101350298 rs3825569 T C 3547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.966;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-0.163;SOR=0.782 GT:AD:DP:GQ:PL 0/1:124,133:257:99:3576,0,2930 14 101350670 rs35401447 C CTCT 4382.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.702;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.043;QD=18.73;ReadPosRankSum=0.118;SOR=0.664 GT:AD:DP:GQ:PL 0/1:121,113:234:99:4420,0,5361 14 102360916 rs2251246 G A 1041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.835;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.245;SOR=0.706 GT:AD:DP:GQ:PL 0/1:47,45:92:99:1070,0,1078 14 102449338 rs3830914 C CT 847.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.37;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=0.144;SOR=0.881 GT:AD:DP:GQ:PL 0/1:49,34:83:99:885,0,1312 14 102453073 rs17512054 A G 1932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-0.733;SOR=0.691 GT:AD:DP:GQ:PL 0/1:104,87:191:99:1961,0,2685 14 102463407 rs12893215 A G 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.275;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=0.11;SOR=0.643 GT:AD:DP:GQ:PL 0/1:95,78:173:99:1941,0,2501 14 102493761 rs8010870 A G 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.454;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-1.809;SOR=0.932 GT:AD:DP:GQ:PL 0/1:83,59:142:99:1566,0,2001 14 102504838 rs17541505 C T 2748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.422;SOR=0.644 GT:AD:DP:GQ:PL 0/1:136,121:257:99:2777,0,3297 14 102514227 rs13749 T C 3362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.79;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.403;SOR=0.767 GT:AD:DP:GQ:PL 0/1:133,146:279:99:3391,0,3130 14 102549873 rs7156529 G A 817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=6.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-0.677;SOR=0.221 GT:AD:DP:GQ:PL 0/1:34,37:71:99:846,0,945 14 102550803 rs4947 G A 1110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.527;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=0;QD=9.83;ReadPosRankSum=-0.209;SOR=0.422 GT:AD:DP:GQ:PL 0/1:62,51:113:99:1139,0,1708 14 102568367 rs8005905 T A 1565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.642;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.165;SOR=0.63 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1594,0,1374 14 102675350 rs6575900 G C 7641.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,247:249:99:7670,740,0 14 102695693 rs2236493 T C 5393.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5422,517,0 14 102698034 rs7152076 C T 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.358;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=1.547;SOR=0.638 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1216,0,1547 14 102698131 rs7152550 G A 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.065;SOR=0.631 GT:AD:DP:GQ:PL 0/1:75,92:167:99:2029,0,1682 14 102729881 rs56377169 A G 481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.415;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.458;SOR=0.899 GT:AD:DP:GQ:PL 0/1:25,21:46:99:510,0,1010 14 102729886 rs34931752 G A 545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.226;SOR=0.6 GT:AD:DP:GQ:PL 0/1:23,26:49:99:574,0,846 14 102792386 rs7158731 T C 6937.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6966,705,0 14 102792631 rs7158139 G A 7369.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7398,756,0 14 102798055 rs1543540 G A 2922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-1.487;SOR=0.558 GT:AD:DP:GQ:PL 0/1:97,127:224:99:2951,0,2195 14 102815042 rs7011 C T 2179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.403;SOR=0.866 GT:AD:DP:GQ:PL 0/1:85,96:181:99:2208,0,2047 14 102843039 rs2296145 A C 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.446;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=1.983;SOR=0.542 GT:AD:DP:GQ:PL 0/1:45,40:85:99:1072,0,1125 14 102843057 rs17100874 C T 1271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.272;SOR=0.732 GT:AD:DP:GQ:PL 0/1:52,50:102:99:1300,0,1487 14 102891646 rs4906197 A G 3751.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.311 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3780,374,0 14 102894593 rs1309353 G A 2406.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.88;SOR=2.085 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2435,274,0 14 102898363 rs2273906 C T 3119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.72;SOR=0.663 GT:AD:DP:GQ:PL 0/1:155,135:290:99:3148,0,3589 14 102900768 rs17791240 A G 3064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.247;SOR=0.824 GT:AD:DP:GQ:PL 0/1:124,128:252:99:3093,0,3010 14 102901201 rs10149146 A G 8462.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8491,821,0 14 102904551 rs3831019 CCCCGCTCCCTGCT C 1434.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=5.148;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=2.748;QD=15.1;ReadPosRankSum=-0.131;SOR=0.65 GT:AD:DP:GQ:PL 0/1:56,39:95:99:1472,0,7096 14 103059220 rs1057881 G A 2089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=11.053;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=2.011;QD=8.97;ReadPosRankSum=-0.983;SOR=1.291 GT:AD:DP:GQ:PL 0/1:133,100:233:99:2118,0,3445 14 103338324 rs2295402 T A 477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.149;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.9;ReadPosRankSum=-0.128;SOR=0.874 GT:AD:DP:GQ:PL 0/1:56,25:81:99:506,0,1438 14 103342049 rs1131877 T C 1408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=5.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.403;SOR=0.661 GT:AD:DP:GQ:PL 0/1:53,67:120:99:1437,0,1119 14 103440473 rs8009219 G C 6580.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6609,633,0 14 103566904 rs1057640 G A 2855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=3.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.238;SOR=0.9 GT:AD:DP:GQ:PL 0/1:149,124:273:99:2884,0,3808 14 103568729 rs10142200 A G 3469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=0.29;SOR=0.66 GT:AD:DP:GQ:PL 0/1:133,145:278:99:3498,0,3303 14 103574714 rs10144543 C T 2198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=5.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=2.208;SOR=1.102 GT:AD:DP:GQ:PL 0/1:84,90:174:99:2227,0,2084 14 103576395 rs729185 G A 3416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.157;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=6.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.501;SOR=0.43 GT:AD:DP:GQ:PL 0/1:142,159:301:99:3445,0,3480 14 103576415 rs729184 A G 8915.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,314:314:99:8944,940,0 14 103576443 rs729183 T C 6367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.65;ReadPosRankSum=2.066;SOR=0.653 GT:AD:DP:GQ:PGT:PID:PL 0/1:160,164:324:99:0|1:103576443_T_C:6396,0,6235 14 103576444 rs744153 C G 6367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.87;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.59;ReadPosRankSum=1.859;SOR=0.664 GT:AD:DP:GQ:PGT:PID:PL 0/1:161,164:325:99:0|1:103576443_T_C:6396,0,6235 14 103593950 rs1132339 C G 3191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=0.977;SOR=0.754 GT:AD:DP:GQ:PL 0/1:121,118:239:99:3220,0,3545 14 103923475 rs2273699 A G 718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.385;ClippingRankSum=0;DB;DP=37;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.97;ReadPosRankSum=-0.043;SOR=1.002 GT:AD:DP:GQ:PL 0/1:13,23:36:99:747,0,301 14 103934488 rs10137161 T C 4187.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4216,396,0 14 103986255 rs1803283 C T 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=2.273;SOR=0.623 GT:AD:DP:GQ:PL 0/1:101,81:182:99:1901,0,2587 14 103988180 rs1136165 G T 3401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.099;SOR=0.79 GT:AD:DP:GQ:PL 0/1:137,130:267:99:3430,0,3719 14 103996396 rs2765037 G A 8054.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=3.613;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.97;ReadPosRankSum=-0.473;SOR=0.67 GT:AD:DP:GQ:PL 1/1:1,277:278:99:8083,793,0 14 104028270 rs7148456 T C 787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.52;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.239;SOR=0.738 GT:AD:DP:GQ:PL 0/1:46,36:82:99:816,0,1065 14 104029449 rs2274267 G A 3455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.18;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.181;SOR=0.848 GT:AD:DP:GQ:PL 0/1:148,134:282:99:3484,0,3694 14 104136633 rs12590968 G C 1872.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=1.437 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1901,194,0 14 104165927 rs1799796 T C 3172.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=1.728 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3201,306,0 14 104167075 rs861537 C T 2926.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2955,302,0 14 104167545 rs709399 G A 4822.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.56;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4851,522,0 14 104194196 rs1535100 C G 7836.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,268:268:99:7865,803,0 14 104199356 rs2295146 C T 4794.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4823,491,0 14 104394835 rs9324065 T C 7802.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,275:275:99:7831,822,0 14 104394850 rs9324066 C T 3057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.893;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=2.249;SOR=0.493 GT:AD:DP:GQ:PL 0/1:117,138:255:99:3086,0,2883 14 104407788 rs78523783 A G 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.12;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=-0.287;SOR=0.782 GT:AD:DP:GQ:PL 0/1:75,54:129:99:1195,0,1831 14 104429453 rs6576013 A G 2694.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2723,284,0 14 104436931 rs11851097 C T 866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.099;SOR=0.741 GT:AD:DP:GQ:PL 0/1:40,41:81:99:895,0,933 14 104452640 rs10143389 G A 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.603;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.197;SOR=0.768 GT:AD:DP:GQ:PL 0/1:53,41:94:99:966,0,1266 14 104465037 rs10133836 T C 1892.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1921,203,0 14 104470686 rs28391043 G A 512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-0.806;QD=8.14;ReadPosRankSum=-0.902;SOR=0.836 GT:AD:DP:GQ:PL 0/1:37,26:63:99:541,0,851 14 104481083 rs11160779 T C 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.3;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=6.8;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=0.924;QD=16.56;ReadPosRankSum=-0.322;SOR=1.923 GT:AD:DP:GQ:PL 0/1:21,27:48:99:823,0,452 14 104497543 rs10135507 C T 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.359;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-1.039;SOR=0.75 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1610,0,1451 14 104559852 rs941953 T C 1376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.858;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=-1.504;SOR=0.763 GT:AD:DP:GQ:PL 0/1:84,56:140:99:1405,0,1922 14 104559919 rs1770984 T C 2603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.88;ReadPosRankSum=0.742;SOR=0.451 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,70:164:99:0|1:104559919_T_C:2632,0,3628 14 104559922 rs1744284 C G 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=3.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.29;ReadPosRankSum=0.516;SOR=0.465 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,70:160:99:0|1:104559919_T_C:2635,0,3607 14 104559959 rs11267705 CTGGGTGGGGCTGTGGTGTGTGGGTGGGGCTGAGGTGTG C 855.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.087;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=27.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.78;ReadPosRankSum=-1.051;SOR=2.127 GT:AD:DP:GQ:PL 0/1:26,25:51:99:893,0,1058 14 104561998 rs1770983 T C 6811.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6840,684,0 14 104563874 rs7156718 C T 5166.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.55;ReadPosRankSum=-0.374;SOR=0.382 GT:AD:DP:GQ:PL 1/1:1,180:181:99:5195,502,0 14 104573690 rs1744301 A G 5068.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.205 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5097,523,0 14 104641612 rs4906422 T C 3802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.582;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=6.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-1.271;SOR=0.982 GT:AD:DP:GQ:PL 0/1:141,150:291:99:3831,0,3436 14 104642341 rs2487304 A G 2063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.925;SOR=0.806 GT:AD:DP:GQ:PL 0/1:111,80:191:99:2092,0,2990 14 104642422 rs3742947 A G 2973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.6;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.702;SOR=0.664 GT:AD:DP:GQ:PL 0/1:131,120:251:99:3002,0,3414 14 104643409 rs2487303 A G 3598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.335;SOR=0.88 GT:AD:DP:GQ:PL 0/1:135,141:276:99:3627,0,3495 14 104644147 rs11621644 C T 3155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-1.865;SOR=0.57 GT:AD:DP:GQ:PL 0/1:162,130:292:99:3184,0,4120 14 105055118 rs67900961 TGACGGGCAG T 12898.7 PASS AC=2;AF=1;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=44.48;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,290:290:99:12936,879,0 14 105060632 rs3803315 T C 2434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.47;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.468;SOR=0.606 GT:AD:DP:GQ:PL 0/1:116,93:209:99:2463,0,2757 14 105070791 rs3803313 G T 2104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.048;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.742;SOR=0.882 GT:AD:DP:GQ:PL 0/1:102,93:195:99:2133,0,2914 14 105167807 rs4983530 C T 9135.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,292:292:99:9164,876,0 14 105177351 rs3840006 CA C 6133.73 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=38.82;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,158:158:99:6171,476,0 14 105179184 rs142678449 G A 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.256;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.537;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,94:194:99:0|1:105179184_G_A:2253,0,2400 14 105179194 rs10133301 T C 6701.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.23;SOR=0.834 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,180:180:99:1|1:105179184_G_A:6730,550,0 14 105180565 rs4983535 T C 5701.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5730,546,0 14 105180706 rs1128840 A C 8617.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.962;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=3.166;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.34;ReadPosRankSum=-0.504;SOR=0.349 GT:AD:DP:GQ:PL 1/1:1,283:284:99:8646,841,0 14 105196230 rs80097179 A C 9463.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.55;QD=44.64;SOR=0.731 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,212:212:99:1|1:105196230_A_C:9492,650,0 14 105196235 rs34672588 G A 9749.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.58;QD=43.33;SOR=0.814 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,225:225:99:1|1:105196230_A_C:9778,677,0 14 105196365 rs33958252 T C 10152.8 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,328:328:99:10181,983,0 14 105211221 rs12432802 C T 5085.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.64;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5114,551,0 14 105213343 rs6644 A G 3236.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3265,321,0 14 105222037 rs1132975 C T 4961.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4990,516,0 14 105239894 rs1130233 C T 5833.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,209:209:99:5862,620,0 14 105267579 rs12878684 A G 3793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.452;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.188;SOR=0.746 GT:AD:DP:GQ:PL 0/1:132,150:282:99:3822,0,3170 14 105267934 rs34284721 G A 3123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.874;SOR=0.682 GT:AD:DP:GQ:PL 0/1:136,133:269:99:3152,0,3344 14 105268104 rs10141867 G A 3022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=6.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.307;SOR=0.956 GT:AD:DP:GQ:PL 0/1:170,135:305:99:3051,0,4209 14 105268228 rs4983387 G A 3187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.525;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.011;SOR=0.644 GT:AD:DP:GQ:PL 0/1:125,126:251:99:3216,0,3473 14 105344293 rs61995995 C T 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.555;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-0.589;SOR=0.814 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,41:118:99:0|1:105344293_C_T:1468,0,3170 14 105344318 rs2304758 G A 1377.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.39;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=1.684;SOR=0.766 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,40:117:99:0|1:105344293_C_T:1406,0,3195 14 105344761 rs41317300 C T 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.43;SOR=1.209 GT:AD:DP:GQ:PL 0/1:34,33:67:99:872,0,931 14 105349388 rs2028414 A C 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.996;SOR=0.843 GT:AD:DP:GQ:PL 0/1:112,95:207:99:2535,0,3117 14 105350178 rs45449696 C T 2072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-2.54;SOR=0.717 GT:AD:DP:GQ:PL 0/1:109,87:196:99:2101,0,2924 14 105350355 rs2841236 A G 4737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.31;ClippingRankSum=0;DB;DP=381;ExcessHet=3.0103;FS=1.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.784;SOR=0.769 GT:AD:DP:GQ:PL 0/1:191,190:381:99:4766,0,4726 14 105350799 rs9788593 C T 3011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.015;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=9.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.522;SOR=0.32 GT:AD:DP:GQ:PL 0/1:106,117:223:99:3040,0,2681 14 105350868 rs9788594 C T 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=4.161;MLEAC=1;MLEAF=0.5;MQ=60.01;MQRankSum=-1.046;QD=13.41;ReadPosRankSum=1.073;SOR=0.452 GT:AD:DP:GQ:PL 0/1:95,106:201:99:2723,0,2377 14 105354293 rs2582548 A G 3226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.361;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=0.152;SOR=0.596 GT:AD:DP:GQ:PL 0/1:107,131:238:99:3255,0,2482 14 105359306 rs3742939 G C 1188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-0.144;SOR=0.588 GT:AD:DP:GQ:PL 0/1:74,47:121:99:1217,0,2003 14 105393556 rs2841280 G C 5616.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5645,587,0 14 105413325 rs138287800 C T 10083.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0;DB;DP=825;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.6;QD=12.25;ReadPosRankSum=0.604;SOR=0.698 GT:AD:DP:GQ:PL 0/1:417,406:823:99:10112,0,10532 14 105414280 rs2819429 T G 24055.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0;DB;DP=760;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;MQRankSum=-0.042;QD=31.69;ReadPosRankSum=2.03;SOR=0.274 GT:AD:DP:GQ:PL 1/1:1,758:759:99:24084,2241,0 14 105415352 rs12890949 G C 9896.77 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=31.12;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9925,954,0 14 105416220 rs2819435 T A 13549.8 PASS AC=2;AF=1;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.14;QD=29.65;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,457:457:99:13578,1366,0 14 105416784 rs59373922 A G 13255.8 PASS AC=2;AF=1;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.56;QD=31.56;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,420:420:99:13284,1258,0 14 105417731 rs199870471 G C 295.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.555;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=32.537;MLEAC=1;MLEAF=0.5;MQ=59.25;MQRankSum=-15.575;QD=0.76;ReadPosRankSum=-6.003;SOR=2.344 GT:AD:DP:GQ:PGT:PID:PL 0/1:358,31:389:99:0|1:105417725_C_G:324,0,22083 14 105417732 rs190986194 G A 514.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.957;ClippingRankSum=0;DB;DP=390;ExcessHet=3.0103;FS=32.458;MLEAC=1;MLEAF=0.5;MQ=59.25;MQRankSum=-15.554;QD=1.33;ReadPosRankSum=-5.587;SOR=2.344 GT:AD:DP:GQ:PGT:PID:PL 0/1:357,31:388:99:0|1:105417725_C_G:543,0,22139 14 105417738 . G C 1024.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.5;ClippingRankSum=0;DP=422;ExcessHet=3.0103;FS=16.509;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=-12.588;QD=2.44;ReadPosRankSum=-5.936;SOR=1.866 GT:AD:DP:GQ:PGT:PID:PL 0/1:371,49:420:99:0|1:105417725_C_G:1053,0,22504 14 105417747 rs373120351 A G 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.277;ClippingRankSum=0;DB;DP=455;ExcessHet=3.0103;FS=17.371;MLEAC=1;MLEAF=0.5;MQ=59.35;MQRankSum=-9.976;QD=4.24;ReadPosRankSum=-7.21;SOR=1.551 GT:AD:DP:GQ:PGT:PID:PL 0/1:367,85:452:99:0|1:105417725_C_G:1943,0,21774 14 105417774 rs2013228 G A 3091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.034;ClippingRankSum=0;DB;DP=499;ExcessHet=3.0103;FS=6.798;MLEAC=1;MLEAF=0.5;MQ=59.41;MQRankSum=-7.454;QD=6.23;ReadPosRankSum=-1.324;SOR=0.988 GT:AD:DP:GQ:PL 0/1:351,145:496:99:3120,0,9419 14 105417894 rs2819440 C G 17543.8 PASS AC=2;AF=1;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,556:556:99:17572,1668,0 14 105461067 rs894039 C T 2771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.183;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.241;SOR=0.791 GT:AD:DP:GQ:PL 0/1:126,108:234:99:2800,0,3253 14 105478102 rs3803294 G A 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.211;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.931;SOR=0.643 GT:AD:DP:GQ:PL 0/1:96,94:190:99:2373,0,2304 14 105622056 rs2816679 A G 8399.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8428,866,0 14 105688082 rs28406206 C T 4040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.091;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=4.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=1.46;SOR=0.524 GT:AD:DP:GQ:PL 0/1:177,166:343:99:4069,0,4137 14 105715327 rs2816604 A C 1271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.812;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-1.955;SOR=0.73 GT:AD:DP:GQ:PL 0/1:60,51:111:99:1300,0,1589 14 105715515 rs2816605 C T 6471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0;DB;DP=526;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.339;SOR=0.91 GT:AD:DP:GQ:PL 0/1:253,271:524:99:6500,0,6209 14 105716034 rs2816606 C T 2083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-0.487;SOR=0.836 GT:AD:DP:GQ:PL 0/1:95,89:184:99:2112,0,2387 14 105722726 rs1008628 T C 3603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-0.019;SOR=0.599 GT:AD:DP:GQ:PL 0/1:128,144:272:99:3632,0,3290 14 105850736 rs143071112 C T 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.335;SOR=0.557 GT:AD:DP:GQ:PL 0/1:39,48:87:99:1052,0,947 14 105916420 rs4983409 C T 6141.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6170,596,0 14 105930406 rs4983413 G A 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.778;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.7;SOR=0.583 GT:AD:DP:GQ:PL 0/1:99,97:196:99:2002,0,2419 14 105930923 rs11845995 G A 6013.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6042,598,0 14 105935824 rs13707 G A 4066.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4095,417,0 14 105953595 rs7140395 T C 6569.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6598,674,0 14 105954705 rs55633823 C T 2062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.777;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.93;ReadPosRankSum=1.216;SOR=0.778 GT:AD:DP:GQ:PL 0/1:140,91:231:99:2091,0,3991 14 105962234 rs7494350 T C 4645.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.246 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4674,465,0 14 105962369 rs7494717 A G 6351.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.08;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6380,577,0 14 105965102 rs34137879 G A 3838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.071;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.806;SOR=0.695 GT:AD:DP:GQ:PL 0/1:191,159:350:99:3867,0,4714 14 105996049 . T TGCC 3103.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0;DP=317;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=2.191;QD=11.76;ReadPosRankSum=0.486;SOR=0.675 GT:AD:DP:GQ:PL 0/1:143,121:264:99:3141,0,5776 14 106321590 rs12365 C A 11824.8 PASS AC=2;AF=1;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,386:386:99:11853,1157,0 15 20739885 rs57050697 T C 11502.8 PASS AC=2;AF=1;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.71;QD=29.8;SOR=1.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,386:386:99:1|1:20739885_T_C:11531,1156,0 15 20739937 rs201222558 CCTCCTG C 1320.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.791;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.5;MQ=38.42;MQRankSum=1.566;QD=8.47;ReadPosRankSum=2.147;SOR=0.429 GT:AD:DP:GQ:PGT:PID:PL 0/1:115,41:156:99:0|1:20739885_T_C:1358,0,4703 15 20740075 rs201994034 T G 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.487;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.5;MQ=51.33;MQRankSum=-0.377;QD=5.62;ReadPosRankSum=0.589;SOR=0.961 GT:AD:DP:GQ:PGT:PID:PL 0/1:224,56:280:99:0|1:20740075_T_G:1601,0,10563 15 20740088 rs373146154 A G 1745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=3.06;MLEAC=1;MLEAF=0.5;MQ=53.57;MQRankSum=-0.335;QD=4.81;ReadPosRankSum=1.026;SOR=0.895 GT:AD:DP:GQ:PGT:PID:PL 0/1:292,71:363:99:0|1:20740075_T_G:1774,0,12602 15 20740129 rs199932545 G A 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=635;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.83;MQRankSum=3.096;QD=3.53;ReadPosRankSum=-1.405;SOR=0.67 GT:AD:DP:GQ:PL 0/1:482,148:630:99:2250,0,13140 15 20740192 rs145446071 G A 1219.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0;DB;DP=736;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.17;MQRankSum=-0.064;QD=1.7;ReadPosRankSum=4.665;SOR=0.659 GT:AD:DP:GQ:PL 0/1:590,128:718:99:1248,0,19700 15 20740252 rs199807662 C A 7906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.37;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=1.48;MLEAC=1;MLEAF=0.5;MQ=56.82;MQRankSum=0.636;QD=19.97;ReadPosRankSum=0.188;SOR=0.793 GT:AD:DP:GQ:PL 0/1:88,308:396:99:7935,0,2688 15 20740290 . T TCC 5842.73 PASS AC=2;AF=1;AN=2;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.74;QD=44.94;SOR=2.452 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,130:130:99:1|1:20740290_T_TCC:5880,427,0 15 20740292 . G T 5542.77 PASS AC=2;AF=1;AN=2;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.07;QD=52.29;SOR=3.996 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,106:106:99:1|1:20740290_T_TCC:5571,394,0 15 20740293 . TGA T 4867.73 PASS AC=2;AF=1;AN=2;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.29;QD=49.17;SOR=3.846 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,99:99:99:1|1:20740290_T_TCC:4905,328,0 15 20743796 rs200673320 C T 608.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.18;QD=30.44;SOR=6.091 GT:AD:DP:GQ:PL 1/1:0,20:20:60:637,60,0 15 20743947 rs200077393 A G 1309.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.36;QD=29.11;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1338,134,0 15 20745094 . T C 77.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.545;ClippingRankSum=0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=22.67;MQRankSum=-4.066;QD=4.32;ReadPosRankSum=1.839;SOR=0.255 GT:AD:DP:GQ:PL 0/1:12,6:18:99:106,0,279 15 20747006 . T A 95.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.588;ClippingRankSum=-0;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23.07;MQRankSum=-0.566;QD=6.84;ReadPosRankSum=1.02;SOR=0.473 GT:AD:DP:GQ:PL 0/1:8,6:14:99:124,0,181 15 21051138 . TATTAAATGTTGCC T 1433.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.572;ClippingRankSum=0;DP=774;ExcessHet=3.0103;FS=4.718;MLEAC=1;MLEAF=0.5;MQ=38.02;MQRankSum=-2.679;QD=1.86;ReadPosRankSum=-0.785;SOR=1.176 GT:AD:DP:GQ:PL 0/1:685,86:771:99:1471,0,32475 15 21071192 rs149235289 C T 4668.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.103;ClippingRankSum=0;DB;DP=854;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=37.71;MQRankSum=-2.533;QD=5.47;ReadPosRankSum=0.575;SOR=0.798 GT:AD:DP:GQ:PL 0/1:585,268:853:99:4697,0,13681 15 21071374 . G A 329.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.89;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.91;MQRankSum=-1.984;QD=2.7;ReadPosRankSum=0.153;SOR=0.056 GT:AD:DP:GQ:PL 0/1:99,23:122:99:358,0,2747 15 21071460 . C T 316.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.847;ClippingRankSum=0;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.94;MQRankSum=-1.071;QD=9.9;ReadPosRankSum=-1.351;SOR=0.484 GT:AD:DP:GQ:PL 0/1:18,14:32:99:345,0,670 15 21071464 . A G 394.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.869;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.94;MQRankSum=0.915;QD=12.73;ReadPosRankSum=1.785;SOR=0.434 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,13:31:99:0|1:21071464_A_G:423,0,706 15 21071485 . A G 437.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.209;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.89;MQRankSum=1.678;QD=25.75;ReadPosRankSum=-0.369;SOR=1.739 GT:AD:DP:GQ:PL 0/1:5,12:17:99:466,0,200 15 21071492 . G T 315.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.695;ClippingRankSum=-0;DP=16;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.88;MQRankSum=0.776;QD=19.74;ReadPosRankSum=1.254;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 0/1:7,9:16:99:0|1:21071464_A_G:344,0,267 15 21071523 rs201623243 G C 145.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.204;ClippingRankSum=-0;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.72;MQRankSum=0.792;QD=20.82;ReadPosRankSum=0.608;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 0/1:3,4:7:84:0|1:21071464_A_G:174,0,84 15 22074657 rs200899135 C G 1795.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.439;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=16.174;MLEAC=1;MLEAF=0.5;MQ=30.56;MQRankSum=-5.273;QD=15.75;ReadPosRankSum=0.938;SOR=2.34 GT:AD:DP:GQ:PL 0/1:44,70:114:99:1824,0,968 15 22368862 rs1835183 G A 9546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.142;ClippingRankSum=0;DB;DP=457;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0.471;QD=20.94;ReadPosRankSum=-1.239;SOR=0.423 GT:AD:DP:GQ:PL 0/1:101,355:456:99:9575,0,1998 15 22368905 rs1835182 G A 10812.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.586;ClippingRankSum=0;DB;DP=530;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.802;QD=20.44;ReadPosRankSum=-0.684;SOR=0.491 GT:AD:DP:GQ:PL 0/1:125,404:529:99:10841,0,2026 15 22369248 rs491208 T C 19270.8 PASS AC=2;AF=1;AN=2;DB;DP=590;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.53;QD=32.66;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,590:590:99:19299,1769,0 15 22369290 rs12593418 A G 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.748;ClippingRankSum=0;DB;DP=570;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.5;MQ=48.41;MQRankSum=-2.108;QD=3.19;ReadPosRankSum=0.452;SOR=0.848 GT:AD:DP:GQ:PL 0/1:457,113:570:99:1849,0,12178 15 22369426 rs4087943 G A 5734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0;DB;DP=422;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.19;QD=13.65;ReadPosRankSum=-0.127;SOR=0.709 GT:AD:DP:GQ:PL 0/1:190,230:420:99:5763,0,4474 15 22382655 rs535034 A C 1787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.259;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=52.61;MQRankSum=0.599;QD=4.75;ReadPosRankSum=-0.438;SOR=0.699 GT:AD:DP:GQ:PL 0/1:286,90:376:99:1816,0,7317 15 22382704 rs62006708 G C 1233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.692;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.5;MQ=44.81;MQRankSum=-1.372;QD=3.95;ReadPosRankSum=0.726;SOR=0.875 GT:AD:DP:GQ:PL 0/1:252,60:312:99:1262,0,7709 15 22382728 rs2808136 C T 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.703;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=42.91;MQRankSum=-0.547;QD=4.71;ReadPosRankSum=1.806;SOR=0.738 GT:AD:DP:GQ:PL 0/1:246,67:313:99:1502,0,7662 15 22382739 rs2671839 A G 11905.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.81;QD=35.02;SOR=1.077 GT:AD:DP:GQ:PL 1/1:0,340:340:99:11934,1021,0 15 22382821 rs12438969 G C 2948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.037;ClippingRankSum=0;DB;DP=541;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.86;MQRankSum=-0.672;QD=5.46;ReadPosRankSum=-0.81;SOR=0.681 GT:AD:DP:GQ:PGT:PID:PL 0/1:439,101:540:99:0|1:22382821_G_C:2977,0,18084 15 22382828 rs62006709 C A 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.306;ClippingRankSum=0;DB;DP=560;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=56.41;MQRankSum=-0.845;QD=5.22;ReadPosRankSum=-0.551;SOR=0.635 GT:AD:DP:GQ:PGT:PID:PL 0/1:456,103:559:99:0|1:22382821_G_C:2948,0,18602 15 22382897 rs62006710 A G 2613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.516;ClippingRankSum=0;DB;DP=543;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.5;MQ=58.69;MQRankSum=0.38;QD=4.81;ReadPosRankSum=-1.062;SOR=0.856 GT:AD:DP:GQ:PL 0/1:415,128:543:99:2642,0,10904 15 22383064 rs12441468 C A 1909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.013;ClippingRankSum=0;DB;DP=442;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.89;MQRankSum=-3.316;QD=4.32;ReadPosRankSum=1.843;SOR=0.706 GT:AD:DP:GQ:PGT:PID:PL 0/1:334,108:442:99:0|1:22383064_C_A:1938,0,12740 15 22383066 rs559754 A G 11048.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.726;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=57.01;MQRankSum=-6.56;QD=24.5;ReadPosRankSum=1.428;SOR=0.67 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,339:451:99:0|1:22383064_C_A:11077,0,1877 15 22383189 rs1820851 G A 4521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=10.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-1.245;SOR=0.449 GT:AD:DP:GQ:PL 0/1:155,181:336:99:4550,0,3875 15 22472942 rs586350 C G 16956.8 PASS AC=2;AF=1;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.25;QD=30.23;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,561:561:99:16985,1685,0 15 22473028 rs3814940 C T 3020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=548;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.5;MQ=57.92;MQRankSum=1.515;QD=5.68;ReadPosRankSum=0.884;SOR=0.516 GT:AD:DP:GQ:PL 0/1:379,153:532:99:3049,0,10162 15 22473042 rs72687775 G T 1489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.19;ClippingRankSum=0;DB;DP=553;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.5;MQ=58.98;MQRankSum=-8.975;QD=2.78;ReadPosRankSum=-0.696;SOR=0.931 GT:AD:DP:GQ:PL 0/1:426,109:535:99:1518,0,11743 15 22473106 rs72687776 G A 2251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.024;ClippingRankSum=0;DB;DP=676;ExcessHet=3.0103;FS=7.585;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=-4.876;QD=3.51;ReadPosRankSum=1.103;SOR=1.226 GT:AD:DP:GQ:PL 0/1:495,147:642:99:2280,0,13679 15 22473146 rs75509601 A G 2245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.079;ClippingRankSum=0;DB;DP=656;ExcessHet=3.0103;FS=5.226;MLEAC=1;MLEAF=0.5;MQ=59.32;MQRankSum=-5.687;QD=3.56;ReadPosRankSum=2.095;SOR=1.126 GT:AD:DP:GQ:PL 0/1:497,133:630:99:2274,0,12480 15 22473167 rs201318253 T C 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.287;ClippingRankSum=0;DB;DP=601;ExcessHet=3.0103;FS=5.645;MLEAC=1;MLEAF=0.5;MQ=59.25;MQRankSum=-5.839;QD=2.91;ReadPosRankSum=1.225;SOR=1.229 GT:AD:DP:GQ:PL 0/1:469,108:577:99:1708,0,12377 15 22473214 rs200093660 G A 511.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.583;ClippingRankSum=0;DB;DP=497;ExcessHet=3.0103;FS=9.116;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=-6.688;QD=1.06;ReadPosRankSum=-4.613;SOR=1.58 GT:AD:DP:GQ:PL 0/1:423,60:483:99:540,0,11859 15 22840279 rs61744212 G T 529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.54;ReadPosRankSum=-1.925;SOR=1.129 GT:AD:DP:GQ:PL 0/1:53,28:81:99:558,0,1384 15 22925851 rs4134802 C T 2104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.816;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.261;SOR=0.841 GT:AD:DP:GQ:PL 0/1:115,93:208:99:2133,0,2743 15 22929905 rs2305094 C G 2202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.23;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.466;SOR=0.557 GT:AD:DP:GQ:PL 0/1:93,101:194:99:2231,0,2056 15 22929906 rs2305093 A G 7297.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.42;SOR=1.06 GT:AD:DP:GQ:PL 1/1:0,195:195:99:7326,589,0 15 22939192 rs11633474 G A 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.184;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.799;SOR=1.189 GT:AD:DP:GQ:PL 0/1:61,50:111:99:1193,0,1381 15 22960868 rs2289818 G C 1858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.259;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.924;SOR=0.779 GT:AD:DP:GQ:PL 0/1:80,77:157:99:1887,0,1868 15 23685004 rs34879341 G GCAT 5884.73 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.24;QD=44.58;SOR=1.539 GT:AD:DP:GQ:PL 1/1:0,132:132:99:5922,397,0 15 23686598 rs35708006 T C 14729.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.643;ClippingRankSum=0;DB;DP=403;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=36.73;ReadPosRankSum=1.662;SOR=0.257 GT:AD:DP:GQ:PL 1/1:1,400:401:99:14758,1201,0 15 23686673 rs59122400 G A 12485.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.506;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=3.258;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=36.4;ReadPosRankSum=-0.636;SOR=0.414 GT:AD:DP:GQ:PL 1/1:1,342:343:99:12514,1020,0 15 23687214 rs12594944 C G 4911.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4940,468,0 15 23688944 rs4778531 A G 3527.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3556,366,0 15 23690510 rs3866720 T G 102.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.65;QD=20.58;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,5:5:15:131,15,0 15 23690543 rs2344900 T C 430.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.13;QD=25.34;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,17:17:51:459,51,0 15 23811592 rs2239669 C T 2791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.945;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.162;SOR=0.823 GT:AD:DP:GQ:PL 0/1:151,116:267:99:2820,0,3782 15 23891503 rs2233063 C G 8529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.979;ClippingRankSum=0;DB;DP=696;ExcessHet=3.0103;FS=3.176;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-2.035;QD=12.38;ReadPosRankSum=-1.023;SOR=0.827 GT:AD:DP:GQ:PL 0/1:350,339:689:99:8558,0,8059 15 23931507 rs2192206 G A 7538.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7567,743,0 15 24921115 rs35022251 C A 3820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.856;SOR=0.704 GT:AD:DP:GQ:PL 0/1:133,165:298:99:3849,0,2992 15 24921468 rs35870568 T C 2335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.459;SOR=0.855 GT:AD:DP:GQ:PL 0/1:82,96:178:99:2364,0,1971 15 24922230 rs3742950 C G 2700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.553;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.96;SOR=0.693 GT:AD:DP:GQ:PL 0/1:121,119:240:99:2729,0,3213 15 24923283 rs36032407 G A 2663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-1.371;SOR=0.696 GT:AD:DP:GQ:PL 0/1:131,113:244:99:2692,0,3383 15 24923390 rs60574723 C T 2604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.366;SOR=0.501 GT:AD:DP:GQ:PL 0/1:105,112:217:99:2633,0,2545 15 24923799 rs34413216 A C 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.575;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=2.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=0.373;SOR=0.629 GT:AD:DP:GQ:PL 0/1:85,83:168:99:2303,0,2253 15 25925094 rs3816800 C G 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.035;SOR=0.723 GT:AD:DP:GQ:PL 0/1:113,92:205:99:2168,0,2875 15 25926186 rs2076743 G A 2600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.37;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.892;QD=13.55;ReadPosRankSum=-0.213;SOR=0.59 GT:AD:DP:GQ:PL 0/1:84,108:192:99:2629,0,1923 15 25961964 rs10873607 A G 6168.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6197,606,0 15 25981190 rs7173593 A G 3274.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=1.074 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3303,344,0 15 26806064 rs3751582 T C 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.497;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.562;SOR=0.897 GT:AD:DP:GQ:PL 0/1:81,63:144:99:1695,0,1744 15 27020308 rs4273008 A C 6176.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6205,628,0 15 27182357 rs140682 T C 5206.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5235,547,0 15 27188353 rs140684 C A 5558.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.09;SOR=1.241 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,129:129:99:1|1:27188335_T_A:5587,391,0 15 27216746 rs2288694 C T 5916.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.52;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,215:215:99:5945,640,0 15 27772676 rs140679 C T 2327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.294;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-0.54;SOR=0.755 GT:AD:DP:GQ:PL 0/1:106,96:202:99:2356,0,2542 15 28211921 rs1800411 G A 1125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=-1.538;SOR=0.547 GT:AD:DP:GQ:PL 0/1:74,50:124:99:1154,0,1899 15 28228644 rs12910433 G A 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.605;SOR=0.68 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1409,0,1327 15 28231793 rs10852218 T C 1644.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1673,171,0 15 28235773 rs1800404 C T 3431.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3460,348,0 15 28359744 rs7495441 G A 2767.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=1.664 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2796,261,0 15 28386626 rs11636232 C T 3953.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3982,397,0 15 28414665 rs7494786 T C 3645.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.29;QD=30.38;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3674,359,0 15 28419566 rs201182375 T C 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.321;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.5;MQ=58.67;MQRankSum=-3.996;QD=2.85;ReadPosRankSum=-3.524;SOR=1.047 GT:AD:DP:GQ:PL 0/1:141,32:173:99:522,0,3992 15 28419619 rs141441362 C T 966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=58.22;MQRankSum=-7.422;QD=3.27;ReadPosRankSum=3.699;SOR=0.652 GT:AD:DP:GQ:PL 0/1:228,68:296:99:995,0,5871 15 28419695 rs149592795 T C 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.334;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.259;MLEAC=1;MLEAF=0.5;MQ=56.41;MQRankSum=-5.613;QD=3.39;ReadPosRankSum=0.273;SOR=0.938 GT:AD:DP:GQ:PL 0/1:224,63:287:99:1000,0,5583 15 28419746 rs139335991 G A 109.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.5;MQ=54.88;MQRankSum=-3.214;QD=0.66;ReadPosRankSum=-1.686;SOR=0.833 GT:AD:DP:GQ:PL 0/1:144,22:166:99:138,0,4108 15 28467246 rs376640270 T C 519.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.07;QD=32.49;SOR=2.584 GT:AD:DP:GQ:PL 1/1:0,16:16:48:548,48,0 15 28502279 rs11631797 A G 5196.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=29.36;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5225,530,0 15 28948484 rs377742692 G A 62.74 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.18;QD=31.37;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:28948484_G_A:90,6,0 15 28948491 . C G 62.74 SNP_MQ_filter AC=2;AF=1;AN=2;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.18;QD=31.37;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:28948484_G_A:90,6,0 15 28948511 rs368679251 T C 96.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.92;QD=32.09;SOR=2.833 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,3:3:9:1|1:28948484_G_A:124,9,0 15 28950629 rs201411280 C T 180.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.381;ClippingRankSum=0;DB;DP=551;ExcessHet=3.0103;FS=6.02;MLEAC=1;MLEAF=0.5;MQ=33.15;MQRankSum=-7.916;QD=0.33;ReadPosRankSum=3.45;SOR=0.23 GT:AD:DP:GQ:PGT:PID:PL 0/1:508,42:550:99:0|1:28950605_A_G:209,0,23056 15 28952958 . C T 2810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DP=260;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.93;MQRankSum=-4.012;QD=10.81;ReadPosRankSum=-0.344;SOR=0.679 GT:AD:DP:GQ:PL 0/1:138,122:260:99:2839,0,3367 15 28955705 . C T 209.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.083;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=15.919;MLEAC=1;MLEAF=0.5;MQ=26.34;MQRankSum=1.22;QD=3.75;ReadPosRankSum=0.971;SOR=3.713 GT:AD:DP:GQ:PL 0/1:43,13:56:99:238,0,1117 15 28957447 rs201444408 T C 1675.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.518;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=12.748;MLEAC=1;MLEAF=0.5;MQ=27.57;MQRankSum=-1.62;QD=12.7;ReadPosRankSum=-0.962;SOR=0.277 GT:AD:DP:GQ:PL 0/1:63,69:132:99:1704,0,1545 15 29347019 rs8040932 T C 2273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.979;QD=12.09;ReadPosRankSum=-0.791;SOR=0.927 GT:AD:DP:GQ:PL 0/1:93,95:188:99:2302,0,2290 15 29415560 rs3751562 G A 2610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.284;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=0.257;SOR=0.912 GT:AD:DP:GQ:PL 0/1:143,106:249:99:2639,0,3415 15 29415698 rs3751563 A G 3208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.838;SOR=0.75 GT:AD:DP:GQ:PL 0/1:111,127:238:99:3237,0,2782 15 29418520 rs2256273 C T 5973.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6002,629,0 15 29418573 rs2672680 A G 9163.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.14;SOR=0.806 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,203:203:99:1|1:29418573_A_G:9192,617,0 15 29418574 rs2256277 T C 9163.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.7;SOR=0.805 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,205:205:99:1|1:29418573_A_G:9192,617,0 15 29428556 rs8023368 C G 7864.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7893,809,0 15 29544656 rs4583203 T C 2148.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2177,228,0 15 30008856 rs7166878 C A 3687.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3716,375,0 15 30008889 rs2229518 G A 4079.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4108,413,0 15 30010328 rs72143374 TA T 218.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=-0.711;QD=3.71;ReadPosRankSum=-1.231;SOR=1.119 GT:AD:DP:GQ:PL 0/1:35,24:76:99:256,0,581 15 30018627 rs2229515 T C 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.533;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.697;SOR=0.655 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1314,0,1026 15 30383825 rs199869254 T C 273.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.507;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=30.77;MLEAC=1;MLEAF=0.5;MQ=36.58;MQRankSum=-2.313;QD=2.26;ReadPosRankSum=-0.672;SOR=4.804 GT:AD:DP:GQ:PL 0/1:100,21:121:99:302,0,2647 15 30384348 . T TC 249.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.35;ClippingRankSum=0;DP=149;ExcessHet=3.0103;FS=20.024;MLEAC=1;MLEAF=0.5;MQ=43.94;MQRankSum=1.118;QD=1.92;ReadPosRankSum=-3.359;SOR=2.602 GT:AD:DP:GQ:PL 0/1:108,22:130:99:287,0,3037 15 30385131 rs200787314 G T 629.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.826;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=34.341;MLEAC=1;MLEAF=0.5;MQ=32.13;MQRankSum=-1.826;QD=4.26;ReadPosRankSum=0.721;SOR=4.123 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,25:148:99:0|1:30385131_G_T:658,0,6764 15 30385142 rs201425128 G A 621.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.803;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=32.369;MLEAC=1;MLEAF=0.5;MQ=32.04;MQRankSum=-1.421;QD=4.41;ReadPosRankSum=-0.791;SOR=4.133 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,24:141:99:0|1:30385131_G_T:650,0,6620 15 30385532 . T C 1239.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0;DP=463;ExcessHet=3.0103;FS=16.283;MLEAC=1;MLEAF=0.5;MQ=35.41;MQRankSum=-7.371;QD=2.68;ReadPosRankSum=-2.963;SOR=1.852 GT:AD:DP:GQ:PL 0/1:363,100:463:99:1268,0,8836 15 30654736 rs201668516 G A 67.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=22.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 15 30696687 rs193209666 G C 197.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=23.51;QD=24.72;SOR=4.407 GT:AD:DP:GQ:PL 1/1:0,8:8:24:226,24,0 15 30696714 rs201102961 T C 368.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.051;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27.02;MQRankSum=-0.772;QD=9.7;ReadPosRankSum=-1.426;SOR=0.598 GT:AD:DP:GQ:PL 0/1:20,18:38:99:397,0,459 15 30699639 rs200116715 A C 897.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.98;QD=34.53;SOR=6.593 GT:AD:DP:GQ:PL 1/1:0,26:26:78:926,78,0 15 30699739 rs372054611 G C 177.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.952;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=32.38;MQRankSum=1.878;QD=2.96;ReadPosRankSum=0.028;SOR=0.374 GT:AD:DP:GQ:PL 0/1:50,10:60:99:206,0,1567 15 30700159 rs62016504 A G 5252.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.029;ClippingRankSum=0;DB;DP=585;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.5;MQ=55.32;MQRankSum=-22.041;QD=8.98;ReadPosRankSum=0.092;SOR=0.915 GT:AD:DP:GQ:PGT:PID:PL 0/1:421,164:585:99:0|1:30700159_A_G:5281,0,20689 15 30700168 . C CTTG 4952.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.123;ClippingRankSum=0;DP=565;ExcessHet=3.0103;FS=5.93;MLEAC=1;MLEAF=0.5;MQ=55.25;MQRankSum=-21.917;QD=8.77;ReadPosRankSum=2.743;SOR=1.188 GT:AD:DP:GQ:PGT:PID:PL 0/1:418,147:565:99:0|1:30700159_A_G:4990,0,20700 15 30700618 . G A 136.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.547;ClippingRankSum=-0;DP=12;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=25.72;MQRankSum=-0.812;QD=11.4;ReadPosRankSum=-0.998;SOR=2.419 GT:AD:DP:GQ:PL 0/1:5,7:12:99:165,0,124 15 30899125 rs199946553 G A 3432.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.5;MQ=36.04;MQRankSum=-1.89;QD=11.29;ReadPosRankSum=-0.436;SOR=0.87 GT:AD:DP:GQ:PL 0/1:141,163:304:99:3461,0,2822 15 30899336 rs367896270 G C 1113.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.28;QD=27.84;SOR=7.428 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1142,120,0 15 30900873 rs201314562 T C 2329.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.11;QD=32.36;SOR=1.675 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2358,216,0 15 30900895 rs80198225 G A 1003.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=6.909;MLEAC=1;MLEAF=0.5;MQ=30.27;MQRankSum=2.001;QD=15.68;ReadPosRankSum=1.228;SOR=0.425 GT:AD:DP:GQ:PL 0/1:26,38:64:99:1032,0,617 15 30902964 . G C 383.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=24.65;QD=27.41;SOR=5.421 GT:AD:DP:GQ:PL 1/1:0,14:14:42:412,42,0 15 30905994 rs199794386 G A 4463.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.53;MQRankSum=-4.715;QD=13.53;ReadPosRankSum=0.884;SOR=0.677 GT:AD:DP:GQ:PL 0/1:138,192:330:99:4492,0,2985 15 30906066 rs199529707 T C 1114.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.066;ClippingRankSum=0;DB;DP=474;ExcessHet=3.0103;FS=3.273;MLEAC=1;MLEAF=0.5;MQ=39.92;MQRankSum=-7.53;QD=2.36;ReadPosRankSum=4.895;SOR=1.011 GT:AD:DP:GQ:PL 0/1:380,93:473:99:1143,0,8913 15 30906165 rs200113015 T C 1781.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.704;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=31.18;MQRankSum=2.675;QD=6;ReadPosRankSum=-1.093;SOR=0.671 GT:AD:DP:GQ:PL 0/1:202,95:297:99:1810,0,4690 15 30906259 . G T 1384.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.072;ClippingRankSum=0;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27.1;MQRankSum=1.149;QD=12.36;ReadPosRankSum=-0.082;SOR=0.651 GT:AD:DP:GQ:PL 0/1:51,61:112:99:1413,0,1082 15 30906401 rs367856774 C T 1385.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.876;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=8.591;MLEAC=1;MLEAF=0.5;MQ=27.38;MQRankSum=0.336;QD=8.83;ReadPosRankSum=-0.181;SOR=1.337 GT:AD:DP:GQ:PL 0/1:89,68:157:99:1414,0,2034 15 30906604 rs200366557 G C 2595.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.167;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.5;MQ=32.85;MQRankSum=-0.829;QD=11.34;ReadPosRankSum=0.73;SOR=0.597 GT:AD:DP:GQ:PL 0/1:120,109:229:99:2624,0,3079 15 31234064 rs6493352 C T 2645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.872;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-1.532;SOR=0.75 GT:AD:DP:GQ:PL 0/1:135,112:247:99:2674,0,3247 15 31294159 rs61734295 C T 1899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.381;SOR=0.347 GT:AD:DP:GQ:PL 0/1:90,82:172:99:1928,0,2268 15 31294343 rs12898290 A T 2299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.039;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-0.782;SOR=0.793 GT:AD:DP:GQ:PL 0/1:134,99:233:99:2328,0,3193 15 31294714 rs3784589 C A 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.649;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.133;SOR=0.664 GT:AD:DP:GQ:PL 0/1:95,85:180:99:1983,0,2682 15 31330280 rs2288242 A G 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.575;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.992;SOR=0.547 GT:AD:DP:GQ:PL 0/1:74,64:138:99:1606,0,1765 15 31342744 rs1035705 C T 3247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.06;ReadPosRankSum=0.099;SOR=0.602 GT:AD:DP:GQ:PL 0/1:103,128:231:99:3276,0,2424 15 31362352 rs2241493 C T 5907.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5936,581,0 15 31369123 rs4779816 A G 2036.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.52;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2065,222,0 15 31619607 rs11537749 G A 1917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=0.571;SOR=0.653 GT:AD:DP:GQ:PL 0/1:56,79:135:99:1946,0,1366 15 31776021 rs2338681 T C 382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.203;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.96;ReadPosRankSum=-2.553;SOR=0.678 GT:AD:DP:GQ:PL 0/1:35,20:55:99:411,0,821 15 31793930 rs7164569 A G 3038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.948;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=1.439;SOR=0.765 GT:AD:DP:GQ:PL 0/1:127,134:261:99:3067,0,2711 15 32393486 rs201765366 C CT,CTT 850.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=4.244;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.26;MQRankSum=0.69;QD=12.89;ReadPosRankSum=-1.101;SOR=0.29 GT:AD:DP:GQ:PL 1/2:14,30,22:78:99:888,129,309,214,0,669 15 32450704 rs201822909 G A 4761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0;DB;DP=464;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40.41;MQRankSum=-1.51;QD=10.26;ReadPosRankSum=-0.888;SOR=0.711 GT:AD:DP:GQ:PL 0/1:234,230:464:99:4790,0,4969 15 32460419 . C T 3708.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.579;ClippingRankSum=0;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.91;MQRankSum=-0.983;QD=20.6;ReadPosRankSum=0.757;SOR=2.329 GT:AD:DP:GQ:PL 0/1:44,136:180:99:3737,0,813 15 32685177 rs200858050 A G 584.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.929;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=6.871;MLEAC=1;MLEAF=0.5;MQ=36.61;MQRankSum=-2.281;QD=3.01;ReadPosRankSum=4.287;SOR=1.397 GT:AD:DP:GQ:PL 0/1:160,34:194:99:613,0,4639 15 32685243 rs201263042 C G 1642.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.587;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=209.175;MLEAC=1;MLEAF=0.5;MQ=28.71;MQRankSum=5.443;QD=10.27;ReadPosRankSum=2.002;SOR=5.924 GT:AD:DP:GQ:PL 0/1:101,59:160:99:1671,0,3120 15 32685253 rs370189764 G A 1102.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-8.466;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=42.851;MLEAC=1;MLEAF=0.5;MQ=27.93;MQRankSum=-3.8;QD=6.53;ReadPosRankSum=0.025;SOR=3.44 GT:AD:DP:GQ:PGT:PID:PL 0/1:132,37:169:99:0|1:32685253_G_A:1131,0,5513 15 32685258 rs374107209 C T 1174.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-9.633;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=49.94;MLEAC=1;MLEAF=0.5;MQ=27.5;MQRankSum=-3.703;QD=6.67;ReadPosRankSum=0.014;SOR=3.636 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,41:176:99:0|1:32685253_G_A:1203,0,5427 15 32685277 rs201995807 A G 980.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=260.426;MLEAC=1;MLEAF=0.5;MQ=26.46;MQRankSum=5.391;QD=5.22;ReadPosRankSum=-1.985;SOR=6.314 GT:AD:DP:GQ:PL 0/1:141,47:188:99:1009,0,3408 15 32685294 rs372007246 C T 282.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.635;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.5;MQ=25.48;MQRankSum=0.19;QD=1.5;ReadPosRankSum=1.07;SOR=0.834 GT:AD:DP:GQ:PL 0/1:159,30:189:99:311,0,3860 15 32685488 . C A 150.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23.27;MQRankSum=-1.998;QD=1.73;ReadPosRankSum=-2.007;SOR=0.478 GT:AD:DP:GQ:PL 0/1:70,17:87:99:179,0,1593 15 32685576 . A T 1190.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.409;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=15.094;MLEAC=2;MLEAF=1;MQ=24.51;MQRankSum=0.079;QD=22.47;ReadPosRankSum=-0.189;SOR=4.486 GT:AD:DP:GQ:PL 1/1:3,50:53:76:1219,76,0 15 32685750 . T C 122.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.079;ClippingRankSum=0;DP=67;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.5;MQ=30.58;MQRankSum=-0.763;QD=1.83;ReadPosRankSum=-0.71;SOR=1.291 GT:AD:DP:GQ:PL 0/1:56,11:67:99:151,0,1336 15 32686392 rs200133841 T C 5889.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.68;QD=28.45;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5918,620,0 15 32686927 rs370517774 C A 436.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.51;QD=29.12;SOR=5.549 GT:AD:DP:GQ:PL 1/1:0,15:15:45:465,45,0 15 32688588 rs201984660 T C 337.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.77;MQRankSum=-12.145;QD=1.41;ReadPosRankSum=-0.951;SOR=0.041 GT:AD:DP:GQ:PL 0/1:200,40:240:99:366,0,5196 15 32689130 rs369957455 T G 129.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.623;ClippingRankSum=-0;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23.79;MQRankSum=0.344;QD=9.27;ReadPosRankSum=-0;SOR=0.693 GT:AD:DP:GQ:PL 0/1:7,7:14:99:158,0,157 15 32689500 . A T 70.28 SNP_MQ_filter AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.85;QD=23.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:98,9,0 15 32889941 rs369594254 C T 315.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.715;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.16;MQRankSum=-1.436;QD=11.28;ReadPosRankSum=1.69;SOR=0.197 GT:AD:DP:GQ:PL 0/1:14,14:28:99:344,0,386 15 32895892 . A T 42.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24;MQRankSum=-0;QD=8.55;ReadPosRankSum=-0;SOR=1.022 GT:AD:DP:GQ:PL 0/1:2,3:5:42:71,0,42 15 33091079 rs7162695 A G 1485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.2;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.452;SOR=0.667 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1514,0,1605 15 33191023 rs173224 A G 1985.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2014,204,0 15 33261232 rs2930131 G A 568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.47;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.82;SOR=0.286 GT:AD:DP:GQ:PL 0/1:33,19:52:99:597,0,1052 15 33357262 rs2306277 A G 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.08;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.43;ReadPosRankSum=0.361;SOR=0.512 GT:AD:DP:GQ:PL 0/1:30,50:80:99:1183,0,612 15 33359574 rs11858145 C A 2464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.357;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-1.293;SOR=0.64 GT:AD:DP:GQ:PL 0/1:102,101:203:99:2493,0,2702 15 33443441 rs201682671 C T 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.61;SOR=0.728 GT:AD:DP:GQ:PL 0/1:60,59:119:99:1512,0,1590 15 33446879 rs1399077 G T 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=0.108;SOR=0.811 GT:AD:DP:GQ:PL 0/1:106,95:201:99:2294,0,2669 15 33446947 rs1399078 A C 2236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.396;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=3.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-1.524;SOR=0.533 GT:AD:DP:GQ:PL 0/1:114,91:205:99:2265,0,2856 15 33795950 rs3751634 G A 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.23;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.237;SOR=0.659 GT:AD:DP:GQ:PL 0/1:40,44:84:99:944,0,927 15 33840414 rs1435100 A G 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.96;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.877;SOR=0.353 GT:AD:DP:GQ:PL 0/1:36,53:89:99:1123,0,760 15 33872177 rs674155 C T 1060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.727;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=6.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-1.807;SOR=1.299 GT:AD:DP:GQ:PL 0/1:70,44:114:99:1089,0,1761 15 33893769 rs2437135 C T 2622.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.51;ReadPosRankSum=1.507;SOR=0.27 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2651,242,0 15 33905410 rs2229116 A G 1636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-2.843;SOR=0.765 GT:AD:DP:GQ:PL 0/1:76,72:148:99:1665,0,1745 15 33951910 rs2279662 T C 740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.47;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-1.081;SOR=1.112 GT:AD:DP:GQ:PL 0/1:24,30:54:99:769,0,562 15 33954652 rs4780144 C T 6279.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6308,614,0 15 34014913 rs2293028 C T 1426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.434;SOR=0.979 GT:AD:DP:GQ:PL 0/1:56,60:116:99:1455,0,1458 15 34016274 rs6495228 G A 718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=0.792;SOR=0.824 GT:AD:DP:GQ:PL 0/1:41,34:75:99:747,0,994 15 34080645 rs61996336 C T 1804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.745;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=2.424;SOR=0.976 GT:AD:DP:GQ:PL 0/1:88,78:166:99:1833,0,1977 15 34113454 rs35254800 AT A 2150.73 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=26.55;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2188,248,0 15 34113536 rs2288614 A G 3784.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=27.63;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3813,410,0 15 34152777 rs2303310 T A 711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.05;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-1.405;SOR=0.859 GT:AD:DP:GQ:PL 0/1:30,33:63:99:740,0,667 15 34159969 rs61729120 C A 2941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.23;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=3.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.167;SOR=0.932 GT:AD:DP:GQ:PL 0/1:127,126:253:99:2970,0,3172 15 34528948 rs4577050 G A 2068.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2097,207,0 15 34640218 rs374230 C T 4056.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=1.665 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4085,390,0 15 34640378 rs430083 T C 6244.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6273,580,0 15 34656524 rs6495665 T C 626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.604;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-1.293;SOR=1.064 GT:AD:DP:GQ:PL 0/1:33,27:60:99:655,0,736 15 34673722 rs76522922 C T 3649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.015;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.5;MQ=45.26;MQRankSum=-10.22;QD=9.1;ReadPosRankSum=1.958;SOR=0.841 GT:AD:DP:GQ:PL 0/1:206,195:401:99:3678,0,4598 15 34673827 rs137960347 G A 191.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.187;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=54.563;MLEAC=1;MLEAF=0.5;MQ=43.86;MQRankSum=-5.041;QD=1.37;ReadPosRankSum=-3.906;SOR=6.091 GT:AD:DP:GQ:PL 0/1:120,20:140:99:220,0,3324 15 34678911 rs147828722 C G 406.77 SNP_QD_filter;SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.573;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=89.435;MLEAC=1;MLEAF=0.5;MQ=27.68;MQRankSum=-1.236;QD=1.56;ReadPosRankSum=0.364;SOR=6.965 GT:AD:DP:GQ:PL 0/1:221,39:260:99:435,0,6174 15 34820194 rs200975425 C T 851.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.569;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=28.97;MQRankSum=0;QD=7.67;ReadPosRankSum=-2.667;SOR=0.24 GT:AD:DP:GQ:PL 0/1:73,38:111:99:880,0,2009 15 34820227 . C T 313.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.863;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27.41;MQRankSum=-0.328;QD=4.83;ReadPosRankSum=-1.396;SOR=0.127 GT:AD:DP:GQ:PL 0/1:48,17:65:99:342,0,1349 15 34820269 rs142225671 G A 633.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.848;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=27.31;MQRankSum=0.045;QD=18.11;ReadPosRankSum=-0.731;SOR=1.885 GT:AD:DP:GQ:PL 0/1:10,25:35:99:662,0,213 15 34825132 rs199645647 C G 810.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.06;QD=30.03;SOR=6.666 GT:AD:DP:GQ:PL 1/1:0,27:27:81:839,81,0 15 35045057 rs3743123 G A 5044.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5073,516,0 15 35045312 rs651724 T A 5788.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5817,557,0 15 35149008 rs8035240 C T 4902.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=1.451 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4931,474,0 15 35174691 rs147851674 A G 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.954;QD=13.01;ReadPosRankSum=0.963;SOR=0.952 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1095,0,806 15 35174718 rs17237242 G A 1297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.017;QD=11;ReadPosRankSum=2.213;SOR=0.913 GT:AD:DP:GQ:PL 0/1:59,59:118:99:1326,0,1439 15 35207397 rs2044920 C G 710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.289;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.33;ReadPosRankSum=0.399;SOR=0.714 GT:AD:DP:GQ:PL 0/1:62,35:97:99:739,0,1570 15 35230934 rs10701045 A ATAGT 1009.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.669;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=0.341;SOR=0.618 GT:AD:DP:GQ:PL 0/1:45,28:73:99:1047,0,2293 15 35273620 rs4923849 C T 4708.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4737,491,0 15 35664406 rs141638132 TA T 864.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=7.452;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=1.686;QD=10.29;ReadPosRankSum=-0.954;SOR=0.251 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,44:84:99:0|1:35664406_TA_T:902,0,853 15 36937405 rs11073191 G T 1839.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1868,192,0 15 36946303 rs3784678 C G 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.621;SOR=1.005 GT:AD:DP:GQ:PL 0/1:44,42:86:99:952,0,1006 15 38230437 rs11366248 GA G 690.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=2.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.64;ReadPosRankSum=0.524;SOR=0.868 GT:AD:DP:GQ:PL 0/1:66,38:104:99:728,0,1658 15 38233869 rs2937991 T C 2561.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2590,261,0 15 38614525 rs7182445 G A 3568.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3597,376,0 15 38631920 rs7179118 G A 4173.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.88;SOR=1.739 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,93:93:99:1|1:38631920_G_A:4202,283,0 15 38631930 rs7180446 C A 4558.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.01;SOR=1.747 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,106:106:99:1|1:38631920_G_A:4587,319,0 15 38643574 rs3751526 T C 5214.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5243,500,0 15 38794566 rs12324402 A G 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=1.71;SOR=0.594 GT:AD:DP:GQ:PL 0/1:60,47:107:99:1059,0,1435 15 38988815 rs7165988 C G 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.814;SOR=0.47 GT:AD:DP:GQ:PL 0/1:65,58:123:99:1341,0,1752 15 39879717 rs2229364 G A 5134.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.489 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5163,516,0 15 39880358 rs2228261 C T 5868.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5897,584,0 15 39880822 rs2292305 A G 5947.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5976,620,0 15 39910052 rs16969386 C G 4173.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4202,402,0 15 39910404 rs12908846 G A 2741.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2770,282,0 15 39910431 rs10152640 A G 2223.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2252,225,0 15 40005793 . G GA 46.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DP=118;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.643;QD=0.48;ReadPosRankSum=-1.076;SOR=1.005 GT:AD:DP:GQ:PL 0/1:82,15:106:84:84,0,1648 15 40226495 rs566792 T C 8486.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.38;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.27;ReadPosRankSum=0.748;SOR=0.229 GT:AD:DP:GQ:PL 1/1:1,262:263:99:8515,753,0 15 40265799 rs2307105 A G 1049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.883;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=0.968;SOR=0.939 GT:AD:DP:GQ:PL 0/1:75,47:122:99:1078,0,1764 15 40268998 . G GGACGAC 5848.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.12;ClippingRankSum=0;DP=311;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.5;MQ=61.1;MQRankSum=5.782;QD=19.76;ReadPosRankSum=-0.624;SOR=0.727 GT:AD:DP:GQ:PL 0/1:143,153:296:99:5886,0,7224 15 40299200 rs143968955 TTTTG T 661.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.814;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.484;QD=10.67;ReadPosRankSum=-0.915;SOR=0.903 GT:AD:DP:GQ:PL 0/1:42,20:62:99:699,0,2305 15 40308859 rs35602605 G T 1758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.278;SOR=0.965 GT:AD:DP:GQ:PL 0/1:64,71:135:99:1787,0,1563 15 40313083 rs12916520 G T 3526.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3555,372,0 15 40322552 rs2250402 G T 3582.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3611,363,0 15 40328575 rs7535 G C 7504.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=29.9;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7533,752,0 15 40328665 rs8208 G A 5864.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=1.461 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5893,601,0 15 40330564 rs7321 C T 3107.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3136,324,0 15 40477831 rs1801376 G A 1485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=3.13;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.946;SOR=0.474 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1514,0,1514 15 40488851 rs1047130 G A 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.022;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=1.013;SOR=0.667 GT:AD:DP:GQ:PL 0/1:76,77:153:99:1738,0,1712 15 40500986 rs11630664 C T 1319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=4.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-2.429;SOR=1.091 GT:AD:DP:GQ:PL 0/1:45,54:99:99:1348,0,1159 15 40564576 rs3743137 C T 2751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.634;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=5.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.074;SOR=0.517 GT:AD:DP:GQ:PL 0/1:142,114:256:99:2780,0,3523 15 40565055 rs2253603 G A 1805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.382;SOR=0.984 GT:AD:DP:GQ:PL 0/1:84,74:158:99:1834,0,2236 15 40573716 rs4924446 A G 5363.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5392,500,0 15 40583458 rs936209 A G 5967.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5996,555,0 15 40583560 rs62021888 G T 2789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=5.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.802;SOR=0.936 GT:AD:DP:GQ:PL 0/1:124,116:240:99:2818,0,3100 15 40589002 rs2229691 A G 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-1.664;SOR=0.451 GT:AD:DP:GQ:PL 0/1:76,95:171:99:2369,0,1953 15 40590134 rs2229690 G A 458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.66;ReadPosRankSum=0.223;SOR=0.81 GT:AD:DP:GQ:PL 0/1:56,25:81:99:487,0,1561 15 40595565 rs2305645 C T 631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8;ReadPosRankSum=-0.115;SOR=0.772 GT:AD:DP:GQ:PL 0/1:44,35:79:99:660,0,1124 15 40627845 rs55641696 G A 2437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.183;SOR=0.939 GT:AD:DP:GQ:PL 0/1:94,97:191:99:2466,0,2356 15 40629995 rs149438052 G T 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.699;SOR=0.635 GT:AD:DP:GQ:PL 0/1:98,90:188:99:2100,0,2412 15 40655845 rs1898883 C G 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.7;SOR=0.661 GT:AD:DP:GQ:PL 0/1:103,82:185:99:2113,0,2885 15 40655873 rs1898882 G C 2855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.74;SOR=0.776 GT:AD:DP:GQ:PL 0/1:134,113:247:99:2884,0,3578 15 40657027 . T A 1220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=0.858;SOR=0.634 GT:AD:DP:GQ:PL 0/1:43,49:92:99:1249,0,1062 15 40659476 rs35043215 G A 3839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.714;SOR=0.67 GT:AD:DP:GQ:PL 0/1:159,157:316:99:3868,0,4024 15 40699940 rs2289331 T C 1258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.351;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.364;SOR=0.631 GT:AD:DP:GQ:PL 0/1:60,62:122:99:1287,0,1411 15 40751555 rs3803357 C A 3719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.875;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.16;SOR=0.801 GT:AD:DP:GQ:PL 0/1:154,154:308:99:3748,0,4154 15 40758337 rs3743145 A C 2232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.445;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.54;ReadPosRankSum=-0.918;SOR=0.46 GT:AD:DP:GQ:PL 0/1:59,76:135:99:2261,0,1489 15 40855210 rs10152546 T A 1871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.649;SOR=0.862 GT:AD:DP:GQ:PL 0/1:95,78:173:99:1900,0,2306 15 40856989 rs3803354 C T 5091.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5120,521,0 15 40862064 rs1058734 C T 2231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.251;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-1.622;SOR=0.72 GT:AD:DP:GQ:PL 0/1:106,93:199:99:2260,0,2625 15 40898643 rs7177192 G C 1679.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1708,174,0 15 40903684 rs12911738 A G 149.84 PASS AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.97;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,6:6:18:178,18,0 15 40913840 rs2412541 G T 2718.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2747,270,0 15 40914177 rs11858113 T C 1206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.781;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=0.015;SOR=0.702 GT:AD:DP:GQ:PL 0/1:79,50:129:99:1235,0,1901 15 40914772 rs11855334 C T 1372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.315;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=-0.562;SOR=0.698 GT:AD:DP:GQ:PL 0/1:95,65:160:99:1401,0,2240 15 40915045 rs8041534 T G 1192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.915;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=-0.741;SOR=0.716 GT:AD:DP:GQ:PL 0/1:31,46:77:99:1221,0,696 15 40915190 rs8040502 A G 3600.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3629,342,0 15 40915894 rs11070285 T C 1522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.066;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.615;SOR=0.763 GT:AD:DP:GQ:PL 0/1:58,58:116:99:1551,0,1383 15 40916237 rs17747633 A G 1421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.294;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-1.327;SOR=0.722 GT:AD:DP:GQ:PL 0/1:90,59:149:99:1450,0,2350 15 41066625 rs117485355 C G 1606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1.328;SOR=0.633 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1635,0,1958 15 41099899 rs142730574 T TGGGGC 2416.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=14.116;MLEAC=1;MLEAF=0.5;MQ=60.87;MQRankSum=0;QD=9.22;ReadPosRankSum=1.952;SOR=1.373 GT:AD:DP:GQ:PL 0/1:163,99:262:99:2454,0,8483 15 41105926 rs690347 T G 4040.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4069,401,0 15 41136885 rs11549914 C T 2540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=11.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=0.813;SOR=1.273 GT:AD:DP:GQ:PL 0/1:156,109:265:99:2569,0,4173 15 41146581 rs3736287 T C 5579.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=1.442 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5608,531,0 15 41148199 rs659232 C T 6447.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6476,639,0 15 41149161 rs690458 G C 7827.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7856,750,0 15 41245676 rs11557249 G A 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=-1.119;SOR=1.048 GT:AD:DP:GQ:PL 0/1:83,49:132:99:1236,0,2332 15 41364265 . TA T 146.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=8.724;MLEAC=1;MLEAF=0.5;MQ=60.81;MQRankSum=1.931;QD=5.06;ReadPosRankSum=0.19;SOR=0.093 GT:AD:DP:GQ:PL 0/1:18,11:34:99:184,0,396 15 41476209 rs522063 T C 5062.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5091,490,0 15 41483631 rs11371504 T TA 4934.73 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=44.46;SOR=1.042 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,111:111:99:1|1:41483631_T_TA:4972,334,0 15 41483636 rs2412609 C T 5054.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=45.13;SOR=0.97 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,112:112:99:1|1:41483631_T_TA:5083,346,0 15 41509288 rs7173086 T A 876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=7.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.744;SOR=0.432 GT:AD:DP:GQ:PL 0/1:34,38:72:99:905,0,870 15 41813279 rs3743031 C T 5310.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5339,540,0 15 41815516 rs8027526 G C 2687.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2716,273,0 15 41819367 rs11630901 T C 2057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.639;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=8.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=0.444;SOR=1.221 GT:AD:DP:GQ:PL 0/1:77,80:157:99:2086,0,1828 15 41829230 rs721772 A G 6320.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6349,612,0 15 41857216 rs11639399 G A 2909.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2938,303,0 15 41860411 rs7171675 G A 4838.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4867,500,0 15 41860490 rs12148316 T A 5282.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5311,541,0 15 41991315 rs2178004 A T 4274.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4303,429,0 15 42026764 rs1918314 C T 2432.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.65;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2461,262,0 15 42032383 rs17677991 C G 2724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=2.024;SOR=0.585 GT:AD:DP:GQ:PL 0/1:96,114:210:99:2753,0,2265 15 42041712 rs2695163 G A 5898.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5927,582,0 15 42105918 rs1201689 C G 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.822;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.148;SOR=0.751 GT:AD:DP:GQ:PL 0/1:79,108:187:99:2499,0,1976 15 42106923 rs75869993 G A 1771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.44;ReadPosRankSum=0.576;SOR=0.702 GT:AD:DP:GQ:PL 0/1:128,82:210:99:1800,0,3306 15 42109223 rs1197689 T C 7739.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7768,735,0 15 42114414 rs2303517 C T 3627.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.651 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3656,341,0 15 42115426 rs1197688 A G 5996.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.66;SOR=1.212 GT:AD:DP:GQ:PL 1/1:0,173:173:99:6025,520,0 15 42115747 rs3959569 G C 3396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.77;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.296;SOR=0.788 GT:AD:DP:GQ:PL 0/1:151,138:289:99:3425,0,3617 15 42129158 rs890505 G A 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.897;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=0.084;SOR=0.934 GT:AD:DP:GQ:PL 0/1:92,71:163:99:1806,0,2334 15 42129373 rs11547012 C G 1092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.84;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-0.136;SOR=0.602 GT:AD:DP:GQ:PL 0/1:35,47:82:99:1121,0,824 15 42134371 rs1648834 G C 5373.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.8;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5402,477,0 15 42134468 rs141857655 G A 2685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.749;SOR=0.633 GT:AD:DP:GQ:PL 0/1:135,120:255:99:2714,0,3125 15 42135988 rs1672466 C T 12618.8 PASS AC=2;AF=1;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,443:443:99:12647,1322,0 15 42137282 rs1648829 G A 9871.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9900,922,0 15 42138456 rs1197669 G A 4372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.821;SOR=0.636 GT:AD:DP:GQ:PL 0/1:188,184:372:99:4401,0,4383 15 42139038 rs890508 G A 8374.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8403,833,0 15 42143145 rs58422701 C CCA 7098.73 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.28;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,164:164:99:7136,499,0 15 42143251 rs28627803 G A 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.433;QD=10.98;ReadPosRankSum=-1.377;SOR=0.902 GT:AD:DP:GQ:PL 0/1:97,96:193:99:2148,0,2336 15 42143533 rs1197665 T G 3267.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3296,312,0 15 42145936 rs1197660 G C 1766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.883;SOR=0.678 GT:AD:DP:GQ:PL 0/1:106,85:191:99:1795,0,2602 15 42147639 rs2305655 A C 2197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.2;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.293;SOR=0.697 GT:AD:DP:GQ:PL 0/1:95,83:178:99:2226,0,2639 15 42148800 rs56230030 C T 699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.65;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.14;ReadPosRankSum=-1.248;SOR=0.99 GT:AD:DP:GQ:PL 0/1:78,36:114:99:728,0,2160 15 42149596 rs1197675 C G 3736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.12;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=0.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.076;SOR=0.659 GT:AD:DP:GQ:PL 0/1:182,154:336:99:3765,0,4596 15 42150888 rs890503 G A 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.92;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-1.674;SOR=0.689 GT:AD:DP:GQ:PL 0/1:94,106:200:99:2357,0,2355 15 42159290 rs2290553 C T 3520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.677;SOR=0.634 GT:AD:DP:GQ:PL 0/1:121,147:268:99:3549,0,2773 15 42168400 rs2290559 C T 2998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.38;SOR=0.804 GT:AD:DP:GQ:PL 0/1:137,129:266:99:3027,0,3390 15 42171462 rs12708402 C T 2625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.292;SOR=0.579 GT:AD:DP:GQ:PL 0/1:90,103:193:99:2654,0,2370 15 42171537 rs1197683 A G 3311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.953;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=0.018;SOR=0.736 GT:AD:DP:GQ:PL 0/1:129,132:261:99:3340,0,3094 15 42178155 rs1210795 T C 4367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.215;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=5.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-0.129;SOR=0.923 GT:AD:DP:GQ:PL 0/1:142,176:318:99:4396,0,3197 15 42211486 rs1704396 A G 3303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.87;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-1.171;SOR=0.766 GT:AD:DP:GQ:PL 0/1:142,127:269:99:3332,0,3444 15 42235316 rs11549015 C T 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.139;SOR=0.613 GT:AD:DP:GQ:PL 0/1:65,84:149:99:1959,0,1431 15 42287578 rs1668586 G A 6935.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6964,700,0 15 42360950 rs750051 C T 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.961;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.638;SOR=1.121 GT:AD:DP:GQ:PL 0/1:119,80:199:99:1920,0,2802 15 42361022 rs750052 C T 2485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.144;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.736;SOR=0.565 GT:AD:DP:GQ:PL 0/1:120,111:231:99:2514,0,2700 15 42362089 rs113792982 T C 2740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.501;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.903;SOR=0.732 GT:AD:DP:GQ:PL 0/1:111,109:220:99:2769,0,2660 15 42363012 rs17690899 G C 3116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-1.196;SOR=0.763 GT:AD:DP:GQ:PL 0/1:146,132:278:99:3145,0,3478 15 42363043 rs74678783 T G 3118.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=3.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.101;SOR=0.701 GT:AD:DP:GQ:PL 0/1:153,137:290:99:3147,0,3472 15 42363078 rs77186114 T C 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.057;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=1.347;SOR=0.448 GT:AD:DP:GQ:PL 0/1:111,107:218:99:2794,0,2691 15 42363395 rs78165678 C T 2944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.49;SOR=0.807 GT:AD:DP:GQ:PL 0/1:156,133:289:99:2973,0,3947 15 42363480 rs17747505 G A 2688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=1.18;SOR=0.69 GT:AD:DP:GQ:PL 0/1:114,111:225:99:2717,0,2980 15 42363769 rs1668589 A G 834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.873;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.155;SOR=0.57 GT:AD:DP:GQ:PL 0/1:38,30:68:99:863,0,969 15 42377744 rs605253 C G 703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.415;SOR=0.523 GT:AD:DP:GQ:PL 0/1:38,31:69:99:732,0,1084 15 42379594 rs4924619 G A 2107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.109;SOR=0.679 GT:AD:DP:GQ:PL 0/1:116,99:215:99:2136,0,2643 15 42386630 rs75734921 G T 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=-0.541;SOR=0.713 GT:AD:DP:GQ:PL 0/1:76,58:134:99:1276,0,1926 15 42434837 rs1356410 T C 2098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=1.324;SOR=0.694 GT:AD:DP:GQ:PL 0/1:99,87:186:99:2127,0,2464 15 42439376 rs4923929 G A 2733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.584;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.382;SOR=0.658 GT:AD:DP:GQ:PL 0/1:92,116:208:99:2762,0,2327 15 42503953 rs367909084 GA G 88.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.549;QD=1.22;ReadPosRankSum=0.631;SOR=0.604 GT:AD:DP:GQ:PL 0/1:58,15:83:99:126,0,1444 15 42553218 rs5812215 AT A 1194.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.294;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.54;ReadPosRankSum=1.098;SOR=0.9 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1232,103,0 15 42565588 rs2277533 C A 2188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.072;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.051;SOR=0.744 GT:AD:DP:GQ:PL 0/1:109,87:196:99:2217,0,2817 15 42568547 rs8043515 C G 807.77 PASS AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,26:26:78:836,78,0 15 42570718 rs8024732 A G 2512.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2541,255,0 15 42579948 rs8037627 T C 2907.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2936,308,0 15 42714195 . G GA 62.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.86;ReadPosRankSum=0.822;SOR=0.36 GT:AD:DP:GQ:PL 0/1:61,12:81:99:100,0,1322 15 42820451 rs9302112 C T 2895.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2924,294,0 15 42930891 rs1197550 A T 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.29;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.148;SOR=0.993 GT:AD:DP:GQ:PL 0/1:47,50:97:99:1209,0,1039 15 42977526 rs6493059 A C 2441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.253;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-2.246;SOR=0.622 GT:AD:DP:GQ:PL 0/1:120,97:217:99:2470,0,3076 15 42981022 rs28744617 A G 2028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.91;SOR=0.669 GT:AD:DP:GQ:PL 0/1:83,84:167:99:2057,0,2099 15 43017426 rs16957091 T G 1073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.593;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=4.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=0.279;SOR=0.857 GT:AD:DP:GQ:PL 0/1:55,46:101:99:1102,0,1225 15 43028592 rs7167392 G A 1505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.893;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-1.062;SOR=0.476 GT:AD:DP:GQ:PL 0/1:87,63:150:99:1534,0,2737 15 43028749 rs4265781 T A 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=6.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.24;SOR=0.803 GT:AD:DP:GQ:PL 0/1:98,96:194:99:2333,0,2645 15 43044852 rs56307230 T C 2057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.272;SOR=0.826 GT:AD:DP:GQ:PL 0/1:92,86:178:99:2086,0,2312 15 43170793 rs6493068 A G 2465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-1.645;QD=10.81;ReadPosRankSum=0.125;SOR=0.656 GT:AD:DP:GQ:PL 0/1:120,108:228:99:2494,0,2811 15 43237572 rs16957277 T C 3011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.299;SOR=0.628 GT:AD:DP:GQ:PL 0/1:120,126:246:99:3040,0,2750 15 43256121 rs2054389 T C 1409.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1438,147,0 15 43352041 rs4924704 G A 2617.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.32;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2646,243,0 15 43545728 rs555001 G A 2527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.613;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=0.879;SOR=0.646 GT:AD:DP:GQ:PL 0/1:96,106:202:99:2556,0,2215 15 43571390 rs567357 C G 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.601;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=-0.701;SOR=0.676 GT:AD:DP:GQ:PL 0/1:111,84:195:99:1877,0,2614 15 43579566 rs513970 A G 3332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=1.807;SOR=0.723 GT:AD:DP:GQ:PL 0/1:166,154:320:99:3361,0,3727 15 43621947 rs3742969 A G 3331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.225;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.5;ReadPosRankSum=-1.241;SOR=0.633 GT:AD:DP:GQ:PL 0/1:95,120:215:99:3360,0,2184 15 43632549 rs2278857 T C 1456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.364;SOR=0.569 GT:AD:DP:GQ:PL 0/1:55,68:123:99:1485,0,1137 15 43661802 rs3809482 T C 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.504;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=8.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-1.769;SOR=1.356 GT:AD:DP:GQ:PL 0/1:62,68:130:99:1735,0,1508 15 43678543 rs4608311 G A 462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=3.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=-0.702;SOR=1.802 GT:AD:DP:GQ:PL 0/1:12,18:30:99:491,0,254 15 43701946 rs56813954 TA T 319.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=-0.791;SOR=0.324 GT:AD:DP:GQ:PL 0/1:18,18:38:99:357,0,368 15 43720197 rs550239 C T 521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.45;ReadPosRankSum=-0.705;SOR=0.85 GT:AD:DP:GQ:PL 0/1:44,26:70:99:550,0,1143 15 43724646 rs2602141 T G 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.473;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.79;SOR=0.791 GT:AD:DP:GQ:PL 0/1:79,81:162:99:2185,0,1951 15 43739686 rs72067439 G GA 176.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0;QD=4.65;ReadPosRankSum=-1.3;SOR=1.091 GT:AD:DP:GQ:PL 0/1:24,14:48:99:214,0,471 15 43748304 rs690367 A G 1893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.022;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=0.88;SOR=0.594 GT:AD:DP:GQ:PL 0/1:67,63:130:99:1922,0,1893 15 43762196 rs689647 C T 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.279;SOR=0.7 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1693,0,1915 15 43767774 rs560191 G C 1695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.667;SOR=0.52 GT:AD:DP:GQ:PL 0/1:66,74:140:99:1724,0,1631 15 43784475 rs2439831 C T 897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.52;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=1.737;SOR=0.739 GT:AD:DP:GQ:PL 0/1:38,39:77:99:926,0,1065 15 43815486 rs201665184 C G 2387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-1.951;SOR=0.537 GT:AD:DP:GQ:PL 0/1:92,96:188:99:2416,0,2401 15 43816917 rs1060939 G A 2063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.509;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=3.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.517;SOR=0.885 GT:AD:DP:GQ:PL 0/1:98,87:185:99:2092,0,2266 15 43817406 rs480108 T C 2411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.491;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=9.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.19;ReadPosRankSum=-1.137;SOR=0.938 GT:AD:DP:GQ:PL 0/1:82,88:170:99:2440,0,2187 15 43820423 rs28438815 C T 3208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-1.119;SOR=0.512 GT:AD:DP:GQ:PL 0/1:146,135:281:99:3237,0,3641 15 43892847 rs12438025 G C 2993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.318;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.5;MQ=58.56;MQRankSum=-5.794;QD=11.56;ReadPosRankSum=-0.498;SOR=0.64 GT:AD:DP:GQ:PL 0/1:137,122:259:99:3022,0,3420 15 43892893 rs12437957 A G 1988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.638;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.04;MQRankSum=-6.317;QD=10.93;ReadPosRankSum=-0.016;SOR=0.69 GT:AD:DP:GQ:PL 0/1:104,78:182:99:2017,0,2702 15 43893072 rs3097773 G A 1622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.5;MQ=55.51;MQRankSum=0.546;QD=8.77;ReadPosRankSum=1.589;SOR=0.549 GT:AD:DP:GQ:PL 0/1:114,71:185:99:1651,0,3020 15 43897499 rs2920780 T C 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.397;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=49.17;MQRankSum=0.594;QD=12.2;ReadPosRankSum=-0.568;SOR=0.611 GT:AD:DP:GQ:PL 0/1:89,87:176:99:2175,0,2147 15 43925134 rs7169097 T A 736.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.532;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.5;MQ=36.87;MQRankSum=0.274;QD=24.56;ReadPosRankSum=0.199;SOR=1.519 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,19:30:99:0|1:43925134_T_A:765,0,1504 15 43925135 rs199882327 T G 736.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.697;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.5;MQ=36.87;MQRankSum=0.274;QD=24.56;ReadPosRankSum=0.066;SOR=1.519 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,19:30:99:0|1:43925134_T_A:765,0,1504 15 43925140 rs7167634 A G 694.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.528;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=1.9;MLEAC=1;MLEAF=0.5;MQ=35.81;MQRankSum=0;QD=23.96;ReadPosRankSum=0.412;SOR=1.426 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,18:29:99:0|1:43925134_T_A:723,0,1507 15 43925147 rs7169112 T G 691.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.758;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=3.948;MLEAC=1;MLEAF=0.5;MQ=36.22;MQRankSum=0.027;QD=23.85;ReadPosRankSum=0.252;SOR=1.675 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,17:29:99:0|1:43925134_T_A:720,0,1537 15 43939642 rs8042868 C T 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.504;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.944;SOR=0.6 GT:AD:DP:GQ:PL 0/1:61,69:130:99:1535,0,1564 15 44038899 rs2411284 C T 1917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=4.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-1.099;SOR=0.428 GT:AD:DP:GQ:PL 0/1:95,77:172:99:1946,0,2556 15 44053617 rs8040336 C T 702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.046;SOR=0.307 GT:AD:DP:GQ:PL 0/1:28,31:59:99:731,0,704 15 44057632 . C CT 46.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.127;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.26;ReadPosRankSum=-0.296;SOR=0.631 GT:AD:DP:GQ:PL 0/1:29,8:37:84:84,0,568 15 44061802 rs1053492 C T 1265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.682;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=1.592;QD=12.05;ReadPosRankSum=1.463;SOR=0.624 GT:AD:DP:GQ:PL 0/1:47,58:105:99:1294,0,1265 15 44069069 rs2277531 G C 2208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.255;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.006;SOR=0.809 GT:AD:DP:GQ:PL 0/1:124,85:209:99:2237,0,3300 15 44091351 rs656473 A T 3517.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.07;ReadPosRankSum=-0.044;SOR=0.632 GT:AD:DP:GQ:PL 1/1:1,116:117:99:3546,311,0 15 44093927 rs12702 T C 1092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.035;SOR=0.626 GT:AD:DP:GQ:PL 0/1:53,49:102:99:1121,0,1306 15 44102010 rs2228368 A C 2261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.95;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-2.617;SOR=0.703 GT:AD:DP:GQ:PL 0/1:123,111:234:99:2290,0,2863 15 44120559 rs678084 T G 4672.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.62;SOR=1.461 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4701,417,0 15 44128347 . TA T 978.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.071;QD=13.78;ReadPosRankSum=-0.129;SOR=0.786 GT:AD:DP:GQ:PL 0/1:37,34:71:99:1016,0,1231 15 44198049 rs2306674 A G 1366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=1.644;SOR=0.693 GT:AD:DP:GQ:PL 0/1:86,66:152:99:1395,0,2072 15 44943757 rs3759871 A G 4835.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4864,470,0 15 44966389 rs8026845 T C 4247.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4276,440,0 15 45028919 rs11388295 C CT 1829.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.458;QD=19.06;ReadPosRankSum=2.031;SOR=0.54 GT:AD:DP:GQ:PL 0/1:17,79:108:99:1867,0,133 15 45047134 rs2470911 G A 3321.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=1.567 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3350,330,0 15 45047573 rs3100139 C T 2787.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2816,272,0 15 45364534 rs930337 A C 135.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.4;QD=33.76;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:163,12,0 15 45364647 rs201420581 C T 423.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.26;QD=30.27;SOR=5.421 GT:AD:DP:GQ:PL 1/1:0,14:14:42:452,42,0 15 45391566 rs269869 A T 2797.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2826,281,0 15 45392075 rs269868 G A 5072.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=1.215 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5101,474,0 15 45400358 rs269860 C G 6942.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6971,699,0 15 45404066 rs2001616 G A 10714.8 PASS AC=2;AF=1;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,356:356:99:10743,1068,0 15 45408414 rs2576090 C G 5637.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.903;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.64;ReadPosRankSum=2.053;SOR=0.32 GT:AD:DP:GQ:PL 1/1:1,183:184:99:5666,542,0 15 45408699 rs2252371 C T 5182.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.92;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:45408691_C_G:5211,355,0 15 45408710 rs2554459 A G 3968.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.241 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3997,387,0 15 45408933 rs2576092 T C 5047.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.537 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5076,483,0 15 45409271 rs955152 C T 4734.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4763,471,0 15 45426373 rs145196561 G A 2544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.731;SOR=0.625 GT:AD:DP:GQ:PL 0/1:103,108:211:99:2573,0,2558 15 45428712 rs72724253 C T 2218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=-0.762;SOR=0.846 GT:AD:DP:GQ:PL 0/1:70,82:152:99:2247,0,1965 15 45444518 rs1706804 A G 5441.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5470,547,0 15 45445691 . AAT A 4576.73 PASS AC=2;AF=1;AN=2;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.79;SOR=0.914 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:45445691_AAT_A:4614,355,0 15 45446156 rs2458236 C T 1725.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1754,181,0 15 45467540 rs1632144 C G 6887.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6916,719,0 15 45545478 rs11854484 C T 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.187;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=0.475;SOR=0.788 GT:AD:DP:GQ:PL 0/1:50,42:92:99:1019,0,1185 15 45554267 rs1060896 C A 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=0.482;SOR=0.446 GT:AD:DP:GQ:PL 0/1:25,44:69:99:1050,0,583 15 45654327 rs1145086 A G 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.107;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-1.006;SOR=0.671 GT:AD:DP:GQ:PL 0/1:53,44:97:99:969,0,1251 15 45777344 rs1153829 T C 2273.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2302,222,0 15 45779810 rs2453531 G A 1166.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.13;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1195,129,0 15 45981317 rs10643 G A 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.965;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-1.655;SOR=0.7 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1689,0,1683 15 48058071 rs532598 G A 1695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.35;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-0.884;SOR=0.794 GT:AD:DP:GQ:PL 0/1:86,71:157:99:1724,0,2194 15 48063076 rs568215 T C 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=-0.666;SOR=0.571 GT:AD:DP:GQ:PL 0/1:78,112:190:99:2869,0,1919 15 48443699 rs2470103 T C 4003.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4032,413,0 15 48460927 rs8023906 C T 4378.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4407,441,0 15 48580713 rs1552311 T C 1428.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1457,153,0 15 48720526 rs363832 G C 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.305;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=2.281;SOR=0.572 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1555,0,1619 15 48779402 rs11853943 C T 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.7;SOR=0.784 GT:AD:DP:GQ:PL 0/1:78,94:172:99:2344,0,1829 15 48797307 rs25458 A G 2437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-0.889;SOR=0.566 GT:AD:DP:GQ:PL 0/1:83,111:194:99:2466,0,1805 15 48807637 rs4775765 C T 4977.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5006,536,0 15 49083577 rs58156069 C T 802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.464;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.16;SOR=0.653 GT:AD:DP:GQ:PL 0/1:40,35:75:99:831,0,864 15 49285001 rs34895054 G C 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=2.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=0.318;SOR=0.561 GT:AD:DP:GQ:PL 0/1:103,91:194:99:1975,0,2383 15 49325289 rs11638215 A C 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.835;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.589;SOR=0.66 GT:AD:DP:GQ:PL 0/1:87,83:170:99:1975,0,1997 15 49429410 rs17473148 A G 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.617;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.278;SOR=0.656 GT:AD:DP:GQ:PL 0/1:44,38:82:99:952,0,1035 15 49620200 rs1055254 C T 1846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=6.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.293;SOR=0.568 GT:AD:DP:GQ:PL 0/1:80,82:162:99:1875,0,1925 15 49800394 rs58845336 G A 1489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.641;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.32;ReadPosRankSum=1.277;SOR=0.397 GT:AD:DP:GQ:PL 0/1:23,63:86:99:1518,0,602 15 49867323 rs12902107 G A 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.02;ReadPosRankSum=-0.86;SOR=1.27 GT:AD:DP:GQ:PL 0/1:15,26:41:99:644,0,391 15 50152583 rs4774549 G T 6136.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6165,615,0 15 50226313 rs2452524 G T 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.564;SOR=0.727 GT:AD:DP:GQ:PL 0/1:73,94:167:99:2314,0,1745 15 50474766 rs1648348 A C 2234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.006;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-2.08;SOR=0.799 GT:AD:DP:GQ:PL 0/1:108,79:187:99:2263,0,2981 15 50489677 rs1863511 A T 1633.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1662,162,0 15 50570999 rs11372405 G GT 822.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.767;QD=10.03;ReadPosRankSum=0.783;SOR=0.603 GT:AD:DP:GQ:PL 0/1:42,40:84:99:860,0,784 15 50773755 rs3131561 G A 5171.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5200,512,0 15 50867082 rs473357 G A 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.843;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=5.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=1.098;SOR=0.869 GT:AD:DP:GQ:PL 0/1:33,45:78:99:1150,0,928 15 50878574 rs3109894 G A 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.444;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-0.769;SOR=1.194 GT:AD:DP:GQ:PL 0/1:24,34:58:99:824,0,481 15 50901929 rs35281039 TA T 567.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.89;ReadPosRankSum=-0.35;SOR=0.638 GT:AD:DP:GQ:PL 0/1:40,32:80:99:605,0,830 15 51017527 rs72110833 AAAAAC A 703.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.822;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.027;QD=19.02;ReadPosRankSum=-0.548;SOR=0.765 GT:AD:DP:GQ:PL 0/1:18,19:37:99:741,0,750 15 51204364 rs1147129 G A 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.753;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.166;QD=9.44;ReadPosRankSum=1.222;SOR=0.727 GT:AD:DP:GQ:PL 0/1:51,39:90:99:878,0,1165 15 51217361 rs2306331 T C 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.244;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.037;SOR=0.791 GT:AD:DP:GQ:PL 0/1:78,82:160:99:1862,0,1695 15 51294832 rs3825798 G A 2045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.246;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.535;SOR=0.585 GT:AD:DP:GQ:PL 0/1:76,87:163:99:2074,0,2036 15 51350655 rs76241791 AT A 2031.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.09;ReadPosRankSum=-0.416;SOR=0.423 GT:AD:DP:GQ:PL 1/1:1,74:75:99:2069,199,0 15 51386892 rs201887319 CCGGGCGGCG C 1917.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.77;ReadPosRankSum=1.51;SOR=0.896 GT:AD:DP:GQ:PL 0/1:47,50:97:99:1955,0,2461 15 51502986 rs10046 G A 534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.167;SOR=0.793 GT:AD:DP:GQ:PL 0/1:25,24:49:99:563,0,605 15 51510868 rs4324076 A C 165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.386;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.14;ReadPosRankSum=-0.382;SOR=0.349 GT:AD:DP:GQ:PL 0/1:18,9:27:99:194,0,453 15 51529112 rs700518 T C 679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.305;SOR=0.997 GT:AD:DP:GQ:PL 0/1:33,29:62:99:708,0,761 15 51634255 rs2446421 T G 5098.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.77;SOR=1.264 GT:AD:DP:GQ:PL 1/1:0,151:151:99:5127,453,0 15 51675625 rs2445738 C T 1723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.924;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=-0.113;SOR=0.722 GT:AD:DP:GQ:PL 0/1:60,68:128:99:1752,0,1295 15 51770456 rs11291027 AT A 862.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=1.854;SOR=0.42 GT:AD:DP:GQ:PL 0/1:28,42:70:99:900,0,592 15 51829812 rs17524906 G A 1093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.44;ReadPosRankSum=0.813;SOR=0.665 GT:AD:DP:GQ:PL 0/1:92,55:147:99:1122,0,2279 15 51868380 rs59569487 TA T 170.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.38;ReadPosRankSum=-0.895;SOR=0.786 GT:AD:DP:GQ:PL 0/1:25,14:51:99:208,0,411 15 52263953 rs72732960 G A 925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=1.116;SOR=0.484 GT:AD:DP:GQ:PL 0/1:30,42:72:99:954,0,785 15 52517737 rs11070887 A C 1037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.664;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.543;SOR=0.979 GT:AD:DP:GQ:PL 0/1:34,45:79:99:1066,0,730 15 52521529 rs3838857 AAAT A 1731.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.38;ReadPosRankSum=0.409;SOR=0.744 GT:AD:DP:GQ:PL 0/1:36,45:81:99:1769,0,1513 15 52531941 rs11635028 A G 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.034;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.463;SOR=0.527 GT:AD:DP:GQ:PL 0/1:97,87:184:99:2177,0,2267 15 52534344 rs3751631 G A 1812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=-0.64;SOR=0.692 GT:AD:DP:GQ:PL 0/1:110,90:200:99:1841,0,2637 15 52539673 rs10163109 C T 3990.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4019,392,0 15 52543615 rs72734946 G T 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=0.813;SOR=0.659 GT:AD:DP:GQ:PL 0/1:79,57:136:99:1242,0,2116 15 52556429 rs4776032 A G 3699.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3728,380,0 15 52609241 rs72734962 C T 1006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.32;ReadPosRankSum=-0.667;SOR=0.587 GT:AD:DP:GQ:PL 0/1:75,46:121:99:1035,0,1970 15 52611451 rs2290332 A G 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.429;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.118;SOR=0.848 GT:AD:DP:GQ:PL 0/1:107,104:211:99:2464,0,2523 15 52643564 rs1058219 G A 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.299;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.644;SOR=0.896 GT:AD:DP:GQ:PL 0/1:80,95:175:99:2206,0,1779 15 52667552 rs2414145 G A 5192.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5221,512,0 15 52681573 rs1724623 A G 2994.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=31.52;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3023,284,0 15 52689526 rs2924130 T C 5389.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5418,548,0 15 52689631 rs1724577 T G 2744.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2773,264,0 15 52708502 rs61363656 T C 1847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.233;SOR=0.793 GT:AD:DP:GQ:PL 0/1:75,77:152:99:1876,0,1742 15 52901433 rs12915981 C T 3306.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.07;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3335,300,0 15 52901638 rs3751614 T C 5466.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.33;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5495,492,0 15 52901977 rs2414166 G A 5513.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5542,537,0 15 53809958 rs17630660 A C 952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.176;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.786;SOR=0.408 GT:AD:DP:GQ:PL 0/1:51,42:93:99:981,0,1134 15 53815527 rs59668705 AAG A 232.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.53;ReadPosRankSum=-0.019;SOR=0.445 GT:AD:DP:GQ:PL 0/1:77,15:95:99:270,0,2416 15 53907948 rs17730281 G A 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-0.589;SOR=0.696 GT:AD:DP:GQ:PL 0/1:84,86:170:99:2094,0,2085 15 53994493 rs6416452 A G 1692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.975;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=0.017;SOR=0.992 GT:AD:DP:GQ:PL 0/1:61,71:132:99:1721,0,1365 15 54003091 rs551225 G A 3015.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.67;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3044,326,0 15 54008795 rs690337 T C 2522.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=28.03;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2551,269,0 15 54008845 rs690346 T C 2472.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=28.42;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2501,261,0 15 54008889 rs34828731 GA G 1790.73 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=36.55;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1828,147,0 15 54306925 rs12437941 G A 5210.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5239,517,0 15 54624313 rs11856987 T A 1964.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1993,192,0 15 54838908 . T TA 481.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.134;ClippingRankSum=0;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.93;MQRankSum=2.776;QD=8.31;ReadPosRankSum=1.509;SOR=0.667 GT:AD:DP:GQ:PGT:PID:PL 0/1:34,24:58:99:1|0:54838907_A_AT:519,0,996 15 54841874 rs9302181 A G 1883.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1912,186,0 15 54847677 rs11639005 C T 3460.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3489,369,0 15 54915975 rs2414332 A T 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.618;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=1.78;SOR=1.254 GT:AD:DP:GQ:PL 0/1:35,34:69:99:865,0,791 15 54919047 rs1520411 A G 1552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.902;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.699;SOR=0.492 GT:AD:DP:GQ:PL 0/1:63,64:127:99:1581,0,1491 15 55632859 rs678892 G T 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.384;SOR=0.811 GT:AD:DP:GQ:PL 0/1:50,51:101:99:1195,0,1211 15 55653031 rs501231 A G 3183.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3212,300,0 15 55663993 rs74438085 T C 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=-0.232;SOR=0.85 GT:AD:DP:GQ:PL 0/1:60,38:98:99:881,0,1577 15 55669136 rs2289324 T G 695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.018;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-3.792;SOR=0.643 GT:AD:DP:GQ:PL 0/1:30,29:59:99:724,0,732 15 55681641 rs74970525 C T 374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=1.553;SOR=0.33 GT:AD:DP:GQ:PL 0/1:23,17:40:99:403,0,620 15 55722872 rs77641439 G C 1111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=-0.424;SOR=0.766 GT:AD:DP:GQ:PL 0/1:74,55:129:99:1140,0,1812 15 55912875 rs1438914 T A 328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=2.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=1.858;SOR=0.362 GT:AD:DP:GQ:PL 0/1:22,19:41:99:357,0,520 15 55921013 rs7165971 T C 1267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.588;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=1.114;SOR=0.677 GT:AD:DP:GQ:PL 0/1:45,50:95:99:1296,0,1035 15 55965666 rs75403514 A G 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.594;SOR=0.541 GT:AD:DP:GQ:PL 0/1:87,77:164:99:1719,0,2076 15 56032872 rs77118243 G A 1227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.841;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=1.015;SOR=0.426 GT:AD:DP:GQ:PL 0/1:54,60:114:99:1256,0,1523 15 56130286 rs11071227 A T 1099.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.49;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1128,120,0 15 56139153 rs2288346 T C 1841.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1870,192,0 15 56140995 rs12232351 T A 2575.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2604,270,0 15 56152598 rs4774228 A G 3391.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=1.309 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3420,348,0 15 56152729 rs2303579 T C 4755.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4784,465,0 15 56152872 rs2303580 C T 4240.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4269,428,0 15 56243792 rs10718511 TA T 843.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.363;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.568;QD=14.3;ReadPosRankSum=-1.125;SOR=0.998 GT:AD:DP:GQ:PL 0/1:16,43:72:99:881,0,167 15 56386577 rs7170589 T G 4736.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.59;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4765,422,0 15 56387142 rs34361729 G A 3214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.044;SOR=0.737 GT:AD:DP:GQ:PL 0/1:134,135:269:99:3243,0,3434 15 56387931 rs11071247 C T 3910.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3939,381,0 15 56388033 rs12439907 T C 1918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.579;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=-0.112;SOR=1.179 GT:AD:DP:GQ:PL 0/1:70,73:143:99:1947,0,1677 15 56719797 rs795785 G T 2090.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.644 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2119,204,0 15 56721406 rs808730 C T 1957.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.57;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1986,213,0 15 56735824 rs17819473 T C 1395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=-0.123;SOR=0.804 GT:AD:DP:GQ:PL 0/1:44,55:99:99:1424,0,1143 15 56739063 rs17238740 C T 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.323;SOR=1.004 GT:AD:DP:GQ:PL 0/1:36,40:76:99:929,0,887 15 56923714 rs8043381 G A 4240.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4269,432,0 15 56959028 rs28620278 C T 4007.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4036,398,0 15 57490034 rs17819994 A G 1359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.571;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.75;SOR=0.914 GT:AD:DP:GQ:PL 0/1:70,58:128:99:1388,0,1590 15 57524982 rs12442879 G A 2342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.767;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-0.563;SOR=0.752 GT:AD:DP:GQ:PL 0/1:82,98:180:99:2371,0,1755 15 57731335 rs1280395 A C 5048.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5077,502,0 15 57731573 rs7182648 C T 2827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.532;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.473;SOR=0.495 GT:AD:DP:GQ:PL 0/1:124,128:252:99:2856,0,3024 15 57731728 rs1280396 A G 5199.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5228,545,0 15 57838258 rs2635390 T C 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.355;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.284;SOR=0.68 GT:AD:DP:GQ:PL 0/1:81,78:159:99:1802,0,1895 15 57884219 rs2453089 A G 2022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-2.194;SOR=0.588 GT:AD:DP:GQ:PL 0/1:118,87:205:99:2051,0,2904 15 57918069 rs2069133 A G 1524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-1.382;SOR=0.73 GT:AD:DP:GQ:PL 0/1:75,68:143:99:1553,0,1671 15 57918090 rs2958059 A G 3694.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3723,384,0 15 57967219 rs1991252 T C 4578.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4607,470,0 15 57967285 rs5812908 AT A 2366.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.872;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.67;ReadPosRankSum=-0.711;SOR=0.872 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2404,271,0 15 57976583 rs2554032 A C 1991.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.41 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2020,201,0 15 58000981 rs1062707 C T 4554.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=30.57;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4583,447,0 15 58253062 rs3784263 C T 1196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.501;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.271;SOR=0.558 GT:AD:DP:GQ:PL 0/1:45,50:95:99:1225,0,1057 15 58256127 rs4646626 C T 2300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-0.65;SOR=0.541 GT:AD:DP:GQ:PL 0/1:115,103:218:99:2329,0,2828 15 58430763 rs34945403 A G 1960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.45;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.62;ReadPosRankSum=-0.63;SOR=0.567 GT:AD:DP:GQ:PL 0/1:42,76:118:99:1989,0,927 15 58471368 rs2249783 C T 4660.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.74;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4689,501,0 15 58471556 rs2271678 T C 1293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.713;SOR=0.753 GT:AD:DP:GQ:PL 0/1:65,56:123:99:1322,0,1623 15 58476281 rs1867380 A G 4522.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4551,438,0 15 58834741 rs690 G T 911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-1.588;SOR=0.746 GT:AD:DP:GQ:PL 0/1:32,40:72:99:940,0,777 15 58838038 rs6084 C G 1974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.095;SOR=0.957 GT:AD:DP:GQ:PL 0/1:88,90:178:99:2003,0,2020 15 58853079 rs3829462 C A 1219.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.11;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1248,135,0 15 58853109 rs3829461 A G 1721.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=1.217 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1750,177,0 15 58857378 rs17269397 A G 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=0.273;SOR=0.509 GT:AD:DP:GQ:PL 0/1:39,48:87:99:1190,0,958 15 59094494 . CT C 60.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DP=40;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.9;ReadPosRankSum=-0.276;SOR=1.164 GT:AD:DP:GQ:PL 0/1:24,8:40:98:98,0,561 15 59347929 rs1446239 C A 3987.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=1.095 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4016,399,0 15 59368167 rs7178935 G A 3733.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.708 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3762,369,0 15 59381847 rs7177112 A G 1826.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1855,177,0 15 59399501 rs11293095 CT C 712.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.246;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.584;QD=13.45;ReadPosRankSum=-0.234;SOR=0.482 GT:AD:DP:GQ:PL 0/1:15,38:65:99:750,0,207 15 59453384 rs2306791 T C 5836.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5865,594,0 15 59499228 rs3809529 C T 6766.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6795,669,0 15 59499274 rs3809528 C A 7065.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7094,739,0 15 59548475 rs4508371 C T 2267.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.32;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2296,249,0 15 59784493 rs4296198 C T 1142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.873;SOR=0.966 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1171,0,1311 15 59981491 rs2306359 T G 4853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.364;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=1.22;SOR=0.549 GT:AD:DP:GQ:PL 0/1:158,170:328:99:4882,0,5546 15 59981515 rs3087328 A G 3617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.377;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.382;SOR=0.708 GT:AD:DP:GQ:PL 0/1:164,136:300:99:3646,0,6107 15 59981590 rs754641 G A 3498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.812;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=6.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.357;SOR=0.627 GT:AD:DP:GQ:PL 0/1:139,139:278:99:3527,0,3822 15 60648214 rs12898604 T C 2631.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2660,267,0 15 60678298 rs11855679 T A 1561.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1590,156,0 15 60690089 rs12904657 A G 2387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.314;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=1.493;SOR=0.831 GT:AD:DP:GQ:PL 0/1:105,105:210:99:2416,0,2349 15 60724118 rs12437617 C G 458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.34;ReadPosRankSum=-0.69;SOR=0.656 GT:AD:DP:GQ:PL 0/1:13,19:32:99:487,0,318 15 60734697 rs1063100 A G 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.971;SOR=0.56 GT:AD:DP:GQ:PL 0/1:49,45:94:99:984,0,1180 15 60789798 rs11071539 G T 2284.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2313,237,0 15 62201333 rs35201581 GA G 870.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.849;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=7.437;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.299;QD=10.01;ReadPosRankSum=1.115;SOR=1.463 GT:AD:DP:GQ:PL 0/1:39,48:87:99:908,0,779 15 62202482 rs10851704 C T 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=-0.132;SOR=0.898 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1519,0,1631 15 62223273 rs9788670 C T 943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=4.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.74;ReadPosRankSum=1.056;SOR=0.379 GT:AD:DP:GQ:PL 0/1:76,46:122:99:972,0,2119 15 62259637 rs3784634 C T 875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.01;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.611;SOR=0.626 GT:AD:DP:GQ:PL 0/1:48,42:90:99:904,0,1064 15 62360320 . G A 2429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.39;ClippingRankSum=0;DP=171;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=0.626;SOR=0.475 GT:AD:DP:GQ:PL 0/1:74,97:171:99:2458,0,1905 15 62456358 rs8040712 A C 12664.8 PASS AC=2;AF=1;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,420:420:99:12693,1258,0 15 62990971 rs12905981 C T 1425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.463;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.138;SOR=1.041 GT:AD:DP:GQ:PL 0/1:77,59:136:99:1454,0,1887 15 63009804 rs1320191 C T 4048.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4077,429,0 15 63014548 rs10775181 A G 5462.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=1.501 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5491,510,0 15 63030398 rs12900862 T C 5220.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5249,548,0 15 63047793 rs4775538 C T 5980.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6009,588,0 15 63414083 rs34317102 A C 2571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.353;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.793;SOR=0.574 GT:AD:DP:GQ:PL 0/1:113,105:218:99:2600,0,2737 15 63447932 rs368882344 TA T 207.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.308;QD=3.05;ReadPosRankSum=0.393;SOR=0.545 GT:AD:DP:GQ:PL 0/1:51,17:82:99:245,0,1163 15 63551808 rs36038234 T C 830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.381;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-2.032;SOR=0.815 GT:AD:DP:GQ:PL 0/1:36,36:72:99:859,0,856 15 63569902 rs117618017 C T 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=-1.64;SOR=0.562 GT:AD:DP:GQ:PL 0/1:90,65:155:99:1566,0,2465 15 63892911 rs12899671 G A 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.193;SOR=0.572 GT:AD:DP:GQ:PL 0/1:119,106:225:99:2505,0,3051 15 63922752 rs10851731 T A 1674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-0.163;SOR=0.739 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1703,0,1753 15 63932513 rs2228517 G C 1550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.338;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.177;SOR=0.716 GT:AD:DP:GQ:PL 0/1:86,62:148:99:1579,0,2273 15 63935149 rs10519223 A G 562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=-0.76;SOR=0.676 GT:AD:DP:GQ:PL 0/1:36,29:65:99:591,0,809 15 63937209 rs2229749 C G 1370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.616;SOR=0.42 GT:AD:DP:GQ:PL 0/1:49,61:110:99:1399,0,1218 15 63953153 rs2272209 A G 559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.584;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-2.143;SOR=0.77 GT:AD:DP:GQ:PL 0/1:32,24:56:99:588,0,901 15 63954029 rs2228511 C T 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.263;SOR=0.708 GT:AD:DP:GQ:PL 0/1:97,103:200:99:2574,0,2383 15 63970456 rs2228510 T C 1607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.819;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-0.088;SOR=0.847 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1636,0,1632 15 63984772 rs11630720 T C 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.689;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.952;SOR=1.08 GT:AD:DP:GQ:PL 0/1:45,47:92:99:1196,0,1069 15 63988357 rs2255243 C G 1433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-2.288;SOR=0.813 GT:AD:DP:GQ:PL 0/1:51,62:113:99:1462,0,1315 15 64215375 rs4776669 G C 7825.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,257:259:99:7854,771,0 15 64385851 rs332259 T C 4054.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.97;SOR=1.374 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4083,369,0 15 64418397 rs1130603 G A 4682.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4711,485,0 15 64710827 rs4776494 T C 2626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.825;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-0.879;SOR=0.627 GT:AD:DP:GQ:PL 0/1:87,110:197:99:2655,0,1746 15 64717845 rs11453373 C CT 37.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.673;QD=0.45;ReadPosRankSum=-0.035;SOR=0.746 GT:AD:DP:GQ:PL 0/1:68,15:93:75:75,0,1481 15 64737225 rs7167612 G A 1636.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1665,168,0 15 64915106 rs525878 C T 5798.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5827,590,0 15 64962630 rs11633399 A C 867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.578;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=-0.822;SOR=0.693 GT:AD:DP:GQ:PL 0/1:61,40:101:99:896,0,1471 15 65041622 rs6494493 C A 3105.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3134,323,0 15 65108504 rs17802279 A T 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.5;ReadPosRankSum=0.482;SOR=0.682 GT:AD:DP:GQ:PL 0/1:113,78:191:99:1652,0,2695 15 65113493 rs1872592 G A 2215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.305;SOR=0.672 GT:AD:DP:GQ:PL 0/1:93,94:187:99:2244,0,2271 15 65116328 rs12899195 A G 5974.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.38;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,179:179:99:6003,537,0 15 65116425 rs77981470 G A 2745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.187;SOR=0.798 GT:AD:DP:GQ:PL 0/1:154,123:277:99:2774,0,3638 15 65209718 rs34503100 G GTGTC 5033.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=6.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.71;ReadPosRankSum=1.423;SOR=0.933 GT:AD:DP:GQ:PL 0/1:114,129:245:99:5071,0,4620 15 65235776 rs34988193 A G 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.571;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.131;QD=10.09;ReadPosRankSum=1.659;SOR=0.674 GT:AD:DP:GQ:PL 0/1:76,61:137:99:1411,0,1633 15 65236875 rs2414865 T C 4114.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.99;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4143,440,0 15 65312614 rs60772880 C CA 32.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.953;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.72;QD=0.39;ReadPosRankSum=-1.322;SOR=0.812 GT:AD:DP:GQ:PL 0/1:69,14:93:70:70,0,1411 15 65350968 rs2232758 T A 4164.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.627 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4193,402,0 15 65369951 rs2919359 A G 8746.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.3;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8775,766,0 15 65370353 rs2919360 T C 8229.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,259:259:99:8258,777,0 15 65449169 rs2946670 C T 1931.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1960,201,0 15 65451057 rs117517219 C T 933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.199;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=-1.618;SOR=0.757 GT:AD:DP:GQ:PL 0/1:55,41:96:99:962,0,1302 15 65489128 rs938952 C T 6363.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6392,651,0 15 65489688 rs2679117 T C 7442.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7471,726,0 15 65490901 rs2679118 T C 7270.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7299,698,0 15 65621441 rs12907128 C A 5919.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.909;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=3.39;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.16;ReadPosRankSum=1.014;SOR=0.516 GT:AD:DP:GQ:PL 1/1:1,202:203:99:5948,596,0 15 65621857 rs509652 T C 6140.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6169,599,0 15 65667724 rs666623 A G 4617.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=1.53 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4646,438,0 15 65676617 rs2292933 T C 7696.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.83;ReadPosRankSum=1.295;SOR=0.267 GT:AD:DP:GQ:PL 1/1:1,257:258:99:7725,735,0 15 65684533 rs2277582 A G 5564.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5593,543,0 15 65685695 rs2277583 G A 5393.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5422,555,0 15 65689267 rs12442757 T C 7385.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7414,761,0 15 65877174 rs75178492 C T 4080.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.39;SOR=1.012 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4109,443,0 15 65994733 rs17810074 C T 3687.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3716,375,0 15 66257236 rs36088570 C CA 5254.73 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=37.01;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,142:142:99:5292,430,0 15 66257408 rs333550 T C 6466.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6495,651,0 15 66274690 rs551474 T C 9847.77 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9876,957,0 15 66411441 rs16949528 C T 2289.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.94;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2318,254,0 15 66612965 rs17851970 T C 2172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.416;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-2.757;SOR=0.804 GT:AD:DP:GQ:PL 0/1:103,98:201:99:2201,0,2305 15 66625161 rs11071885 A G 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.854;SOR=0.753 GT:AD:DP:GQ:PL 0/1:67,67:134:99:1449,0,1608 15 66644521 rs9806123 C G 2875.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2904,305,0 15 66644563 rs9806130 G A 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=3.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.452;SOR=1.103 GT:AD:DP:GQ:PL 0/1:39,43:82:99:1011,0,851 15 66782048 rs41306345 C T 529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=2.1;SOR=0.58 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,22:48:99:0|1:66782048_C_T:558,0,643 15 66806308 rs4238406 C T 1977.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.41 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2006,201,0 15 66821174 rs6494580 G C 2893.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2922,278,0 15 66821250 rs11071896 A G 1602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.526;SOR=0.662 GT:AD:DP:GQ:PL 0/1:71,74:145:99:1631,0,1595 15 66832466 rs75532475 A G 1258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=4.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.563;SOR=0.463 GT:AD:DP:GQ:PL 0/1:53,55:108:99:1287,0,1141 15 66995716 rs149612008 C T 2077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-2.092;SOR=0.809 GT:AD:DP:GQ:PL 0/1:128,93:221:99:2106,0,3387 15 67457335 rs1065080 A G 7630.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7659,768,0 15 67528374 rs7173826 T G 2527.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2556,264,0 15 67547301 rs3743347 C A 3205.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3234,338,0 15 67692502 rs7495023 T C 4354.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4383,438,0 15 67768151 rs3985641 G C 4147.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.15;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4176,387,0 15 68116400 rs28675295 C A 4660.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.999 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4689,484,0 15 68117300 rs7170185 T A 6382.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6411,639,0 15 68122509 rs28587941 T C 3163.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3192,323,0 15 68445912 rs11633620 T A 786.77 PASS AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,26:26:78:815,78,0 15 68492028 rs11071986 G A 4454.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4483,444,0 15 68583175 rs6494729 T C 3840.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3869,387,0 15 68603625 rs898591 C T 3055.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3084,328,0 15 68624396 rs7168069 A C 1839.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.571 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1868,180,0 15 68628143 rs2306023 C T 2681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=1.289;SOR=0.693 GT:AD:DP:GQ:PL 0/1:111,117:228:99:2710,0,2540 15 69003871 rs3736272 G T 1239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=1.114;SOR=0.964 GT:AD:DP:GQ:PL 0/1:51,48:99:99:1268,0,1364 15 69007656 rs1542746 T G 3673.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3702,392,0 15 69011119 rs33913544 C T 1655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.926;SOR=0.782 GT:AD:DP:GQ:PL 0/1:91,76:167:99:1684,0,2213 15 69238445 rs3743093 G A 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.519;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.848;SOR=0.889 GT:AD:DP:GQ:PL 0/1:111,93:204:99:2469,0,2680 15 69325581 rs311893 C T 6112.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6141,621,0 15 69327825 rs311889 C T 4566.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4595,438,0 15 69328226 rs12907196 C T 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=1.228;SOR=0.887 GT:AD:DP:GQ:PL 0/1:78,86:164:99:2235,0,2080 15 69561518 rs3865014 G A 3193.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3222,317,0 15 69715488 rs7180624 C T 1165.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.28;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=21.59;ReadPosRankSum=-0.282;SOR=0.562 GT:AD:DP:GQ:PL 1/1:4,50:54:44:1194,44,0 15 69728949 rs3825858 A G 2652.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2681,273,0 15 69732736 rs937724 C T 3343.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3372,348,0 15 70345626 rs1057865 C T 2798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.765;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.39;SOR=0.771 GT:AD:DP:GQ:PL 0/1:177,127:304:99:2827,0,4146 15 70346923 rs2228178 C T 3767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.211;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=1.507;SOR=0.875 GT:AD:DP:GQ:PL 0/1:130,156:286:99:3796,0,3017 15 70351788 rs2133977 T C 4583.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4612,461,0 15 70352968 rs2228176 C G 2659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.025;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.442;SOR=0.882 GT:AD:DP:GQ:PL 0/1:108,112:220:99:2688,0,2586 15 70960068 rs934005 G A 2028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.865;SOR=0.501 GT:AD:DP:GQ:PL 0/1:105,87:192:99:2057,0,2642 15 70991925 rs4776525 G C 1814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.228;SOR=0.505 GT:AD:DP:GQ:PL 0/1:67,74:141:99:1843,0,1615 15 71125093 rs3825970 G A 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.1;ReadPosRankSum=-0.667;SOR=0.749 GT:AD:DP:GQ:PL 0/1:138,84:222:99:1827,0,3567 15 71125204 rs1549317 A G 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=1.608;SOR=0.452 GT:AD:DP:GQ:PL 0/1:112,93:205:99:2209,0,2848 15 71184278 rs2959174 G T 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.116;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=2.068;SOR=0.762 GT:AD:DP:GQ:PL 0/1:133,70:203:99:1671,0,3549 15 71184495 rs2955035 A G 2657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.016;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.729;SOR=0.802 GT:AD:DP:GQ:PL 0/1:107,100:207:99:2686,0,2554 15 71276480 rs3834543 GCAA G 1857.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.725;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.04;ReadPosRankSum=0.492;SOR=1.031 GT:AD:DP:GQ:PL 0/1:54,49:103:99:1895,0,2436 15 71953045 rs62024298 G A 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.253;SOR=0.58 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2218,0,2574 15 72105928 rs11351249 AC A 6914.73 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=32.46;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6952,641,0 15 72191073 rs2415128 T C 5831.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5860,577,0 15 72191266 rs2415129 C T 4575.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4604,473,0 15 72432583 rs930871 A G 3316.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3345,324,0 15 72454729 rs897731 C G 1925.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1954,198,0 15 72637795 rs4777502 T C 5263.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5292,510,0 15 72638892 rs1800431 T C 3882.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3911,407,0 15 72955038 . G T 935.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.464;ClippingRankSum=0;DP=98;ExcessHet=3.0103;FS=27.245;MLEAC=1;MLEAF=0.5;MQ=24.69;MQRankSum=2.866;QD=9.55;ReadPosRankSum=0.522;SOR=4.804 GT:AD:DP:GQ:PL 0/1:54,44:98:99:964,0,1781 15 72955043 rs200978698 C T 1047.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.008;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=12.229;MLEAC=1;MLEAF=0.5;MQ=24.38;MQRankSum=-7.765;QD=9.11;ReadPosRankSum=-0.796;SOR=3.137 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,31:115:99:0|1:72955043_C_T:1076,0,3686 15 72955044 rs201567817 C T 1073.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.893;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=12.196;MLEAC=1;MLEAF=0.5;MQ=24.37;MQRankSum=-7.757;QD=9.02;ReadPosRankSum=-0.64;SOR=3.121 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,32:119:99:0|1:72955043_C_T:1102,0,3683 15 72955060 rs200016190 G A 1413.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.85;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.61;MQRankSum=-5.206;QD=9.3;ReadPosRankSum=-0.54;SOR=0.688 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,48:152:99:0|1:72955043_C_T:1442,0,3986 15 72955110 rs200018593 C T 2052.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=4.131;MLEAC=1;MLEAF=0.5;MQ=29.4;MQRankSum=1.756;QD=7.55;ReadPosRankSum=-1.368;SOR=0.481 GT:AD:DP:GQ:PL 0/1:161,111:272:99:2081,0,3465 15 72987588 rs4777527 G T 1946.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.31;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1975,221,0 15 73002035 rs8033604 G A 1862.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1891,195,0 15 73023937 rs12914333 T C 5804.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5833,578,0 15 73027478 rs2277598 T C 2653.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2682,255,0 15 73067234 rs11634630 T C 4855.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.13 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4884,485,0 15 73409213 rs3840037 A AT,ATT 1257.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.121;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=15.92;ReadPosRankSum=-0.196;SOR=0.963 GT:AD:DP:GQ:PL 1/2:16,41,22:83:99:1295,236,376,511,0,909 15 73418741 . AT A 54.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DP=83;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.85;QD=0.7;ReadPosRankSum=0.61;SOR=0.407 GT:AD:DP:GQ:PL 0/1:63,15:82:92:92,0,1432 15 73541513 rs3736510 A G 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.183;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.699;SOR=1.054 GT:AD:DP:GQ:PL 0/1:73,65:138:99:1521,0,1659 15 73545732 rs2623989 T C 655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.172;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.76;MQRankSum=-1.932;QD=11.5;ReadPosRankSum=0.416;SOR=0.639 GT:AD:DP:GQ:PL 0/1:30,27:57:99:684,0,712 15 73564881 rs1131854 C T 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=1.391;SOR=0.438 GT:AD:DP:GQ:PL 0/1:57,75:132:99:1740,0,1267 15 73614834 rs529004 T C 1737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.334;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.545;SOR=0.786 GT:AD:DP:GQ:PL 0/1:86,75:161:99:1766,0,2126 15 74032783 rs28594180 A G 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.312;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.356;SOR=0.669 GT:AD:DP:GQ:PL 0/1:95,81:176:99:2113,0,2460 15 74174064 rs117341216 G A 1266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.881;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=0.458;SOR=0.624 GT:AD:DP:GQ:PL 0/1:55,55:110:99:1295,0,1277 15 74177250 rs35697698 C T 966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.5;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-1.271;SOR=0.969 GT:AD:DP:GQ:PL 0/1:58,39:97:99:995,0,1380 15 74178966 rs62007098 G A 1641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.316;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.465;SOR=0.967 GT:AD:DP:GQ:PL 0/1:63,70:133:99:1670,0,1417 15 74336633 rs5742915 T C 4920.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:4949,524,0 15 74364539 rs202021050 G A 48.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.212;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.95;MQRankSum=0.092;QD=0.46;ReadPosRankSum=-1.946;SOR=0.061 GT:AD:DP:GQ:PL 0/1:96,11:107:77:77,0,3225 15 74367358 rs199772641 G C 3719.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.83;QD=29.06;SOR=1.628 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3748,384,0 15 74467856 rs1052622 G A 8553.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8582,834,0 15 74536400 rs10552820 TAAG T 8568.73 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=43.72;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,196:196:99:8606,590,0 15 74565181 rs79172627 G A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.033;SOR=0.711 GT:AD:DP:GQ:PL 0/1:83,89:172:99:2038,0,1914 15 74622533 rs2277603 A G 1373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.752;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=11.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-1.154;SOR=1.626 GT:AD:DP:GQ:PL 0/1:73,53:126:99:1402,0,1838 15 74622678 rs1564782 G A 5409.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5438,569,0 15 74623302 rs2277606 T C 4073.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.353 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4102,389,0 15 74703929 rs741761 T C 2832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.941;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.173;SOR=0.634 GT:AD:DP:GQ:PL 0/1:109,114:223:99:2861,0,2502 15 74709975 rs2075589 G A 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.572;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.04;ReadPosRankSum=-0.434;SOR=0.683 GT:AD:DP:GQ:PL 0/1:92,65:157:99:1447,0,2088 15 74710593 rs28362912 C T 3164.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3193,329,0 15 75047426 rs2470890 C T 5742.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5771,599,0 15 75093422 rs33991421 C T 2161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.733;SOR=0.63 GT:AD:DP:GQ:PL 0/1:83,93:176:99:2190,0,1884 15 75115895 rs7162232 G A 4017.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4046,410,0 15 75129594 rs2290573 G A 6977.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7006,697,0 15 75130093 rs12898397 T C 4444.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=28.31;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4473,470,0 15 75131661 rs4886615 A G 5156.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5185,513,0 15 75131959 rs936227 A G 9206.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,280:280:99:9235,833,0 15 75135447 rs2290574 T C 3154.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3183,303,0 15 75183935 rs11638130 G A 1468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.617;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.26;SOR=1.092 GT:AD:DP:GQ:PL 0/1:84,59:143:99:1497,0,2207 15 75185670 rs7495739 A G 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.298;SOR=0.847 GT:AD:DP:GQ:PL 0/1:57,49:106:99:1244,0,1596 15 75189930 rs1130741 A G 2097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.47;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-3.375;SOR=0.807 GT:AD:DP:GQ:PL 0/1:100,84:184:99:2126,0,2307 15 75336729 rs2304899 A G 7048.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7077,702,0 15 75498548 rs1466663 A G 8767.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8796,879,0 15 75499602 rs12591506 C A 10267.8 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,322:322:99:10296,966,0 15 75499619 rs11072531 T C 9992.77 PASS AC=2;AF=1;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,319:319:99:10021,958,0 15 75499861 rs11072532 G A 7535.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7564,770,0 15 75499995 rs28509789 T G 3715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.25;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=-0.928;QD=11.03;ReadPosRankSum=0.34;SOR=0.709 GT:AD:DP:GQ:PL 0/1:180,157:337:99:3744,0,4598 15 75503147 rs3743211 G A 7003.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7032,693,0 15 75562409 rs368756943 G A 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.404;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=15.127;MLEAC=1;MLEAF=0.5;MQ=43.61;MQRankSum=-7.723;QD=4.59;ReadPosRankSum=1.102;SOR=1.417 GT:AD:DP:GQ:PL 0/1:209,91:300:99:1404,0,5228 15 75585461 rs202147246 C T 343.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.79;MLEAC=1;MLEAF=0.5;MQ=35.08;MQRankSum=-3.457;QD=3.21;ReadPosRankSum=2.279;SOR=0.495 GT:AD:DP:GQ:PL 0/1:79,28:107:99:372,0,1862 15 75650836 rs1128933 G A 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.286;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.142;SOR=0.609 GT:AD:DP:GQ:PL 0/1:111,116:227:99:2908,0,2710 15 75650972 rs3809549 G A 2306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.473;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=61.61;MQRankSum=5.361;QD=13.33;ReadPosRankSum=1.591;SOR=0.749 GT:AD:DP:GQ:PL 0/1:84,89:173:99:2335,0,2077 15 75653378 rs7174408 T C 6200.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6229,597,0 15 75664570 rs4886696 A T 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.45;ReadPosRankSum=-0.537;SOR=0.784 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,34:69:99:0|1:75664570_A_T:1301,0,1938 15 75816649 rs12904319 A C 958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.199;SOR=0.588 GT:AD:DP:GQ:PL 0/1:29,46:75:99:987,0,550 15 75932129 rs13737 G T 3999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=5.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=-1.468;SOR=0.48 GT:AD:DP:GQ:PL 0/1:142,159:301:99:4028,0,3485 15 75969335 rs77237106 C T 3399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.332;SOR=0.759 GT:AD:DP:GQ:PL 0/1:152,136:288:99:3428,0,3842 15 75970070 rs8023621 C T 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.035;SOR=0.702 GT:AD:DP:GQ:PL 0/1:118,80:198:99:1914,0,3161 15 75977920 rs62027240 A G 2306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.253;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.842;MLEAC=1;MLEAF=0.5;MQ=56;MQRankSum=-7.73;QD=10.58;ReadPosRankSum=-0.507;SOR=0.971 GT:AD:DP:GQ:PL 0/1:121,97:218:99:2335,0,2896 15 75979782 rs8030131 G T 2839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=7.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=1.125;SOR=0.983 GT:AD:DP:GQ:PL 0/1:140,117:257:99:2868,0,3709 15 75980112 rs4414463 A G 2646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-1.715;SOR=0.805 GT:AD:DP:GQ:PL 0/1:144,118:262:99:2675,0,3611 15 75981507 rs12900539 A G 3499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.164;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=5.08;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=0.118;QD=14.11;ReadPosRankSum=-0.24;SOR=0.553 GT:AD:DP:GQ:PL 0/1:117,131:248:99:3528,0,2898 15 75981963 . G A 2864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0;DP=386;ExcessHet=3.0103;FS=4.782;MLEAC=1;MLEAF=0.5;MQ=59.36;MQRankSum=3.601;QD=7.42;ReadPosRankSum=-0.94;SOR=0.49 GT:AD:DP:GQ:PL 0/1:252,134:386:99:2893,0,6739 15 75982185 rs77341302 T C 3415.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.288;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=7.946;MLEAC=1;MLEAF=0.5;MQ=51.92;MQRankSum=-13.263;QD=16.74;ReadPosRankSum=-1.635;SOR=0.968 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,92:204:99:0|1:75982185_T_C:3444,0,5859 15 75982186 rs199819221 G A 3415.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.355;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=9.226;MLEAC=1;MLEAF=0.5;MQ=51.98;MQRankSum=-13.355;QD=16.91;ReadPosRankSum=-1.29;SOR=1.004 GT:AD:DP:GQ:PGT:PID:PL 0/1:113,89:202:99:0|1:75982185_T_C:3444,0,5859 15 75982428 rs7182906 C T 3260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=0.031;QD=12.79;ReadPosRankSum=-1.545;SOR=0.542 GT:AD:DP:GQ:PL 0/1:127,128:255:99:3289,0,3415 15 76017452 rs55905564 C T 2370.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2399,240,0 15 76136194 rs2047866 C T 2630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.01;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.916;SOR=0.689 GT:AD:DP:GQ:PL 0/1:125,114:239:99:2659,0,3215 15 76170332 . G A 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.57;ReadPosRankSum=0.714;SOR=0.69 GT:AD:DP:GQ:PL 0/1:60,40:100:99:785,0,1595 15 76191802 rs335689 G A 2286.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.55;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2315,249,0 15 76630303 rs4636879 T C 5737.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5766,558,0 15 76632907 rs7180257 A G 4644.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4673,468,0 15 77241568 rs1711018 T C 2962.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2991,306,0 15 77324734 rs149195362 C T 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=0.611;SOR=0.736 GT:AD:DP:GQ:PL 0/1:101,78:179:99:1638,0,2322 15 77344793 rs11737 T A 3940.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.035;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.41;ReadPosRankSum=-0.468;SOR=0.365 GT:AD:DP:GQ:PL 1/1:1,133:134:99:3969,392,0 15 77407114 rs1867780 C G 4950.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4979,500,0 15 77471653 rs371123857 C T 2431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=4.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=-0.258;SOR=0.741 GT:AD:DP:GQ:PL 0/1:143,114:257:99:2460,0,3587 15 77907145 rs3743481 G A 6637.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6666,654,0 15 77907535 rs2271396 C G 4990.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.9;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,139:139:99:5019,418,0 15 77907775 rs2271397 T C 7197.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.99;SOR=1.136 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,160:160:99:1|1:77907775_T_C:7226,491,0 15 77907784 rs2271398 G A 7454.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.11;SOR=1.262 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,169:169:99:1|1:77907775_T_C:7483,512,0 15 78310306 rs35403054 GA G 416.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.114;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=6.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=0.038;SOR=0.133 GT:AD:DP:GQ:PL 0/1:10,22:34:99:454,0,150 15 78337225 rs4886995 G A 706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.209;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=0.155;SOR=1.092 GT:AD:DP:GQ:PL 0/1:44,31:75:99:735,0,1230 15 78369972 rs7176425 G C 3843.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3872,387,0 15 78390414 rs2289524 T C 3707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=1.763;SOR=0.633 GT:AD:DP:GQ:PL 0/1:134,155:289:99:3736,0,3013 15 78398146 rs10456 G A 2439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.075;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.544;SOR=0.859 GT:AD:DP:GQ:PL 0/1:107,100:207:99:2468,0,2711 15 78441769 rs11555541 T C 3586.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3615,360,0 15 78458485 rs3816253 T C 3678.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3707,372,0 15 78463890 rs11638547 G T 1652.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.55;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1681,180,0 15 78466127 rs2304824 T C 6485.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.43;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6514,583,0 15 78557086 rs66489434 GC G 3576.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;MQRankSum=0.183;QD=29.56;ReadPosRankSum=-1.389;SOR=0.58 GT:AD:DP:GQ:PL 1/1:1,120:121:99:3614,333,0 15 78567853 rs967821 G T 387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.31;ReadPosRankSum=1.62;SOR=0.404 GT:AD:DP:GQ:PL 0/1:52,21:73:99:416,0,1411 15 78578449 . A G 1124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.223;ClippingRankSum=0;DP=150;ExcessHet=3.0103;FS=6.417;MLEAC=1;MLEAF=0.5;MQ=60.5;MQRankSum=-1.933;QD=7.5;ReadPosRankSum=-1.863;SOR=1.032 GT:AD:DP:GQ:PL 0/1:99,51:150:99:1153,0,2459 15 78578482 rs3832993 TG T 2507.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60.62;MQRankSum=1.746;QD=21.43;ReadPosRankSum=-1.36;SOR=0.593 GT:AD:DP:GQ:PL 0/1:34,83:117:99:2545,0,843 15 78632830 rs1127472 C G 2421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.353;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.102;SOR=0.84 GT:AD:DP:GQ:PL 0/1:139,101:240:99:2450,0,3404 15 78758677 rs2958720 G C 3864.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3893,378,0 15 78780104 rs2230940 T C 2266.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2295,227,0 15 78786410 rs4887060 A C 4140.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4169,403,0 15 78789488 rs13180 C T 2382.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=1.31 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2411,240,0 15 78841220 rs8053 T C 5591.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.72;ReadPosRankSum=1.207;SOR=0.256 GT:AD:DP:GQ:PL 1/1:1,181:182:99:5620,508,0 15 78882925 rs16969968 G A 4502.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.056 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4531,456,0 15 78894339 rs1051730 G A 7063.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7092,699,0 15 78894357 rs55958820 G T 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=9.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.815;SOR=0.927 GT:AD:DP:GQ:PL 0/1:113,115:228:99:2670,0,3014 15 78909452 rs3743075 T C 2248.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2277,240,0 15 78909480 rs3743074 G A 1775.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.91;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1804,198,0 15 78911181 rs8040868 T C 5886.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5915,557,0 15 78911261 rs2869547 T C 4644.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.276 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4673,471,0 15 78913067 rs60706203 ACAG A 8010.73 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=44.26;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,181:191:99:8048,548,0 15 78917399 rs1948 A G 7018.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7047,707,0 15 79051759 rs12286 G A 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.036;SOR=0.774 GT:AD:DP:GQ:PL 0/1:161,116:279:99:2668,0,4305 15 79054900 rs7495616 C G 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.6;MLEAC=1;MLEAF=0.5;MQ=55.83;MQRankSum=-8.735;QD=8.39;ReadPosRankSum=-1.298;SOR=0.783 GT:AD:DP:GQ:PL 0/1:98,64:162:99:1387,0,2725 15 79054911 rs11852980 A G 1802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=5.361;MLEAC=1;MLEAF=0.5;MQ=55.42;MQRankSum=-9.427;QD=12.18;ReadPosRankSum=-0.711;SOR=1.186 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,54:148:99:0|1:79054911_A_G:1831,0,4972 15 79054919 rs11853054 G A 1659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=5.984;MLEAC=1;MLEAF=0.5;MQ=54.97;MQRankSum=-9.557;QD=12.67;ReadPosRankSum=-1.743;SOR=1.301 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,46:131:99:0|1:79054911_A_G:1688,0,4737 15 79058013 rs2929155 C T 2561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.18;MQRankSum=-8.992;QD=9.32;ReadPosRankSum=1.093;SOR=0.698 GT:AD:DP:GQ:PL 0/1:150,125:275:99:2590,0,3713 15 79058298 rs11630236 T C 1556.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.243;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.15;MQRankSum=-0.507;QD=15.57;ReadPosRankSum=0.319;SOR=0.704 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1585,0,1917 15 79058307 rs200436984 A T 451.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.305;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.5;MQ=39.01;MQRankSum=-3.788;QD=4.07;ReadPosRankSum=-3.435;SOR=0.443 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,19:111:99:0|1:79058307_A_T:480,0,4905 15 79058317 . C T 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.966;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=6.326;MLEAC=1;MLEAF=0.5;MQ=40.77;MQRankSum=-3.466;QD=4.44;ReadPosRankSum=-2.237;SOR=0.453 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,21:121:99:0|1:79058307_A_T:566,0,5145 15 79058339 rs199823022 A C 494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.66;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=11.732;MLEAC=1;MLEAF=0.5;MQ=45.95;MQRankSum=-5.029;QD=3.32;ReadPosRankSum=0.585;SOR=0.66 GT:AD:DP:GQ:PGT:PID:PL 0/1:126,23:149:99:0|1:79058307_A_T:523,0,5734 15 79058375 rs201636673 A G 328.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=9.666;MLEAC=1;MLEAF=0.5;MQ=52.02;MQRankSum=-6.772;QD=1.59;ReadPosRankSum=2.933;SOR=0.871 GT:AD:DP:GQ:PGT:PID:PL 0/1:185,22:207:99:0|1:79058375_A_G:357,0,8009 15 79058378 rs201462332 A G 322.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=9.687;MLEAC=1;MLEAF=0.5;MQ=52.15;MQRankSum=-6.83;QD=1.55;ReadPosRankSum=2.717;SOR=0.868 GT:AD:DP:GQ:PGT:PID:PL 0/1:186,22:208:99:0|1:79058375_A_G:351,0,8074 15 79058572 rs1809421 T G 10883.8 PASS AC=2;AF=1;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,356:356:99:10912,1067,0 15 79058923 rs1809422 G A 7591.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.26;QD=31.11;SOR=1.142 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7620,732,0 15 79058951 rs28699256 T C 3514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=6.457;MLEAC=1;MLEAF=0.5;MQ=59.38;MQRankSum=-3.212;QD=12.78;ReadPosRankSum=-0.778;SOR=0.429 GT:AD:DP:GQ:PL 0/1:134,141:275:99:3543,0,3401 15 79059703 rs1809424 T C 2381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.247;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=59.46;MQRankSum=-3.55;QD=14.7;ReadPosRankSum=0.679;SOR=0.792 GT:AD:DP:GQ:PGT:PID:PL 0/1:76,86:162:99:0|1:79059670_T_C:2410,0,8937 15 79064080 rs11635931 G A 2112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=0.847;SOR=0.679 GT:AD:DP:GQ:PL 0/1:134,95:229:99:2141,0,3651 15 79064143 rs11635870 C G 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.977;SOR=0.616 GT:AD:DP:GQ:PL 0/1:122,104:226:99:2439,0,2998 15 79065562 rs8036224 A G 6216.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.65;QD=30.03;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6245,621,0 15 79066653 rs57708073 A G 6491.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.7;QD=31.98;SOR=1.325 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6520,608,0 15 79066953 rs202215540 G A 187.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.04;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=6.374;MLEAC=1;MLEAF=0.5;MQ=58.1;MQRankSum=-13.444;QD=0.94;ReadPosRankSum=-1.799;SOR=1.447 GT:AD:DP:GQ:PGT:PID:PL 0/1:179,20:199:99:0|1:79066932_A_G:216,0,9539 15 79083120 rs2127898 G A 4504.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.92;QD=30.85;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4533,438,0 15 79089007 rs3743057 T C 7172.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7201,734,0 15 79092603 rs6495329 G A 8764.77 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.76;QD=28.18;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,311:311:99:8793,924,0 15 79185877 rs1836556 A G 721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.62;ReadPosRankSum=0.788;SOR=0.264 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,19:35:99:0|1:79185877_A_G:750,0,943 15 79185898 rs1435163 C A 811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.29;ReadPosRankSum=0.197;SOR=0.34 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,22:40:99:0|1:79185877_A_G:840,0,977 15 79217690 rs2044226 G C 2337.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2366,246,0 15 79224727 rs78155742 T C 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.642;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.26;ReadPosRankSum=0.298;SOR=0.693 GT:AD:DP:GQ:PL 0/1:88,55:143:99:1210,0,2000 15 79224747 rs13345 C T 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.959;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.1;ReadPosRankSum=-0.385;SOR=0.885 GT:AD:DP:GQ:PL 0/1:95,57:152:99:1260,0,2180 15 79231518 rs11638844 A G 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.609;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=0.544;SOR=0.836 GT:AD:DP:GQ:PL 0/1:50,40:90:99:865,0,1080 15 79231523 rs35398112 G GA 644.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.095;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=-0.407;SOR=0.671 GT:AD:DP:GQ:PL 0/1:43,32:78:99:682,0,829 15 79237247 rs1036938 C G 5992.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6021,591,0 15 79237324 rs1036939 C A 3273.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.807;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;MQRankSum=0.193;QD=30.31;ReadPosRankSum=0.08;SOR=0.627 GT:AD:DP:GQ:PL 1/1:1,107:108:99:3302,313,0 15 79254480 rs4778732 T A 3021.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.28;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3050,344,0 15 79356742 rs62011246 C T 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=0.239;SOR=0.495 GT:AD:DP:GQ:PL 0/1:76,67:143:99:1447,0,1900 15 79586361 rs8038778 T C 7343.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7372,716,0 15 79606137 rs3825933 G A 5104.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5133,519,0 15 79614418 rs906439 A G 8807.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,301:301:99:8836,902,0 15 79750307 rs1004724 T C 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.44;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-2.201;SOR=0.597 GT:AD:DP:GQ:PL 0/1:128,115:243:99:2723,0,2992 15 79755604 rs2297773 A G 2973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.427;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=3.063;QD=11.57;ReadPosRankSum=1.401;SOR=0.649 GT:AD:DP:GQ:PL 0/1:129,128:257:99:3002,0,2851 15 80137560 rs8923 T C 2625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.999;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=0.289;SOR=0.706 GT:AD:DP:GQ:PL 0/1:135,104:239:99:2654,0,3208 15 80191343 rs7257 G A 2645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-2.283;SOR=0.63 GT:AD:DP:GQ:PL 0/1:120,110:230:99:2674,0,2970 15 80259955 rs146807490 TGTAA T 3022.73 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.45;SOR=0.752 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,68:68:99:1|1:80259955_TGTAA_T:3060,205,0 15 80259964 rs16971619 C T 3031.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.25;SOR=0.784 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,67:67:99:1|1:80259955_TGTAA_T:3060,205,0 15 80260014 rs8026803 T C 1518.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=1.48 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1547,156,0 15 80263217 rs3826007 C T 6176.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6205,586,0 15 80263345 rs1138358 A C 7235.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7264,689,0 15 80263406 rs1138357 C T 5755.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.442 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5784,573,0 15 80414173 rs1522636 C G 2775.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2804,264,0 15 80472561 rs1801374 C T 1230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=0.199;SOR=0.762 GT:AD:DP:GQ:PL 0/1:64,62:126:99:1259,0,1398 15 80884025 rs4072568 G A 7849.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.971;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.18;ReadPosRankSum=-1.29;SOR=0.778 GT:AD:DP:GQ:PL 1/1:2,267:269:99:7878,716,0 15 80987812 rs62007944 T C 5531.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5560,555,0 15 81212521 rs2271160 T C 2555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.359;SOR=0.707 GT:AD:DP:GQ:PL 0/1:109,114:223:99:2584,0,2604 15 81212608 rs1553647 G A 5305.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5334,524,0 15 81582868 rs8031107 G A 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.883;SOR=0.754 GT:AD:DP:GQ:PL 0/1:38,43:81:99:982,0,917 15 81592802 rs11073001 A G 935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.648;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.186;SOR=1.064 GT:AD:DP:GQ:PL 0/1:58,39:97:99:964,0,1499 15 81600995 rs4238526 A G 3534.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3563,357,0 15 81616329 rs74028612 G A 1795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.09;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.955;SOR=0.622 GT:AD:DP:GQ:PL 0/1:86,89:175:99:1824,0,2228 15 81624768 rs4417518 C T 6691.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6720,652,0 15 81625028 rs8031046 C T 2983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.232;SOR=0.548 GT:AD:DP:GQ:PL 0/1:135,130:265:99:3012,0,3403 15 81625336 rs77430896 G A 2542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.442;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.108;SOR=0.753 GT:AD:DP:GQ:PL 0/1:124,113:237:99:2571,0,3378 15 81631863 rs74792181 G A 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-0.725;SOR=0.639 GT:AD:DP:GQ:PL 0/1:36,44:80:99:1034,0,783 15 81636267 rs7161991 C T 5207.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.065 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5236,522,0 15 82443939 rs4725 G A 7193.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7222,736,0 15 82444437 rs905450 A G 7564.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7593,715,0 15 82512429 rs2292189 C G 5112.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.05;QD=30.25;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5141,506,0 15 82530630 rs1972460 A G 4428.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=30.13;SOR=1.5 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4457,440,0 15 82558034 rs3858954 G C 3000.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.71;QD=29.71;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3029,302,0 15 82563991 rs16973457 C T 3148.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3177,321,0 15 82636940 rs62010120 T C 1230.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.43;QD=37.3;SOR=3.193 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1259,99,0 15 82637061 rs201670904 C T 6633.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=11.432;MLEAC=2;MLEAF=1;MQ=55.77;MQRankSum=4.038;QD=42.25;ReadPosRankSum=6.38;SOR=0.043 GT:AD:DP:GQ:PGT:PID:PL 1/1:5,152:157:99:1|1:82637061_C_T:6662,374,0 15 82637079 rs200685620 C T 6422.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=8.654;MLEAC=2;MLEAF=1;MQ=55.77;MQRankSum=5.165;QD=41.44;ReadPosRankSum=3.635;SOR=0.112 GT:AD:DP:GQ:PGT:PID:PL 1/1:7,148:155:99:1|1:82637061_C_T:6451,240,0 15 82637159 . C G 398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.004;ClippingRankSum=0;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.81;MQRankSum=2.705;QD=23.46;ReadPosRankSum=-3.072;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,13:17:99:0|1:82637159_C_G:427,0,359 15 82637163 . C T 80.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.88;MQRankSum=1.282;QD=13.46;ReadPosRankSum=-1.834;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,2:6:99:0|1:82637159_C_G:109,0,389 15 82637164 . T C 43.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.88;MQRankSum=1.282;QD=7.29;ReadPosRankSum=-1.834;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 0/1:4,2:6:72:0|1:82637159_C_G:72,0,392 15 82637237 rs375080778 C T 100.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.06;MQRankSum=1.282;QD=16.79;ReadPosRankSum=1.834;SOR=1.329 GT:AD:DP:GQ:PL 0/1:2,4:6:46:129,0,46 15 82637273 . CAGCCTCTCCTCCTGTTCACATAGCCTCTCCTCCTGTTCACACAGCCTCTCCTCCTGTTCATGTAGCCTCTCCTCCTGTTCACGT C 44.73 PASS AC=1;AF=0.5;AN=2;ClippingRankSum=-0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.07;MQRankSum=-1.383;QD=11.18;SOR=2.303 GT:AD:DP:GQ:PL 0/1:2,2:4:75:82,0,75 15 83224696 rs1145171 C T 5498.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5527,527,0 15 83240293 rs783544 A C 5838.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5867,534,0 15 83378366 rs200226421 G A 2719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=2.225;SOR=0.875 GT:AD:DP:GQ:PL 0/1:127,123:250:99:2748,0,2976 15 83481880 rs35270670 A G 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.708;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=10.76;ReadPosRankSum=0.659;SOR=0.856 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1449,0,1749 15 83561606 rs41310978 A G 1305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.139;SOR=0.78 GT:AD:DP:GQ:PL 0/1:53,53:106:99:1334,0,1384 15 83657800 rs61738562 G T 1196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=55.54;MQRankSum=-0.778;QD=8.31;ReadPosRankSum=1.266;SOR=0.621 GT:AD:DP:GQ:PL 0/1:89,55:144:99:1225,0,2215 15 83680287 rs4842860 A G 3163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=6.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.565;SOR=1.054 GT:AD:DP:GQ:PL 0/1:120,121:241:99:3192,0,3170 15 84488636 rs4483821 A G 4836.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4865,489,0 15 84539619 rs4144691 C G 4061.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4090,387,0 15 84581904 rs4842923 T C 6589.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.184 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6618,645,0 15 84582124 rs4842838 G T 6198.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.033;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.969;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.24;ReadPosRankSum=-0.573;SOR=0.923 GT:AD:DP:GQ:PL 1/1:1,211:212:99:6227,625,0 15 84639350 rs2277849 C T 4870.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.67;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4899,524,0 15 84651185 rs8031704 C A 6271.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6300,618,0 15 84651290 rs7176737 T C 10099.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.925;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.45;ReadPosRankSum=0.173;SOR=0.784 GT:AD:DP:GQ:PL 1/1:2,341:343:99:10128,980,0 15 84850899 rs55689941 T G 335.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.28;QD=37.31;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,9:9:27:364,27,0 15 84909342 rs369954789 T C 1320.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.63;QD=31.45;SOR=5.235 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1349,126,0 15 85149771 rs2271433 G T 3272.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=1.958 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3301,306,0 15 85163998 rs2044502 G C 6186.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6215,603,0 15 85188994 rs2271432 T C 8661.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8690,870,0 15 85333953 rs2241645 A G 5211.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5240,500,0 15 85341859 rs8182086 G A 7656.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.132;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.26;ReadPosRankSum=-0.782;SOR=0.733 GT:AD:DP:GQ:PL 1/1:2,251:253:99:7685,707,0 15 85360101 rs11857356 T C 6916.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=1.184 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6945,662,0 15 85382193 rs1896864 C A 2568.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.338 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2597,267,0 15 85383839 rs3803406 G A 7839.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7868,753,0 15 85401259 rs306197 C T 9567.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.54;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9596,882,0 15 85401419 rs167379 T C 8981.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.89;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,265:265:99:9010,795,0 15 85403105 rs34775428 C A 12483.8 PASS AC=2;AF=1;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,419:419:99:12512,1256,0 15 85405995 rs187316 T C 9801.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9830,954,0 15 85447431 rs2290272 G A 5610.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5639,560,0 15 85448875 rs8187758 C A 2841.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2870,297,0 15 85467207 rs3825875 T C 4024.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.072 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4053,402,0 15 85476441 rs2305367 G A 4307.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4336,437,0 15 85478410 rs2242048 A G 3213.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3242,318,0 15 85607670 rs11073917 G T 407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0.73;SOR=0.974 GT:AD:DP:GQ:PL 0/1:27,19:46:99:436,0,715 15 86122654 rs2061821 T C 2669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.171;SOR=0.708 GT:AD:DP:GQ:PL 0/1:97,112:209:99:2698,0,2437 15 86122779 rs2061822 T C 3356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=6.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=-1.049;SOR=0.724 GT:AD:DP:GQ:PL 0/1:105,132:237:99:3385,0,2511 15 86122916 rs2061823 T C 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.47;SOR=0.907 GT:AD:DP:GQ:PL 0/1:92,91:183:99:2275,0,2464 15 86123019 rs2061824 C T 1585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=5.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.62;ReadPosRankSum=0.347;SOR=0.86 GT:AD:DP:GQ:PL 0/1:134,74:208:99:1614,0,3541 15 86123364 rs7177107 G A 2486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=1.591;SOR=0.671 GT:AD:DP:GQ:PL 0/1:147,109:256:99:2515,0,3792 15 86123833 rs4075256 T C 2987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.631;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.572;SOR=0.568 GT:AD:DP:GQ:PL 0/1:117,113:230:99:3016,0,2816 15 86123924 rs4075255 C T 2755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.168;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=4.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.254;SOR=0.718 GT:AD:DP:GQ:PL 0/1:131,109:240:99:2784,0,3273 15 86123988 rs4075254 G A 2227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.993;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-1.306;SOR=0.594 GT:AD:DP:GQ:PL 0/1:128,98:226:99:2256,0,3538 15 86124419 rs4843073 C T 2727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.349;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.004;SOR=0.719 GT:AD:DP:GQ:PL 0/1:114,107:221:99:2756,0,2780 15 86124483 rs4843074 C G 2889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.05;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-0.086;SOR=0.644 GT:AD:DP:GQ:PL 0/1:111,108:219:99:2918,0,2900 15 86124555 rs4843075 G A 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.564;SOR=0.73 GT:AD:DP:GQ:PL 0/1:97,101:198:99:2415,0,2606 15 86124946 rs7162168 T C 3800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.075;SOR=0.747 GT:AD:DP:GQ:PL 0/1:138,150:288:99:3829,0,3543 15 86124968 rs11633087 G A 3794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.645;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-2.02;SOR=0.774 GT:AD:DP:GQ:PL 0/1:136,145:281:99:3823,0,3319 15 86125031 rs7178065 G A 2770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.647;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.153;SOR=0.572 GT:AD:DP:GQ:PL 0/1:131,108:239:99:2799,0,3413 15 86278395 rs17638180 A C 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.15;ReadPosRankSum=0.622;SOR=0.673 GT:AD:DP:GQ:PL 0/1:91,52:143:99:1194,0,2393 15 86287867 rs2614668 G A 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=1.718;SOR=0.467 GT:AD:DP:GQ:PL 0/1:55,66:121:99:1464,0,1202 15 86287910 rs11073517 C T 1333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.737;SOR=0.762 GT:AD:DP:GQ:PL 0/1:63,63:126:99:1362,0,1366 15 86311593 rs8041288 C A 8131.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8160,824,0 15 86312294 rs35582838 C T 7560.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7589,733,0 15 86313048 rs2614657 T C 3584.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.568 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3613,338,0 15 86623248 rs4887258 G A 1821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.688;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.993;SOR=0.726 GT:AD:DP:GQ:PL 0/1:87,78:165:99:1850,0,1971 15 86702241 rs79814209 C T 3272.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3301,347,0 15 86940622 rs4362360 T C 4261.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4290,425,0 15 87217488 rs11853730 T C 3518.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=1.417 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3547,351,0 15 87217613 rs8028043 A G 4707.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4736,471,0 15 88522657 . G A 972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.784;ClippingRankSum=0;DP=103;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=0.742;SOR=0.796 GT:AD:DP:GQ:PL 0/1:59,44:103:99:1001,0,1290 15 88576185 rs2229910 G C 2855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.386;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=3.262;SOR=0.611 GT:AD:DP:GQ:PL 0/1:153,127:283:99:2884,0,3495 15 88679785 rs1863480 G A 5500.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.21;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5529,584,0 15 89169614 rs3743476 A G 3617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.507;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.417;SOR=0.604 GT:AD:DP:GQ:PL 0/1:145,142:287:99:3646,0,3552 15 89169858 rs8027765 A G 8652.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8681,852,0 15 89172558 rs3743475 G C 8476.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8505,836,0 15 89182596 rs3200942 A G 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.649;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.222;SOR=0.478 GT:AD:DP:GQ:PL 0/1:50,45:95:99:1307,0,1282 15 89182702 rs35008759 T C 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.941;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.878;SOR=0.693 GT:AD:DP:GQ:PL 0/1:92,66:158:99:1577,0,2293 15 89195526 rs1137166 A G 4645.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.53 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4674,438,0 15 89391160 rs2272023 C A 7179.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7208,747,0 15 89392745 rs1568116 T C 6215.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.254 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6244,605,0 15 89398105 rs2351491 C T 8192.77 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=1.26 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8221,825,0 15 89398330 rs3743399 G A 10205.8 PASS AC=2;AF=1;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,330:330:99:10234,989,0 15 89398407 rs3743398 C T 3338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=16.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.992;SOR=0.877 GT:AD:DP:GQ:PL 0/1:124,130:254:99:3367,0,3326 15 89398605 rs938608 G T 10649.8 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.43;SOR=0.837 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,251:251:99:1|1:89398605_G_T:10678,766,0 15 89398631 rs938609 T A 11399.8 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=41.6;SOR=1.251 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,274:274:99:1|1:89398605_G_T:11428,833,0 15 89400339 rs2882676 A C 8183.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.431;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=34.82;ReadPosRankSum=-0.829;SOR=1.038 GT:AD:DP:GQ:PL 1/1:2,233:235:99:8212,634,0 15 89401109 rs4932439 A G 7425.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7454,702,0 15 89401615 rs3825994 T G 6629.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6658,664,0 15 89402051 rs1042630 A G 7422.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7451,714,0 15 89402239 rs1042631 T C 8451.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8480,822,0 15 89402596 rs698621 T G 7033.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.939 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7062,729,0 15 89415247 rs3817428 C G 1463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=0.294;SOR=0.701 GT:AD:DP:GQ:PL 0/1:41,58:99:99:1492,0,994 15 89417238 rs1126823 A G 2933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.809;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.604;SOR=0.698 GT:AD:DP:GQ:PL 0/1:138,125:263:99:2962,0,3228 15 89417629 rs2280465 G A 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.077;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.265;SOR=0.929 GT:AD:DP:GQ:PL 0/1:56,51:107:99:1169,0,1328 15 89421327 rs2280463 A G 3208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.253;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-1.459;SOR=0.688 GT:AD:DP:GQ:PL 0/1:118,124:242:99:3237,0,2594 15 89421405 rs7182726 G A 2167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.33;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=2.319;SOR=0.748 GT:AD:DP:GQ:PL 0/1:73,87:160:99:2196,0,1868 15 89450546 rs1878327 C T 5260.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5289,539,0 15 89450587 rs1878326 G T 4264.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.075;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.82;ReadPosRankSum=1.591;SOR=0.365 GT:AD:DP:GQ:PL 1/1:1,147:148:99:4293,433,0 15 89456544 rs4945 G T 5816.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5845,564,0 15 89736558 rs6496562 T C 2468.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2497,245,0 15 89754954 rs950541 G A 2672.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2701,273,0 15 89804043 rs17803620 C T 3220.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3249,328,0 15 89806710 rs1981623 C T 1420.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1449,149,0 15 89826496 rs9806604 C T 2568.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2597,264,0 15 89836228 rs2283432 G C 3303.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.71;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3332,303,0 15 89838236 rs7183618 G A 5652.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5681,593,0 15 89844688 rs2159081 A C 2758.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=1.305 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2787,279,0 15 89858602 rs1138465 T C 2485.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2514,264,0 15 89860786 rs2307438 A C 1944.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1973,189,0 15 89861826 rs2307441 T C 4622.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4651,465,0 15 89862341 rs2302084 A G 4155.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4184,390,0 15 89866657 rs113994097 C G 600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.511;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=2.283;SOR=0.818 GT:AD:DP:GQ:PL 0/1:43,30:73:99:629,0,964 15 90126121 rs10775247 C T 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.339;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-1.484;SOR=1.037 GT:AD:DP:GQ:PL 0/1:86,80:166:99:1955,0,2012 15 90128966 rs11629584 C T 1909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.377;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=0.846;SOR=0.964 GT:AD:DP:GQ:PL 0/1:70,76:146:99:1938,0,1548 15 90129188 rs1540504 T C 2807.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.83;SOR=1.911 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2836,249,0 15 90138670 rs8042146 C T 2988.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3017,303,0 15 90138741 rs202176600 C T 1602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.766;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.922;SOR=0.682 GT:AD:DP:GQ:PL 0/1:60,66:126:99:1631,0,1406 15 90168108 rs894157 C T 5840.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5869,558,0 15 90168693 rs1866928 T A 2688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.062;SOR=0.687 GT:AD:DP:GQ:PL 0/1:86,107:193:99:2717,0,2042 15 90170237 rs3743372 C T 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.468;SOR=0.664 GT:AD:DP:GQ:PL 0/1:78,92:170:99:2150,0,1752 15 90172600 rs74251725 G A 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.995;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.928;SOR=1.071 GT:AD:DP:GQ:PL 0/1:40,51:91:99:1264,0,1089 15 90173734 rs35820949 C CAG 1849.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.299;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.492;QD=18.13;ReadPosRankSum=1.139;SOR=0.914 GT:AD:DP:GQ:PL 0/1:53,49:102:99:1887,0,2297 15 90174789 rs9672286 C T 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.061;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=4.136;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.261;SOR=0.453 GT:AD:DP:GQ:PL 0/1:121,80:201:99:1901,0,3152 15 90174824 rs12900805 C T 2015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-0.788;SOR=0.761 GT:AD:DP:GQ:PL 0/1:122,89:211:99:2044,0,3147 15 90174955 rs9672296 C T 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.789;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=0.196;SOR=0.5 GT:AD:DP:GQ:PL 0/1:73,45:118:99:1000,0,2279 15 90176073 rs3803530 C A 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.91;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.577;SOR=0.544 GT:AD:DP:GQ:PL 0/1:115,90:205:99:2093,0,2923 15 90176239 . T TAGGGAGGGAGGGAGGG 778.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.51;ClippingRankSum=0;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.542;QD=13.91;ReadPosRankSum=0.318;SOR=0.544 GT:AD:DP:GQ:PL 0/1:40,16:56:99:816,0,6245 15 90176432 rs3803531 T G 6816.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6845,666,0 15 90190048 rs1110060 A G 4716.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4745,444,0 15 90191827 rs8037349 T C 3714.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=2.024 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3743,335,0 15 90195967 rs8179066 C G 7214.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=1.031 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7243,732,0 15 90210257 rs2304796 G A 3638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.861;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.92;ReadPosRankSum=-0.125;SOR=0.82 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,94:166:99:0|1:90210257_G_A:3667,0,4123 15 90210263 rs2304795 A G 3660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.79;ReadPosRankSum=0.185;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,93:168:99:0|1:90210257_G_A:3689,0,4173 15 90213229 rs6496589 G C 3917.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.77;SOR=1.55 GT:AD:DP:GQ:PL 1/1:0,116:118:99:3946,347,0 15 90226947 rs7169981 C A 1644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.609;SOR=0.693 GT:AD:DP:GQ:PL 0/1:70,66:136:99:1673,0,1837 15 90248819 rs17238056 A T 509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.8;ReadPosRankSum=1.487;SOR=0.596 GT:AD:DP:GQ:PL 0/1:46,29:75:99:538,0,1049 15 90293776 rs2305441 A C 5886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.69;ReadPosRankSum=0.819;SOR=0.77 GT:AD:DP:GQ:PGT:PID:PL 0/1:158,157:315:99:0|1:90293776_A_C:5915,0,8889 15 90293794 rs2305440 G C 5811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.69;ReadPosRankSum=-1.182;SOR=0.787 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,155:311:99:0|1:90293776_A_C:5840,0,8859 15 90294306 rs6496598 C G 3773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=0.092;SOR=0.674 GT:AD:DP:GQ:PL 0/1:127,144:271:99:3802,0,3433 15 90320120 rs200021459 GAGGGGCAGGGGCAAGGGCAGGGGC G 5043.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.115;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.5;MQ=62.7;MQRankSum=-3.682;QD=16.01;ReadPosRankSum=0.547;SOR=0.56 GT:AD:DP:GQ:PL 0/1:176,139:315:99:5081,0,6632 15 90320134 rs199821487 AGGGCAGGGGCAG A 6537.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.5;MQ=62.71;MQRankSum=3.795;QD=20.56;ReadPosRankSum=0.109;SOR=0.8 GT:AD:DP:GQ:PL 0/1:142,176:318:99:6575,0,5185 15 90760991 rs1543116 T C 2587.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2616,243,0 15 90764202 rs7174036 A G 1335.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1364,138,0 15 90768271 rs11547966 C T 6265.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6294,641,0 15 90768959 rs908044 A C 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.24;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0.906;QD=10.07;ReadPosRankSum=0.186;SOR=0.815 GT:AD:DP:GQ:PL 0/1:89,71:160:99:1640,0,2153 15 90771704 rs3751656 G A 7243.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=28.19;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7272,768,0 15 90771750 rs3751655 T G 6908.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=30.71;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6937,673,0 15 90774447 rs34604050 TAGAG T 3635.73 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.34;SOR=1.525 GT:AD:DP:GQ:PL 1/1:0,82:82:99:3673,247,0 15 90784207 rs7166441 A G 2496.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=1.522 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2525,237,0 15 90784250 rs7171194 T C 3968.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=1.667 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3997,372,0 15 90794102 rs4932171 G A 1915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=1.912;SOR=0.605 GT:AD:DP:GQ:PL 0/1:96,80:176:99:1944,0,2565 15 90794845 rs2882858 G A 1308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.172;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.055;SOR=0.64 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1337,0,1560 15 90796558 rs12912620 G A 1281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.572;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=0.004;SOR=0.631 GT:AD:DP:GQ:PL 0/1:74,57:131:99:1310,0,1776 15 90800408 rs2063742 C G 2418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.865;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=4.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.93;ReadPosRankSum=-1.014;SOR=1.035 GT:AD:DP:GQ:PL 0/1:71,91:162:99:2447,0,1709 15 90800449 rs2063743 C T 2356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.27;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=2.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=1.341;SOR=0.916 GT:AD:DP:GQ:PL 0/1:76,100:176:99:2385,0,1893 15 90809633 rs9635390 G A 3093.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3122,309,0 15 90897885 rs8042825 G C 2777.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=1.559 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2806,275,0 15 90897952 rs8023776 C T 3725.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3754,382,0 15 90903311 rs2589957 A G 3507.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.09;SOR=1.48 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3536,318,0 15 90969335 rs2256388 G T 4097.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.592 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4126,404,0 15 91009484 rs2074585 G A 1699.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.33;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1728,153,0 15 91010776 rs1505936 T C 2734.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2763,270,0 15 91306241 rs12720097 G A 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.94;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=1.284;SOR=0.663 GT:AD:DP:GQ:PL 0/1:79,54:133:99:1223,0,1788 15 91424574 rs6226 G C 1637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-0.958;SOR=0.716 GT:AD:DP:GQ:PL 0/1:73,65:138:99:1666,0,1894 15 91428290 rs11539637 C T 5175.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.55;SOR=1.732 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5204,477,0 15 91428636 rs7177338 G A 6437.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6466,661,0 15 91430436 rs2071383 T C 7710.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7739,723,0 15 91430617 rs2071384 G A 2700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.257;SOR=0.618 GT:AD:DP:GQ:PL 0/1:110,119:229:99:2729,0,2535 15 91483531 rs17593423 C T 4425.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=1.304 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4454,453,0 15 91524841 rs7172758 G T 4719.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4748,474,0 15 91543761 rs11073964 C T 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.189;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.496;SOR=0.761 GT:AD:DP:GQ:PL 0/1:64,73:137:99:1825,0,1370 15 91557674 rs111274092 GAA G 920.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.297;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0;QD=10.83;ReadPosRankSum=0.767;SOR=0.654 GT:AD:DP:GQ:PL 0/1:37,48:85:99:958,0,1384 15 91561061 rs11542638 G T 957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=-0.391;SOR=0.664 GT:AD:DP:GQ:PL 0/1:67,47:114:99:986,0,1680 15 91795758 rs16945457 A C 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-0.427;SOR=0.653 GT:AD:DP:GQ:PL 0/1:107,125:232:99:3075,0,2467 15 91811749 rs3743444 G A 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.813;SOR=0.644 GT:AD:DP:GQ:PL 0/1:120,98:218:99:2078,0,2788 15 91825027 rs1117388 C T 2041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.023;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.976;SOR=0.836 GT:AD:DP:GQ:PL 0/1:83,87:170:99:2070,0,1920 15 92638193 rs2286355 G A 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.119;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=2.213;SOR=0.838 GT:AD:DP:GQ:PL 0/1:37,33:70:99:838,0,842 15 92647645 rs1517618 G C 6385.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.58;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6414,588,0 15 92937276 rs3743364 C T 5372.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.68;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,123:123:99:1|1:92937268_G_T:5401,373,0 15 93198671 rs501381 A G 6298.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=32.14;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6327,588,0 15 93198678 rs68056278 TTGGAGC T 8492.73 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;QD=44.23;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,192:192:99:8530,579,0 15 93198784 rs2438194 A G 8539.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.26;QD=29.05;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8568,885,0 15 93510603 rs4777755 A G 2938.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2967,276,0 15 93521604 rs11074121 A G 5533.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=1.1 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5562,547,0 15 93567864 rs12906163 A C 6167.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6196,620,0 15 93588336 rs4238485 A C 8543.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8572,817,0 15 93616933 rs55816698 C G 2261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=3.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.545;SOR=0.964 GT:AD:DP:GQ:PL 0/1:135,92:227:99:2290,0,3778 15 93616975 rs4598860 A G 2612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=0.107;SOR=0.735 GT:AD:DP:GQ:PL 0/1:158,119:277:99:2641,0,4135 15 94841691 rs61737195 G A 2454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.86;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=5.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.411;SOR=0.634 GT:AD:DP:GQ:PL 0/1:85,97:182:99:2483,0,2062 15 94986135 rs117165439 G C 487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.335;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=2.706;SOR=0.611 GT:AD:DP:GQ:PL 0/1:27,21:48:99:516,0,711 15 98504100 rs4965046 G C 6501.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=1.056 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6530,648,0 15 98504322 rs112100339 C T 3173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=5.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.164;SOR=0.457 GT:AD:DP:GQ:PGT:PID:PL 0/1:131,135:266:99:0|1:98504322_C_T:3202,0,3246 15 98504326 rs12101554 A G 9832.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.11;SOR=0.841 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,258:258:99:1|1:98504322_C_T:9861,787,0 15 98512622 rs5814833 CT C 2275.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.19;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=20.32;ReadPosRankSum=0.729;SOR=0.838 GT:AD:DP:GQ:PL 1/1:8,104:112:99:2313,114,0 15 98513845 rs2130882 T C 4046.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4075,404,0 15 98995052 rs56374714 G GT 8083.73 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=44.91;SOR=0.993 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,180:180:99:1|1:98995052_G_GT:8121,557,0 15 98995081 rs12101356 A G 8828.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=42.45;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,208:208:99:1|1:98995052_G_GT:8857,635,0 15 99023968 rs4528551 T G 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.827;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.218;SOR=0.693 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1566,0,1506 15 99251356 rs7174918 C T 664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=4.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.21;ReadPosRankSum=-0.461;SOR=1.223 GT:AD:DP:GQ:PL 0/1:53,28:81:99:693,0,1394 15 99456253 rs2272037 T C 1674.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.781 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1703,167,0 15 99478225 rs2229765 G A 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.95;SOR=0.626 GT:AD:DP:GQ:PL 0/1:61,65:126:99:1600,0,1648 15 99511793 rs1521484 C G 3204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.441;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.645;QD=9.57;ReadPosRankSum=-0.078;SOR=0.79 GT:AD:DP:GQ:PL 0/1:192,143:335:99:3233,0,4443 15 99511804 rs5814919 A AC 4134.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.414;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.628;QD=13.04;ReadPosRankSum=0.02;SOR=0.709 GT:AD:DP:GQ:PL 0/1:180,137:317:99:4172,0,5793 15 99645813 rs1044356 G A 3087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=5.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=2.602;SOR=0.785 GT:AD:DP:GQ:PL 0/1:130,127:257:99:3116,0,3377 15 99645862 rs11014 A C 3710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.163;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=4.922;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=1.874;SOR=0.476 GT:AD:DP:GQ:PL 0/1:118,144:262:99:3739,0,2707 15 99646107 rs60530833 A AG 11023.7 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=40.38;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,273:273:99:11061,830,0 15 99653800 rs2305445 T C 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.046;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.548;SOR=0.879 GT:AD:DP:GQ:PL 0/1:86,74:160:99:1901,0,2081 15 99669628 rs3743242 A T 2426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-2.414;SOR=0.632 GT:AD:DP:GQ:PL 0/1:121,107:228:99:2455,0,2983 15 99670161 rs3134586 C T 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=-0.49;SOR=0.857 GT:AD:DP:GQ:PL 0/1:133,86:219:99:1976,0,3465 15 99670278 rs3134587 C T 2339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.344;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.09;SOR=0.807 GT:AD:DP:GQ:PL 0/1:135,96:231:99:2368,0,3400 15 99670989 rs3743248 T C 4088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.986;SOR=0.705 GT:AD:DP:GQ:PL 0/1:153,165:318:99:4117,0,3822 15 99671760 rs260087 T C 5018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.942;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.867;SOR=0.702 GT:AD:DP:GQ:PL 0/1:202,205:407:99:5047,0,4537 15 99672722 rs2292288 A G 3558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.242;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=0.561;SOR=0.568 GT:AD:DP:GQ:PL 0/1:122,137:259:99:3587,0,2979 15 99715352 rs2602016 A G 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=1.443;SOR=0.654 GT:AD:DP:GQ:PL 0/1:71,56:127:99:1202,0,1660 15 99762041 rs78534478 C T 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.773;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.21;ReadPosRankSum=-0.34;SOR=0.693 GT:AD:DP:GQ:PL 0/1:54,82:136:99:2097,0,1213 15 100230557 rs121918530 A G 1363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.631;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.362;SOR=0.582 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1392,0,1506 15 100246936 rs325408 T C 5648.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.83;SOR=1.099 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,126:126:99:1|1:100246936_T_C:5677,391,0 15 100246942 rs325407 G A 5836.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.24;SOR=1.129 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,135:135:99:1|1:100246936_T_C:5865,415,0 15 100252709 rs72276751 CCAGCAG C 3284.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.002;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=2.234;QD=13.92;ReadPosRankSum=1.769;SOR=0.678 GT:AD:DP:GQ:PL 0/1:145,91:263:99:3322,0,8696 15 100252805 rs325400 G T 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=8.578;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.41;QD=7.74;ReadPosRankSum=1.587;SOR=1.258 GT:AD:DP:GQ:PL 0/1:149,76:225:99:1769,0,4261 15 100269309 rs6598263 T G 5472.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32;SOR=1.325 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5501,513,0 15 100269680 rs2061007 G C 2855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=1.2;SOR=0.719 GT:AD:DP:GQ:PL 0/1:114,109:223:99:2884,0,3080 15 100269796 rs6598264 A G 6408.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6437,634,0 15 100514614 rs2573652 T C 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.981;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=1.273;SOR=0.859 GT:AD:DP:GQ:PL 0/1:118,96:214:99:2503,0,2840 15 100589056 rs8028251 T C 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.011;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-0.524;SOR=0.922 GT:AD:DP:GQ:PL 0/1:122,94:216:99:2233,0,2972 15 100594271 rs28529328 G A 1783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.635;SOR=0.614 GT:AD:DP:GQ:PL 0/1:59,73:132:99:1812,0,1466 15 100672237 rs12907333 T G 8170.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.023;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=3.139;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.82;ReadPosRankSum=-0.783;SOR=0.329 GT:AD:DP:GQ:PL 1/1:1,273:274:99:8199,812,0 15 100692845 rs28567966 A G 1731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=5.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=1.03;SOR=1.154 GT:AD:DP:GQ:PL 0/1:87,76:163:99:1760,0,2294 15 100794363 rs4369638 C T 2533.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2562,275,0 15 100801698 rs4965613 G A 5840.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5869,582,0 15 100821426 rs7496614 G A 2528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.06;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=4.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.359;SOR=0.99 GT:AD:DP:GQ:PL 0/1:142,106:250:99:2557,0,3444 15 100821467 rs7496640 G A 2988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.008;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=0.847;SOR=0.774 GT:AD:DP:GQ:PL 0/1:178,128:306:99:3017,0,4344 15 100821576 rs7496668 G A 3010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=4.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.168;SOR=0.924 GT:AD:DP:GQ:PL 0/1:152,127:279:99:3039,0,3849 15 100942962 rs2439928 T C 4795.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4824,495,0 15 100943045 rs1023783 T C 1942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.419;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-0.32;SOR=0.658 GT:AD:DP:GQ:PL 0/1:76,72:148:99:1971,0,1820 15 101041896 rs1354332 T C 2496.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2525,234,0 15 101109677 rs8451 C A 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-0.909;SOR=0.693 GT:AD:DP:GQ:PL 0/1:84,66:150:99:1643,0,2182 15 101109794 rs12157 C G 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.637;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=6.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=0.541;SOR=1.162 GT:AD:DP:GQ:PL 0/1:83,66:149:99:1714,0,2434 15 101109818 rs12460 G A 1725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.321;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.85;SOR=0.905 GT:AD:DP:GQ:PL 0/1:100,73:173:99:1754,0,2589 15 101109893 rs6598356 C A 2233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.706;SOR=0.632 GT:AD:DP:GQ:PL 0/1:116,102:218:99:2262,0,2691 15 101110265 rs2411836 T A 1058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=-0.974;SOR=0.575 GT:AD:DP:GQ:PL 0/1:64,49:113:99:1087,0,1533 15 101110302 rs2411837 C G 1010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.212;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.397;SOR=0.571 GT:AD:DP:GQ:PL 0/1:53,42:95:99:1039,0,1332 15 101113862 rs12719734 C T 1360.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1389,129,0 15 101113950 rs12592868 A G 970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=6.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=1.787;SOR=0.283 GT:AD:DP:GQ:PL 0/1:49,43:92:99:999,0,1277 15 101114418 rs8039437 G A 715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=-1.084;QD=13.76;ReadPosRankSum=-1.411;SOR=0.904 GT:AD:DP:GQ:PL 0/1:23,29:52:99:744,0,630 15 101120963 rs11247226 T C 1975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.499;SOR=0.8 GT:AD:DP:GQ:PL 0/1:58,78:136:99:2004,0,1428 15 101445815 rs3803430 A G 2395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.689;SOR=0.673 GT:AD:DP:GQ:PL 0/1:80,102:182:99:2424,0,1914 15 101464915 rs11630691 T C 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.321;SOR=0.686 GT:AD:DP:GQ:PL 0/1:74,91:165:99:2054,0,1574 15 101529594 rs2412000 G A 1582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-0.251;SOR=0.65 GT:AD:DP:GQ:PL 0/1:54,64:118:99:1611,0,1232 15 101550861 . CTT C,CT 2369.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=2.097;ClippingRankSum=0;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.15;MQRankSum=0.404;QD=20.25;ReadPosRankSum=-1.17;SOR=0.61 GT:AD:DP:GQ:PL 1/2:9,31,77:133:99:2407,1406,1732,628,0,514 15 101562793 rs11247253 G A 3473.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3502,359,0 15 101591923 rs4965778 A G 5637.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=30.64;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5666,552,0 15 101595257 rs41372244 G A 4443.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4472,443,0 15 101597266 rs2924845 A G 3657.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3686,351,0 15 101606261 rs3764739 C T 7018.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7047,717,0 15 101717680 rs8024370 G T 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.32;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=4.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.386;SOR=1.009 GT:AD:DP:GQ:PL 0/1:100,85:185:99:1959,0,2512 15 101718106 rs3803423 G A 1607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.174;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.155;SOR=0.995 GT:AD:DP:GQ:PL 0/1:65,66:131:99:1636,0,1518 15 101718190 rs3803422 C T 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.322;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.31;ReadPosRankSum=-0.238;SOR=0.572 GT:AD:DP:GQ:PL 0/1:52,84:136:99:2110,0,1363 15 101718529 rs76457230 T C 2270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.856;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.183;SOR=0.618 GT:AD:DP:GQ:PL 0/1:95,91:186:99:2299,0,2344 15 101718950 rs74752435 T C 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.447;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=2.998;SOR=0.768 GT:AD:DP:GQ:PL 0/1:128,101:229:99:2711,0,3168 15 101910550 rs20543 G A 1909.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.646;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=6.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-1.86;SOR=1.148 GT:AD:DP:GQ:PL 0/1:88,83:171:99:1938,0,2357 15 102029597 rs1135910 C G 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.012;QD=11.36;ReadPosRankSum=-0.266;SOR=0.647 GT:AD:DP:GQ:PL 0/1:82,82:164:99:1892,0,1946 15 102029685 rs199543153 G GGC 3876.73 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.56;SOR=1.338 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3914,268,0 15 102029766 . GGCGCCCCCC G 40.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0;DP=28;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=8.15;ReadPosRankSum=-0.524;SOR=2.245 GT:AD:DP:GQ:PL 0/1:3,2:5:78:78,0,130 15 102185368 . TA T 74.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.31;ClippingRankSum=0;DP=95;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.96;ReadPosRankSum=-1.655;SOR=0.49 GT:AD:DP:GQ:PL 0/1:63,15:86:99:112,0,1527 15 102190382 rs62027585 G A 883.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=7.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-1.437;SOR=1.43 GT:AD:DP:GQ:PL 0/1:55,38:93:99:912,0,1442 15 102192548 rs2939587 A C 3015.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3044,291,0 15 102224341 rs12901450 G A 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.21;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.02;SOR=0.734 GT:AD:DP:GQ:PL 0/1:75,62:137:99:1407,0,1826 15 102264304 rs1143138 G C 2535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.746;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=3.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15;ReadPosRankSum=0.423;SOR=0.48 GT:AD:DP:GQ:PL 0/1:82,87:169:99:2564,0,2303 15 102264476 rs1143136 C A 3332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.252;SOR=0.631 GT:AD:DP:GQ:PL 0/1:130,131:261:99:3361,0,3566 16 103517 rs183360 A C 5835.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=28.75;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5864,608,0 16 105444 rs2541594 C T 2551.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2580,251,0 16 108585 rs216598 T C 5991.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6020,582,0 16 136888 rs743725 T C 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=7.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=0.061;SOR=1.386 GT:AD:DP:GQ:PL 0/1:63,53:116:99:1279,0,1592 16 138772 rs57321480 A AG 7004.73 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.26;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,188:188:99:7042,566,0 16 223706 rs2541640 A G 1906.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.69;QD=32.88;SOR=2.147 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1935,174,0 16 231109 rs150819141 C T 1875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-1.605;SOR=0.98 GT:AD:DP:GQ:PL 0/1:79,79:158:99:1904,0,1953 16 322934 rs9940585 C T 4761.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.578 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4790,456,0 16 324030 rs112344350 T TG 720.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.359;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=0.275;SOR=0.86 GT:AD:DP:GQ:PL 0/1:44,31:75:99:758,0,1164 16 324052 rs2685126 A G 2765.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=31.08;SOR=2.174 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2794,265,0 16 330661 . C CG 1545.73 PASS AC=2;AF=1;AN=2;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=49.86;SOR=2.093 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,31:31:99:1|1:330661_C_CG:1583,108,0 16 330678 rs368146102 G A 2229.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.82;SOR=2.221 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,56:56:99:1|1:330661_C_CG:2258,168,0 16 336660 rs11647490 G A 9971.77 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,322:322:99:10000,966,0 16 359953 rs2301522 A G 4104.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4133,413,0 16 396264 rs1805105 A G 6842.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6871,657,0 16 418429 rs11642334 A G 7414.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7443,726,0 16 419092 rs3830160 A G 6247.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6276,641,0 16 424277 rs3743887 G A 2576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.432;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=2.717;SOR=0.807 GT:AD:DP:GQ:PL 0/1:122,112:234:99:2605,0,2842 16 424403 rs11641325 C T 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.121;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=-0.878;SOR=0.436 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,72:132:99:0|1:424403_C_T:1830,0,1517 16 426432 rs2071915 T C 7480.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7509,711,0 16 427479 rs11248931 T C 10092.8 PASS AC=2;AF=1;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,357:357:99:10121,1069,0 16 427516 rs11649031 T C 9896.77 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,320:320:99:9925,959,0 16 427657 rs11641693 G A 6056.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6085,608,0 16 427784 rs11641742 G A 4609.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4638,453,0 16 427820 rs12922073 C T 4921.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4950,492,0 16 427866 rs12933709 T C 3378.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.774;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.47;ReadPosRankSum=-0.97;SOR=1.236 GT:AD:DP:GQ:PL 1/1:2,121:123:99:3407,319,0 16 449659 rs14293 G A 1449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.41;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=1.472;SOR=0.88 GT:AD:DP:GQ:PL 0/1:68,68:136:99:1478,0,1699 16 450309 rs5841 C T 2720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.131;SOR=0.661 GT:AD:DP:GQ:PL 0/1:101,114:215:99:2749,0,2390 16 476096 rs1883371 A G 4426.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=27.5;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4455,482,0 16 570454 rs11863276 T C 5920.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5949,561,0 16 570557 rs11537754 T C 6425.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6454,645,0 16 601632 rs3213574 T C 5789.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5818,597,0 16 602046 rs7196821 T C 4711.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4740,473,0 16 602595 rs9922777 G C 3152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.56;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=-1.131;SOR=0.692 GT:AD:DP:GQ:PL 0/1:99,107:206:99:3181,0,2513 16 603052 . G A 168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.96;ReadPosRankSum=-0.02;SOR=1.055 GT:AD:DP:GQ:PL 0/1:21,13:34:99:197,0,523 16 603471 rs11248937 A G 7288.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7317,736,0 16 613344 rs116903998 G A 4409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.629;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.951;SOR=0.833 GT:AD:DP:GQ:PL 0/1:185,192:377:99:4438,0,4023 16 615326 rs59985111 T C 2624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.08;ReadPosRankSum=2.694;SOR=0.804 GT:AD:DP:GQ:PL 0/1:75,99:174:99:2653,0,1945 16 624114 rs2071979 A G 2311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.11;ReadPosRankSum=-0.343;SOR=0.686 GT:AD:DP:GQ:PL 0/1:64,89:153:99:2340,0,1526 16 624713 rs4984669 C T 1459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=-1.015;SOR=0.892 GT:AD:DP:GQ:PL 0/1:50,58:108:99:1488,0,1317 16 632230 rs67976359 CG C 1295.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.877;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.25;ReadPosRankSum=-0.306;SOR=0.942 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,33:71:99:0|1:632225_T_C:1333,0,1519 16 632233 rs62030874 T C 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.4;ReadPosRankSum=-0.849;SOR=0.906 GT:AD:DP:GQ:PGT:PID:PL 0/1:39,36:75:99:0|1:632225_T_C:1333,0,1519 16 633125 rs1045277 T C 2063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=1.174;SOR=0.703 GT:AD:DP:GQ:PL 0/1:105,90:195:99:2092,0,2615 16 633353 rs710924 T C 3034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.39;ReadPosRankSum=1.357;SOR=0.64 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,80:165:99:0|1:633353_T_C:3063,0,4604 16 633354 rs710925 G A 3034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.835;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.73;ReadPosRankSum=1.648;SOR=0.604 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,78:162:99:0|1:633353_T_C:3063,0,4604 16 677629 rs2269557 T C 3007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=1.156;SOR=0.633 GT:AD:DP:GQ:PL 0/1:141,124:265:99:3036,0,3635 16 681280 rs4984905 G T 2972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=0.003;SOR=0.59 GT:AD:DP:GQ:PL 0/1:188,132:320:99:3001,0,4501 16 682566 rs2269561 T C 3115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.922;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=0.731;SOR=0.532 GT:AD:DP:GQ:PL 0/1:115,125:240:99:3144,0,2808 16 701656 rs11642546 C T 2007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=4.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=0.616;SOR=0.446 GT:AD:DP:GQ:PL 0/1:108,93:201:99:2036,0,2704 16 705360 rs3803697 T C 3985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=6.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-1.239;SOR=0.461 GT:AD:DP:GQ:PL 0/1:171,166:337:99:4014,0,4288 16 705844 rs8051645 T C 3822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.343;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.962;SOR=0.787 GT:AD:DP:GQ:PL 0/1:129,143:272:99:3851,0,3160 16 706534 rs28485323 G A 2825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.126;SOR=0.613 GT:AD:DP:GQ:PL 0/1:145,119:264:99:2854,0,3837 16 707748 rs36022186 C T 4017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.939;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.432;SOR=0.583 GT:AD:DP:GQ:PL 0/1:214,174:388:99:4046,0,5045 16 708275 rs45613635 C A 2705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.218;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=3.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-1.035;SOR=0.854 GT:AD:DP:GQ:PL 0/1:136,116:252:99:2734,0,3177 16 709001 rs4984906 C A 2446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=-0.78;SOR=0.617 GT:AD:DP:GQ:PL 0/1:149,112:261:99:2475,0,3663 16 711326 rs9932282 G C 3528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.691;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=-1.51;SOR=0.603 GT:AD:DP:GQ:PL 0/1:112,130:242:99:3557,0,2889 16 711582 rs8062685 C G 6318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.014;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.386;QD=19.62;ReadPosRankSum=-0.383;SOR=0.645 GT:AD:DP:GQ:PGT:PID:PL 0/1:157,165:322:99:0|1:711572_C_T:6347,0,6535 16 711712 rs3177415 C T 4319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DB;DP=385;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-1.406;SOR=0.751 GT:AD:DP:GQ:PL 0/1:196,187:383:99:4348,0,4674 16 711905 rs2301426 A G 3180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.889;SOR=0.826 GT:AD:DP:GQ:PL 0/1:112,126:238:99:3209,0,2880 16 715990 rs7190775 G A 4486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.525;ClippingRankSum=0;DB;DP=383;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=2.223;SOR=0.752 GT:AD:DP:GQ:PL 0/1:193,188:381:99:4515,0,4651 16 716798 rs12447392 C T 3995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.886;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.837;SOR=0.821 GT:AD:DP:GQ:PL 0/1:139,155:294:99:4024,0,3385 16 717523 rs3752493 G T 3932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=0.132;SOR=0.713 GT:AD:DP:GQ:PL 0/1:156,168:324:99:3961,0,3772 16 718514 rs7204542 C G 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=3.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.137;SOR=0.752 GT:AD:DP:GQ:PL 0/1:105,92:197:99:2393,0,2936 16 720986 rs1139897 G A 2754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0.285;SOR=0.657 GT:AD:DP:GQ:PL 0/1:182,129:311:99:2783,0,4422 16 721798 rs146789763 T TCCCCTG 1603.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=17.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.1;ReadPosRankSum=1.412;SOR=3.588 GT:AD:DP:GQ:PL 0/1:35,41:78:99:1641,0,1093 16 722331 rs3177338 C T 3548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.047;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-1.66;SOR=0.76 GT:AD:DP:GQ:PL 0/1:124,138:262:99:3577,0,3175 16 722548 rs1128550 A G 2689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.304;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.94;ReadPosRankSum=0.162;SOR=0.519 GT:AD:DP:GQ:PL 0/1:84,96:180:99:2718,0,2194 16 732287 rs3216838 GC G 4074.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.244;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=2.312;QD=16.63;ReadPosRankSum=-0.416;SOR=0.832 GT:AD:DP:GQ:PL 0/1:114,131:245:99:4112,0,3518 16 735679 rs139256616 G A 2807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.35;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=5.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-1.091;SOR=0.451 GT:AD:DP:GQ:PL 0/1:147,116:263:99:2836,0,3757 16 735794 rs11640115 A G 3379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.726;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=0.197;SOR=0.775 GT:AD:DP:GQ:PL 0/1:119,122:241:99:3408,0,3164 16 735921 rs763053 T C 3447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.129;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=1.357;SOR=0.871 GT:AD:DP:GQ:PL 0/1:140,120:260:99:3476,0,3663 16 746884 rs4984683 A C 3170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.526;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0;QD=13.91;ReadPosRankSum=-0.491;SOR=0.614 GT:AD:DP:GQ:PL 0/1:105,123:228:99:3199,0,2532 16 746914 rs4984915 G A 3182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.073;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0;QD=12.89;ReadPosRankSum=0.682;SOR=0.741 GT:AD:DP:GQ:PL 0/1:123,124:247:99:3211,0,2993 16 771286 rs11540049 C T 2448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.551;SOR=0.704 GT:AD:DP:GQ:PL 0/1:137,105:242:99:2477,0,3550 16 772141 rs11867009 G C 3145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.195;SOR=0.831 GT:AD:DP:GQ:PL 0/1:162,132:294:99:3174,0,4266 16 774520 rs4984921 C T 3027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.637;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=2.575;SOR=0.591 GT:AD:DP:GQ:PL 0/1:142,126:268:99:3056,0,3908 16 774692 rs2071950 A G 2963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.774;SOR=0.739 GT:AD:DP:GQ:PL 0/1:142,118:260:99:2992,0,3709 16 775947 rs12446058 G C 3666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.678;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.89;ReadPosRankSum=-0.264;SOR=0.628 GT:AD:DP:GQ:PGT:PID:PL 0/1:109,96:205:99:0|1:775947_G_C:3695,0,9358 16 775954 rs12448311 C A 3863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.67;ReadPosRankSum=-1.744;SOR=0.69 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,100:207:99:0|1:775947_G_C:3892,0,9543 16 775955 rs12448312 C A 3830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.51;ReadPosRankSum=-0.838;SOR=0.701 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,97:207:99:0|1:775947_G_C:3859,0,9524 16 777627 rs7188886 C T 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.917;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-0.834;SOR=0.648 GT:AD:DP:GQ:PL 0/1:30,43:73:99:1018,0,602 16 813650 rs3765319 G A 1183.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=0.272;SOR=0.755 GT:AD:DP:GQ:PL 0/1:47,53:100:99:1212,0,1159 16 815628 rs1737340 A G 7061.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7090,731,0 16 817016 rs145287724 AGCCAGGGAGTCCCTG A 9817.73 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=44.42;SOR=1.375 GT:AD:DP:GQ:PL 1/1:0,221:221:99:9855,670,0 16 818559 rs1135210 A G 7883.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7912,757,0 16 839084 rs2277901 A C 8421.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8450,834,0 16 839262 rs569951 A G 7435.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7464,710,0 16 840378 rs3765263 A G 5919.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.45;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5948,531,0 16 840409 rs3765264 T C 5381.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.88;SOR=1.097 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5410,451,0 16 841966 rs742319 C T 6694.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6723,639,0 16 842450 rs2277897 C T 9315.77 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,304:304:99:9344,907,0 16 842706 rs742320 G A 5329.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5358,528,0 16 842826 rs74908091 A G 3893.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3922,396,0 16 843084 rs3833825 C CGGGTG 1675.73 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.29;SOR=5.838 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1713,116,0 16 847743 rs2294451 C T 4842.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=3.334 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4871,449,0 16 855717 rs1005190 C G 7124.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7153,687,0 16 942989 rs11864203 G C 1340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.431;SOR=0.783 GT:AD:DP:GQ:PL 0/1:71,61:132:99:1369,0,1693 16 961051 rs2277893 C T 2348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.39;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.141;SOR=0.814 GT:AD:DP:GQ:PL 0/1:81,99:180:99:2377,0,1949 16 1004554 rs3751667 C T 2389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.884;SOR=0.689 GT:AD:DP:GQ:PL 0/1:95,108:203:99:2418,0,2145 16 1021000 rs36202798 CCGGAGGCCCCGCCCATTCT C 1000.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.94;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.427;QD=11.64;ReadPosRankSum=-0.802;SOR=0.94 GT:AD:DP:GQ:PL 0/1:57,29:86:99:1038,0,10197 16 1034834 rs237674 T C 6654.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6683,670,0 16 1035077 rs11542179 C T 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.999;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=4.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=1.214;SOR=1.084 GT:AD:DP:GQ:PL 0/1:74,58:132:99:1449,0,1823 16 1129010 rs4988483 C A 3860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.65;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-1.026;SOR=0.9 GT:AD:DP:GQ:PL 0/1:123,159:282:99:3889,0,3077 16 1129912 rs642249 A G 10993.8 PASS AC=2;AF=1;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,359:359:99:11022,1077,0 16 1252369 rs61734410 C T 2422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.462;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.633;SOR=0.706 GT:AD:DP:GQ:PL 0/1:124,101:225:99:2451,0,3101 16 1254369 rs3751664 C T 2116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.928;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-1.318;SOR=0.741 GT:AD:DP:GQ:PL 0/1:128,87:215:99:2145,0,3248 16 1255285 rs57600685 C A 2145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.339;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=-1.448;SOR=0.806 GT:AD:DP:GQ:PL 0/1:60,92:152:99:2174,0,1397 16 1260021 rs8056494 G T 3062.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=1.049 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3091,327,0 16 1260481 rs8063574 T C 5547.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.44;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5576,512,0 16 1260767 rs2738897 G A 4783.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4812,485,0 16 1261219 rs2753326 A G 6943.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.09;SOR=0.92 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,154:154:99:1|1:1261219_A_G:6972,473,0 16 1261222 rs2753325 A G 6944.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=0.948 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,156:156:99:1|1:1261219_A_G:6973,473,0 16 1261282 rs4984637 T C 6363.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6392,631,0 16 1265600 rs2235634 G A 1355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.003;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=1.071;SOR=0.652 GT:AD:DP:GQ:PL 0/1:80,61:141:99:1384,0,1951 16 1268494 rs2745136 C T 8558.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8587,850,0 16 1269029 rs2738893 T C 6565.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6594,667,0 16 1270162 rs1054645 G A 8608.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8637,859,0 16 1270349 rs4247094 T C 10556.8 PASS AC=2;AF=1;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,353:353:99:10585,1058,0 16 1271890 rs1004041 G T 6515.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6544,629,0 16 1272038 rs11248860 G A 9021.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9050,893,0 16 1272684 rs4984638 C G 3023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.332;SOR=0.561 GT:AD:DP:GQ:PL 0/1:110,119:229:99:3052,0,2805 16 1272865 rs4984639 G A 6287.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6316,654,0 16 1273490 rs760357 C T 4108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-0.447;SOR=0.705 GT:AD:DP:GQ:PL 0/1:149,172:321:99:4137,0,3602 16 1278744 rs62012862 C T 3845.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.873;MLEAC=2;MLEAF=1;MQ=47.25;MQRankSum=1.872;QD=36.28;ReadPosRankSum=-1.4;SOR=0.358 GT:AD:DP:GQ:PGT:PID:PL 1/1:5,101:106:97:1|1:1278744_C_T:3874,97,0 16 1278767 rs201725275 C T 3329.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.03;MQRankSum=1.548;QD=41.62;ReadPosRankSum=-0.482;SOR=0.632 GT:AD:DP:GQ:PGT:PID:PL 1/1:5,75:80:43:1|1:1278744_C_T:3358,43,0 16 1278806 rs199504258 G A 1408.79 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.481;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.05;MQRankSum=3.18;QD=33.54;ReadPosRankSum=1.49;SOR=4.615 GT:AD:DP:GQ:PL 1/1:3,39:42:23:1437,23,0 16 1278888 rs200768967 G C 133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40;MQRankSum=-0;QD=33.44;ReadPosRankSum=0.319;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 0/1:1,3:4:72:0|1:1278840_G_A:162,0,72 16 1278902 rs201834172 G T 49.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40;MQRankSum=-0;QD=12.44;ReadPosRankSum=0.674;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,2:4:78:0|1:1278840_G_A:78,0,78 16 1278906 rs199812972 T G 49.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40;MQRankSum=-0;QD=12.44;ReadPosRankSum=-0;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,2:4:78:0|1:1278840_G_A:78,0,78 16 1278916 . C T 49.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0;ClippingRankSum=-0;DP=4;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40;MQRankSum=-0;QD=12.44;ReadPosRankSum=-0;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,2:4:78:0|1:1278840_G_A:78,0,78 16 1278950 rs201636233 C T 84.28 PASS AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40;QD=28.09;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:112,9,0 16 1279382 . C T 168.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.717;ClippingRankSum=0;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.01;MQRankSum=0.315;QD=7.34;ReadPosRankSum=0.216;SOR=0.2 GT:AD:DP:GQ:PL 0/1:16,7:23:99:197,0,473 16 1279438 rs202041848 C T 1402.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.99;MQRankSum=1.67;QD=29.85;ReadPosRankSum=-0.569;SOR=4.849 GT:AD:DP:GQ:PL 1/1:3,44:47:45:1431,45,0 16 1279555 rs148897236 C T 9421.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.65;QD=48.57;SOR=2.206 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,194:194:99:1|1:1279537_C_G:9450,632,0 16 1279574 rs199887053 C G 12076.8 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.87;QD=45.23;SOR=1.738 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,267:267:99:1|1:1279537_C_G:12105,810,0 16 1279584 rs111992451 T C 13216.8 PASS AC=2;AF=1;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.57;QD=42.77;SOR=1.446 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,309:309:99:1|1:1279537_C_G:13245,933,0 16 1279623 rs72633259 G A 5303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.998;ClippingRankSum=0;DB;DP=465;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.51;MQRankSum=-4.487;QD=11.43;ReadPosRankSum=-1.444;SOR=0.692 GT:AD:DP:GQ:PL 0/1:231,233:464:99:5332,0,5090 16 1279704 rs202107419 A G 16629.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0;DB;DP=508;ExcessHet=3.0103;FS=28.18;MLEAC=1;MLEAF=0.5;MQ=49.87;MQRankSum=9.02;QD=32.74;ReadPosRankSum=3.384;SOR=0.913 GT:AD:DP:GQ:PGT:PID:PL 0/1:96,412:508:99:0|1:1279704_A_G:16658,0,2875 16 1279710 rs200630968 G A 16208.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.31;ClippingRankSum=0;DB;DP=490;ExcessHet=3.0103;FS=27.194;MLEAC=1;MLEAF=0.5;MQ=49.57;MQRankSum=9.03;QD=33.08;ReadPosRankSum=0.32;SOR=1.081 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,392:490:99:0|1:1279704_A_G:16237,0,2968 16 1279714 rs192643610 A G 15877.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.44;ClippingRankSum=0;DB;DP=476;ExcessHet=3.0103;FS=29.506;MLEAC=1;MLEAF=0.5;MQ=49.37;MQRankSum=8.99;QD=33.36;ReadPosRankSum=-1.837;SOR=1.092 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,377:476:99:0|1:1279704_A_G:15906,0,2995 16 1279717 rs201728868 C T 15497.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.641;ClippingRankSum=0;DB;DP=472;ExcessHet=3.0103;FS=29.506;MLEAC=1;MLEAF=0.5;MQ=49.36;MQRankSum=8.99;QD=32.83;ReadPosRankSum=-3.636;SOR=1.103 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,373:472:99:0|1:1279704_A_G:15526,0,3022 16 1279732 rs201836020 C A 12697.8 SNP_FS_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.158;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=74.856;MLEAC=1;MLEAF=0.5;MQ=47.12;MQRankSum=7.506;QD=31.82;ReadPosRankSum=-8.299;SOR=1.604 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,294:399:99:0|1:1279704_A_G:12726,0,3342 16 1279944 rs369234945 A G 75.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.051;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=24.481;MLEAC=1;MLEAF=0.5;MQ=30.1;MQRankSum=1.876;QD=1.08;ReadPosRankSum=-1.306;SOR=4.167 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,7:70:99:0|1:1279944_A_G:104,0,3132 16 1279945 rs371345739 T C 75.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.66;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=24.481;MLEAC=1;MLEAF=0.5;MQ=30.1;MQRankSum=1.876;QD=1.08;ReadPosRankSum=-1.484;SOR=4.167 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,7:70:99:0|1:1279944_A_G:104,0,3132 16 1290947 rs371929937 A G 805.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.473;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=19.319;MLEAC=1;MLEAF=0.5;MQ=33.4;MQRankSum=-5.844;QD=16.12;ReadPosRankSum=-0.08;SOR=0.039 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,22:50:99:0|1:1290947_A_G:834,0,1912 16 1290948 rs376632253 T C 805.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.703;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=19.319;MLEAC=1;MLEAF=0.5;MQ=33.4;MQRankSum=-5.844;QD=16.12;ReadPosRankSum=-0.205;SOR=0.039 GT:AD:DP:GQ:PGT:PID:PL 0/1:28,22:50:99:0|1:1290947_A_G:834,0,1912 16 1290983 . G C 37.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.049;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=5.065;MLEAC=1;MLEAF=0.5;MQ=33.55;MQRankSum=-1.932;QD=0.61;ReadPosRankSum=1.143;SOR=2.348 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,5:62:66:0|1:1290983_G_C:66,0,3067 16 1290984 . C G 37.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0;DP=63;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.5;MQ=33.45;MQRankSum=-1.962;QD=0.6;ReadPosRankSum=-0.017;SOR=1.214 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,6:63:66:0|1:1290983_G_C:66,0,3067 16 1291160 rs141519544 G T 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0;DB;DP=516;ExcessHet=3.0103;FS=10.892;MLEAC=1;MLEAF=0.5;MQ=51.87;MQRankSum=-10.449;QD=2.75;ReadPosRankSum=7.371;SOR=0.573 GT:AD:DP:GQ:PGT:PID:PL 0/1:445,69:514:99:0|1:1291160_G_T:1442,0,19249 16 1291175 rs146223687 G A 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.055;ClippingRankSum=0;DB;DP=598;ExcessHet=3.0103;FS=6.007;MLEAC=1;MLEAF=0.5;MQ=53.04;MQRankSum=-11.242;QD=2.05;ReadPosRankSum=1.817;SOR=0.703 GT:AD:DP:GQ:PGT:PID:PL 0/1:528,68:596:99:0|1:1291160_G_T:1251,0,22172 16 1291178 rs112944038 T C 1132.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.002;ClippingRankSum=0;DB;DP=598;ExcessHet=3.0103;FS=7.885;MLEAC=1;MLEAF=0.5;MQ=53.19;MQRankSum=-11.126;QD=1.9;ReadPosRankSum=0.37;SOR=0.721 GT:AD:DP:GQ:PGT:PID:PL 0/1:530,66:596:99:0|1:1291160_G_T:1161,0,22851 16 1291182 rs112531166 C T 982.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.837;ClippingRankSum=0;DB;DP=621;ExcessHet=3.0103;FS=6.539;MLEAC=1;MLEAF=0.5;MQ=53.56;MQRankSum=-11.27;QD=1.59;ReadPosRankSum=-1.169;SOR=0.842 GT:AD:DP:GQ:PGT:PID:PL 0/1:555,64:619:99:0|1:1291160_G_T:1011,0,23176 16 1291188 rs17434400 C T 14402.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.475;ClippingRankSum=0;DB;DP=630;ExcessHet=3.0103;FS=10.997;MLEAC=1;MLEAF=0.5;MQ=53.97;MQRankSum=10.942;QD=22.93;ReadPosRankSum=3.452;SOR=0.798 GT:AD:DP:GQ:PL 0/1:58,570:628:99:14431,0,771 16 1291308 rs201568970 A G 4647.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.623;ClippingRankSum=0;DB;DP=726;ExcessHet=3.0103;FS=9.464;MLEAC=1;MLEAF=0.5;MQ=50.58;MQRankSum=-15.682;QD=6.42;ReadPosRankSum=-3.112;SOR=1.493 GT:AD:DP:GQ:PGT:PID:PL 0/1:574,150:724:99:0|1:1291308_A_G:4676,0,25297 16 1291318 rs151324823 G C 6446.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.467;ClippingRankSum=0;DB;DP=798;ExcessHet=3.0103;FS=7.374;MLEAC=1;MLEAF=0.5;MQ=49.54;MQRankSum=-16.783;QD=8.1;ReadPosRankSum=-1.451;SOR=1.297 GT:AD:DP:GQ:PGT:PID:PL 0/1:606,190:796:99:0|1:1291308_A_G:6475,0,26912 16 1291337 rs200843295 G A 8045.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.675;ClippingRankSum=0;DB;DP=848;ExcessHet=3.0103;FS=2.828;MLEAC=1;MLEAF=0.5;MQ=46.88;MQRankSum=-16.113;QD=9.51;ReadPosRankSum=1.482;SOR=0.944 GT:AD:DP:GQ:PGT:PID:PL 0/1:610,236:846:99:0|1:1291308_A_G:8074,0,27043 16 1291454 rs201351744 G A 2663.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.058;ClippingRankSum=0;DB;DP=555;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.5;MQ=38.17;MQRankSum=-5.931;QD=4.8;ReadPosRankSum=-1.533;SOR=0.77 GT:AD:DP:GQ:PL 0/1:401,154:555:99:2692,0,11500 16 1291591 rs201278990 G C 292.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.952;ClippingRankSum=0;DB;DP=574;ExcessHet=3.0103;FS=19.187;MLEAC=1;MLEAF=0.5;MQ=44.86;MQRankSum=-2.983;QD=0.51;ReadPosRankSum=-6.999;SOR=2.784 GT:AD:DP:GQ:PGT:PID:PL 0/1:531,43:574:99:0|1:1291591_G_C:321,0,22136 16 1291597 rs144979264 C G 14016.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.782;ClippingRankSum=0;DB;DP=589;ExcessHet=3.0103;FS=17.264;MLEAC=1;MLEAF=0.5;MQ=45;MQRankSum=3.047;QD=23.8;ReadPosRankSum=7.263;SOR=0.079 GT:AD:DP:GQ:PL 0/1:52,537:589:99:14045,0,657 16 1291598 rs200334042 G A 643.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.953;ClippingRankSum=0;DB;DP=591;ExcessHet=3.0103;FS=17.264;MLEAC=1;MLEAF=0.5;MQ=45.02;MQRankSum=-3.064;QD=1.09;ReadPosRankSum=-7.021;SOR=2.577 GT:AD:DP:GQ:PGT:PID:PL 0/1:539,52:591:99:0|1:1291591_G_C:672,0,22664 16 1291608 rs201820654 A G 1228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.313;ClippingRankSum=0;DB;DP=613;ExcessHet=3.0103;FS=17.839;MLEAC=1;MLEAF=0.5;MQ=45.12;MQRankSum=-3.682;QD=2;ReadPosRankSum=-6.224;SOR=2.493 GT:AD:DP:GQ:PGT:PID:PL 0/1:550,63:613:99:0|1:1291591_G_C:1257,0,23262 16 1291623 . C T 2306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.113;ClippingRankSum=0;DP=669;ExcessHet=3.0103;FS=21.579;MLEAC=1;MLEAF=0.5;MQ=45.29;MQRankSum=-4.762;QD=3.45;ReadPosRankSum=-4.889;SOR=2.51 GT:AD:DP:GQ:PGT:PID:PL 0/1:575,94:669:99:0|1:1291591_G_C:2335,0,24166 16 1291624 . C G 2352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=10.413;ClippingRankSum=0;DP=670;ExcessHet=3.0103;FS=23.767;MLEAC=1;MLEAF=0.5;MQ=45.36;MQRankSum=-4.912;QD=3.51;ReadPosRankSum=-4.863;SOR=2.45 GT:AD:DP:GQ:PGT:PID:PL 0/1:574,96:670:99:0|1:1291591_G_C:2381,0,24098 16 1291639 rs201223167 A G 3378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.98;ClippingRankSum=0;DB;DP=728;ExcessHet=3.0103;FS=34.102;MLEAC=1;MLEAF=0.5;MQ=45.67;MQRankSum=-6.082;QD=4.64;ReadPosRankSum=-3.291;SOR=2.61 GT:AD:DP:GQ:PGT:PID:PL 0/1:593,135:728:99:0|1:1291591_G_C:3407,0,24082 16 1291717 rs202230226 T TG 2381.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.209;ClippingRankSum=0;DB;DP=357;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.5;MQ=43.7;MQRankSum=-4.634;QD=6.98;ReadPosRankSum=4.007;SOR=0.603 GT:AD:DP:GQ:PL 0/1:244,97:341:99:2419,0,7730 16 1291831 rs202156919 G C 2547.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-8.873;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.5;MQ=38.57;MQRankSum=-1.62;QD=19.6;ReadPosRankSum=0.965;SOR=1.733 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,67:130:99:0|1:1291831_G_C:2576,0,2450 16 1291850 rs200171211 T C 2384.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.317;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=6.13;MLEAC=1;MLEAF=0.5;MQ=38.54;MQRankSum=-1.873;QD=19.71;ReadPosRankSum=1.588;SOR=2.392 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,61:121:99:0|1:1291831_G_C:2413,0,2308 16 1291941 rs201280504 G A 435.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.839;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.73;MQRankSum=-0.62;QD=13.21;ReadPosRankSum=-0.798;SOR=0.859 GT:AD:DP:GQ:PL 0/1:18,15:33:99:464,0,655 16 1291972 rs202246813 C G 94.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.633;ClippingRankSum=0;DB;DP=19;ExcessHet=3.0103;FS=7.489;MLEAC=1;MLEAF=0.5;MQ=39.21;MQRankSum=1.626;QD=4.99;ReadPosRankSum=2.253;SOR=0.045 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,4:19:99:0|1:1291972_C_G:123,0,589 16 1291975 rs200303851 G A 136.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.515;ClippingRankSum=0;DB;DP=17;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.5;MQ=39.24;MQRankSum=1.074;QD=8.05;ReadPosRankSum=1.055;SOR=0.124 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,5:17:99:0|1:1291972_C_G:165,0,586 16 1291985 . A C 148.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.881;ClippingRankSum=0;DP=16;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.5;MQ=39.25;MQRankSum=0.98;QD=9.3;ReadPosRankSum=1.417;SOR=0.148 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,5:16:99:0|1:1291972_C_G:177,0,447 16 1291989 rs201192435 C A 148.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.471;ClippingRankSum=-0;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.5;MQ=39.29;MQRankSum=0.599;QD=10.63;ReadPosRankSum=1.378;SOR=0.223 GT:AD:DP:GQ:PGT:PID:PL 0/1:9,5:14:99:0|1:1291972_C_G:177,0,447 16 1292003 rs199639987 C G 363.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.38;QD=45.47;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,8:8:27:1|1:1292003_C_G:392,27,0 16 1292085 rs201539350 C T 36.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=6.337;MLEAC=1;MLEAF=0.5;MQ=38.93;MQRankSum=-2.295;QD=0.65;ReadPosRankSum=0.754;SOR=0.019 GT:AD:DP:GQ:PL 0/1:50,7:57:65:65,0,1805 16 1292124 rs144701102 G A 143.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=9.312;MLEAC=1;MLEAF=0.5;MQ=43.11;MQRankSum=-2.189;QD=1.31;ReadPosRankSum=0.446;SOR=2.808 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,11:110:99:0|1:1292124_G_A:172,0,4340 16 1292147 rs145402040 G A 336.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.156;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=23.399;MLEAC=1;MLEAF=0.5;MQ=48.3;MQRankSum=-4.311;QD=1.97;ReadPosRankSum=-1.212;SOR=3.484 GT:AD:DP:GQ:PGT:PID:PL 0/1:150,21:171:99:0|1:1292124_G_A:365,0,5484 16 1292254 rs1060314 T G 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=4.767;MLEAC=1;MLEAF=0.5;MQ=58.27;MQRankSum=-4.989;QD=8.17;ReadPosRankSum=2.293;SOR=0.476 GT:AD:DP:GQ:PGT:PID:PL 0/1:279,93:372:99:0|1:1292254_T_G:3068,0,14344 16 1292257 rs17135220 G T 3033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.757;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=4.748;MLEAC=1;MLEAF=0.5;MQ=58.29;MQRankSum=-4.997;QD=8.05;ReadPosRankSum=2.293;SOR=0.473 GT:AD:DP:GQ:PGT:PID:PL 0/1:283,94:377:99:0|1:1292254_T_G:3062,0,14387 16 1306346 rs3865205 C G 3863.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.658;ClippingRankSum=0;DB;DP=433;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.19;MQRankSum=-17.993;QD=8.94;ReadPosRankSum=-3.988;SOR=0.769 GT:AD:DP:GQ:PGT:PID:PL 0/1:316,116:432:99:0|1:1306346_C_G:3892,0,13441 16 1306347 rs2005937 G C 3945.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.782;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.21;MQRankSum=-17.963;QD=9.15;ReadPosRankSum=-3.558;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 0/1:316,115:431:99:0|1:1306346_C_G:3974,0,13435 16 1306355 rs1800984 T C 3740.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.264;ClippingRankSum=0;DB;DP=409;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.47;MQRankSum=-16.13;QD=9.17;ReadPosRankSum=-2.898;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:297,111:408:99:0|1:1306346_C_G:3769,0,12991 16 1306642 rs61739908 C T 6363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0;DB;DP=570;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.51;MQRankSum=3.687;QD=11.22;ReadPosRankSum=0.511;SOR=0.652 GT:AD:DP:GQ:PL 0/1:301,266:567:99:6392,0,7832 16 1306671 rs1141966 G A 10511.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.254;ClippingRankSum=0;DB;DP=553;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=2.971;QD=19.11;ReadPosRankSum=-0.851;SOR=0.569 GT:AD:DP:GQ:PL 0/1:271,279:550:99:10540,0,10385 16 1306681 rs1141967 G A 10331.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DB;DP=561;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=-4.573;QD=19.2;ReadPosRankSum=1.087;SOR=0.822 GT:AD:DP:GQ:PL 0/1:265,273:558:99:10360,0,9960 16 1306802 rs2401930 A G 2816.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.952;ClippingRankSum=0;DB;DP=690;ExcessHet=3.0103;FS=32.041;MLEAC=1;MLEAF=0.5;MQ=54.02;MQRankSum=-15.243;QD=4.08;ReadPosRankSum=-2.168;SOR=3.153 GT:AD:DP:GQ:PGT:PID:PL 0/1:583,107:690:99:0|1:1306802_A_G:2845,0,23561 16 1306817 rs3993983 G A 3754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.701;ClippingRankSum=0;DB;DP=722;ExcessHet=3.0103;FS=27.56;MLEAC=1;MLEAF=0.5;MQ=54.18;MQRankSum=-12.224;QD=5.2;ReadPosRankSum=-4.289;SOR=2.498 GT:AD:DP:GQ:PGT:PID:PL 0/1:580,142:722:99:0|1:1306802_A_G:3783,0,23379 16 1306873 rs113333718 G A 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.879;ClippingRankSum=0;DB;DP=873;ExcessHet=3.0103;FS=4.748;MLEAC=1;MLEAF=0.5;MQ=55.85;MQRankSum=-2.727;QD=2.04;ReadPosRankSum=-1.293;SOR=1.167 GT:AD:DP:GQ:PL 0/1:731,142:873:99:1805,0,19615 16 1306918 rs74470113 C T 16577.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.868;ClippingRankSum=0;DB;DP=937;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=58.3;MQRankSum=-14.328;QD=17.69;ReadPosRankSum=6.149;SOR=0.597 GT:AD:DP:GQ:PGT:PID:PL 0/1:511,426:937:99:0|1:1306918_C_T:16606,0,20424 16 1306921 rs78324915 G A 16631.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.87;ClippingRankSum=0;DB;DP=952;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=58.24;MQRankSum=-14.587;QD=17.47;ReadPosRankSum=6.523;SOR=0.607 GT:AD:DP:GQ:PGT:PID:PL 0/1:519,433:952:99:0|1:1306918_C_T:16660,0,20711 16 1306927 rs79472859 C T 16660.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.957;ClippingRankSum=0;DB;DP=947;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=58.16;MQRankSum=-14.598;QD=17.59;ReadPosRankSum=6.826;SOR=0.641 GT:AD:DP:GQ:PGT:PID:PL 0/1:511,436:947:99:0|1:1306918_C_T:16689,0,20077 16 1306971 rs72775466 A G 13430.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DB;DP=830;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.5;MQ=58.24;MQRankSum=-13.636;QD=16.18;ReadPosRankSum=2.796;SOR=0.763 GT:AD:DP:GQ:PGT:PID:PL 0/1:473,357:830:99:0|1:1306971_A_G:13459,0,19177 16 1306973 rs79313952 A G 13403.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DB;DP=832;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=58.29;MQRankSum=-13.633;QD=16.11;ReadPosRankSum=2.479;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 0/1:480,352:832:99:0|1:1306971_A_G:13432,0,19444 16 1306986 rs72775467 C T 11876.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=806;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=58.37;MQRankSum=-14.069;QD=14.74;ReadPosRankSum=-0.585;SOR=0.791 GT:AD:DP:GQ:PGT:PID:PL 0/1:490,316:806:99:0|1:1306971_A_G:11905,0,19095 16 1307050 . C T 1174.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.577;ClippingRankSum=0;DP=526;ExcessHet=3.0103;FS=24.191;MLEAC=1;MLEAF=0.5;MQ=58.32;MQRankSum=-20.453;QD=2.23;ReadPosRankSum=-7.922;SOR=3.163 GT:AD:DP:GQ:PGT:PID:PL 0/1:459,67:526:99:0|1:1307050_C_T:1203,0,21368 16 1307060 rs201543585 A G 699.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.231;ClippingRankSum=0;DB;DP=473;ExcessHet=3.0103;FS=27.079;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=-21.687;QD=1.48;ReadPosRankSum=-7.891;SOR=3.695 GT:AD:DP:GQ:PGT:PID:PL 0/1:426,47:473:99:0|1:1307050_C_T:728,0,20733 16 1364281 rs4984806 T C 4840.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4869,452,0 16 1364365 rs4610 A G 2147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-1.577;SOR=0.737 GT:AD:DP:GQ:PL 0/1:103,95:198:99:2176,0,2502 16 1370303 rs909916 T C 6752.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.85;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,154:154:99:1|1:1370303_T_C:6781,469,0 16 1370597 rs4017786 G C 9879.77 PASS AC=2;AF=1;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9908,924,0 16 1370614 rs8063770 C G 10155.8 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=30.5;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,333:333:99:10184,997,0 16 1370630 rs8043720 A G 10393.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.63;QD=30.75;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,338:338:99:10422,1014,0 16 1388888 rs7197416 C T 4123.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4152,395,0 16 1388909 rs77633104 C T 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.157;SOR=0.727 GT:AD:DP:GQ:PL 0/1:81,92:173:99:2357,0,2071 16 1389153 rs7202563 C A 8284.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=3.201;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.59;ReadPosRankSum=2.713;SOR=0.374 GT:AD:DP:GQ:PL 1/1:1,279:280:99:8313,828,0 16 1391871 rs2369699 C G 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.581;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=3.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=0.806;SOR=0.985 GT:AD:DP:GQ:PL 0/1:82,88:170:99:2369,0,2051 16 1393020 rs2235632 G A 1482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.98;ReadPosRankSum=1.314;SOR=0.944 GT:AD:DP:GQ:PL 0/1:42,57:99:99:1511,0,1086 16 1394507 rs1132356 A C 6521.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.29;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6550,606,0 16 1397815 rs1132358 C T 2260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=13.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-2.194;SOR=0.284 GT:AD:DP:GQ:PL 0/1:131,98:229:99:2289,0,3488 16 1398077 rs34766513 C CCT 14300.7 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.43;QD=44.55;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,321:321:99:14338,974,0 16 1419947 rs11248874 A G 5687.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=1.147 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5716,534,0 16 1464636 rs111437424 A C 3477.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.38;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3506,377,0 16 1484392 rs12598718 G C 3746.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.02;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3775,351,0 16 1484455 rs61743495 T C 2301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.005;SOR=1.025 GT:AD:DP:GQ:PL 0/1:85,93:178:99:2330,0,2136 16 1484473 rs7192331 A G 6954.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.99;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,188:188:99:6983,570,0 16 1487975 rs4984839 A G 2380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.177;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.5;ReadPosRankSum=2.001;SOR=0.644 GT:AD:DP:GQ:PL 0/1:170,110:280:99:2409,0,4162 16 1488039 rs4984841 C T 4041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.37;ReadPosRankSum=-1.187;SOR=0.582 GT:AD:DP:GQ:PGT:PID:PL 0/1:151,112:263:99:0|1:1488015_A_G:4070,0,6869 16 1488141 rs12925639 C T 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=4.164;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=1.001;SOR=0.682 GT:AD:DP:GQ:PL 0/1:142,118:260:99:2715,0,3631 16 1488646 rs8054054 A G 1917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.013;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=-1.701;SOR=0.909 GT:AD:DP:GQ:PL 0/1:69,75:144:99:1946,0,1520 16 1488797 rs58293579 G A 1443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.719;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.76;ReadPosRankSum=0.481;SOR=0.71 GT:AD:DP:GQ:PL 0/1:105,81:186:99:1472,0,1825 16 1503879 rs2235579 T A 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=4.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-0.107;SOR=0.945 GT:AD:DP:GQ:PL 0/1:58,74:132:99:1779,0,1338 16 1509123 rs12923538 G A 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-0.248;SOR=0.664 GT:AD:DP:GQ:PL 0/1:59,56:115:99:1306,0,1594 16 1510538 rs35280276 A G 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.693;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.5;ReadPosRankSum=0.793;SOR=0.842 GT:AD:DP:GQ:PL 0/1:25,45:70:99:1183,0,536 16 1524850 rs3751884 A G 2970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=1.435;SOR=0.651 GT:AD:DP:GQ:PL 0/1:92,120:214:99:2999,0,2177 16 1536323 rs2667671 A G 3271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=3.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.1;ReadPosRankSum=0.25;SOR=0.806 GT:AD:DP:GQ:PL 0/1:108,124:232:99:3300,0,2870 16 1536380 rs2667672 G T 3308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.544;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-1.733;SOR=0.655 GT:AD:DP:GQ:PL 0/1:131,144:275:99:3337,0,3263 16 1536499 rs2745097 G T 2978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=0.058;SOR=0.73 GT:AD:DP:GQ:PL 0/1:104,118:222:99:3007,0,2706 16 1536535 rs2745098 C T 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.487;SOR=0.591 GT:AD:DP:GQ:PL 0/1:94,106:200:99:2535,0,2359 16 1537455 rs2667673 T C 3090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.558;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-1.901;SOR=0.907 GT:AD:DP:GQ:PL 0/1:129,115:244:99:3119,0,3196 16 1537874 rs7202502 G A 2159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.88;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=4.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=1.394;SOR=1.005 GT:AD:DP:GQ:PL 0/1:126,93:219:99:2188,0,3442 16 1538363 rs1040499 C A 2803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.139;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.333;SOR=0.825 GT:AD:DP:GQ:PL 0/1:103,117:220:99:2832,0,2328 16 1545448 rs2235624 A G 4373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-2.038;SOR=0.792 GT:AD:DP:GQ:PL 0/1:169,189:358:99:4402,0,4088 16 1547477 rs2745108 T C 3369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.848;SOR=0.684 GT:AD:DP:GQ:PL 0/1:172,147:319:99:3398,0,4246 16 1549343 rs11344586 GC G 1748.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.813;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=1.14;SOR=0.682 GT:AD:DP:GQ:PL 0/1:70,58:128:99:1786,0,2221 16 1550113 rs118041797 G A 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=3.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.737;SOR=0.489 GT:AD:DP:GQ:PL 0/1:127,113:240:99:2539,0,3108 16 1555589 rs2248128 A G 2834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=1.384;SOR=0.57 GT:AD:DP:GQ:PL 0/1:91,105:196:99:2863,0,2330 16 1559838 rs3180228 T C 1713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.629;SOR=0.477 GT:AD:DP:GQ:PL 0/1:73,72:145:99:1742,0,1819 16 1573810 rs2745176 A G 8262.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8291,841,0 16 1584446 rs1057612 G C 2642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.513;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=-0.667;SOR=0.749 GT:AD:DP:GQ:PL 0/1:172,113:285:99:2671,0,4321 16 1614097 rs8048410 A G 2342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-1.706;SOR=0.793 GT:AD:DP:GQ:PL 0/1:109,104:213:99:2371,0,2574 16 1634385 rs34762152 C T 1964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.47;SOR=0.699 GT:AD:DP:GQ:PL 0/1:75,83:158:99:1993,0,1715 16 1639793 rs12447357 C G 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=1.059;SOR=0.582 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1432,0,1647 16 1657284 rs1894649 C G 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.77;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=1.376;SOR=0.678 GT:AD:DP:GQ:PL 0/1:82,69:151:99:1563,0,2061 16 1664931 rs7201813 T C 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=4.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-1.213;SOR=0.987 GT:AD:DP:GQ:PL 0/1:78,82:160:99:1931,0,2012 16 1682281 rs3169425 A G 1454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=7.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.955;SOR=0.58 GT:AD:DP:GQ:PL 0/1:80,62:142:99:1483,0,2001 16 1797050 rs2294613 C T 2170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.188;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.375;SOR=0.576 GT:AD:DP:GQ:PL 0/1:100,85:185:99:2199,0,2542 16 1815946 rs2575371 C T 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=0.805;SOR=0.754 GT:AD:DP:GQ:PL 0/1:53,58:111:99:1468,0,1391 16 1817754 rs2076427 A G 2691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.591;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-2.796;SOR=0.655 GT:AD:DP:GQ:PL 0/1:102,108:210:99:2720,0,2419 16 1817935 rs2076429 A C 2243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.028;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-1.753;SOR=0.843 GT:AD:DP:GQ:PL 0/1:101,89:190:99:2272,0,2360 16 1818503 rs2076431 G C 3752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.404;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=6.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.46;ReadPosRankSum=1.557;SOR=0.524 GT:AD:DP:GQ:PL 0/1:96,132:228:99:3781,0,2523 16 1820992 rs11890 T A 2069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.77;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.875;SOR=0.51 GT:AD:DP:GQ:PL 0/1:75,86:161:99:2098,0,1806 16 1822797 rs4027362 C CACCT 4712.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=4.382;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.016;QD=19.16;ReadPosRankSum=-1.177;SOR=0.962 GT:AD:DP:GQ:PL 0/1:124,122:246:99:4750,0,7104 16 1823444 rs761065 C G 3695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.52;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=2.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=0.227;SOR=0.878 GT:AD:DP:GQ:PL 0/1:151,128:279:99:3724,0,4247 16 1827836 rs1178432 T C 9435.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9464,929,0 16 1836796 rs2235648 C A 2796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=1.282;SOR=0.7 GT:AD:DP:GQ:PL 0/1:122,124:246:99:2825,0,2869 16 1838640 rs344359 T C 6580.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6609,683,0 16 1838703 rs11540961 G A 2321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.068;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=-1.909;SOR=0.725 GT:AD:DP:GQ:PL 0/1:136,103:239:99:2350,0,3328 16 1841033 rs17559 G A 2599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.647;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.924;SOR=0.663 GT:AD:DP:GQ:PL 0/1:123,111:234:99:2628,0,3211 16 1842209 rs3751893 A G 7573.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7602,741,0 16 1843672 rs3817902 T C 2395.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2424,243,0 16 1859850 rs1742442 A G 738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.1;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-0.296;SOR=0.737 GT:AD:DP:GQ:PL 0/1:37,33:70:99:767,0,878 16 1867014 rs11863390 G C 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.09;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=7.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=-0.523;SOR=0.631 GT:AD:DP:GQ:PL 0/1:23,25:48:99:644,0,566 16 1907946 rs411193 C T 1370.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.662 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1399,132,0 16 1918125 rs1742446 T G 2050.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.65;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.98;ReadPosRankSum=-0.588;SOR=0.693 GT:AD:DP:GQ:PL 1/1:2,74:76:99:2079,176,0 16 1961674 rs337285 G C 2809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-1.366;SOR=0.592 GT:AD:DP:GQ:PL 0/1:129,120:249:99:2838,0,3222 16 1962046 rs1742399 C T 5266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.35;ReadPosRankSum=1.521;SOR=0.583 GT:AD:DP:GQ:PGT:PID:PL 0/1:149,138:287:99:0|1:1962046_C_T:5295,0,5805 16 1962047 rs1657140 G A 5266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.61;ReadPosRankSum=1.605;SOR=0.607 GT:AD:DP:GQ:PGT:PID:PL 0/1:147,136:283:99:0|1:1962046_C_T:5295,0,5805 16 1962132 rs8055325 G A 2642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=1.171;SOR=0.782 GT:AD:DP:GQ:PL 0/1:127,109:236:99:2671,0,3354 16 2014283 rs2286466 A G 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.743;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=1.497;SOR=1.179 GT:AD:DP:GQ:PL 0/1:42,36:78:99:1138,0,1014 16 2014528 rs17135712 G A 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=4.671;MLEAC=1;MLEAF=0.5;MQ=57.45;MQRankSum=-6.088;QD=8.12;ReadPosRankSum=-0.796;SOR=1.043 GT:AD:DP:GQ:PL 0/1:107,63:170:99:1409,0,2739 16 2014591 rs1141684 C T 1230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.5;MQ=57.24;MQRankSum=-6.647;QD=8.79;ReadPosRankSum=0.718;SOR=1.133 GT:AD:DP:GQ:PL 0/1:89,51:140:99:1259,0,2284 16 2025206 rs8053843 A C 2952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.689;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=-0.136;SOR=0.776 GT:AD:DP:GQ:PL 0/1:103,103:206:99:2981,0,2583 16 2025604 rs8052713 G C 2649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.761;SOR=0.779 GT:AD:DP:GQ:PL 0/1:130,110:240:99:2678,0,3371 16 2025678 rs17602 C A 2586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.924;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.321;SOR=0.808 GT:AD:DP:GQ:PL 0/1:136,114:250:99:2615,0,3827 16 2028402 rs8460 A C 4481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.101;SOR=0.702 GT:AD:DP:GQ:PL 0/1:162,179:341:99:4510,0,4161 16 2030127 rs61729118 G A 1546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.99;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.937;SOR=0.547 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1575,0,1892 16 2036048 rs1046495 T C 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.64;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=5.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=1.18;SOR=0.327 GT:AD:DP:GQ:PL 0/1:67,50:117:99:1244,0,1809 16 2048796 rs1058474 C T 3017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=6.811;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=1.183;SOR=0.848 GT:AD:DP:GQ:PL 0/1:129,121:250:99:3046,0,3368 16 2048826 rs2240691 C G 3527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.42;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=4.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=0.214;SOR=0.96 GT:AD:DP:GQ:PL 0/1:123,131:254:99:3556,0,3037 16 2049640 rs2286469 A G 3795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.364;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.09;SOR=0.884 GT:AD:DP:GQ:PL 0/1:170,148:318:99:3824,0,4219 16 2049728 rs11248905 C T 3120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=5.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-1.233;SOR=0.513 GT:AD:DP:GQ:PL 0/1:187,131:318:99:3149,0,4844 16 2049849 rs12149722 T C 3863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.332;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-0.051;SOR=0.766 GT:AD:DP:GQ:PL 0/1:157,152:309:99:3892,0,4147 16 2049882 rs141374045 G GTCC 6355.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=2.705;QD=20.18;ReadPosRankSum=-0.621;SOR=0.818 GT:AD:DP:GQ:PL 0/1:150,165:318:99:6393,0,6012 16 2050192 rs11556528 G T 2893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=6.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.115;SOR=1.067 GT:AD:DP:GQ:PL 0/1:121,123:244:99:2922,0,2883 16 2070164 rs2286471 C T 2450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.866;SOR=0.693 GT:AD:DP:GQ:PL 0/1:99,105:204:99:2479,0,2479 16 2070327 rs3217040 G GA 2080.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.25;ReadPosRankSum=0.262;SOR=0.453 GT:AD:DP:GQ:PL 0/1:48,66:114:99:2118,0,1442 16 2070568 rs2286472 A C 840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.78;ReadPosRankSum=-0.256;SOR=0.672 GT:AD:DP:GQ:PL 0/1:66,42:108:99:869,0,1558 16 2114407 rs34012042 C T 3512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.188;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=3.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=0.466;SOR=0.74 GT:AD:DP:GQ:PL 0/1:128,151:279:99:3541,0,3227 16 2115506 rs45517185 C T 975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.04;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=1.032;SOR=0.786 GT:AD:DP:GQ:PL 0/1:51,46:97:99:1004,0,1155 16 2138218 rs1800718 A C 2748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-1.466;SOR=0.746 GT:AD:DP:GQ:PL 0/1:94,108:202:99:2777,0,2365 16 2138269 rs1748 T C 3312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.398;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=1.658;SOR=0.69 GT:AD:DP:GQ:PL 0/1:110,120:230:99:3341,0,2653 16 2140010 rs7203729 A G 2113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-1.573;SOR=0.695 GT:AD:DP:GQ:PL 0/1:108,86:194:99:2142,0,2799 16 2140454 rs3087632 T C 2065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.287;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=1.25;SOR=0.675 GT:AD:DP:GQ:PL 0/1:130,92:222:99:2094,0,3011 16 2140680 rs10960 T C 3259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.908;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=8.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.665;SOR=0.408 GT:AD:DP:GQ:PL 0/1:150,132:282:99:3288,0,3722 16 2142942 rs142616270 C T 1211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.373;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=8.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-1.625;SOR=1.433 GT:AD:DP:GQ:PL 0/1:63,52:115:99:1240,0,1390 16 2152387 rs77028972 A G 3200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.93;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=5.676;MLEAC=1;MLEAF=0.5;MQ=47.11;MQRankSum=-3.042;QD=19.52;ReadPosRankSum=1.04;SOR=1.154 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,82:164:99:0|1:2152387_A_G:3229,0,3987 16 2152388 rs9935834 C G 3200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.514;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=6.761;MLEAC=1;MLEAF=0.5;MQ=47.2;MQRankSum=-2.894;QD=19.4;ReadPosRankSum=1.461;SOR=1.181 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,83:165:99:0|1:2152387_A_G:3229,0,3987 16 2152651 rs9928278 T C 1568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.723;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.8;ReadPosRankSum=-0.159;SOR=0.908 GT:AD:DP:GQ:PL 0/1:51,55:106:99:1597,0,1248 16 2154640 rs144557371 G A 673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.669;MLEAC=1;MLEAF=0.5;MQ=41.31;MQRankSum=-4.211;QD=6.48;ReadPosRankSum=-0.964;SOR=0.988 GT:AD:DP:GQ:PL 0/1:68,36:104:99:702,0,1777 16 2155426 rs9936785 T C 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.255;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=17.937;MLEAC=1;MLEAF=0.5;MQ=50.13;MQRankSum=-9.479;QD=10.9;ReadPosRankSum=1.896;SOR=2.156 GT:AD:DP:GQ:PL 0/1:77,41:118:99:1314,0,2194 16 2156021 rs28575767 A G 1096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.291;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.5;MQ=49.54;MQRankSum=-3.946;QD=8.57;ReadPosRankSum=1.212;SOR=0.511 GT:AD:DP:GQ:PL 0/1:87,41:128:99:1125,0,2183 16 2156447 rs2003782 G A 2107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.248;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=1.506;QD=11.84;ReadPosRankSum=2.059;SOR=0.742 GT:AD:DP:GQ:PL 0/1:90,88:178:99:2136,0,2477 16 2156850 rs2457533 A G 144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.453;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.34;MQRankSum=-2.546;QD=3.08;ReadPosRankSum=0.977;SOR=0.902 GT:AD:DP:GQ:PL 0/1:39,8:47:99:173,0,1041 16 2159996 rs9935526 G A 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.5;MQ=57.62;MQRankSum=-0.274;QD=11.52;ReadPosRankSum=-0.968;SOR=0.557 GT:AD:DP:GQ:PL 0/1:89,76:165:99:1929,0,2252 16 2160503 rs71385734 T G 3782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.259;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=1.51;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.23;QD=14.72;ReadPosRankSum=0.873;SOR=0.7 GT:AD:DP:GQ:PL 0/1:111,146:257:99:3811,0,2491 16 2160973 rs116092985 A G 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.271;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.519;MLEAC=1;MLEAF=0.5;MQ=55.95;MQRankSum=-5.003;QD=12.86;ReadPosRankSum=2.182;SOR=0.73 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1507,0,1524 16 2161793 rs74331768 G A 2399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.14;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=-1.393;QD=15.19;ReadPosRankSum=-1.827;SOR=0.536 GT:AD:DP:GQ:PGT:PID:PL 0/1:94,64:158:99:0|1:2161793_G_A:2428,0,5298 16 2161796 rs75510884 G A 2420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.525;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=-1.335;QD=15.32;ReadPosRankSum=-2.257;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,66:158:99:0|1:2161793_G_A:2449,0,5295 16 2162361 rs2549677 A G 742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.353;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.5;MQ=54.14;MQRankSum=-1.398;QD=6.69;ReadPosRankSum=0.389;SOR=0.374 GT:AD:DP:GQ:PL 0/1:75,36:111:99:771,0,1905 16 2162887 rs2369068 A G 1649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.5;MQ=59.42;MQRankSum=-3.253;QD=10.38;ReadPosRankSum=-0.126;SOR=0.638 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1678,0,1973 16 2164211 rs148709380 G A 124.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.294;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.884;MLEAC=1;MLEAF=0.5;MQ=52.02;MQRankSum=-7.854;QD=0.7;ReadPosRankSum=2.23;SOR=0.647 GT:AD:DP:GQ:PL 0/1:149,28:177:99:153,0,4020 16 2164808 rs40433 C T 1906.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.837;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=3.579;MLEAC=2;MLEAF=1;MQ=33.35;MQRankSum=1.294;QD=33.45;ReadPosRankSum=-0.549;SOR=0.689 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1935,161,0 16 2165395 rs138575342 G A 90.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.93;MQRankSum=-5.255;QD=0.47;ReadPosRankSum=0.622;SOR=0.686 GT:AD:DP:GQ:PL 0/1:169,26:195:99:119,0,4301 16 2165630 rs35929659 T C 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.02;MQRankSum=-2.803;QD=9.83;ReadPosRankSum=0.917;SOR=0.713 GT:AD:DP:GQ:PL 0/1:63,52:115:99:1159,0,1477 16 2167874 rs199685642 G A 1622.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.953;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=10.112;MLEAC=1;MLEAF=0.5;MQ=28.81;MQRankSum=6.138;QD=16.07;ReadPosRankSum=-0.332;SOR=1.624 GT:AD:DP:GQ:PL 0/1:42,59:101:99:1651,0,760 16 2259393 rs1129185 C G 2638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.485;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.126;SOR=0.669 GT:AD:DP:GQ:PL 0/1:103,104:207:99:2667,0,2745 16 2282256 rs26839 G A 9768.77 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,326:326:99:9797,976,0 16 2287649 rs62621282 A C 3884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.28;SOR=0.532 GT:AD:DP:GQ:PL 0/1:158,158:316:99:3913,0,3983 16 2331430 rs149532 A G 6879.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6908,699,0 16 2367336 rs13332514 G A 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.09;ReadPosRankSum=-0.402;SOR=0.74 GT:AD:DP:GQ:PL 0/1:141,99:240:99:2209,0,3620 16 2367424 rs13332547 G A 2788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.975;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=4.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=1.821;SOR=0.476 GT:AD:DP:GQ:PL 0/1:117,121:238:99:2817,0,3108 16 2498849 rs28670436 G A 2686.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.88;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2715,315,0 16 2510710 rs117764265 C G 2574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.7;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=-0.873;SOR=0.648 GT:AD:DP:GQ:PL 0/1:102,96:198:99:2603,0,2582 16 2512523 rs3810794 G A 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.244;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.36;SOR=0.88 GT:AD:DP:GQ:PL 0/1:99,78:177:99:1917,0,2608 16 2550406 rs12373107 G A 3793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=1.071;SOR=0.725 GT:AD:DP:GQ:PL 0/1:137,172:309:99:3822,0,3189 16 2580755 rs76722821 G C 5752.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.83;ReadPosRankSum=1.046;SOR=0.652 GT:AD:DP:GQ:PL 0/1:199,217:416:99:5781,0,5234 16 2806619 rs117160431 C T 2345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.104;SOR=0.609 GT:AD:DP:GQ:PL 0/1:107,101:208:99:2374,0,2894 16 2812890 rs2240141 A G 7665.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7694,726,0 16 2812939 rs2240140 C A 6704.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.759;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.54;ReadPosRankSum=0.36;SOR=0.757 GT:AD:DP:GQ:PL 1/1:2,225:227:99:6733,599,0 16 2814162 rs3094775 G A 5983.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.17;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,186:186:99:6012,558,0 16 2815237 rs3094773 A C 7864.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7893,749,0 16 2818161 rs2301802 T C 7801.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7830,726,0 16 2821573 rs8017 C T 8565.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8594,851,0 16 2821988 rs3214191 TC T 11200.7 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=37.21;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,301:301:99:11238,906,0 16 2835189 rs12599918 G A 1935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.39;SOR=0.64 GT:AD:DP:GQ:PL 0/1:94,82:176:99:1964,0,2435 16 2854907 rs2015682 C T 1287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.598;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.771;SOR=0.591 GT:AD:DP:GQ:PL 0/1:50,60:110:99:1316,0,1282 16 2871121 rs11076844 T C 2371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.997;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=0.627;SOR=0.835 GT:AD:DP:GQ:PL 0/1:79,87:166:99:2400,0,1846 16 2871555 rs10641 G A 2171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=-0.394;SOR=0.828 GT:AD:DP:GQ:PL 0/1:138,98:236:99:2200,0,3601 16 2903081 rs3743944 G A 2455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.937;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.34;ReadPosRankSum=-0.406;SOR=0.541 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,67:127:99:0|1:2903047_G_C:2484,0,2128 16 2903850 rs112285893 G C 1652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.983;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=0.132;SOR=0.542 GT:AD:DP:GQ:PL 0/1:98,73:171:99:1681,0,2496 16 2988469 rs12929501 C G 5636.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=1.307 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5665,525,0 16 3065596 rs2257295 T C 3522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.457;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=1.111;QD=13;ReadPosRankSum=0.213;SOR=0.766 GT:AD:DP:GQ:PL 0/1:129,142:271:99:3551,0,3139 16 3075701 rs2717664 C T 901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-2.095;SOR=0.678 GT:AD:DP:GQ:PL 0/1:49,39:88:99:930,0,1347 16 3075999 rs2245000 C G 2636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.634;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.187;SOR=0.75 GT:AD:DP:GQ:PL 0/1:114,103:217:99:2665,0,2909 16 3079685 rs2244494 T C 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.112;SOR=0.614 GT:AD:DP:GQ:PL 0/1:61,58:119:99:1429,0,1599 16 3085335 rs7204908 G C 5934.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.16;SOR=1.325 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5963,537,0 16 3085375 rs11077096 G A 6663.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6692,653,0 16 3100095 rs10431961 C T 7095.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7124,722,0 16 3119020 rs371244098 A G 822.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.621;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=5.408;MLEAC=1;MLEAF=0.5;MQ=37.52;MQRankSum=-1.549;QD=5.79;ReadPosRankSum=0.279;SOR=1.013 GT:AD:DP:GQ:PL 0/1:94,48:142:99:851,0,2585 16 3119167 rs34184287 T C 2756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=43.49;MQRankSum=-1.041;QD=10.25;ReadPosRankSum=0.142;SOR=0.663 GT:AD:DP:GQ:PL 0/1:141,128:269:99:2785,0,3221 16 3119297 rs71818662 C CG 2629.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=17.636;MLEAC=1;MLEAF=0.5;MQ=56.84;MQRankSum=-12.872;QD=11.19;ReadPosRankSum=3.772;SOR=1.59 GT:AD:DP:GQ:PGT:PID:PL 0/1:159,76:235:99:0|1:3119297_C_CG:2667,0,9026 16 3119304 rs2981599 A G 2623.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.599;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=17.644;MLEAC=1;MLEAF=0.5;MQ=56.64;MQRankSum=-13.212;QD=10.89;ReadPosRankSum=2.277;SOR=1.569 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,75:241:99:0|1:3119297_C_CG:2652,0,9164 16 3142911 rs11644978 C G 3440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.021;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.575;SOR=0.653 GT:AD:DP:GQ:PL 0/1:146,147:293:99:3469,0,3437 16 3165425 rs909410 A G 2771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.356;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=5.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.437;SOR=0.464 GT:AD:DP:GQ:PL 0/1:108,117:225:99:2800,0,2478 16 3170188 rs12032 C T 5123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.914;ClippingRankSum=0;DB;DP=492;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.249;SOR=0.847 GT:AD:DP:GQ:PL 0/1:279,211:490:99:5152,0,7056 16 3191356 rs2735537 G A 3477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.256;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=2.206;SOR=0.596 GT:AD:DP:GQ:PL 0/1:157,155:312:99:3506,0,4056 16 3254470 rs1834026 T C 2116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.651;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.239;SOR=0.625 GT:AD:DP:GQ:PL 0/1:90,84:174:99:2145,0,2200 16 3254972 rs2075851 T C 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.971;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=1.558;SOR=0.628 GT:AD:DP:GQ:PL 0/1:63,77:140:99:2029,0,1403 16 3273905 rs61731422 C T 2419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=3.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.34;SOR=0.951 GT:AD:DP:GQ:PL 0/1:128,108:236:99:2448,0,3226 16 3293888 rs1231122 C T 1778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.193;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=9.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=1.767;SOR=1.265 GT:AD:DP:GQ:PL 0/1:66,69:135:99:1807,0,1643 16 3293922 rs1231123 A T 2083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=9.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-0.592;SOR=1.09 GT:AD:DP:GQ:PL 0/1:73,85:158:99:2112,0,1852 16 3297073 rs224206 A G 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.245;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-0.293;SOR=0.77 GT:AD:DP:GQ:PL 0/1:140,90:230:99:1977,0,3321 16 3297175 rs224207 T C 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=5.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.19;SOR=0.392 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,69:175:99:0|1:3297175_T_C:2405,0,5199 16 3297181 rs224208 C T 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.01;ReadPosRankSum=0.039;SOR=0.443 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,60:151:99:0|1:3297175_T_C:2294,0,4981 16 3299749 rs224213 G A 1653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=9.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.321;SOR=1.416 GT:AD:DP:GQ:PL 0/1:73,70:143:99:1682,0,1924 16 3304573 rs224223 G T 3112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.647;SOR=0.711 GT:AD:DP:GQ:PL 0/1:140,133:273:99:3141,0,3629 16 3304654 rs224224 T C 3179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.961;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.771;SOR=0.83 GT:AD:DP:GQ:PL 0/1:157,129:286:99:3208,0,3749 16 3304762 rs224225 A G 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.701;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-1.243;SOR=0.515 GT:AD:DP:GQ:PL 0/1:106,108:214:99:2711,0,2549 16 3405986 rs1218762 G A 2113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.47;ReadPosRankSum=-1.194;SOR=0.541 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,54:121:99:0|1:3405986_G_A:2142,0,3565 16 3405994 rs1228348 A G 2184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.94;ReadPosRankSum=-2.456;SOR=0.565 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,62:129:99:0|1:3405986_G_A:2213,0,3592 16 3406387 rs1218763 C G 8173.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8202,791,0 16 3406516 rs11643487 A G 2205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.729;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=4.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.142;SOR=1.03 GT:AD:DP:GQ:PL 0/1:120,87:207:99:2234,0,2986 16 3406626 rs11648783 G A 2320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-1.245;SOR=0.756 GT:AD:DP:GQ:PL 0/1:117,99:216:99:2349,0,2981 16 3447282 rs27241 C G 2841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.122;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.157;SOR=0.63 GT:AD:DP:GQ:PL 0/1:119,113:232:99:2870,0,3000 16 3452193 rs37811 T G 3255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-1.671;SOR=0.709 GT:AD:DP:GQ:PL 0/1:118,129:247:99:3284,0,3063 16 3458609 rs11640177 G A 3300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.905;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.361;SOR=0.585 GT:AD:DP:GQ:PL 0/1:139,128:267:99:3329,0,3527 16 3490922 rs2270494 G C 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.27;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-1.362;SOR=0.703 GT:AD:DP:GQ:PL 0/1:120,104:224:99:2393,0,2816 16 3533577 rs1137454 C G 4672.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.68;SOR=1.435 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4701,429,0 16 3534892 rs13740 G A 9347.77 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,320:320:99:9376,959,0 16 3583173 rs3751837 C T 685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=5.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-1.428;SOR=0.754 GT:AD:DP:GQ:PL 0/1:47,34:81:99:714,0,1120 16 3602227 rs56070390 AG A 3139.73 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.28;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3177,268,0 16 3613126 rs12445430 C T 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.41;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=4.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.621;SOR=1.028 GT:AD:DP:GQ:PL 0/1:120,89:209:99:2104,0,3066 16 3613150 rs8044743 A G 2215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.344;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.071;SOR=0.848 GT:AD:DP:GQ:PL 0/1:122,98:220:99:2244,0,3188 16 3639139 rs3810812 A G 3750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.527;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=0.506;SOR=0.767 GT:AD:DP:GQ:PL 0/1:121,144:265:99:3779,0,3010 16 3639827 rs3810813 G A 3296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.173;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=3.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.85;ReadPosRankSum=0.534;SOR=0.937 GT:AD:DP:GQ:PL 0/1:82,126:208:99:3325,0,2165 16 3656482 rs8061528 C T 1703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.026;SOR=0.737 GT:AD:DP:GQ:PL 0/1:67,69:136:99:1732,0,1578 16 3707747 rs1053874 G A 2574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.112;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.461;SOR=0.801 GT:AD:DP:GQ:PL 0/1:103,107:210:99:2603,0,2498 16 3708193 rs1059857 G A 1263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.824;QD=9.16;ReadPosRankSum=0.026;SOR=0.859 GT:AD:DP:GQ:PL 0/1:81,57:138:99:1292,0,2068 16 3724465 rs13926 G C 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-0.411;SOR=0.82 GT:AD:DP:GQ:PL 0/1:118,124:242:99:2908,0,2858 16 3726160 rs8050400 A G 3510.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.09;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3539,374,0 16 4016676 rs2230742 A G 7779.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7808,767,0 16 4027605 rs2240735 C T 6575.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=30.03;SOR=1.242 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6604,657,0 16 4033436 rs2230739 T C 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.651;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.01;ReadPosRankSum=0.115;SOR=1.095 GT:AD:DP:GQ:PL 0/1:64,80:144:99:2333,0,1461 16 4165432 rs2530898 T C 6735.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6764,710,0 16 4245693 rs10852643 A G 6250.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6279,617,0 16 4254523 rs60137128 C T 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.943;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.445;SOR=0.849 GT:AD:DP:GQ:PL 0/1:74,69:143:99:1507,0,1553 16 4310468 rs251732 C G 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.011;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-1.585;SOR=0.682 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1811,0,1782 16 4386814 rs669561 T C 6979.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7008,671,0 16 4387261 rs3810817 A C 4008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.367;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=6.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.219;SOR=0.582 GT:AD:DP:GQ:PL 0/1:141,157:298:99:4037,0,3482 16 4387424 rs8057701 A G 3115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.242;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=6.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=1.019;SOR=0.851 GT:AD:DP:GQ:PL 0/1:111,115:226:99:3144,0,2734 16 4414987 rs2277851 G A 2755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.261;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=5.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.519;SOR=1.034 GT:AD:DP:GQ:PL 0/1:114,115:229:99:2784,0,2887 16 4431202 rs758044 A G 8891.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8920,879,0 16 4432029 rs3810818 A C 10018.8 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.85;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,305:305:99:10047,915,0 16 4445327 rs3747579 C T 6543.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6572,677,0 16 4475868 rs2304631 A T 3631.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=1.63 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3660,348,0 16 4476089 rs1139652 T C 6378.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.05;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6407,579,0 16 4484396 rs1139653 A T 3070.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3099,317,0 16 4496973 rs2304633 T A 6069.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6098,638,0 16 4505572 rs202069889 C G 1771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.966;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.735;SOR=0.955 GT:AD:DP:GQ:PL 0/1:72,75:147:99:1800,0,1621 16 4674954 rs3747587 C G 4042.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4071,402,0 16 4714745 rs3890069 A G 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=-0.586;SOR=0.829 GT:AD:DP:GQ:PL 0/1:71,93:164:99:2221,0,1718 16 4721468 rs715109 T C 3467.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3496,369,0 16 4733282 rs78699679 C T 1619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=1.025;SOR=0.865 GT:AD:DP:GQ:PL 0/1:75,66:141:99:1648,0,1987 16 4736316 rs841225 C T 8289.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8318,872,0 16 4748825 rs841214 C T 2676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.863;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.591;SOR=0.72 GT:AD:DP:GQ:PL 0/1:139,136:282:99:2705,0,3757 16 4751004 rs117007233 G A 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.948;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.868;SOR=0.608 GT:AD:DP:GQ:PL 0/1:143,110:253:99:2513,0,3347 16 4751045 rs863980 C T 6765.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6794,696,0 16 4752107 . ACTG A 2716.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0;DP=281;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.162;QD=11.23;ReadPosRankSum=-1.571;SOR=0.743 GT:AD:DP:GQ:PL 0/1:125,117:249:99:2754,0,4845 16 4752134 rs841210 A G 9966.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=38.04;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,262:262:99:9995,800,0 16 4755108 rs78074706 G A 2686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.571;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=0.058;SOR=0.707 GT:AD:DP:GQ:PL 0/1:139,116:255:99:2715,0,3281 16 4774775 rs35182782 T G 1279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.387;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=0.55;SOR=0.653 GT:AD:DP:GQ:PL 0/1:47,54:101:99:1308,0,980 16 4777197 rs118150980 T C 2499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.869;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.92;ReadPosRankSum=-1.375;SOR=0.753 GT:AD:DP:GQ:PL 0/1:61,96:157:99:2528,0,1333 16 4790273 rs859305 G A 6992.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7021,712,0 16 4794873 rs2075469 C T 6023.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6052,593,0 16 4796393 rs737700 A G 4540.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.223 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4569,468,0 16 4796418 rs61742417 G A 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=0.967;SOR=0.578 GT:AD:DP:GQ:PL 0/1:72,100:172:99:2331,0,1631 16 4797356 rs118086912 G A 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.51;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=0.249;SOR=0.502 GT:AD:DP:GQ:PL 0/1:119,87:206:99:1955,0,3330 16 4797457 rs17853375 C T 3215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.593;SOR=0.683 GT:AD:DP:GQ:PL 0/1:189,146:335:99:3244,0,4702 16 4802370 rs3747601 C A 8135.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8164,790,0 16 4802386 rs3747602 G T 2951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-1.197;SOR=0.955 GT:AD:DP:GQ:PL 0/1:154,121:275:99:2980,0,4150 16 4812705 rs61733564 A G 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.31;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=8.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=0.222;SOR=0.347 GT:AD:DP:GQ:PL 0/1:104,93:197:99:2183,0,2553 16 4815602 rs12919587 T C 3778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=-0.872;SOR=0.822 GT:AD:DP:GQ:PL 0/1:133,162:295:99:3807,0,3222 16 4815608 rs4786549 A G 11798.8 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.43;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,307:307:99:11827,925,0 16 4833970 rs759991 C T 2401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.668;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=4.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.63;SOR=0.758 GT:AD:DP:GQ:PL 0/1:84,98:182:99:2430,0,2283 16 4835793 rs138341986 A G 127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=4.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.46;ReadPosRankSum=0.433;SOR=0.255 GT:AD:DP:GQ:PL 0/1:38,14:52:99:156,0,889 16 4835794 rs117315155 G A,GA 1797.77 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=34.57;ReadPosRankSum=-1;SOR=1.27 GT:AD:DP:GQ:PL 1/2:2,14,36:52:99:1826,870,806,233,0,163 16 4837545 rs9673735 A G 4122.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4151,434,0 16 4846068 rs2075465 T C 10006.8 PASS AC=2;AF=1;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.983 GT:AD:DP:GQ:PL 1/1:0,326:326:99:10035,978,0 16 4852373 . G C 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.821;ClippingRankSum=0;DP=96;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=0.62;SOR=0.444 GT:AD:DP:GQ:PL 0/1:59,37:96:99:928,0,1569 16 4855279 rs8064024 A G 4251.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4280,441,0 16 4861709 rs2085329 G C 5591.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5620,567,0 16 4923091 rs2251666 G A 1712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.033;SOR=1.048 GT:AD:DP:GQ:PL 0/1:80,73:153:99:1741,0,1894 16 4930100 rs1876359 C T 1716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.747;SOR=0.687 GT:AD:DP:GQ:PL 0/1:79,72:151:99:1745,0,1907 16 4938160 rs2734742 T G 3488.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3517,338,0 16 4940809 rs2471844 A G 7783.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7812,753,0 16 4944518 rs1876363 C G 8990.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,282:282:99:9019,846,0 16 4945687 rs35340520 G T 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.787;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.054;SOR=0.595 GT:AD:DP:GQ:PL 0/1:103,106:209:99:2500,0,2820 16 5050897 rs2286966 G C 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.305;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-0.837;SOR=0.603 GT:AD:DP:GQ:PL 0/1:63,43:106:99:1115,0,1688 16 5061085 rs2908669 A C 1583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.523;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-1.622;SOR=0.502 GT:AD:DP:GQ:PL 0/1:72,62:134:99:1612,0,1812 16 5075542 rs887854 G A 8591.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.979;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.93;ReadPosRankSum=-0.475;SOR=0.246 GT:AD:DP:GQ:PL 1/1:1,296:297:99:8620,876,0 16 5077395 rs59131700 TGGGAGGA T 1529.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.45;ReadPosRankSum=-0.503;SOR=1.108 GT:AD:DP:GQ:PL 0/1:52,41:93:99:1567,0,2037 16 5083483 rs2972272 T C 9631.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,302:302:99:9660,906,0 16 5094706 rs11642955 A G 333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DB;DP=15;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.25;ReadPosRankSum=1.809;SOR=0.293 GT:AD:DP:GQ:PL 0/1:4,11:15:99:362,0,100 16 5094844 . C CA 213.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.03;ReadPosRankSum=-1.004;SOR=0.57 GT:AD:DP:GQ:PL 0/1:36,17:59:99:251,0,711 16 5106050 rs77055786 A G 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=0.013;SOR=1.067 GT:AD:DP:GQ:PL 0/1:38,48:86:99:1193,0,1024 16 5106184 rs741164 C T 1604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-0.24;SOR=0.678 GT:AD:DP:GQ:PL 0/1:100,76:176:99:1633,0,2371 16 5122072 rs112683515 G GGTCT 4467.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.168;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=-2.068;QD=17.94;ReadPosRankSum=2.533;SOR=0.755 GT:AD:DP:GQ:PL 0/1:135,114:249:99:4505,0,5969 16 5123270 rs62036244 C T 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.949;SOR=0.711 GT:AD:DP:GQ:PL 0/1:47,50:97:99:1162,0,1122 16 5128817 rs17849848 G A 4475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.205;ClippingRankSum=0;DB;DP=477;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.983;SOR=0.743 GT:AD:DP:GQ:PL 0/1:257,219:476:99:4504,0,6546 16 5132636 rs1047732 C T 2867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.827;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.5;MQ=59.78;MQRankSum=1.904;QD=10.82;ReadPosRankSum=1.5;SOR=0.862 GT:AD:DP:GQ:PL 0/1:140,125:265:99:2896,0,3288 16 5134898 rs59332251 C CTA 6004.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.026;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=3.156;MLEAC=1;MLEAF=0.5;MQ=55.78;MQRankSum=-0.986;QD=19.56;ReadPosRankSum=-0.742;SOR=0.899 GT:AD:DP:GQ:PL 0/1:151,156:307:99:6042,0,5572 16 5139186 rs12928528 G C 15687.8 PASS AC=2;AF=1;AN=2;DB;DP=512;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=30.7;SOR=0.697 GT:AD:DP:GQ:PL 1/1:0,511:511:99:15716,1533,0 16 5139217 rs9745857 C G 14799.8 PASS AC=2;AF=1;AN=2;DB;DP=498;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=29.84;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,496:496:99:14828,1487,0 16 5140561 rs9673770 C T 3885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.776;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=5.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=0.64;SOR=0.464 GT:AD:DP:GQ:PL 0/1:132,159:291:99:3914,0,3098 16 5145474 rs7192650 C T 6448.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.78;QD=27.92;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6477,690,0 16 6533549 rs7187508 C A 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-1.343;SOR=0.908 GT:AD:DP:GQ:PL 0/1:99,80:179:99:1839,0,2284 16 8728953 rs1731044 C T 5641.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5670,567,0 16 8729124 rs2302607 G A 6614.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6643,687,0 16 8736028 rs1614616 T C 2248.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2277,228,0 16 8738398 rs1641065 A G 4384.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.32;SOR=1.576 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4413,420,0 16 8738427 rs1641066 T C 5843.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5872,564,0 16 8738499 rs1731000 G A 8396.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8425,869,0 16 8738579 rs1641067 A G 7414.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7443,722,0 16 8739954 rs1641070 G A 4340.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4369,448,0 16 8740015 rs1730994 A C 4518.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4547,464,0 16 8839954 rs1731017 A G 3728.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3757,393,0 16 8841960 rs1641010 T C 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-2.066;SOR=1.432 GT:AD:DP:GQ:PL 0/1:36,36:72:99:928,0,857 16 8844389 rs2229157 C T 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-1.791;SOR=0.701 GT:AD:DP:GQ:PL 0/1:62,60:122:99:1289,0,1527 16 8858580 rs2302608 T A 2748.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2777,284,0 16 8858700 rs112675542 GCA G 183.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.66;ReadPosRankSum=-0.13;SOR=0.843 GT:AD:DP:GQ:PL 0/1:95,16:111:99:221,0,3053 16 8873456 rs1079348 T C 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=0.915;SOR=0.66 GT:AD:DP:GQ:PL 0/1:38,47:85:99:1155,0,894 16 8905054 rs11074924 T C 903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.061;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.06;ReadPosRankSum=-2.427;SOR=1.157 GT:AD:DP:GQ:PL 0/1:23,37:60:99:932,0,467 16 8906914 rs34258285 A C 930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-1.192;SOR=0.881 GT:AD:DP:GQ:PL 0/1:47,45:92:99:959,0,1023 16 8952248 rs988065 A G 6853.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,238:238:99:6882,712,0 16 8995927 rs2304466 G A 3003.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3032,323,0 16 9017061 rs139138924 T TACAACGATGTGGGGGTTTGTAGTTGCATCATTTAA 3314.73 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=63.74;SOR=2.049 GT:AD:DP:GQ:PL 1/1:0,52:52:99:3352,220,0 16 9030444 rs1382390 C G 3753.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3782,360,0 16 9916204 rs9806806 C G 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.265;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=0.349;SOR=0.652 GT:AD:DP:GQ:PL 0/1:47,60:107:99:1468,0,1100 16 9943666 rs2229193 C T 1859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.064;SOR=0.555 GT:AD:DP:GQ:PL 0/1:69,80:149:99:1888,0,1746 16 10524656 rs56252625 GGAC G 4699.73 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.57;QD=43.52;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,108:108:99:4737,325,0 16 10574829 rs12596111 A T 1689.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1718,177,0 16 10575824 rs1970817 C A 4925.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4954,504,0 16 10631945 rs1504883 G A 5747.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.306 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5776,587,0 16 10769958 rs2719710 T C 2756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=0.276;SOR=0.695 GT:AD:DP:GQ:PL 0/1:128,126:254:99:2785,0,2887 16 10862964 rs11716 A G 918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.713;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=0.363;SOR=0.593 GT:AD:DP:GQ:PL 0/1:37,39:76:99:947,0,834 16 10995933 rs8046121 A G 7037.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7066,720,0 16 11002904 rs2228238 G A 5618.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5647,570,0 16 11002927 rs7197779 A G 5945.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5974,620,0 16 11016045 rs2229322 C T 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.566;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=-0.46;SOR=0.707 GT:AD:DP:GQ:PL 0/1:92,65:157:99:1451,0,2204 16 11056378 rs16957839 C T 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.685;SOR=0.646 GT:AD:DP:GQ:PL 0/1:80,76:156:99:1727,0,1895 16 11063011 rs2302558 C T 1017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.724;SOR=0.447 GT:AD:DP:GQ:PL 0/1:34,44:78:99:1046,0,793 16 11114192 rs72650660 C T 2503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-1.171;SOR=0.638 GT:AD:DP:GQ:PL 0/1:124,112:236:99:2532,0,2933 16 11154770 rs2286973 G A 4635.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4664,458,0 16 11362729 rs11640138 G A 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.858;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=-0.145;SOR=0.656 GT:AD:DP:GQ:PL 0/1:111,68:179:99:1595,0,2860 16 11367143 rs438289 G A 13772.8 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.43;SOR=0.787 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,310:310:99:1|1:11367143_G_A:13801,948,0 16 11367154 rs429744 C T 13730.8 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.15;SOR=0.794 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,311:311:99:1|1:11367143_G_A:13759,942,0 16 11367195 rs35598356 G C 3580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.276;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=2.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=1.858;SOR=0.838 GT:AD:DP:GQ:PL 0/1:157,147:304:99:3609,0,4006 16 11369855 rs2070923 G T 3099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=1.226;SOR=0.67 GT:AD:DP:GQ:PL 0/1:101,132:233:99:3128,0,2331 16 11374866 rs737008 G T 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.214;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=1.745;SOR=0.572 GT:AD:DP:GQ:PL 0/1:74,61:135:99:1463,0,1866 16 11439639 rs918737 T C 4859.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4888,456,0 16 11466599 rs6498188 T C 1202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.71;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=0.532;SOR=0.723 GT:AD:DP:GQ:PL 0/1:43,52:95:99:1231,0,899 16 11477757 rs4381620 C T 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.758;SOR=0.732 GT:AD:DP:GQ:PL 0/1:124,89:213:99:2097,0,3383 16 11484051 rs11642122 T G 6347.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6376,606,0 16 11484193 rs7193371 T A 2815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-1.815;SOR=0.728 GT:AD:DP:GQ:PL 0/1:139,123:262:99:2844,0,3510 16 11485515 rs7195518 A G 5190.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.297 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5219,507,0 16 11492383 rs4781081 T C 4067.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.9;SOR=1.476 GT:AD:DP:GQ:PL 1/1:0,120:120:99:4096,360,0 16 11540596 rs4359463 A C 7238.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7267,701,0 16 11540712 rs4500747 T C 7373.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7402,753,0 16 11541896 rs4238608 G A 6043.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6072,601,0 16 11542894 rs4467099 C T 6027.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6056,599,0 16 11544673 rs12932948 G A 3641.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.649 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3670,360,0 16 11553842 rs7206698 G C 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.452;SOR=0.643 GT:AD:DP:GQ:PL 0/1:108,84:192:99:2028,0,2812 16 11553883 rs35839588 C G 3046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-0.167;SOR=0.751 GT:AD:DP:GQ:PL 0/1:102,131:233:99:3075,0,2277 16 11554867 rs8050530 C T 3116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.934;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=2.492;SOR=0.73 GT:AD:DP:GQ:PL 0/1:136,132:268:99:3145,0,3126 16 11556121 rs4254342 A G 8342.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8371,857,0 16 11769948 rs1050068 C T 2411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.638;SOR=0.808 GT:AD:DP:GQ:PL 0/1:126,107:233:99:2440,0,3149 16 11769963 rs1050069 C T 2391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.359;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.361;SOR=0.784 GT:AD:DP:GQ:PL 0/1:119,107:226:99:2420,0,3073 16 11773662 rs3190321 C G 1735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.176;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=1.403;SOR=0.794 GT:AD:DP:GQ:PL 0/1:72,68:140:99:1764,0,1833 16 11785747 rs113940175 G C 3653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=4.14;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=-0.041;SOR=0.795 GT:AD:DP:GQ:PL 0/1:114,147:261:99:3682,0,2945 16 11836398 rs3743587 C G 2983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.391;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=8.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.48;ReadPosRankSum=-1.66;SOR=1.208 GT:AD:DP:GQ:PL 0/1:96,110:206:99:3012,0,2301 16 11852354 rs8743 A C 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=-0.017;SOR=0.665 GT:AD:DP:GQ:PL 0/1:37,30:67:99:630,0,872 16 11859341 rs7199993 A G 2590.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2619,255,0 16 11862376 rs34038330 G GA 908.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=0.755;QD=16.23;ReadPosRankSum=0.017;SOR=0.473 GT:AD:DP:GQ:PL 0/1:13,43:63:99:946,0,114 16 11940390 rs8052900 T C 999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-1.446;SOR=0.77 GT:AD:DP:GQ:PL 0/1:45,40:85:99:1028,0,1120 16 11969724 rs33657 G C 4059.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4088,399,0 16 11980478 rs201543703 T C 529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.76;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.974;SOR=0.7 GT:AD:DP:GQ:PL 0/1:23,21:44:99:558,0,597 16 12009279 rs424518 A G 5531.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.32;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5560,498,0 16 12009530 . CCCG C 226.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.854;ClippingRankSum=0;DP=333;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0;QD=0.77;ReadPosRankSum=1.954;SOR=0.526 GT:AD:DP:GQ:PL 0/1:269,27:296:99:264,0,10932 16 12060163 rs373496 A G 4048.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4077,400,0 16 12136954 rs1703492 A C 2764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.872;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0;QD=13.82;ReadPosRankSum=-0.854;SOR=0.673 GT:AD:DP:GQ:PL 0/1:89,111:200:99:2793,0,1971 16 12145683 rs373216147 CT C 315.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.771;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=3.625;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.958;QD=2.06;ReadPosRankSum=0.917;SOR=0.464 GT:AD:DP:GQ:PL 0/1:121,32:185:99:353,0,2605 16 12162969 rs1641843 A G 3099.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3128,326,0 16 12662420 rs2288423 C T 3660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0;DB;DP=371;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=1.932;SOR=0.812 GT:AD:DP:GQ:PL 0/1:204,167:371:99:3689,0,4797 16 12758966 rs1713480 T C 5484.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5513,519,0 16 12897578 rs3748976 G T 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.193;SOR=0.722 GT:AD:DP:GQ:PL 0/1:78,69:147:99:1606,0,1889 16 13002359 rs9938751 T C 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.78;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=4.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=1.574;SOR=1.011 GT:AD:DP:GQ:PL 0/1:99,78:177:99:1914,0,2318 16 13002387 rs72782632 C T 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.189;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.227;SOR=0.758 GT:AD:DP:GQ:PL 0/1:116,93:209:99:2333,0,2952 16 13297254 rs112510263 C G 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.334;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=4.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.77;ReadPosRankSum=-0.18;SOR=0.424 GT:AD:DP:GQ:PL 0/1:101,72:173:99:1546,0,2709 16 14026007 rs254942 G A 2300.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2329,222,0 16 14687144 rs75783314 A G 424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.39;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=0.352;SOR=0.929 GT:AD:DP:GQ:PL 0/1:25,19:44:99:453,0,558 16 14742400 rs11546303 T G 5062.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.944;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.091;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.06;ReadPosRankSum=-0.69;SOR=0.302 GT:AD:DP:GQ:PL 1/1:1,162:163:99:5091,479,0 16 14749080 . AT A 215.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.26;ClippingRankSum=0;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.57;ReadPosRankSum=0.89;SOR=0.687 GT:AD:DP:GQ:PL 0/1:62,22:93:99:253,0,1128 16 14819756 rs199559718 C T 942.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.59;QD=27.73;SOR=4.804 GT:AD:DP:GQ:PL 1/1:0,34:34:99:971,102,0 16 14858876 rs201587671 C T 165.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=23.07;QD=23.69;SOR=4.174 GT:AD:DP:GQ:PL 1/1:0,7:7:21:194,21,0 16 14969016 rs79100490 T A 2196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0;DB;DP=514;ExcessHet=3.0103;FS=5.731;MLEAC=1;MLEAF=0.5;MQ=44.98;MQRankSum=-5.908;QD=4.27;ReadPosRankSum=2.055;SOR=1.108 GT:AD:DP:GQ:PL 0/1:371,143:514:99:2225,0,8858 16 14972670 rs150370900 C A 1823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=45.62;MQRankSum=-8.768;QD=6.27;ReadPosRankSum=-2.433;SOR=0.71 GT:AD:DP:GQ:PL 0/1:190,101:291:99:1852,0,4808 16 14972694 rs375487 A G 1482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.85;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.5;MQ=46.32;MQRankSum=-10.117;QD=6.23;ReadPosRankSum=-1.889;SOR=0.877 GT:AD:DP:GQ:PL 0/1:158,80:238:99:1511,0,3804 16 14988868 rs200932882 A G 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.5;MQ=53.31;MQRankSum=0.948;QD=10.85;ReadPosRankSum=-0.9;SOR=0.527 GT:AD:DP:GQ:PL 0/1:108,100:208:99:2286,0,2459 16 14988965 rs200065269 C T 652.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.847;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.23;MQRankSum=-1.875;QD=10.7;ReadPosRankSum=-0.589;SOR=0.321 GT:AD:DP:GQ:PL 0/1:38,23:61:99:681,0,1441 16 14989420 rs77101519 C T 8063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.8;ClippingRankSum=0;DB;DP=741;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.07;MQRankSum=-1.272;QD=10.88;ReadPosRankSum=0.254;SOR=0.74 GT:AD:DP:GQ:PL 0/1:381,360:741:99:8092,0,9229 16 15091601 rs28545123 G C 166.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.82;MQRankSum=-4.875;QD=1.34;ReadPosRankSum=0.08;SOR=0.747 GT:AD:DP:GQ:PL 0/1:103,21:124:99:195,0,3151 16 15098047 rs11549900 C G 218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.05;MQRankSum=-1.172;QD=2.14;ReadPosRankSum=0.153;SOR=0.724 GT:AD:DP:GQ:PL 0/1:83,19:102:99:247,0,2189 16 15110077 rs4262938 C T 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.592;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=48.9;MQRankSum=-2.938;QD=12.28;ReadPosRankSum=1.225;SOR=0.781 GT:AD:DP:GQ:PL 0/1:71,77:148:99:1845,0,1560 16 15116625 rs1058637 G T 1251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.893;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.24;MQRankSum=-1.317;QD=16.26;ReadPosRankSum=-0.054;SOR=0.685 GT:AD:DP:GQ:PL 0/1:23,54:77:99:1280,0,381 16 15122812 rs112323280 C G 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.573;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.813;QD=4.24;ReadPosRankSum=0.33;SOR=0.9 GT:AD:DP:GQ:PL 0/1:152,51:203:99:888,0,3759 16 15128416 rs35811052 A G 583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.695;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.48;ReadPosRankSum=-1.723;SOR=0.854 GT:AD:DP:GQ:PL 0/1:51,27:78:99:612,0,1208 16 15129970 rs7200543 A G 2431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.762;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.543;SOR=0.865 GT:AD:DP:GQ:PL 0/1:86,96:182:99:2460,0,1857 16 15131962 rs1135999 A G 1017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.336;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=1.496;SOR=0.369 GT:AD:DP:GQ:PL 0/1:43,40:83:99:1046,0,1069 16 15131974 rs1136001 G T 861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=5.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.804;SOR=0.289 GT:AD:DP:GQ:PL 0/1:43,39:82:99:890,0,1128 16 15133889 rs14347 T G 921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.38;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=-1.004;SOR=0.498 GT:AD:DP:GQ:PL 0/1:28,39:67:99:950,0,654 16 15463612 rs200544639 G A 153.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.008;ClippingRankSum=-0;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.74;MQRankSum=1.01;QD=11.83;ReadPosRankSum=-1.512;SOR=0.859 GT:AD:DP:GQ:PL 0/1:6,7:13:99:182,0,143 16 15463892 rs199949658 A G 181.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.207;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=20.391;MLEAC=1;MLEAF=0.5;MQ=29.42;MQRankSum=-4.239;QD=2.27;ReadPosRankSum=-3.093;SOR=4.03 GT:AD:DP:GQ:PL 0/1:63,17:80:99:210,0,1558 16 15474924 rs140014347 G A 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=4.132;MLEAC=1;MLEAF=0.5;MQ=54.08;MQRankSum=-1.814;QD=8.98;ReadPosRankSum=-0.758;SOR=0.588 GT:AD:DP:GQ:PL 0/1:159,111:270:99:2452,0,3785 16 15501787 rs72774859 C T 1561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=-1.065;QD=10.77;ReadPosRankSum=-1.548;SOR=0.74 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1590,0,1880 16 15820863 rs16967494 C T 5868.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.052 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5897,597,0 16 15839034 rs1050113 G A 3918.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3947,384,0 16 15850204 rs2272554 A G 5446.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5475,537,0 16 15853596 rs2280764 C G 4284.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.96;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4313,390,0 16 15973654 rs8045082 G T 1504.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.87;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1533,167,0 16 16142079 rs60782127 G T 2208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=-1.077;SOR=0.649 GT:AD:DP:GQ:PL 0/1:140,107:247:99:2237,0,3272 16 16162019 rs35605 T C 4863.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4892,480,0 16 16205449 rs3851716 G A 4733.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4762,482,0 16 16271357 rs6416668 T C 6978.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7007,681,0 16 16271409 rs9924755 G A 2511.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=5.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.645;SOR=0.811 GT:AD:DP:GQ:PL 0/1:126,112:238:99:2540,0,3144 16 16272670 rs7500834 T C 4861.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4890,450,0 16 16278863 rs8058694 G T 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.66;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=4.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.63;ReadPosRankSum=1.013;SOR=0.914 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,62:129:99:0|1:16278863_G_T:2303,0,3391 16 16278869 rs8058696 G C 2202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.376;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.34;ReadPosRankSum=1.901;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,58:127:99:0|1:16278863_G_T:2231,0,3354 16 16281007 rs12931472 A G 1155.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.559;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.865;SOR=0.572 GT:AD:DP:GQ:PL 0/1:46,42:88:99:1184,0,1115 16 16291858 rs12929920 G C 1196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.185;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.09;SOR=0.912 GT:AD:DP:GQ:PL 0/1:80,49:129:99:1225,0,2045 16 16291871 rs9940089 G C 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.171;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=0.898;SOR=1.055 GT:AD:DP:GQ:PL 0/1:100,58:158:99:1537,0,2742 16 16291971 rs9940825 C T 3136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.011;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=8.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=2.562;SOR=0.835 GT:AD:DP:GQ:PL 0/1:176,137:313:99:3165,0,4226 16 16291983 rs9930886 A G 3444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.478;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.216;SOR=0.762 GT:AD:DP:GQ:PL 0/1:174,149:323:99:3473,0,3897 16 16306059 rs72664282 C T 300.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.553;ClippingRankSum=0;DB;DP=19;ExcessHet=3.0103;FS=14.88;MLEAC=1;MLEAF=0.5;MQ=31.96;MQRankSum=0;QD=15.83;ReadPosRankSum=0.052;SOR=1.032 GT:AD:DP:GQ:PL 0/1:5,14:19:99:329,0,108 16 16367702 rs200400220 T C 352.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.49;QD=29.4;SOR=5.136 GT:AD:DP:GQ:PL 1/1:0,12:12:36:381,36,0 16 17202777 rs924260 G A 3918.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0;DB;DP=352;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.305;SOR=0.556 GT:AD:DP:GQ:PL 0/1:176,175:351:99:3947,0,6459 16 17202801 rs34511974 G A 3553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=2.842;SOR=0.631 GT:AD:DP:GQ:PL 0/1:170,154:324:99:3582,0,6213 16 17228368 rs12708815 G A 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=1.338;SOR=0.745 GT:AD:DP:GQ:PL 0/1:145,119:264:99:2680,0,3419 16 18414947 . T C 1811.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.57;ClippingRankSum=0;DP=228;ExcessHet=3.0103;FS=13.058;MLEAC=1;MLEAF=0.5;MQ=39.86;MQRankSum=-5.346;QD=7.95;ReadPosRankSum=0.565;SOR=1.471 GT:AD:DP:GQ:PL 0/1:148,80:228:99:1840,0,3709 16 18532017 rs201036741 T C 1610.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.637;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.5;MQ=27.14;MQRankSum=-0.218;QD=22.07;ReadPosRankSum=2.982;SOR=0.368 GT:AD:DP:GQ:PL 0/1:13,60:73:99:1639,0,185 16 18823192 rs2291662 A G 5113.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.78;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5142,468,0 16 18823379 rs2606556 T C 5317.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5346,524,0 16 18839362 rs12445870 T C 3569.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3598,348,0 16 18839496 rs12448649 G C 3320.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.358 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3349,317,0 16 18849858 rs35168818 C T 2954.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2983,276,0 16 18861335 rs2650613 A G 4369.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4398,446,0 16 18875042 rs137863609 C A 669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=3.288;MLEAC=1;MLEAF=0.5;MQ=50.85;MQRankSum=-0.679;QD=9.71;ReadPosRankSum=-0.321;SOR=0.875 GT:AD:DP:GQ:PL 0/1:39,30:69:99:698,0,1108 16 18900862 rs374052744 A G 117.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.35;QD=29.26;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,4:4:12:145,12,0 16 18907429 rs143230109 G T 2191.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.23;QD=29.62;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2220,222,0 16 18908104 rs113608249 A AAT 2717.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.05;MQRankSum=0.77;QD=37.75;ReadPosRankSum=0.796;SOR=0.546 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2755,179,0 16 19041595 rs28583298 G A 3857.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3886,396,0 16 19049378 rs8043993 A G 3393.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.106 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3422,320,0 16 19056769 rs12051270 G A 2506.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.25;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2535,275,0 16 19067933 rs17854511 G A 4502.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4531,437,0 16 19085298 rs11074359 C T 4104.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.926 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4133,423,0 16 19195130 rs11541511 C T 3249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.542;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=1.182;SOR=0.68 GT:AD:DP:GQ:PL 0/1:172,147:319:99:3278,0,4563 16 19310092 rs1548450 T C 2115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-0.197;SOR=0.712 GT:AD:DP:GQ:PL 0/1:90,95:185:99:2144,0,2187 16 19471665 rs6497375 T C 1077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.376;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.103;SOR=0.678 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1106,0,942 16 19547747 rs226891 C G 4165.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=32.04;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4194,389,0 16 19548116 rs7190666 G A 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.095;SOR=0.545 GT:AD:DP:GQ:PL 0/1:85,78:163:99:1929,0,2216 16 19548290 rs7191012 G A 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.468;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=4.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=1.775;SOR=1.092 GT:AD:DP:GQ:PL 0/1:85,67:152:99:1655,0,2146 16 19592990 rs5816059 T TC 1245.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=16.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-1.587;SOR=0.091 GT:AD:DP:GQ:PL 0/1:61,57:118:99:1283,0,1520 16 19619602 rs11291600 CT C 506.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.775;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.56;ReadPosRankSum=-0.914;SOR=0.552 GT:AD:DP:GQ:PL 0/1:39,28:94:99:544,0,829 16 19680546 rs957676 T C 1877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.269;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.458;SOR=0.615 GT:AD:DP:GQ:PL 0/1:76,81:157:99:1906,0,1645 16 19800213 rs7191155 T C 1308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=0.89;SOR=0.941 GT:AD:DP:GQ:PL 0/1:74,61:135:99:1337,0,1789 16 19883364 rs61742688 G A 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.519;SOR=1.044 GT:AD:DP:GQ:PL 0/1:58,64:122:99:1740,0,1561 16 20043330 rs2147865 T C 2355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.747;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=1.86;SOR=0.715 GT:AD:DP:GQ:PL 0/1:110,91:201:99:2384,0,2634 16 20328685 rs1129818 T C 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.235;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=2.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=3.022;SOR=1.026 GT:AD:DP:GQ:PL 0/1:51,41:92:99:1034,0,1254 16 20360101 rs7193058 G A 9046.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9075,881,0 16 20370810 rs9652588 C T 8411.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.04;SOR=0.961 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,191:191:99:1|1:20370810_C_T:8440,575,0 16 20370816 rs9652589 C T 8475.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.32;SOR=1.05 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,187:187:99:1|1:20370810_C_T:8504,581,0 16 20376734 rs8052918 A G 4579.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4608,467,0 16 20376755 rs8054266 T C 4920.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4949,488,0 16 20441053 rs8062344 C G 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.638;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=2.614;MLEAC=1;MLEAF=0.5;MQ=58.05;MQRankSum=-4.585;QD=13.4;ReadPosRankSum=-2.528;SOR=0.499 GT:AD:DP:GQ:PL 0/1:85,94:179:99:2426,0,2344 16 20441084 rs8063682 T C 2288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.72;MLEAC=1;MLEAF=0.5;MQ=58.28;MQRankSum=-5.145;QD=11.39;ReadPosRankSum=-0.893;SOR=0.607 GT:AD:DP:GQ:PL 0/1:102,99:201:99:2317,0,2580 16 20448520 rs7499667 T C 3104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.289;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-3.126;QD=15.68;ReadPosRankSum=0.18;SOR=0.659 GT:AD:DP:GQ:PGT:PID:PL 0/1:114,84:198:99:0|1:20448520_T_C:3133,0,5042 16 20448650 rs149777385 G A 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=4.198;MLEAC=1;MLEAF=0.5;MQ=54.3;MQRankSum=1.175;QD=13.25;ReadPosRankSum=0.411;SOR=1.075 GT:AD:DP:GQ:PL 0/1:59,74:133:99:1791,0,1515 16 20471450 rs59292608 G A 3296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.172;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.56;MQRankSum=-3.418;QD=12.93;ReadPosRankSum=1.105;SOR=0.701 GT:AD:DP:GQ:PL 0/1:115,140:255:99:3325,0,2634 16 20476852 rs7187246 T C 3336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=53.77;MQRankSum=3.786;QD=9.79;ReadPosRankSum=2.835;SOR=0.621 GT:AD:DP:GQ:PL 0/1:196,145:341:99:3365,0,4836 16 20480818 rs28615302 T C 2103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.182;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.74;MQRankSum=-0.918;QD=16.18;ReadPosRankSum=-2.066;SOR=0.634 GT:AD:DP:GQ:PL 0/1:48,82:130:99:2132,0,1051 16 20488696 rs1700805 A G 943.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.648;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.5;MQ=38.11;MQRankSum=-2.276;QD=11.51;ReadPosRankSum=1.201;SOR=0.865 GT:AD:DP:GQ:PL 0/1:44,38:82:99:972,0,1108 16 20492000 rs146233716 A G 1857.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.191;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=49.48;MQRankSum=-12.519;QD=8.18;ReadPosRankSum=-1.286;SOR=0.658 GT:AD:DP:GQ:PL 0/1:153,74:227:99:1886,0,3893 16 20494408 rs1133607 C T 3457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.5;MQ=58.89;MQRankSum=-2.033;QD=10.14;ReadPosRankSum=-2.33;SOR=0.71 GT:AD:DP:GQ:PL 0/1:180,161:341:99:3486,0,4177 16 20552075 rs16970280 G T 3072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=-1.071;QD=9.98;ReadPosRankSum=-2.531;SOR=0.599 GT:AD:DP:GQ:PL 0/1:173,135:308:99:3101,0,4268 16 20554582 rs142632912 T G 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=9.179;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=19.969;MLEAC=1;MLEAF=0.5;MQ=47.67;MQRankSum=-8.574;QD=2.88;ReadPosRankSum=-1.206;SOR=2.286 GT:AD:DP:GQ:PL 0/1:155,32:187:99:566,0,3820 16 20570661 rs62035059 T C 4938.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.25;QD=33.37;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4967,444,0 16 20576048 rs112352583 C A 3315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.1;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.03;MQRankSum=-0.496;QD=11.8;ReadPosRankSum=-1.33;SOR=0.706 GT:AD:DP:GQ:PL 0/1:139,142:281:99:3344,0,3406 16 20638576 rs1692729 A T 2552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=1.117;SOR=0.512 GT:AD:DP:GQ:PL 0/1:78,112:190:99:2581,0,1658 16 20648702 rs151328 G A 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.75;ReadPosRankSum=-0.263;SOR=0.607 GT:AD:DP:GQ:PL 0/1:65,43:108:99:865,0,1548 16 20748331 rs11074471 C A 1984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.41;ReadPosRankSum=-0.987;SOR=0.843 GT:AD:DP:GQ:PL 0/1:147,89:236:99:2013,0,3910 16 20787391 rs377752221 C T 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.423;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.816;SOR=0.727 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1628,0,1405 16 20792188 rs5715 T C 5719.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5748,556,0 16 20793129 rs13306604 A T 763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.011;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-1.302;SOR=0.665 GT:AD:DP:GQ:PL 0/1:43,36:79:99:792,0,864 16 20796387 rs5716 G C 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.132;SOR=0.737 GT:AD:DP:GQ:PL 0/1:68,78:146:99:1877,0,1713 16 20809283 rs11648835 C A 1470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.58;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.023;SOR=0.672 GT:AD:DP:GQ:PL 0/1:68,61:129:99:1499,0,1893 16 20809965 rs201734023 G A 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.419;SOR=0.687 GT:AD:DP:GQ:PL 0/1:82,93:175:99:2296,0,2084 16 20810067 rs3213646 T C 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.159;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.043;SOR=0.705 GT:AD:DP:GQ:PL 0/1:102,95:197:99:2469,0,2466 16 20811681 rs2301771 C T 1760.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1789,180,0 16 20855309 rs9929443 A G 3016.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3045,294,0 16 20873767 rs7187522 T G 7385.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7414,725,0 16 20959918 rs2301620 G A 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.507;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.681;SOR=0.528 GT:AD:DP:GQ:PL 0/1:71,75:146:99:1845,0,1689 16 20966273 rs12924551 G A 2275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=1.674;SOR=0.831 GT:AD:DP:GQ:PL 0/1:116,96:212:99:2304,0,3102 16 20966362 rs34051490 T C 1768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.044;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-1.181;SOR=0.721 GT:AD:DP:GQ:PL 0/1:99,73:172:99:1797,0,2317 16 20975069 rs3743696 G A 2431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.477;SOR=0.573 GT:AD:DP:GQ:PL 0/1:105,100:205:99:2460,0,2805 16 20975303 rs3743697 A G 2256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.855;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.16;SOR=0.58 GT:AD:DP:GQ:PL 0/1:110,101:211:99:2285,0,2845 16 20975419 . G A 1536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.721;ClippingRankSum=0;DP=192;ExcessHet=3.0103;FS=5.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8;ReadPosRankSum=-0.919;SOR=0.795 GT:AD:DP:GQ:PL 0/1:121,71:192:99:1565,0,3439 16 20975522 rs3826156 A G 1861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.768;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=3.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=0.192;SOR=0.954 GT:AD:DP:GQ:PL 0/1:121,80:201:99:1890,0,2902 16 20976360 rs33928718 T G 3077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=3.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=1.324;SOR=0.631 GT:AD:DP:GQ:PL 0/1:106,124:230:99:3106,0,2628 16 20981162 rs12929546 T C 2533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.236;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.289;SOR=0.644 GT:AD:DP:GQ:PL 0/1:92,97:189:99:2562,0,2328 16 21008690 rs3115446 T C 6172.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.98;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6201,578,0 16 21045369 rs2112494 A G 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.474;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.402;SOR=0.641 GT:AD:DP:GQ:PL 0/1:42,60:102:99:1448,0,881 16 21051209 rs330150 G C 706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.84;ReadPosRankSum=-0.516;SOR=0.691 GT:AD:DP:GQ:PL 0/1:81,40:121:99:735,0,1956 16 21078693 rs861424 T G 5512.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.89;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5541,614,0 16 21082163 rs75686265 C T 515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-2.686;SOR=0.551 GT:AD:DP:GQ:PL 0/1:19,20:39:99:544,0,503 16 21136477 rs7191215 A G 2112.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2141,204,0 16 21185384 rs1046480 G A 1668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.89;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=0.566;SOR=0.665 GT:AD:DP:GQ:PL 0/1:70,71:141:99:1697,0,1565 16 21190853 rs1063087 A C 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.946;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=3.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=0.583;SOR=1.035 GT:AD:DP:GQ:PL 0/1:73,61:134:99:1712,0,1713 16 21272591 rs14122 G C 724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.541;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.14;ReadPosRankSum=0.313;SOR=0.642 GT:AD:DP:GQ:PL 0/1:54,35:89:99:753,0,1266 16 21286927 rs226045 A G 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-1.902;SOR=0.631 GT:AD:DP:GQ:PL 0/1:36,37:73:99:906,0,883 16 21413879 . C T 115.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.461;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=20.97;MQRankSum=-0.497;QD=5.79;ReadPosRankSum=0.861;SOR=0.392 GT:AD:DP:GQ:PL 0/1:12,8:20:99:144,0,234 16 21416094 rs144101135 G A 1270.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.97;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.215;MLEAC=1;MLEAF=0.5;MQ=31.06;MQRankSum=-0.23;QD=5.12;ReadPosRankSum=-0.372;SOR=0.495 GT:AD:DP:GQ:PL 0/1:177,71:248:99:1299,0,4558 16 21698988 rs34615076 CT C 214.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.198;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.9;ReadPosRankSum=0.175;SOR=0.641 GT:AD:DP:GQ:PL 0/1:54,20:98:99:252,0,1059 16 21730449 rs215901 C T 3373.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.35;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3402,357,0 16 21854922 rs187043751 A G 2222.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.82;QD=27.78;SOR=5.473 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2251,240,0 16 22019646 rs201044196 AG A 1295.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.656;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=9.204;MLEAC=1;MLEAF=0.5;MQ=56.71;MQRankSum=-6.147;QD=11.07;ReadPosRankSum=-1.006;SOR=1.659 GT:AD:DP:GQ:PL 0/1:72,45:117:99:1333,0,2340 16 22019729 . G GAGCACTCACTGTGGGCCTCGTGCGACAGTGTCAAACAATCCATGGACGAGACCGGACGTGCATCCC 793.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.353;ClippingRankSum=0;DP=149;ExcessHet=3.0103;FS=12.72;MLEAC=1;MLEAF=0.5;MQ=57.04;MQRankSum=-9.897;QD=5.63;ReadPosRankSum=-2.924;SOR=1.935 GT:AD:DP:GQ:PL 0/1:113,28:141:99:831,0,5421 16 22108284 rs10591498 AT A 366.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.11;ReadPosRankSum=-0.948;SOR=0.782 GT:AD:DP:GQ:PL 0/1:32,28:76:99:404,0,575 16 22161136 rs1991020 T C 7705.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7734,793,0 16 22269867 rs4783453 A G 8224.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8253,839,0 16 22545446 . C T 1787.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.047;ClippingRankSum=0;DP=210;ExcessHet=3.0103;FS=14.335;MLEAC=1;MLEAF=0.5;MQ=31.5;MQRankSum=0.676;QD=8.51;ReadPosRankSum=0.419;SOR=1.617 GT:AD:DP:GQ:PL 0/1:127,83:210:99:1816,0,2851 16 22826339 rs208951 A G 2932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.487;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=5.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.353;SOR=0.72 GT:AD:DP:GQ:PL 0/1:119,116:235:99:2961,0,2819 16 23079353 rs8047644 T C 4617.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.52;SOR=1.418 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4646,425,0 16 23098422 rs13339649 A G 1459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.229;SOR=0.674 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1488,0,1572 16 23117706 rs17740615 C T 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.478;SOR=0.705 GT:AD:DP:GQ:PL 0/1:62,67:129:99:1607,0,1507 16 23160238 rs184560422 A G 633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=1.13;SOR=0.596 GT:AD:DP:GQ:PL 0/1:23,25:48:99:662,0,590 16 23200761 rs5734 T C 2301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.943;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=2.881;SOR=0.821 GT:AD:DP:GQ:PL 0/1:93,101:194:99:2330,0,2020 16 23200848 rs5735 T C 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.272;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.961;SOR=0.77 GT:AD:DP:GQ:PL 0/1:77,82:159:99:2177,0,1846 16 23221183 rs5740 A G 1058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.153;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=1.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=0.36;SOR=0.811 GT:AD:DP:GQ:PL 0/1:27,48:75:99:1087,0,647 16 23360199 rs238547 T C 1771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.378;SOR=0.634 GT:AD:DP:GQ:PL 0/1:75,77:152:99:1800,0,1870 16 23457290 rs71379679 TA T 79.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.385;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.283;QD=1.27;ReadPosRankSum=-0.138;SOR=0.679 GT:AD:DP:GQ:PL 0/1:49,14:80:99:117,0,1072 16 23489711 rs1135045 C G 3673.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3702,383,0 16 23521643 rs1071685 G C 3050.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3079,324,0 16 23521750 rs2285522 T C 1477.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.84;SOR=2.687 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1506,135,0 16 23535680 rs1468138 A C 2913.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2942,311,0 16 23536684 rs6497671 T C 4625.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4654,458,0 16 23541223 rs2072061 G A 7282.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=1.113 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7311,723,0 16 23546561 rs2073951 G C 8924.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8953,852,0 16 23563501 rs7187920 C T 5732.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5761,581,0 16 23677006 rs35586 A G 1476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.021;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=1.417;SOR=0.829 GT:AD:DP:GQ:PL 0/1:54,66:120:99:1505,0,1158 16 23722280 rs56342512 G A 1263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.187;SOR=0.659 GT:AD:DP:GQ:PL 0/1:51,52:103:99:1292,0,1281 16 24166130 rs432998 T C 3095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.46;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=0.941;SOR=0.691 GT:AD:DP:GQ:PL 0/1:121,135:256:99:3124,0,2945 16 24202458 rs3729904 C T 1589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.032;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=0.745;SOR=0.789 GT:AD:DP:GQ:PL 0/1:103,73:176:99:1618,0,2463 16 24564879 rs72133882 GTA G 1477.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.461;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.24;ReadPosRankSum=0.288;SOR=0.738 GT:AD:DP:GQ:PL 0/1:27,46:73:99:1515,0,774 16 24788422 rs71156436 AGCAGCCACAGCC A 2311.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.196;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=5.768;MLEAC=1;MLEAF=0.5;MQ=61.42;MQRankSum=6.09;QD=14.45;ReadPosRankSum=0.516;SOR=0.569 GT:AD:DP:GQ:PL 0/1:93,67:160:99:2349,0,6050 16 24788645 rs11639856 T A 2290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.732;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=0.502;SOR=0.644 GT:AD:DP:GQ:PL 0/1:84,92:176:99:2319,0,1974 16 24801737 rs6497759 G A 2321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=3.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.065;SOR=0.503 GT:AD:DP:GQ:PL 0/1:145,97:242:99:2350,0,3739 16 24802325 rs3803716 C T 2305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.843;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=10.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.128;SOR=0.964 GT:AD:DP:GQ:PL 0/1:121,107:228:99:2334,0,3215 16 24816492 rs2059134 A G 1315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=0.549;SOR=0.636 GT:AD:DP:GQ:PL 0/1:84,55:139:99:1344,0,2176 16 24888646 rs11074656 T C 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.863;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=7.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=1.509;SOR=1.118 GT:AD:DP:GQ:PL 0/1:74,43:117:99:1095,0,1667 16 24902194 rs274081 T C 5590.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.338 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5619,540,0 16 24918048 rs17772929 C T 3157.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3186,324,0 16 25704145 rs2943336 A G 8999.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9028,891,0 16 27231740 rs34577370 G C 1922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.403;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-0.551;SOR=0.839 GT:AD:DP:GQ:PL 0/1:71,72:143:99:1951,0,1782 16 27456613 rs963154 G C 984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=0.715;SOR=0.446 GT:AD:DP:GQ:PL 0/1:55,46:101:99:1013,0,1376 16 27472772 rs2228248 C T 1313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.453;SOR=0.637 GT:AD:DP:GQ:PL 0/1:67,58:125:99:1342,0,1647 16 27474910 rs12919017 A G 749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.244;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.666;SOR=0.786 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,30:65:99:0|1:27474910_A_G:778,0,799 16 27475852 . C T 2320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.324;ClippingRankSum=0;DP=182;ExcessHet=3.0103;FS=4.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.102;SOR=0.678 GT:AD:DP:GQ:PL 0/1:89,93:182:99:2349,0,2080 16 27506825 rs232071 G A 1021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=6.036;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.59;SOR=1.454 GT:AD:DP:GQ:PL 0/1:38,43:81:99:1050,0,926 16 27692835 rs12923861 G A 2013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.53;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=1.15;SOR=0.703 GT:AD:DP:GQ:PL 0/1:74,85:159:99:2042,0,1849 16 27709825 rs12920169 C T 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.972;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=0.532;SOR=0.854 GT:AD:DP:GQ:PL 0/1:104,81:185:99:1823,0,2404 16 27720201 rs12930355 C T 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.266;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=4.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=1.223;SOR=1.058 GT:AD:DP:GQ:PL 0/1:87,72:159:99:1585,0,2001 16 27751895 rs149945532 C T 1957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=6.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.227;SOR=1.062 GT:AD:DP:GQ:PL 0/1:101,84:185:99:1986,0,2719 16 27752135 rs12447120 C T 1993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.083;SOR=0.729 GT:AD:DP:GQ:PL 0/1:85,82:167:99:2022,0,2292 16 27761040 rs61734902 C T 3498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.313;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=2.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.231;SOR=0.65 GT:AD:DP:GQ:PL 0/1:128,145:273:99:3527,0,3040 16 27772901 rs4787984 G A 4493.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.319 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4522,455,0 16 28123226 rs205384 G A 3523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.443;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=2.04;SOR=0.644 GT:AD:DP:GQ:PL 0/1:168,163:331:99:3552,0,3660 16 28354285 rs2411458 A C 840.77 SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.93;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=38.482;MLEAC=1;MLEAF=0.5;MQ=49.03;MQRankSum=5.554;QD=4.89;ReadPosRankSum=-9.429;SOR=0.057 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,112:172:99:0|1:28354285_A_C:869,0,2302 16 28354287 . G GGAC 831.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.693;ClippingRankSum=0;DP=164;ExcessHet=3.0103;FS=34.491;MLEAC=1;MLEAF=0.5;MQ=49.17;MQRankSum=5.488;QD=5.1;ReadPosRankSum=-9.522;SOR=0.063 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,103:163:99:0|1:28354285_A_C:869,0,2302 16 28354288 . AGC A 790.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.648;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=28.556;MLEAC=1;MLEAF=0.5;MQ=47.59;MQRankSum=4.108;QD=6.88;ReadPosRankSum=-8.914;SOR=0.058 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,56:115:99:0|1:28354285_A_C:828,0,2312 16 28354353 rs1794256 T G 817.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.65;QD=38.94;SOR=6.184 GT:AD:DP:GQ:PL 1/1:0,21:21:63:846,63,0 16 28354457 rs201118010 G A 2948.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.83;QD=29.49;SOR=5.933 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2977,300,0 16 28374161 rs201918842 G C 7518.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.6;QD=29.72;SOR=2.078 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7547,759,0 16 28403471 . C A 286.77 SNP_MQ_filter AC=2;AF=1;AN=2;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.01;QD=26.07;SOR=4.977 GT:AD:DP:GQ:PL 1/1:0,11:11:33:315,33,0 16 28488924 rs201206239 C T 2365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.397;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.146;SOR=0.744 GT:AD:DP:GQ:PL 0/1:93,91:184:99:2394,0,2254 16 28506872 rs149271 A G 6118.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.72;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6147,561,0 16 28507397 rs148114931 TGGGACAGCCTCAGGAGGGGAGGAGGCC T 4724.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.011;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=64.42;MQRankSum=3.194;QD=26.54;ReadPosRankSum=0.456;SOR=0.866 GT:AD:DP:GQ:PL 1/1:9,169:178:99:4762,296,0 16 28507644 rs180743 C G 8650.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8679,805,0 16 28508048 rs180744 A G 11606.8 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.67;SOR=0.867 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,272:272:99:1|1:28508048_A_G:11635,819,0 16 28508069 rs151174 C T 10841.8 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.55;SOR=0.894 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,238:238:99:1|1:28508048_A_G:10870,752,0 16 28508447 rs40831 A G 7773.77 PASS AC=2;AF=1;AN=2;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.22;SOR=0.257 GT:AD:DP:GQ:PL 1/1:1,248:249:99:7802,719,0 16 28508716 rs40832 T C 8150.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8179,791,0 16 28509509 rs61738759 G A 4850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.478;ClippingRankSum=0;DB;DP=406;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.829;SOR=0.745 GT:AD:DP:GQ:PL 0/1:204,201:405:99:4879,0,4943 16 28513403 rs181206 A G 5590.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5619,561,0 16 28603335 rs762634 T C 7839.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.57;QD=44.54;SOR=1.06 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,176:176:99:1|1:28603335_T_C:7868,532,0 16 28603342 rs710410 A G 7890.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.1;QD=44.58;SOR=1.013 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,177:177:99:1|1:28603335_T_C:7919,535,0 16 28603393 rs27742 T C 6906.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.29;QD=34.71;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6935,597,0 16 28603655 rs1059491 T G 16013.8 PASS AC=2;AF=1;AN=2;DB;DP=521;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=30.74;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,521:521:99:16042,1562,0 16 28604686 rs3743963 A G 11499.8 PASS AC=2;AF=1;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=29.19;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,394:394:99:11528,1180,0 16 28607228 rs1690407 A G 4889.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.66;QD=44.86;SOR=2.964 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,109:109:99:1|1:28607228_A_G:4918,337,0 16 28607232 rs1136703 A G 4737.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.33;QD=44.7;SOR=2.685 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,106:106:99:1|1:28607228_A_G:4766,322,0 16 28617128 rs6839 T C 8525.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.39;QD=28.32;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,301:301:99:8554,901,0 16 28617361 rs41278162 G A 5220.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.67;QD=23.95;SOR=3.115 GT:AD:DP:GQ:PL 1/1:0,218:218:99:5249,629,0 16 28617485 rs1801030 C T 8389.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.51;QD=29.44;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8418,854,0 16 28617514 rs9282861 C T 8877.77 PASS AC=2;AF=1;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.01;QD=29.11;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,305:305:99:8906,913,0 16 28617552 rs3176926 C G 10838.8 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.59;QD=43.7;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,248:248:99:1|1:28617552_C_G:10867,749,0 16 28617574 rs4149394 C T 10708.8 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.29;QD=44.81;SOR=0.903 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,239:239:99:1|1:28617552_C_G:10737,722,0 16 28618065 rs3020806 A T 10651.8 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.48;QD=46.51;SOR=1.189 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,229:229:99:1|1:28618065_A_T:10680,716,0 16 28618068 rs74752114 G A 10829.8 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.75;QD=45.89;SOR=1.159 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,236:236:99:1|1:28618065_A_T:10858,734,0 16 28618071 rs3020805 C G 10768.8 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.86;QD=45.06;SOR=1.141 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,239:239:99:1|1:28618065_A_T:10797,728,0 16 28619911 rs1126447 T C 24167.8 PASS AC=2;AF=1;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.96;QD=45.09;SOR=1.107 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,536:536:99:1|1:28619911_T_C:24196,1661,0 16 28619920 rs1126446 A G 24783.8 PASS AC=2;AF=1;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.09;QD=44.26;SOR=1.087 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,560:560:99:1|1:28619911_T_C:24812,1712,0 16 28620025 rs12924616 T C 79.77 SNP_QD_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.271;ClippingRankSum=0;DB;DP=735;ExcessHet=3.0103;FS=39.469;MLEAC=1;MLEAF=0.5;MQ=55.24;MQRankSum=-12.833;QD=0.11;ReadPosRankSum=-5.745;SOR=6.695 GT:AD:DP:GQ:PL 0/1:667,67:734:99:108,0,18376 16 28734477 rs202014506 G T 4556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.454;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=49.45;MQRankSum=-0.88;QD=13.17;ReadPosRankSum=0.193;SOR=0.742 GT:AD:DP:GQ:PL 0/1:172,174:346:99:4585,0,5077 16 28734759 rs186557331 G A 142.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.681;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=83.667;MLEAC=1;MLEAF=0.5;MQ=40.31;MQRankSum=-10.539;QD=0.5;ReadPosRankSum=0.16;SOR=6.764 GT:AD:DP:GQ:PL 0/1:247,40:287:99:171,0,6681 16 28777728 . G A 36.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=22;MQRankSum=-0;QD=7.35;ReadPosRankSum=0.253;SOR=1.022 GT:AD:DP:GQ:PL 0/1:2,3:5:38:65,0,38 16 28842311 rs4344749 A G 2607.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2636,246,0 16 28844365 rs62036657 G A 3764.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3793,372,0 16 28846866 rs55719896 G A 6695.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6724,647,0 16 28847246 rs12928404 T C 4241.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.38;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4270,393,0 16 28855727 rs4788099 A G 6264.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6293,606,0 16 28883241 rs7498665 A G 2414.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2443,207,0 16 28883841 rs62037369 C T 3110.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3139,299,0 16 28898793 rs6565259 T C 6163.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6192,619,0 16 28914209 . C T 3809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.88;ClippingRankSum=0;DP=343;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.167;SOR=0.795 GT:AD:DP:GQ:PL 0/1:176,166:342:99:3838,0,4292 16 29395453 rs71387660 A G 2993.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.278;ClippingRankSum=0;DB;DP=426;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=51.25;MQRankSum=-17.431;QD=7.06;ReadPosRankSum=0.84;SOR=0.743 GT:AD:DP:GQ:PL 0/1:283,141:424:99:3022,0,7474 16 29401299 . C G 7745.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.473;ClippingRankSum=0;DP=431;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.5;MQ=37.99;MQRankSum=-6.439;QD=17.97;ReadPosRankSum=1.406;SOR=0.698 GT:AD:DP:GQ:PGT:PID:PL 0/1:229,202:431:99:0|1:29401299_C_G:7774,0,10285 16 29401300 . A T 7745.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DP=426;ExcessHet=3.0103;FS=4.923;MLEAC=1;MLEAF=0.5;MQ=37.69;MQRankSum=-6.324;QD=18.18;ReadPosRankSum=1.171;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:225,201:426:99:0|1:29401299_C_G:7774,0,10285 16 29472811 rs150339073 A G 118.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.392;ClippingRankSum=0;DB;DP=19;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.05;MQRankSum=1.793;QD=6.25;ReadPosRankSum=0.505;SOR=0.148 GT:AD:DP:GQ:PL 0/1:14,5:19:99:147,0,513 16 29708350 rs9932770 A G 7169.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7198,743,0 16 29790864 rs235636 G A 5273.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5302,546,0 16 29791561 rs235637 T G 6012.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6041,567,0 16 29791721 rs235638 G C 5575.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.39;SOR=1.343 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5604,501,0 16 29809673 rs72422700 ATTTC A 3007.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.641;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.09;ReadPosRankSum=-2.181;SOR=0.519 GT:AD:DP:GQ:PL 0/1:96,80:176:99:3045,0,3790 16 29811319 rs235648 C T 4973.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5002,513,0 16 29814234 rs2450399 G A 4652.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4681,474,0 16 29825126 rs11150573 T C 7356.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.75;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,218:218:99:7385,655,0 16 29857316 rs4787480 G A 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=0.287;SOR=0.782 GT:AD:DP:GQ:PL 0/1:66,67:133:99:1716,0,1769 16 29908433 rs11649499 C G 5192.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=1.289 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5221,513,0 16 29994922 rs3814883 C T 11367.8 PASS AC=2;AF=1;AN=2;DB;DP=405;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,404:404:99:11396,1205,0 16 29998200 rs4077410 A G 8724.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8753,846,0 16 30000901 rs3814881 G A 5408.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5437,507,0 16 30018500 rs3935873 C T 8504.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8533,866,0 16 30021402 rs1140239 C T 7291.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7320,697,0 16 30036535 . C T 1837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.129;ClippingRankSum=0;DP=167;ExcessHet=3.0103;FS=7.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.346;SOR=1.207 GT:AD:DP:GQ:PL 0/1:90,75:165:99:1866,0,2314 16 30037128 rs11544328 A C 3835.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.144 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3864,393,0 16 30080931 rs144693278 C T 2696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.866;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.242;SOR=0.854 GT:AD:DP:GQ:PL 0/1:140,116:256:99:2725,0,3841 16 30098189 rs3833842 GTGA G 5586.73 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.3;QD=42.32;SOR=1.437 GT:AD:DP:GQ:PL 1/1:0,132:132:99:5624,398,0 16 30119525 rs8061772 C A 4101.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.993;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.76;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.29;ReadPosRankSum=-0.457;SOR=0.785 GT:AD:DP:GQ:PL 1/1:1,144:145:99:4130,423,0 16 30212154 . A G 795.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.089;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.3;MQRankSum=0.844;QD=12.43;ReadPosRankSum=-0.737;SOR=0.392 GT:AD:DP:GQ:PL 0/1:38,26:64:99:824,0,1280 16 30393660 rs4787643 G A 3676.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3705,351,0 16 30408711 rs143011040 A G 2287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.004;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.785;SOR=0.746 GT:AD:DP:GQ:PL 0/1:93,91:184:99:2316,0,2233 16 30408765 rs12921440 C T 6385.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6414,630,0 16 30410445 rs4788413 C T 5084.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5113,499,0 16 30505513 rs4350585 A G 4418.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.1;SOR=1.392 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,113:113:99:1|1:30505512_C_T:4447,340,0 16 30510571 rs1557672 C T 1935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.75;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.885;SOR=0.776 GT:AD:DP:GQ:PL 0/1:89,75:164:99:1964,0,2226 16 30518041 rs2230433 G C 1372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.836;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.778;SOR=0.501 GT:AD:DP:GQ:PL 0/1:50,58:108:99:1401,0,1390 16 30518096 rs2230434 C T 1655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.392;SOR=0.73 GT:AD:DP:GQ:PL 0/1:69,77:146:99:1684,0,1629 16 30536672 rs3751847 A G 3706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.035;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.343;SOR=0.67 GT:AD:DP:GQ:PL 0/1:147,153:300:99:3735,0,3515 16 30536918 rs10871453 C G 3072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.196;SOR=0.739 GT:AD:DP:GQ:PL 0/1:153,127:280:99:3101,0,4057 16 30718873 rs72793372 C T 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=2.262;SOR=0.495 GT:AD:DP:GQ:PL 0/1:97,84:181:99:2014,0,2496 16 30724070 rs4889500 G T 4665.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4694,496,0 16 30734963 rs4889502 C A 7258.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.27;ReadPosRankSum=-0.63;SOR=0.318 GT:AD:DP:GQ:PL 1/1:1,247:248:99:7287,732,0 16 30770950 rs62622830 T C 2747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.423;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=1.029;SOR=0.72 GT:AD:DP:GQ:PL 0/1:140,108:248:99:2776,0,3574 16 30779716 rs7195142 A G 5025.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5054,507,0 16 30780828 rs4889506 A G 6808.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.948 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6837,678,0 16 30794535 . C G 4606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.869;ClippingRankSum=0;DP=332;ExcessHet=3.0103;FS=0.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=0.752;SOR=0.761 GT:AD:DP:GQ:PL 0/1:159,173:332:99:4635,0,4173 16 30964940 rs9926903 A G 7880.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7909,744,0 16 30996795 rs79974799 C T 2074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.11;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.291;SOR=0.717 GT:AD:DP:GQ:PL 0/1:88,87:175:99:2103,0,2247 16 30996871 rs12443808 C G 2852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.226;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.59;ReadPosRankSum=2.253;SOR=0.801 GT:AD:DP:GQ:PGT:PID:PL 0/1:96,76:172:99:0|1:30996871_C_G:2881,0,3723 16 30996872 rs12443627 G C 2852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.468;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.49;ReadPosRankSum=2.365;SOR=0.783 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,76:173:99:0|1:30996871_C_G:2881,0,3723 16 30999142 rs9938550 A G 2135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.823;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=2.002;SOR=0.864 GT:AD:DP:GQ:PL 0/1:83,79:162:99:2164,0,2016 16 30999198 rs17849880 C T 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-1.005;SOR=0.773 GT:AD:DP:GQ:PL 0/1:97,80:177:99:2031,0,2657 16 30999462 rs2305880 T C 2195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.918;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.135;SOR=0.828 GT:AD:DP:GQ:PL 0/1:113,87:200:99:2224,0,2666 16 31004169 rs17855121 T C 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.695;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.264;SOR=0.68 GT:AD:DP:GQ:PL 0/1:55,63:118:99:1407,0,1128 16 31004812 rs12445568 T C 1341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.21;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.874;SOR=0.584 GT:AD:DP:GQ:PL 0/1:71,64:135:99:1370,0,1728 16 31072909 rs8046978 G A 4440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.768;ClippingRankSum=0;DB;DP=414;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.948;SOR=0.814 GT:AD:DP:GQ:PL 0/1:218,195:413:99:4469,0,5782 16 31075708 rs2032917 C G 10144.8 PASS AC=2;AF=1;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,315:315:99:10173,944,0 16 31090407 rs35713203 G C 3642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.882;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=10.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-1.026;SOR=0.747 GT:AD:DP:GQ:PL 0/1:184,143:327:99:3671,0,4590 16 31091209 rs3751855 T C 4263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.169;SOR=0.619 GT:AD:DP:GQ:PL 0/1:157,181:338:99:4292,0,3787 16 31092075 rs7196726 G A 2345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=0.058;SOR=0.705 GT:AD:DP:GQ:PL 0/1:153,102:255:99:2374,0,4048 16 31096164 rs7199949 G C 4207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.603;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=4.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=-1.232;SOR=0.724 GT:AD:DP:GQ:PL 0/1:130,145:275:99:4236,0,3558 16 31141826 rs1549295 A G 6383.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6412,597,0 16 31141880 rs1549294 A G 5800.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.136;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=0.995;SOR=0.715 GT:AD:DP:GQ:PL 1/1:2,184:186:99:5829,509,0 16 31142271 rs17855606 A G 5579.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.21;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5608,504,0 16 31143993 rs45619735 C T 12435.8 PASS AC=2;AF=1;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,410:410:99:12464,1228,0 16 31153105 rs1549300 A G 5477.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5506,498,0 16 31154146 rs1549299 G A 7511.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.52;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7540,693,0 16 31193942 rs741810 C A 1812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=1.957;SOR=0.417 GT:AD:DP:GQ:PL 0/1:88,77:165:99:1841,0,2298 16 31230463 rs7186832 C T 2282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=1.012;SOR=0.795 GT:AD:DP:GQ:PL 0/1:117,100:217:99:2311,0,2937 16 31273129 rs3764327 T C 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.153;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-1.966;SOR=0.654 GT:AD:DP:GQ:PL 0/1:41,50:91:99:1133,0,859 16 31289396 rs1143680 T C 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.782;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.283;SOR=0.912 GT:AD:DP:GQ:PL 0/1:88,82:170:99:2063,0,2154 16 31342608 rs7188189 T C 1622.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.5;SOR=2.872 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1651,177,0 16 31367318 rs2230424 T C 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.682;SOR=0.623 GT:AD:DP:GQ:PL 0/1:54,61:115:99:1373,0,1256 16 31371674 rs2230428 G A 1675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.678;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-2.125;SOR=0.751 GT:AD:DP:GQ:PL 0/1:70,70:140:99:1704,0,1659 16 31384554 rs2070896 T C 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.294;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.34;ReadPosRankSum=-0.159;SOR=0.959 GT:AD:DP:GQ:PL 0/1:35,35:70:99:1032,0,888 16 31422429 rs12444660 T C 11051.8 PASS AC=2;AF=1;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.942 GT:AD:DP:GQ:PL 1/1:0,365:365:99:11080,1094,0 16 31447333 . G T 4236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0;DP=345;ExcessHet=3.0103;FS=0.39;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.019;SOR=0.739 GT:AD:DP:GQ:PL 0/1:168,176:344:99:4265,0,4093 16 31476458 rs11150624 C T 3319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.939;SOR=0.736 GT:AD:DP:GQ:PL 0/1:133,136:269:99:3348,0,3385 16 31488916 rs10596 C G 2818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.026;SOR=0.619 GT:AD:DP:GQ:PL 0/1:106,113:219:99:2847,0,2660 16 31926619 rs3850114 G A 2258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.007;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.67;ReadPosRankSum=0.409;SOR=0.808 GT:AD:DP:GQ:PL 0/1:65,89:154:99:2287,0,1452 16 32265022 rs149357881 G C 17824.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.08;ClippingRankSum=0;DB;DP=1447;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.5;MQ=49.91;MQRankSum=-1.613;QD=12.32;ReadPosRankSum=0.041;SOR=0.862 GT:AD:DP:GQ:PL 0/1:705,742:1447:99:17853,0,16695 16 32265727 rs62043559 T C 3179.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=18.482;ClippingRankSum=0;DB;DP=698;ExcessHet=3.0103;FS=12.371;MLEAC=1;MLEAF=0.5;MQ=55.09;MQRankSum=-22.151;QD=4.58;ReadPosRankSum=-0.818;SOR=1.68 GT:AD:DP:GQ:PL 0/1:559,136:695:99:3208,0,14398 16 46655210 rs6598679 A G 5999.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=28.98;SOR=0.913 GT:AD:DP:GQ:PL 1/1:0,207:209:99:6028,621,0 16 46696284 rs168745 G A 6261.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6290,603,0 16 46702984 rs185098674 GA G 988.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.8;QD=8.52;ReadPosRankSum=0.921;SOR=0.558 GT:AD:DP:GQ:PL 0/1:62,54:121:99:1026,0,1450 16 46708574 . TA T 237.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.425;QD=2.9;ReadPosRankSum=-1.067;SOR=0.914 GT:AD:DP:GQ:PL 0/1:63,19:95:99:275,0,1319 16 46723598 rs33994299 T C 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.086;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.3;ReadPosRankSum=-0.107;SOR=1.338 GT:AD:DP:GQ:PL 0/1:30,40:70:99:1239,0,699 16 46731413 rs34343511 T C 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=7.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.78;ReadPosRankSum=0.435;SOR=0.267 GT:AD:DP:GQ:PL 0/1:30,72:102:99:1740,0,670 16 46773999 rs28407821 C A 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=0.807;SOR=0.636 GT:AD:DP:GQ:PL 0/1:71,64:135:99:1328,0,1639 16 47732512 rs35641157 C CT 61.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.414;ClippingRankSum=-0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=5.61;ReadPosRankSum=-0.321;SOR=0.593 GT:AD:DP:GQ:PL 0/1:5,6:14:70:99,0,70 16 48122582 rs7193955 G A 5643.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5672,590,0 16 48164777 rs12149826 T C 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.613;SOR=0.819 GT:AD:DP:GQ:PL 0/1:52,63:115:99:1510,0,1126 16 48201432 rs16945916 T C 3696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.598;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=1.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.47;SOR=0.767 GT:AD:DP:GQ:PL 0/1:136,145:281:99:3725,0,3254 16 48204078 rs61739606 T A 1353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.191;SOR=0.401 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1382,0,1912 16 48227862 rs11866251 G A 1293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=7.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=-0.192;SOR=1.279 GT:AD:DP:GQ:PL 0/1:77,61:138:99:1322,0,1797 16 48242379 rs17822471 G A 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=1.064;SOR=1.054 GT:AD:DP:GQ:PL 0/1:76,69:145:99:1486,0,1897 16 48248918 rs8047091 T C 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.167;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.18;QD=10.4;ReadPosRankSum=0.04;SOR=0.742 GT:AD:DP:GQ:PL 0/1:69,51:120:99:1276,0,1762 16 48248949 rs200308896 T TA 918.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.124;QD=9.88;ReadPosRankSum=-0.85;SOR=0.755 GT:AD:DP:GQ:PL 0/1:51,42:93:99:956,0,1112 16 48292513 rs16946038 A G 765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.219;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.42;ReadPosRankSum=-1.047;SOR=0.372 GT:AD:DP:GQ:PL 0/1:53,38:91:99:794,0,1511 16 48329918 rs5816590 TC T 1155.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.631;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-1.114;SOR=1.022 GT:AD:DP:GQ:PL 0/1:53,43:96:99:1193,0,1491 16 49670390 rs3803667 A G 11016.8 PASS AC=2;AF=1;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,362:362:99:11045,1086,0 16 49672520 rs3803665 A G 8246.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8275,826,0 16 50069312 rs2041918 C G 523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.592;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-1.903;SOR=0.76 GT:AD:DP:GQ:PL 0/1:28,24:52:99:552,0,640 16 50100274 rs6500280 G C 2698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=6.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.146;SOR=0.666 GT:AD:DP:GQ:PL 0/1:106,103:209:99:2727,0,2862 16 50106594 rs2287197 T C 1010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.704;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-1.752;SOR=0.65 GT:AD:DP:GQ:PL 0/1:40,44:84:99:1039,0,881 16 50109478 rs12931497 G A 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.066;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-0.775;SOR=0.689 GT:AD:DP:GQ:PL 0/1:46,61:107:99:1445,0,1020 16 50117828 rs5816672 CT C 388.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.514;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.076;QD=5.8;ReadPosRankSum=-0.511;SOR=1.199 GT:AD:DP:GQ:PL 0/1:42,25:80:99:426,0,834 16 50120122 rs2287196 C T 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.153;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=4.978;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.634;SOR=0.336 GT:AD:DP:GQ:PL 0/1:51,63:114:99:1434,0,1354 16 50251590 rs3887556 G A 1988.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2017,204,0 16 50261735 rs4624170 C T 3420.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.35 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3449,331,0 16 50326661 rs8051594 A G 7302.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7331,761,0 16 50345710 rs56388837 GCC G 120.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.07;ClippingRankSum=-0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.72;MQRankSum=-0;QD=8.62;ReadPosRankSum=3.44;SOR=0.412 GT:AD:DP:GQ:PL 0/1:8,6:14:99:158,0,154 16 50368663 rs1062348 G A 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.762;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=0.812;QD=10.48;ReadPosRankSum=-0.071;SOR=0.813 GT:AD:DP:GQ:PL 0/1:114,94:208:99:2209,0,2725 16 50709723 rs6596 G A 1237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=6.996;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.46;ReadPosRankSum=-0.485;SOR=0.749 GT:AD:DP:GQ:PL 0/1:106,60:166:99:1266,0,2499 16 50744624 rs2066842 C T 6153.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.91;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6182,562,0 16 50745199 rs2066843 C T 7379.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7408,699,0 16 51171175 rs4614723 C T 6639.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6668,688,0 16 51173559 rs1965024 G A 2461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.624;SOR=0.674 GT:AD:DP:GQ:PL 0/1:100,109:209:99:2490,0,2369 16 52473263 rs9925256 A G 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.006;SOR=0.626 GT:AD:DP:GQ:PL 0/1:92,95:189:99:2185,0,2239 16 53191470 rs12597487 T C 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.452;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-1.866;SOR=0.972 GT:AD:DP:GQ:PL 0/1:68,41:109:99:1011,0,1803 16 53283966 rs8052283 G A 843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.471;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=0.881;SOR=1.127 GT:AD:DP:GQ:PL 0/1:29,34:63:99:872,0,679 16 53325691 rs1894903 G A 633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.985;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.651;SOR=1.063 GT:AD:DP:GQ:PL 0/1:36,25:61:99:662,0,833 16 53326860 rs2287078 G A 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=5.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=1.662;SOR=0.671 GT:AD:DP:GQ:PL 0/1:75,82:157:99:1837,0,1790 16 53341748 rs6499548 T G 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.345;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.312;SOR=0.532 GT:AD:DP:GQ:PL 0/1:92,79:171:99:1913,0,2178 16 53358439 rs3743771 A G 1401.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.523;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.736;SOR=0.638 GT:AD:DP:GQ:PL 0/1:72,55:127:99:1430,0,1733 16 53485655 . T C 1177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.848;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-2.259;SOR=0.859 GT:AD:DP:GQ:PL 0/1:58,50:108:99:1206,0,1306 16 53639438 rs3213758 C T 1182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.29;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=1.322;SOR=0.814 GT:AD:DP:GQ:PL 0/1:70,57:127:99:1211,0,1638 16 53656275 rs113083177 CA C 220.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.962;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.336;QD=1.35;ReadPosRankSum=-0.354;SOR=0.771 GT:AD:DP:GQ:PL 0/1:130,33:204:99:258,0,2935 16 53671754 rs2111119 C T 1337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=1.37;SOR=0.544 GT:AD:DP:GQ:PL 0/1:38,56:94:99:1366,0,887 16 54318528 rs1450355 A G 7389.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7418,714,0 16 55361493 rs31082 C T 2035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.142;SOR=0.879 GT:AD:DP:GQ:PL 0/1:97,83:180:99:2064,0,2478 16 55363238 rs31087 G A 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.722;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.589;SOR=0.616 GT:AD:DP:GQ:PL 0/1:98,81:179:99:1846,0,2628 16 55519535 rs1132896 G C 2264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.673;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-0.258;SOR=0.709 GT:AD:DP:GQ:PL 0/1:86,89:175:99:2293,0,2194 16 55519607 rs1053605 C T 2717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.945;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-2.288;SOR=0.67 GT:AD:DP:GQ:PL 0/1:85,112:197:99:2746,0,1887 16 55523705 rs243849 T C 7661.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7690,756,0 16 55527113 rs2287074 G A 5800.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5829,620,0 16 55536727 rs14070 C T 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-1.518;SOR=0.513 GT:AD:DP:GQ:PL 0/1:53,75:128:99:1786,0,1307 16 55562466 rs837550 G A 3309.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.295 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3338,333,0 16 55731835 rs5569 G A 4335.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.97;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4364,465,0 16 55731946 rs998424 G A 3591.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3620,351,0 16 55735842 rs139680023 T A 428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.92;ReadPosRankSum=0.806;SOR=0.732 GT:AD:DP:GQ:PL 0/1:40,22:62:99:457,0,1095 16 55844927 rs2302722 A C 1629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.861;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.14;ReadPosRankSum=-0.71;SOR=0.519 GT:AD:DP:GQ:PL 0/1:18,83:101:99:1658,0,188 16 55883618 rs2160276 T C 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.951;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.178;SOR=0.731 GT:AD:DP:GQ:PL 0/1:96,78:174:99:1914,0,2252 16 55905636 rs3859108 A G 5252.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5281,520,0 16 55907811 rs2397965 C T 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.609;SOR=0.59 GT:AD:DP:GQ:PL 0/1:127,95:222:99:2163,0,3270 16 56368689 rs1065375 C T 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.084;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=1.754;SOR=0.556 GT:AD:DP:GQ:PL 0/1:90,75:165:99:1652,0,2090 16 56441862 rs2920704 A G 4383.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.394 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4412,438,0 16 56485554 rs11076155 C G 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.075;SOR=0.898 GT:AD:DP:GQ:PL 0/1:78,68:146:99:1557,0,1867 16 56548501 rs4784677 C T 4669.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4698,494,0 16 56601720 rs666636 A G 5540.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.97;SOR=0.976 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,126:126:99:1|1:56601720_A_G:5569,379,0 16 56601722 rs666647 T C 5540.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.05;SOR=0.963 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,123:123:99:1|1:56601720_A_G:5569,379,0 16 56602798 rs11643815 G A 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.794;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.59;ReadPosRankSum=-0.453;SOR=0.913 GT:AD:DP:GQ:PL 0/1:83,43:126:99:984,0,1974 16 56660816 rs72818417 G A 4510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.563;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.134;SOR=0.747 GT:AD:DP:GQ:PL 0/1:207,193:400:99:4539,0,5321 16 56660841 rs72818418 C T 4274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=3.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=0.215;SOR=0.863 GT:AD:DP:GQ:PL 0/1:212,186:398:99:4303,0,5128 16 56667242 rs55963173 T A 2956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.878;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-1.223;QD=9.42;ReadPosRankSum=-1.642;SOR=0.863 GT:AD:DP:GQ:PL 0/1:189,125:314:99:2985,0,4824 16 56667282 rs1827210 C A 16721.8 PASS AC=2;AF=1;AN=2;DB;DP=519;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=32.34;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,517:517:99:16750,1560,0 16 56673227 rs11640851 C A 6468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=3.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.17;ReadPosRankSum=0.614;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:185,171:356:99:0|1:56673227_C_A:6497,0,7169 16 56673249 rs11647171 T C 6470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=2.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.59;ReadPosRankSum=1.247;SOR=0.569 GT:AD:DP:GQ:PGT:PID:PL 0/1:178,170:348:99:0|1:56673227_C_A:6499,0,7005 16 56686470 rs12051311 C T 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=1.077;SOR=0.849 GT:AD:DP:GQ:PL 0/1:135,84:219:99:1601,0,5353 16 56686471 rs964374 G T 3194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=-0.081;SOR=0.622 GT:AD:DP:GQ:PL 0/1:93,131:224:99:3223,0,3447 16 56855496 rs2118017 C G 1394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=7.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.33;ReadPosRankSum=0.614;SOR=0.992 GT:AD:DP:GQ:PL 0/1:32,59:91:99:1423,0,702 16 56904587 rs1529927 C G 2553.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2582,246,0 16 56913513 rs5801 C T 1082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=1.427;SOR=0.696 GT:AD:DP:GQ:PL 0/1:48,46:94:99:1111,0,1218 16 56917953 rs2304483 T C 2256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=-2.134;SOR=0.605 GT:AD:DP:GQ:PL 0/1:80,81:161:99:2285,0,2182 16 56921829 rs13306676 C T 561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=1.227;SOR=0.632 GT:AD:DP:GQ:PL 0/1:33,26:59:99:590,0,845 16 56936272 rs34772420 T C 1826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.192;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=1.246;SOR=0.702 GT:AD:DP:GQ:PL 0/1:101,79:180:99:1855,0,2093 16 56938387 rs2289115 C T 1590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.637;SOR=0.742 GT:AD:DP:GQ:PL 0/1:53,71:124:99:1619,0,1157 16 56969380 rs142638966 A G 1020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.187;SOR=0.842 GT:AD:DP:GQ:PL 0/1:44,43:87:99:1049,0,970 16 57015545 rs1800774 C T 2484.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2513,260,0 16 57016092 rs5882 G A 4208.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4237,452,0 16 57057679 rs12445252 C T 756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.467;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=2.259;SOR=0.776 GT:AD:DP:GQ:PL 0/1:35,31:66:99:785,0,1193 16 57060097 rs61738710 C T 2450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.194;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.44;SOR=0.661 GT:AD:DP:GQ:PL 0/1:112,99:211:99:2479,0,3231 16 57067595 rs58124158 A T 815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.31;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=-1.244;SOR=1.071 GT:AD:DP:GQ:PL 0/1:49,39:88:99:844,0,1142 16 57069992 rs113408105 C T 946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.53;SOR=0.819 GT:AD:DP:GQ:PL 0/1:53,46:99:99:975,0,1285 16 57070004 rs11409789 C CT 1940.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.319;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=3.24;QD=16.17;ReadPosRankSum=-1.166;SOR=0.746 GT:AD:DP:GQ:PL 0/1:59,61:120:99:1978,0,1956 16 57071113 rs1684579 T C 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.208;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.305;SOR=0.608 GT:AD:DP:GQ:PGT:PID:PL 0/1:78,58:136:99:0|1:57071113_T_C:1512,0,1950 16 57071114 rs1672867 A G 5133.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.47;SOR=1.335 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,137:137:99:1|1:57071113_T_C:5162,412,0 16 57073683 rs864750 G C 2774.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.095 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2803,276,0 16 57075379 rs35622257 G GT 692.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.13;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-1.134;SOR=0.895 GT:AD:DP:GQ:PL 0/1:51,32:83:99:730,0,1189 16 57080528 rs289723 C A 929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=0.689;SOR=0.652 GT:AD:DP:GQ:PL 0/1:60,44:104:99:958,0,1639 16 57392733 rs4359426 A C 2201.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2230,216,0 16 57499902 rs4937 T C 1440.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1469,150,0 16 57503213 rs601194 C T 3955.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3984,402,0 16 57562804 rs12935069 G A 5229.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5258,522,0 16 57689385 rs1801257 C G 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=1.652;SOR=0.618 GT:AD:DP:GQ:PL 0/1:76,81:157:99:1976,0,1942 16 57689883 rs1376041 T C 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.891;SOR=0.773 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1813,0,2004 16 57691265 rs2305309 C A 1379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=1.894;SOR=0.69 GT:AD:DP:GQ:PL 0/1:67,60:127:99:1408,0,1810 16 57695604 rs2290177 C T 1821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.349;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.204;SOR=0.786 GT:AD:DP:GQ:PL 0/1:69,70:139:99:1850,0,1861 16 57710093 rs12596635 C G 2635.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2664,263,0 16 57732888 rs11648684 G A 2925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.435;SOR=0.659 GT:AD:DP:GQ:PL 0/1:147,138:285:99:2954,0,3252 16 57735900 rs7196016 G C 2633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.864;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=2.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.24;ReadPosRankSum=-1.376;SOR=0.928 GT:AD:DP:GQ:PL 0/1:89,96:185:99:2662,0,2156 16 57756643 rs3809611 C T 2464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.903;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.852;SOR=0.756 GT:AD:DP:GQ:PL 0/1:119,100:219:99:2493,0,2731 16 57758732 rs2923144 C A 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=4.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.38;ReadPosRankSum=1.085;SOR=1.064 GT:AD:DP:GQ:PL 0/1:99,60:159:99:1202,0,2480 16 57786517 rs2965797 C T 1919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.715;SOR=0.624 GT:AD:DP:GQ:PL 0/1:86,87:173:99:1948,0,1983 16 57786711 rs2965798 C T 2407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.089;SOR=0.73 GT:AD:DP:GQ:PL 0/1:106,108:214:99:2436,0,2493 16 57787027 rs12922275 C T 2204.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.487;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=1.294;SOR=0.59 GT:AD:DP:GQ:PL 0/1:117,98:215:99:2233,0,3073 16 57795343 rs12920931 G A 2073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.716;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.788;SOR=0.792 GT:AD:DP:GQ:PL 0/1:75,85:160:99:2102,0,1664 16 57795394 rs2967172 G A 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.361;SOR=0.574 GT:AD:DP:GQ:PL 0/1:77,66:143:99:1409,0,1878 16 57805176 rs2967165 A G 7384.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.39;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7413,683,0 16 57921843 rs11867123 G A 2656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.77;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=1.171;SOR=0.604 GT:AD:DP:GQ:PL 0/1:121,119:240:99:2685,0,2847 16 57937856 rs413562 G C 5226.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5255,528,0 16 57937895 rs437920 G A 3868.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3897,397,0 16 57949251 rs483053 G A 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=-0.182;SOR=0.834 GT:AD:DP:GQ:PL 0/1:43,70:113:99:1683,0,978 16 57950057 rs376270 G A 884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.586;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=1.737;SOR=0.63 GT:AD:DP:GQ:PL 0/1:53,43:96:99:913,0,1467 16 57974240 rs2303778 G A 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.34;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=1.183;SOR=0.862 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1528,0,1449 16 57993841 rs61745888 C T 1595.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.016;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.9;ReadPosRankSum=0.279;SOR=0.681 GT:AD:DP:GQ:PL 0/1:132,70:202:99:1624,0,3051 16 57993947 rs76788887 T C 2812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.868;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-0.057;SOR=0.635 GT:AD:DP:GQ:PL 0/1:163,121:284:99:2841,0,3927 16 57996932 rs17821448 G A 1504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=6.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-0.782;SOR=1.199 GT:AD:DP:GQ:PL 0/1:82,66:148:99:1533,0,2126 16 57996960 rs13336595 C T 3533.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=1.355 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3562,364,0 16 58019396 rs9934227 G A 8075.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8104,826,0 16 58030401 rs3743555 T C 8843.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8872,858,0 16 58030634 rs3743556 C T 8590.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8619,850,0 16 58079127 rs41504346 A G 4075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.517;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=1.37;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=13.5;ReadPosRankSum=-1.302;SOR=0.788 GT:AD:DP:GQ:PL 0/1:144,158:302:99:4104,0,3277 16 58313578 rs71155257 CT C 901.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.235;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.458;QD=10.02;ReadPosRankSum=-1.494;SOR=0.599 GT:AD:DP:GQ:PL 0/1:41,49:101:99:939,0,839 16 58314433 rs2241414 T C 2368.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.008;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.86;SOR=0.758 GT:AD:DP:GQ:PL 0/1:103,98:201:99:2397,0,2572 16 58314598 rs1052276 C T 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-1.03;SOR=0.541 GT:AD:DP:GQ:PL 0/1:106,97:203:99:2177,0,2650 16 58318604 rs3815803 T C 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.276;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.483;QD=10.57;ReadPosRankSum=0.648;SOR=0.674 GT:AD:DP:GQ:PL 0/1:71,66:137:99:1476,0,1602 16 58327646 rs2288012 A G 5653.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5682,581,0 16 58545426 rs42945 A G 8486.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,294:294:99:8515,882,0 16 58549932 rs4784046 T C 7625.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.87;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7654,695,0 16 58552921 rs3607 G A 3082.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.45;SOR=1.354 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3111,285,0 16 58566304 rs37060 G A 7870.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.393 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7899,782,0 16 58577315 rs5817153 GA G 1645.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.014;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.5;MQ=60.66;MQRankSum=1.326;QD=15.67;ReadPosRankSum=-0.054;SOR=0.843 GT:AD:DP:GQ:PL 0/1:20,85:118:99:1683,0,164 16 58577421 rs41260 C T 7620.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=31.23;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7649,729,0 16 58579274 rs246258 C T 9550.77 PASS AC=2;AF=1;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,330:330:99:9579,989,0 16 58743454 rs30842 A C 3301.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3330,339,0 16 58750604 rs1058192 G A 3089.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.51;QD=29.71;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3118,312,0 16 58757668 rs14221 A C 3312.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3341,315,0 16 58757683 rs257636 A G 3261.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3290,333,0 16 60392555 rs11648584 G A 1802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.511;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=8.851;MLEAC=1;MLEAF=0.5;MQ=55.85;MQRankSum=-7.61;QD=10.19;ReadPosRankSum=-0.006;SOR=0.801 GT:AD:DP:GQ:PL 0/1:102,75:177:99:1831,0,2458 16 60392603 rs9746039 A G 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.913;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=6.942;MLEAC=1;MLEAF=0.5;MQ=54.21;MQRankSum=-10.797;QD=9.72;ReadPosRankSum=-0.274;SOR=1.332 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,44:146:99:0|1:60392603_A_G:1448,0,4188 16 60392618 rs9746040 A G 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.24;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=10.024;MLEAC=1;MLEAF=0.5;MQ=54.28;MQRankSum=-10.956;QD=9.13;ReadPosRankSum=-0.356;SOR=1.484 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,42:148:99:0|1:60392603_A_G:1380,0,4390 16 60392643 rs113921609 G A 2869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=4.938;MLEAC=1;MLEAF=0.5;MQ=53.33;MQRankSum=9.846;QD=17.61;ReadPosRankSum=0.432;SOR=0.473 GT:AD:DP:GQ:PL 0/1:55,108:163:99:2898,0,1713 16 60392994 rs3884159 T G 214.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.02;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=31.745;MLEAC=1;MLEAF=0.5;MQ=50.68;MQRankSum=-5.788;QD=1.92;ReadPosRankSum=-1.508;SOR=4.172 GT:AD:DP:GQ:PL 0/1:96,16:112:99:243,0,2555 16 60393058 rs113942357 C T 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.386;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=24.776;MLEAC=1;MLEAF=0.5;MQ=54.24;MQRankSum=-10.436;QD=8.28;ReadPosRankSum=-1.178;SOR=2.166 GT:AD:DP:GQ:PL 0/1:103,51:154:99:1303,0,2762 16 60393404 rs2407146 T A 7615.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=30.83;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7644,740,0 16 65016087 rs35213 A C 1370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.207;SOR=0.661 GT:AD:DP:GQ:PL 0/1:74,62:136:99:1399,0,1882 16 65022114 rs28216 C T 2911.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2940,300,0 16 65025658 rs35196 T C 2862.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2891,273,0 16 65025718 rs35195 G A 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.442;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.824;SOR=0.751 GT:AD:DP:GQ:PL 0/1:52,73:127:99:1769,0,1113 16 65025849 rs35194 A G 2148.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=1.41 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2177,201,0 16 65038674 rs35182 G A 2432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-1.663;SOR=0.647 GT:AD:DP:GQ:PL 0/1:114,105:219:99:2461,0,2845 16 66420885 rs1130844 C T 2041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.068;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=4.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=1.712;SOR=0.669 GT:AD:DP:GQ:PL 0/1:89,79:168:99:2070,0,2258 16 66432423 rs1049970 T C 2391.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.18;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2420,262,0 16 66757728 rs59506954 G GA 163.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.64;ReadPosRankSum=0.619;SOR=0.647 GT:AD:DP:GQ:PL 0/1:47,15:82:99:201,0,1005 16 66764069 rs34706526 G C 1667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-1.894;SOR=0.594 GT:AD:DP:GQ:PL 0/1:75,77:152:99:1696,0,1593 16 67038140 rs80049126 G A 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=1.313;SOR=0.697 GT:AD:DP:GQ:PL 0/1:61,66:127:99:1654,0,1593 16 67221050 rs9924876 A G 6803.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6832,661,0 16 67233266 rs12923138 A C 2581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.645;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.373;SOR=0.738 GT:AD:DP:GQ:PL 0/1:106,100:206:99:2610,0,2735 16 67300016 . TGAG T 117.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0;DP=137;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.92;ReadPosRankSum=1.262;SOR=1.022 GT:AD:DP:GQ:PL 0/1:116,12:128:99:155,0,5076 16 67691668 rs6979 A G 2578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=0.414;SOR=0.765 GT:AD:DP:GQ:PL 0/1:90,104:194:99:2607,0,2244 16 67805993 rs35741053 C CA 86.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.116;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.12;ReadPosRankSum=0.33;SOR=0.864 GT:AD:DP:GQ:PL 0/1:29,12:54:99:124,0,536 16 67876823 rs377516180 ACAG A 174.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=4.482;QD=0.76;ReadPosRankSum=-1.379;SOR=0.942 GT:AD:DP:GQ:PL 0/1:209,21:230:99:212,0,8347 16 67965752 rs142161993 A G 1933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.983;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=2.063;SOR=0.52 GT:AD:DP:GQ:PL 0/1:84,77:161:99:1962,0,1951 16 67979423 rs17851876 G T 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-2.332;SOR=0.62 GT:AD:DP:GQ:PL 0/1:77,83:160:99:2097,0,1893 16 68025801 rs255051 G C 9180.77 PASS AC=2;AF=1;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,304:304:99:9209,912,0 16 68057096 rs237831 T C 5928.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.08;SOR=2.075 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5957,508,0 16 68100461 rs2285912 C T 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.57;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=0.856;SOR=1.048 GT:AD:DP:GQ:PL 0/1:71,51:122:99:1190,0,1786 16 68156767 . A G 2919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DP=216;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.52;ReadPosRankSum=0.818;SOR=0.781 GT:AD:DP:GQ:PL 0/1:101,115:216:99:2948,0,2522 16 68344696 rs3803650 C T 2714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.429;SOR=0.691 GT:AD:DP:GQ:PL 0/1:97,113:210:99:2743,0,2438 16 68389772 rs1131933 C T 3438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.539;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.97;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-0.736;SOR=0.792 GT:AD:DP:GQ:PL 0/1:114,141:255:99:3467,0,2617 16 68395094 rs2279539 G A 1786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1.172;SOR=0.545 GT:AD:DP:GQ:PL 0/1:85,84:169:99:1815,0,1870 16 68398924 rs1868158 C T 2173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.854;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-1.55;SOR=0.988 GT:AD:DP:GQ:PL 0/1:85,86:171:99:2202,0,2094 16 68598007 rs1177648 A G 7185.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.66;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,220:220:99:7214,659,0 16 68713730 rs2296409 G A 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=0.3;SOR=0.713 GT:AD:DP:GQ:PL 0/1:63,48:111:99:1129,0,1645 16 68713823 rs2296408 C A 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=0.609;SOR=0.758 GT:AD:DP:GQ:PL 0/1:92,62:154:99:1464,0,2381 16 68721470 rs2296405 T C 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.721;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=2.554;SOR=0.695 GT:AD:DP:GQ:PL 0/1:71,61:132:99:1502,0,1663 16 68721533 rs1126933 G C 1677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.098;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=1.403;SOR=0.744 GT:AD:DP:GQ:PL 0/1:82,71:153:99:1706,0,2016 16 68725783 rs2274239 G A 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-1.191;SOR=0.717 GT:AD:DP:GQ:PL 0/1:85,88:173:99:1929,0,2024 16 68729785 rs17715450 C A 1962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=5.399;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.322;SOR=0.641 GT:AD:DP:GQ:PL 0/1:88,85:173:99:1991,0,2227 16 68771372 rs3743674 C T 3480.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.44;QD=28.77;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3509,363,0 16 68857441 rs1801552 T C 1747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=0.161;SOR=0.47 GT:AD:DP:GQ:PL 0/1:57,74:131:99:1776,0,1379 16 69143577 rs2232228 A G 3217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.42;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=1.866;SOR=0.74 GT:AD:DP:GQ:PL 0/1:96,124:220:99:3246,0,2131 16 69177268 rs2288036 C T 1732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=2.995;SOR=0.65 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1761,0,1772 16 69304048 rs1136042 A G 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.363;SOR=0.682 GT:AD:DP:GQ:PL 0/1:57,66:123:99:1527,0,1318 16 69354682 rs17702834 C T 1127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.458;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-1.925;SOR=0.745 GT:AD:DP:GQ:PL 0/1:83,52:135:99:1156,0,1875 16 69354963 rs1127231 A G 2010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.941;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-0.048;SOR=0.502 GT:AD:DP:GQ:PL 0/1:72,77:149:99:2039,0,1841 16 69355155 rs1127232 G A 2197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.166;QD=10.22;ReadPosRankSum=1.059;SOR=0.878 GT:AD:DP:GQ:PL 0/1:123,92:215:99:2226,0,3097 16 69356612 rs72795271 C G 1698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.38;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=0.543;SOR=0.574 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1727,0,1837 16 69364030 rs3852691 G A 3873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-1.388;SOR=0.734 GT:AD:DP:GQ:PL 0/1:172,163:335:99:3902,0,4372 16 69364443 rs8057004 A G 3036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.883;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=1.848;SOR=0.608 GT:AD:DP:GQ:PL 0/1:153,127:280:99:3065,0,3731 16 69373414 rs11542583 T C 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=-0.642;SOR=0.571 GT:AD:DP:GQ:PL 0/1:81,106:187:99:2794,0,2029 16 69373723 rs140175616 A G 994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.494;SOR=0.542 GT:AD:DP:GQ:PL 0/1:47,42:89:99:1023,0,1180 16 69377499 rs11649369 T C 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.435;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=-0.315;SOR=0.714 GT:AD:DP:GQ:PL 0/1:94,68:162:99:1527,0,2300 16 69381769 rs16958777 C T 2069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.88;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-1.994;SOR=0.739 GT:AD:DP:GQ:PL 0/1:103,95:198:99:2098,0,2374 16 69419394 rs34415214 G A 1382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.56;ReadPosRankSum=0.498;SOR=0.48 GT:AD:DP:GQ:PL 0/1:38,57:95:99:1411,0,1004 16 69704122 rs72523664 C CTG 1258.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.069;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=1.042;QD=26.22;ReadPosRankSum=1.511;SOR=0.836 GT:AD:DP:GQ:PL 0/1:16,32:48:99:1296,0,563 16 69704204 rs3217435 CT C 308.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-2.058;SOR=0.382 GT:AD:DP:GQ:PL 0/1:15,16:31:99:346,0,355 16 69782855 rs3811348 C T 7172.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.78;QD=29.76;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7201,723,0 16 69963355 rs1566452 G A 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.494;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=5.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-1.984;SOR=1.184 GT:AD:DP:GQ:PL 0/1:71,58:129:99:1421,0,1761 16 69967897 rs2270841 T C 1945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.296;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.395;SOR=0.717 GT:AD:DP:GQ:PL 0/1:86,80:166:99:1974,0,1920 16 69970329 rs1983016 A G 3369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.462;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.489;SOR=0.584 GT:AD:DP:GQ:PL 0/1:151,146:297:99:3398,0,3501 16 69985383 . G A 2665.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.837;ClippingRankSum=0;DP=651;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.5;MQ=39.62;MQRankSum=1.119;QD=4.09;ReadPosRankSum=0.065;SOR=0.935 GT:AD:DP:GQ:PL 0/1:490,161:651:99:2694,0,12480 16 69988319 rs3869427 T C 154.77 SNP_QD_filter;SNP_FS_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.695;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=78.421;MLEAC=1;MLEAF=0.5;MQ=57.51;MQRankSum=-16.054;QD=0.49;ReadPosRankSum=-1.847;SOR=6.671 GT:AD:DP:GQ:PL 0/1:281,33:314:99:183,0,7942 16 69988359 rs2549095 A G 837.77 SNP_FS_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.872;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=101.255;MLEAC=1;MLEAF=0.5;MQ=57.13;MQRankSum=-17.104;QD=2.77;ReadPosRankSum=1.172;SOR=7.328 GT:AD:DP:GQ:PGT:PID:PL 0/1:264,38:302:99:0|1:69988359_A_G:866,0,11846 16 69988373 rs2549097 T C 1162.77 SNP_FS_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.26;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=67.533;MLEAC=1;MLEAF=0.5;MQ=56.55;MQRankSum=-16.971;QD=3.79;ReadPosRankSum=0.061;SOR=3.957 GT:AD:DP:GQ:PGT:PID:PL 0/1:258,49:307:99:0|1:69988359_A_G:1191,0,11729 16 69996985 . G C 147.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.069;ClippingRankSum=0;DP=394;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.5;MQ=43.62;MQRankSum=0.191;QD=0.38;ReadPosRankSum=1.239;SOR=0.605 GT:AD:DP:GQ:PL 0/1:344,50:394:99:176,0,8486 16 70154480 rs200469748 A G 87.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.5;MQ=57.68;MQRankSum=-10.531;QD=0.66;ReadPosRankSum=-2.266;SOR=0.824 GT:AD:DP:GQ:PL 0/1:113,20:133:99:116,0,2821 16 70161263 rs2549532 T C 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.374;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.5;MQ=51.23;MQRankSum=-7.055;QD=9;ReadPosRankSum=-1.353;SOR=0.928 GT:AD:DP:GQ:PL 0/1:51,29:80:99:748,0,1237 16 70164334 rs10852462 A G 554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.908;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.46;MQRankSum=-1.212;QD=6.1;ReadPosRankSum=0.666;SOR=0.638 GT:AD:DP:GQ:PL 0/1:62,29:91:99:583,0,1531 16 70177577 rs2303198 G A 710.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=52.39;MQRankSum=-6.241;QD=4.23;ReadPosRankSum=1.306;SOR=0.533 GT:AD:DP:GQ:PL 0/1:125,43:168:99:739,0,3316 16 70182375 rs62050977 T C 606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.93;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=6.863;MLEAC=1;MLEAF=0.5;MQ=56.17;MQRankSum=-0.796;QD=6.01;ReadPosRankSum=-0.597;SOR=1.615 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,21:101:99:0|1:70182375_T_C:635,0,3265 16 70182390 rs62050978 T G 925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.483;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=10.706;MLEAC=1;MLEAF=0.5;MQ=56.84;MQRankSum=-0.101;QD=7.59;ReadPosRankSum=-1.992;SOR=1.734 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,31:122:99:0|1:70182375_T_C:954,0,3530 16 70190401 rs6499302 C T 1044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.97;ReadPosRankSum=0.375;SOR=0.87 GT:AD:DP:GQ:PL 0/1:96,54:150:99:1073,0,2388 16 70211199 rs138033591 T C 1789.77 SNP_MQ_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.083;ClippingRankSum=0;DB;DP=375;ExcessHet=3.0103;FS=7.086;MLEAC=1;MLEAF=0.5;MQ=33.7;MQRankSum=-12.809;QD=4.77;ReadPosRankSum=1.109;SOR=1.101 GT:AD:DP:GQ:PL 0/1:271,104:375:99:1818,0,6890 16 70211226 rs150357848 T C 3470.77 SNP_MQ_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.21;ClippingRankSum=0;DB;DP=613;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.5;MQ=38.02;MQRankSum=-12.872;QD=5.66;ReadPosRankSum=-1.422;SOR=0.567 GT:AD:DP:GQ:PL 0/1:417,196:613:99:3499,0,10357 16 70211290 rs76842247 T C 5058.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.267;ClippingRankSum=0;DB;DP=994;ExcessHet=3.0103;FS=1.89;MLEAC=1;MLEAF=0.5;MQ=41.81;MQRankSum=-17.944;QD=5.09;ReadPosRankSum=2.759;SOR=0.858 GT:AD:DP:GQ:PL 0/1:678,315:993:99:5087,0,15561 16 70211370 rs144090331 C G 2943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.44;ClippingRankSum=0;DB;DP=648;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.36;MQRankSum=-11.366;QD=4.55;ReadPosRankSum=-1.508;SOR=0.785 GT:AD:DP:GQ:PGT:PID:PL 0/1:530,117:647:99:0|1:70211370_C_G:2972,0,20927 16 70211380 rs200721332 G A 2600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.393;ClippingRankSum=0;DB;DP=571;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.5;MQRankSum=-10.384;QD=4.55;ReadPosRankSum=-1.848;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:474,97:571:99:0|1:70211370_C_G:2629,0,20005 16 70219532 . G A 220.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.259;ClippingRankSum=-0;DP=18;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.33;MQRankSum=-1.968;QD=12.26;ReadPosRankSum=-1.811;SOR=0.693 GT:AD:DP:GQ:PL 0/1:9,9:18:99:249,0,318 16 70285400 rs200071202 C G 3303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=7.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=0.848;SOR=0.392 GT:AD:DP:GQ:PL 0/1:99,142:241:99:3332,0,2198 16 70287177 rs4081753 A G 979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.221;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.957;SOR=0.705 GT:AD:DP:GQ:PL 0/1:49,37:86:99:1008,0,1159 16 70303580 rs2070203 G A 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.182;SOR=0.723 GT:AD:DP:GQ:PL 0/1:112,118:230:99:2680,0,2517 16 70395387 rs1134074 C T 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=2.174;SOR=0.653 GT:AD:DP:GQ:PL 0/1:61,64:125:99:1398,0,1392 16 70506907 rs7192865 T C 5802.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.161 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5831,567,0 16 70515355 rs11054 C T 4667.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.008 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4696,474,0 16 70548297 rs3931036 G A 4222.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4251,455,0 16 70726795 rs2278983 C A 10195.8 PASS AC=2;AF=1;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,339:339:99:10224,1016,0 16 70796515 rs2305689 G A 5216.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.82;SOR=0.739 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,131:131:99:1|1:70796515_G_A:5245,397,0 16 70818759 rs2271047 A G 2934.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.17;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2963,323,0 16 70934892 rs4985435 T C 58.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.169;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.5;MQ=48.54;MQRankSum=-3.865;QD=0.83;ReadPosRankSum=-0.496;SOR=1.044 GT:AD:DP:GQ:PL 0/1:61,10:71:87:87,0,1522 16 70934974 rs12102425 T C 598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.41;MQRankSum=-5.81;QD=2.84;ReadPosRankSum=-0.261;SOR=0.657 GT:AD:DP:GQ:PL 0/1:163,48:211:99:627,0,4379 16 70954915 rs1798531 G T 2433.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.57;QD=34.77;SOR=1.931 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2462,210,0 16 70972595 rs79004160 T C 4474.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.42;QD=27.29;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4503,490,0 16 70977695 rs12149139 T C 241.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.326;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=7.532;MLEAC=1;MLEAF=0.5;MQ=58.79;MQRankSum=-6.297;QD=1.07;ReadPosRankSum=-1.551;SOR=1.357 GT:AD:DP:GQ:PL 0/1:194,31:225:99:270,0,4985 16 71012855 rs149870093 T C 49.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.239;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=44.722;MLEAC=1;MLEAF=0.5;MQ=51.89;MQRankSum=-7.176;QD=0.23;ReadPosRankSum=-2.316;SOR=4.712 GT:AD:DP:GQ:PL 0/1:199,21:220:78:78,0,4850 16 71318577 rs3803704 T C 1429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.692;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.05;ReadPosRankSum=-0.946;SOR=0.708 GT:AD:DP:GQ:PL 0/1:44,51:95:99:1458,0,1040 16 71319539 rs3826247 C T 2548.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.98;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2577,225,0 16 71319646 rs3096380 G A 2878.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2907,270,0 16 71418291 rs41280904 T C 376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.98;ReadPosRankSum=0.274;SOR=1.574 GT:AD:DP:GQ:PL 0/1:36,18:54:99:405,0,838 16 71487206 rs2070832 T C 4318.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4347,431,0 16 71487952 rs11641967 G T 2043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=0.19;SOR=0.922 GT:AD:DP:GQ:PL 0/1:59,83:142:99:2072,0,1514 16 71509588 rs2288487 G A 3362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=7.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=-1.318;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,106:246:99:0|1:71509588_G_A:3391,0,4951 16 71509634 rs2288488 G C 2611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=5.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-2.73;SOR=0.436 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,78:196:99:0|1:71509588_G_A:2640,0,4413 16 71509685 rs2288489 C G 6946.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.73;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,200:200:99:1|1:71509588_G_A:6975,599,0 16 71509796 rs8050871 C G 7151.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.42;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7180,643,0 16 71610276 rs74344827 G A 2420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=4.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.042;SOR=1.023 GT:AD:DP:GQ:PL 0/1:91,103:194:99:2449,0,2084 16 71660115 rs4788820 G C 3625.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.26;SOR=3.545 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3654,300,0 16 71660404 rs61753635 G A 9206.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,288:288:99:9235,864,0 16 71683718 rs61733127 A G 2308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.933;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=2.151;SOR=0.761 GT:AD:DP:GQ:PL 0/1:88,89:177:99:2337,0,2045 16 71701248 rs1423983 G A 2349.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2378,248,0 16 71718366 rs7195059 C T 3623.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3652,342,0 16 71792696 rs12919271 C A 2676.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2705,290,0 16 71805160 rs4788443 G A 1831.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.73;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=22.9;ReadPosRankSum=-0.576;SOR=0.927 GT:AD:DP:GQ:PL 1/1:6,74:80:92:1860,92,0 16 71807232 rs113235758 C A 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.531;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.049;SOR=0.867 GT:AD:DP:GQ:PL 0/1:75,82:157:99:1854,0,1615 16 71956511 rs148848854 AATGCCC A 2781.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=2.924;QD=19.59;ReadPosRankSum=0.046;SOR=0.467 GT:AD:DP:GQ:PL 0/1:67,75:142:99:2819,0,3491 16 71967927 rs17358402 C T 4793.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.2;ReadPosRankSum=-0.655;SOR=0.717 GT:AD:DP:GQ:PL 1/1:2,168:170:99:4822,460,0 16 71981414 rs35740347 C CTTTG 2718.73 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.57;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2756,187,0 16 71983929 rs35377660 A T 4742.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.944 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4771,473,0 16 71986946 rs7204708 A G 5464.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=32.53;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5493,504,0 16 71988106 rs9921412 C T 4121.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=30.99;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4150,399,0 16 72007399 rs9925415 C T 4757.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.354 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4786,471,0 16 72011181 rs1559401 G T 4548.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4577,464,0 16 72011193 rs1559400 A C 4857.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4886,471,0 16 72011261 rs1559399 A G 4708.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4737,494,0 16 72013797 rs7185272 G C 6582.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6611,628,0 16 72020134 rs12708923 T C 6909.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6938,656,0 16 72020294 rs4788590 G A 6553.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.102;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.771;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.26;ReadPosRankSum=-0.669;SOR=0.785 GT:AD:DP:GQ:PL 1/1:1,223:224:99:6582,662,0 16 72020323 rs4788591 A G 5619.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=1.28 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5648,557,0 16 72027191 rs7191148 T A 988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=1.407;SOR=0.693 GT:AD:DP:GQ:PL 0/1:45,45:90:99:1017,0,1093 16 72033801 rs72787027 G T 1737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-1.069;SOR=0.923 GT:AD:DP:GQ:PL 0/1:64,70:134:99:1766,0,1523 16 72042682 rs3213422 A C 3200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.769;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=2.305;SOR=0.627 GT:AD:DP:GQ:PL 0/1:131,128:259:99:3229,0,3272 16 72107865 rs11642506 C T 1846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-1.17;SOR=0.702 GT:AD:DP:GQ:PL 0/1:86,82:168:99:1875,0,2119 16 72110467 rs675973 G T 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.997;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.5;MQ=57.38;MQRankSum=-4.897;QD=10.67;ReadPosRankSum=1.209;SOR=0.884 GT:AD:DP:GQ:PL 0/1:101,84:185:99:2002,0,2846 16 72110948 rs12646 C G 2572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.5;MQ=53.22;MQRankSum=-1.527;QD=10.59;ReadPosRankSum=-0.639;SOR=0.778 GT:AD:DP:GQ:PL 0/1:136,107:243:99:2601,0,3524 16 72130203 rs1050361 C G 3591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=0.805;SOR=0.701 GT:AD:DP:GQ:PL 0/1:169,149:318:99:3620,0,4185 16 72130815 rs1050362 C A 3191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-1.023;SOR=0.732 GT:AD:DP:GQ:PL 0/1:137,144:281:99:3220,0,3071 16 72132832 rs150221434 G A 2326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=5.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=1.142;SOR=0.989 GT:AD:DP:GQ:PL 0/1:127,102:229:99:2355,0,3285 16 72135014 rs1050363 T C 4348.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4377,461,0 16 72137561 rs2240243 G A 2527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-2.344;SOR=0.636 GT:AD:DP:GQ:PL 0/1:111,120:231:99:2556,0,2474 16 72139184 rs2074626 C A 2020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=1.309;SOR=0.584 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2049,0,2220 16 72139396 rs150617 T C 3912.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3941,378,0 16 72139537 rs42544 T C 3848.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3877,407,0 16 72156842 rs16973716 T G 3389.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3418,333,0 16 72162966 rs34832584 G T 1669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.321;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=0.236;SOR=0.766 GT:AD:DP:GQ:PL 0/1:119,78:197:99:1698,0,2874 16 72184566 rs35370634 C T 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=9.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.211;SOR=0.738 GT:AD:DP:GQ:PL 0/1:96,83:179:99:2078,0,2614 16 72821618 rs112443847 A G 61.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.023;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=6.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.4;ReadPosRankSum=-3.596;SOR=1.694 GT:AD:DP:GQ:PL 0/1:141,13:155:90:90,0,7201 16 72827758 rs699444 T C 9364.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9393,893,0 16 72832135 rs740178 T A 7435.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7464,729,0 16 72832618 . TA T 249.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0;DP=197;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.76;ReadPosRankSum=0.789;SOR=0.901 GT:AD:DP:GQ:PL 0/1:111,31:174:99:287,0,2450 16 72991660 rs10852515 C G 13740.8 PASS AC=2;AF=1;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.986 GT:AD:DP:GQ:PL 1/1:0,448:448:99:13769,1343,0 16 72991715 rs4788682 A G 14240.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.204;ClippingRankSum=0;DB;DP=548;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.48;ReadPosRankSum=0.19;SOR=0.761 GT:AD:DP:GQ:PL 1/1:12,488:500:99:14269,957,0 16 72992221 rs61735550 G A 3913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.192;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=3.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.183;SOR=0.893 GT:AD:DP:GQ:PL 0/1:161,157:318:99:3942,0,4555 16 72993831 rs7193297 A C 5222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.745;SOR=0.95 GT:AD:DP:GQ:PL 0/1:228,210:438:99:5251,0,5717 16 74425358 rs6564065 G A 3074.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0;DB;DP=731;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.5;MQ=53.18;MQRankSum=-19.934;QD=4.21;ReadPosRankSum=-0.98;SOR=0.968 GT:AD:DP:GQ:PL 0/1:559,171:730:99:3103,0,15461 16 74425548 rs2868591 A G 14662.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.019;ClippingRankSum=0;DB;DP=614;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.355;QD=23.88;ReadPosRankSum=-0.362;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 0/1:233,381:614:99:0|1:74425548_A_G:14691,0,11408 16 74425569 rs11641596 C T 14773.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.412;ClippingRankSum=0;DB;DP=636;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.378;QD=23.27;ReadPosRankSum=1.015;SOR=0.628 GT:AD:DP:GQ:PGT:PID:PL 0/1:246,389:635:99:0|1:74425548_A_G:14802,0,11701 16 74425702 rs199876218 G A 2395.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.592;ClippingRankSum=0;DB;DP=785;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.5;MQ=57.92;MQRankSum=-16.564;QD=3.06;ReadPosRankSum=1.22;SOR=1.064 GT:AD:DP:GQ:PGT:PID:PL 0/1:680,103:783:99:0|1:74425702_G_A:2424,0,28321 16 74425703 rs200974911 G A 2473.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.905;ClippingRankSum=0;DB;DP=776;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.5;MQ=57.87;MQRankSum=-16.451;QD=3.19;ReadPosRankSum=1.196;SOR=1.072 GT:AD:DP:GQ:PGT:PID:PL 0/1:671,104:775:99:0|1:74425702_G_A:2502,0,28398 16 74425732 rs77563894 G T 3202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.709;ClippingRankSum=0;DB;DP=786;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.5;MQ=55.62;MQRankSum=-11.76;QD=4.08;ReadPosRankSum=3.15;SOR=0.848 GT:AD:DP:GQ:PGT:PID:PL 0/1:660,125:785:99:0|1:74425702_G_A:3231,0,27757 16 74425769 rs200486331 C T 2945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.626;ClippingRankSum=0;DB;DP=803;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.5;MQ=53.6;MQRankSum=-7.22;QD=3.67;ReadPosRankSum=3.64;SOR=0.656 GT:AD:DP:GQ:PGT:PID:PL 0/1:686,117:803:99:0|1:74425702_G_A:2974,0,29029 16 74425787 rs375776693 G T 2213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.478;ClippingRankSum=0;DB;DP=731;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=52.7;MQRankSum=-5.628;QD=3.03;ReadPosRankSum=1.459;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL 0/1:632,99:731:99:0|1:74425702_G_A:2242,0,26992 16 74425793 rs199839508 T C 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.93;ClippingRankSum=0;DB;DP=716;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.28;MQRankSum=-5.32;QD=3.03;ReadPosRankSum=-0.279;SOR=0.656 GT:AD:DP:GQ:PGT:PID:PL 0/1:619,97:716:99:0|1:74425702_G_A:2195,0,25910 16 74425795 . G A 2261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.549;ClippingRankSum=0;DP=708;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.13;MQRankSum=-5.394;QD=3.19;ReadPosRankSum=-0.612;SOR=0.67 GT:AD:DP:GQ:PL 0/1:610,98:708:99:2290,0,15997 16 74425826 . G A 1029.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0;DP=574;ExcessHet=3.0103;FS=3.107;MLEAC=1;MLEAF=0.5;MQ=49.25;MQRankSum=-6.651;QD=1.79;ReadPosRankSum=-4.155;SOR=1.101 GT:AD:DP:GQ:PGT:PID:PL 0/1:512,62:574:99:0|1:74425702_G_A:1058,0,20948 16 74443433 . C G 540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.325;ClippingRankSum=0;DP=115;ExcessHet=3.0103;FS=14.007;MLEAC=1;MLEAF=0.5;MQ=41.02;MQRankSum=-0.092;QD=4.7;ReadPosRankSum=0.939;SOR=3.398 GT:AD:DP:GQ:PL 0/1:93,22:115:99:569,0,3116 16 74443542 rs146555914 G C 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=4.014;MLEAC=1;MLEAF=0.5;MQ=51.41;MQRankSum=2.221;QD=4.15;ReadPosRankSum=-0.291;SOR=0.848 GT:AD:DP:GQ:PL 0/1:278,90:368:99:1557,0,7313 16 74443733 rs201939921 T G 6659.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.67;QD=31.41;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6688,636,0 16 74443789 rs147229926 T TG 449.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.222;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=4.887;MLEAC=1;MLEAF=0.5;MQ=33.86;MQRankSum=0.159;QD=1.46;ReadPosRankSum=1.478;SOR=0.786 GT:AD:DP:GQ:PL 0/1:267,42:309:99:487,0,7782 16 74444537 rs201796481 C T 438.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.227;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=3.181;MLEAC=1;MLEAF=0.5;MQ=31.42;MQRankSum=0.247;QD=1.78;ReadPosRankSum=-1.531;SOR=0.576 GT:AD:DP:GQ:PGT:PID:PL 0/1:209,37:246:99:0|1:74444537_C_T:467,0,6446 16 74444538 rs200257900 G A 1169.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=8.486;MLEAC=1;MLEAF=0.5;MQ=31.41;MQRankSum=1.8;QD=4.72;ReadPosRankSum=0.009;SOR=1.237 GT:AD:DP:GQ:PGT:PID:PL 0/1:186,62:248:99:1|0:74444537_C_T:1198,0,5386 16 74444838 rs142404156 A G 6233.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.486;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=44.001;MLEAC=1;MLEAF=0.5;MQ=29.57;MQRankSum=-2.007;QD=15.66;ReadPosRankSum=1.147;SOR=0.297 GT:AD:DP:GQ:PL 0/1:145,253:398:99:6262,0,3022 16 74445689 rs200867217 C T 174.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.474;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=15.48;MLEAC=1;MLEAF=0.5;MQ=28.8;MQRankSum=-2.374;QD=3.01;ReadPosRankSum=0.078;SOR=3.581 GT:AD:DP:GQ:PL 0/1:44,14:58:99:203,0,1254 16 74446044 . G C 255.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.649;ClippingRankSum=0;DP=66;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.5;MQ=28.82;MQRankSum=0.319;QD=3.88;ReadPosRankSum=0.81;SOR=0.375 GT:AD:DP:GQ:PL 0/1:51,15:66:99:284,0,1453 16 74451960 rs201007386 C T 569.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0;DB;DP=421;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.5;MQ=44.22;MQRankSum=-7.128;QD=1.35;ReadPosRankSum=1.773;SOR=0.957 GT:AD:DP:GQ:PGT:PID:PL 0/1:377,44:421:99:0|1:74451960_C_T:598,0,15387 16 74451970 rs201240581 G C 510.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.34;MQRankSum=-6.675;QD=1.24;ReadPosRankSum=0.995;SOR=0.732 GT:AD:DP:GQ:PGT:PID:PL 0/1:374,39:413:99:0|1:74451960_C_T:539,0,15400 16 74537591 rs4887772 C T 707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.47;SOR=0.787 GT:AD:DP:GQ:PL 0/1:35,29:64:99:736,0,934 16 74542837 . G GA 52.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.4;ReadPosRankSum=-0.071;SOR=1.085 GT:AD:DP:GQ:PL 0/1:15,7:22:90:90,0,269 16 74695079 rs8058922 G T 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.399;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=7.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=0.115;SOR=0.705 GT:AD:DP:GQ:PL 0/1:112,113:225:99:2670,0,3004 16 74709206 rs11862413 G A 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=4.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=-1.638;SOR=0.787 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1306,0,1677 16 74729219 rs34515646 C T 2815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.309;SOR=0.764 GT:AD:DP:GQ:PL 0/1:117,124:241:99:2844,0,2886 16 74750405 rs2301865 G A 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.113;SOR=0.845 GT:AD:DP:GQ:PL 0/1:118,101:219:99:2426,0,2855 16 74937828 rs9930270 A G 5080.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5109,497,0 16 75238068 rs1049303 G A 2226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.078;SOR=0.557 GT:AD:DP:GQ:PL 0/1:104,95:199:99:2255,0,2675 16 75238103 rs4737 C T 6957.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,239:239:99:6986,716,0 16 75269003 rs11545087 G A 4510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=1.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-1.334;SOR=0.773 GT:AD:DP:GQ:PL 0/1:179,180:359:99:4539,0,4471 16 75269267 rs3169330 A G 11664.8 PASS AC=2;AF=1;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,372:372:99:11693,1116,0 16 75269325 rs16957558 C T 4754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0;DB;DP=411;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=1.225;SOR=0.615 GT:AD:DP:GQ:PL 0/1:211,198:409:99:4783,0,5219 16 75269477 rs61729595 A C 4950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0;DB;DP=382;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.124;SOR=0.576 GT:AD:DP:GQ:PL 0/1:191,191:382:99:4979,0,5241 16 75276775 rs1035539 G A 3252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.5;MQ=59.44;MQRankSum=2.3;QD=12.32;ReadPosRankSum=-0.76;SOR=0.773 GT:AD:DP:GQ:PL 0/1:136,128:264:99:3281,0,3618 16 75301838 rs148519476 G C 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.24;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=5.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=1.129;SOR=0.592 GT:AD:DP:GQ:PL 0/1:80,88:168:99:2063,0,1755 16 75327916 rs6624 A G 3042.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.134 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3071,302,0 16 75498148 rs115618771 T C 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.688;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=1.406;SOR=0.487 GT:AD:DP:GQ:PL 0/1:102,80:182:99:2327,0,2779 16 75513262 rs141905571 C T 5382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=2.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=0.51;SOR=0.567 GT:AD:DP:GQ:PL 0/1:170,215:385:99:5411,0,4196 16 75513433 rs118144424 G C 4471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.031;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.04;SOR=0.656 GT:AD:DP:GQ:PL 0/1:158,175:333:99:4500,0,3818 16 75563330 rs3826107 G A 3325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.937;SOR=0.744 GT:AD:DP:GQ:PL 0/1:162,137:299:99:3354,0,4361 16 75563746 rs8048818 T G 4765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.218;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.72;MQRankSum=-3.421;QD=14.14;ReadPosRankSum=0.664;SOR=0.699 GT:AD:DP:GQ:PL 0/1:166,171:337:99:4794,0,4233 16 75564287 rs3784932 T C 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.055;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=-2.119;SOR=0.77 GT:AD:DP:GQ:PL 0/1:75,82:157:99:2163,0,1906 16 75573884 rs2242407 T C 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.205;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.5;MQ=59.51;MQRankSum=-2.795;QD=10.09;ReadPosRankSum=0.815;SOR=0.576 GT:AD:DP:GQ:PL 0/1:73,58:131:99:1350,0,1838 16 75579233 rs2738801 A T 1352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.69;MQRankSum=1.187;QD=9.87;ReadPosRankSum=-1.053;SOR=0.636 GT:AD:DP:GQ:PL 0/1:75,62:137:99:1381,0,1856 16 75590113 rs3743602 C G 2692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.273;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.88;ReadPosRankSum=1.018;SOR=0.62 GT:AD:DP:GQ:PL 0/1:90,91:181:99:2721,0,2476 16 75646685 rs3743598 G T 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.17;SOR=0.634 GT:AD:DP:GQ:PL 0/1:120,86:206:99:1953,0,2950 16 75674252 . TAA T 339.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.7;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=1.25;QD=7.72;ReadPosRankSum=1.098;SOR=0.616 GT:AD:DP:GQ:PL 0/1:29,15:68:99:377,0,919 16 75675609 rs5030748 T C 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.648;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.439;SOR=1.048 GT:AD:DP:GQ:PL 0/1:70,54:124:99:1358,0,1739 16 76311602 rs59314262 G GT 2380.73 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=37.2;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2418,196,0 16 76350438 rs747980 C T 836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.66;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=1.641;SOR=0.62 GT:AD:DP:GQ:PL 0/1:29,35:64:99:865,0,723 16 76523792 rs7201030 A G 2933.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2962,294,0 16 76528976 rs4268783 T C 2622.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2651,272,0 16 76532583 rs12933808 A G 3980.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.101;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.45;ReadPosRankSum=-0.5;SOR=0.312 GT:AD:DP:GQ:PL 1/1:1,144:145:99:4009,393,0 16 76587202 rs7202925 T G 910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.292;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.673;SOR=0.784 GT:AD:DP:GQ:PL 0/1:49,37:86:99:939,0,1225 16 76587331 rs7184958 T C 1992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.924;SOR=0.69 GT:AD:DP:GQ:PL 0/1:73,90:163:99:2021,0,1646 16 77228629 rs2232503 A G 9755.77 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,317:317:99:9784,950,0 16 77228866 rs2232504 T C 3915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.198;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=5.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-1.423;SOR=0.972 GT:AD:DP:GQ:PL 0/1:156,153:309:99:3944,0,3885 16 77233338 rs8398 C T 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=1.43;SOR=0.665 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1463,0,1483 16 77233394 rs4888607 A G 4203.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.03;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4232,449,0 16 77246218 rs13331769 G A 2517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-1.999;SOR=0.691 GT:AD:DP:GQ:PL 0/1:106,99:205:99:2546,0,2865 16 77246517 rs62049594 C A 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.23;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-1.1;SOR=0.78 GT:AD:DP:GQ:PL 0/1:123,95:218:99:2081,0,2950 16 77246795 rs2278049 C G 3057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.159;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.823;SOR=0.658 GT:AD:DP:GQ:PL 0/1:115,129:244:99:3086,0,2627 16 77246847 rs2278048 T G 2911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.054;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=3.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.346;SOR=0.942 GT:AD:DP:GQ:PL 0/1:107,124:231:99:2940,0,2197 16 77325325 rs35478105 G T 2174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=0.628;SOR=0.488 GT:AD:DP:GQ:PL 0/1:84,95:179:99:2203,0,2051 16 77353973 rs9930984 G T 2861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.794;SOR=0.796 GT:AD:DP:GQ:PL 0/1:119,126:245:99:2890,0,2860 16 77359919 rs11640912 A T 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.116;SOR=0.603 GT:AD:DP:GQ:PL 0/1:79,68:147:99:1490,0,1826 16 77389956 rs8059275 A G 6054.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6083,610,0 16 77393207 rs2650907 G C 3035.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3064,303,0 16 77398081 rs1948719 T C 4417.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.26 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4446,429,0 16 77769834 rs308925 G A 1526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.917;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-1.317;SOR=0.661 GT:AD:DP:GQ:PL 0/1:91,69:160:99:1555,0,2090 16 77775459 rs11648791 G A 688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.1;ReadPosRankSum=0.265;SOR=0.637 GT:AD:DP:GQ:PL 0/1:61,36:97:99:717,0,1524 16 77850966 rs2966053 T C 2238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.683;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=1.442;SOR=0.491 GT:AD:DP:GQ:PL 0/1:80,94:174:99:2267,0,1831 16 78133671 rs11545028 C T 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=6.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.01;SOR=1.047 GT:AD:DP:GQ:PL 0/1:132,120:252:99:2908,0,3547 16 78142301 rs146697931 A AT 488.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.79;ReadPosRankSum=-1.527;SOR=0.913 GT:AD:DP:GQ:PL 0/1:72,30:109:99:526,0,3110 16 78142308 rs67493355 G T 1631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.493;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=3.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=-1.663;SOR=1.037 GT:AD:DP:GQ:PL 0/1:68,49:117:99:1660,0,1503 16 78198192 rs2303191 T C 1685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.049;SOR=0.765 GT:AD:DP:GQ:PL 0/1:64,75:139:99:1714,0,1444 16 78312497 rs8050128 C A 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.971;SOR=0.631 GT:AD:DP:GQ:PL 0/1:54,79:133:99:1818,0,1190 16 78420775 rs11545029 G A 3552.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3581,374,0 16 79245820 rs383362 G T 6935.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.852;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;MQRankSum=0.136;QD=31.82;ReadPosRankSum=0.167;SOR=0.25 GT:AD:DP:GQ:PL 1/1:1,217:218:99:6964,644,0 16 79245892 rs144412859 GGGGCT G 5031.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=2.07;QD=20.88;ReadPosRankSum=0.041;SOR=0.703 GT:AD:DP:GQ:PL 0/1:110,131:241:99:5069,0,4170 16 79245956 rs2288034 C G 12166.8 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=44.08;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,276:276:99:1|1:79245956_C_G:12195,837,0 16 79245961 rs2288033 T C 12003.8 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=45.13;SOR=0.755 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,266:266:99:1|1:79245956_C_G:12032,822,0 16 79633805 rs3072011 TGCC T 4107.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.1;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.809;QD=23.47;ReadPosRankSum=1.17;SOR=0.681 GT:AD:DP:GQ:PL 0/1:70,105:180:99:4145,0,2625 16 80583497 rs11866734 C T 2231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-1.369;SOR=0.714 GT:AD:DP:GQ:PL 0/1:82,95:177:99:2260,0,1933 16 80718879 rs8049284 A G 3030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.498;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.024;SOR=0.761 GT:AD:DP:GQ:PL 0/1:111,115:226:99:3059,0,2514 16 81050965 rs935939 A T 2011.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2040,201,0 16 81061827 rs2549887 G A 2766.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2795,291,0 16 81062157 rs114305409 T C 2027.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.259;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.68;ReadPosRankSum=0.227;SOR=0.812 GT:AD:DP:GQ:PL 1/1:3,73:76:99:2056,148,0 16 81062171 rs2602428 C T 3590.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.79;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,82:82:99:3619,249,0 16 81066159 . GT G 87.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1;ReadPosRankSum=-0.271;SOR=0.99 GT:AD:DP:GQ:PL 0/1:72,16:104:99:125,0,1700 16 81076970 rs17849653 A G 2036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.072;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.23;SOR=0.605 GT:AD:DP:GQ:PL 0/1:114,85:199:99:2065,0,2803 16 81077915 rs2257378 T C 4539.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.69;QD=30.47;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4568,446,0 16 81094760 rs804884 A G 3825.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=1.537 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3854,387,0 16 81095363 rs804885 C T 8675.77 PASS AC=2;AF=1;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,299:299:99:8704,895,0 16 81129822 rs8052579 G A 4322.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.702;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.76;MLEAC=1;MLEAF=0.5;MQ=47.63;MQRankSum=6.774;QD=22.63;ReadPosRankSum=-3.091;SOR=0.808 GT:AD:DP:GQ:PL 0/1:28,163:191:99:4351,0,385 16 81129851 . G A 96.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.262;ClippingRankSum=0;DP=189;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.5;MQ=47.13;MQRankSum=-6.686;QD=0.51;ReadPosRankSum=3.126;SOR=0.486 GT:AD:DP:GQ:PL 0/1:161,28:189:99:125,0,4518 16 81129887 . C A 60.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.897;ClippingRankSum=0;DP=177;ExcessHet=3.0103;FS=4.101;MLEAC=1;MLEAF=0.5;MQ=46.92;MQRankSum=-7.063;QD=0.34;ReadPosRankSum=-2.488;SOR=0.387 GT:AD:DP:GQ:PL 0/1:152,25:177:89:89,0,4318 16 81142257 rs1869348 T C 6318.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.85;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6347,656,0 16 81145755 rs11647962 A T 5995.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.599;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.772;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=41.93;ReadPosRankSum=1.733;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,142:143:99:1|1:81145737_T_G:6024,408,0 16 81145807 rs8054182 C G 5417.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5446,537,0 16 81151122 rs4889238 A C 6105.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.032;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=3.709;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.23;ReadPosRankSum=1.508;SOR=0.742 GT:AD:DP:GQ:PL 1/1:1,201:202:99:6134,595,0 16 81157324 rs4889241 G A 6102.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.99;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6131,654,0 16 81161578 rs7206183 G A 5427.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5456,555,0 16 81173136 rs12918619 T C 4334.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.768 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4363,417,0 16 81173193 rs4889244 C T 5879.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5908,579,0 16 81180988 rs7194136 C G 5545.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.73;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5574,579,0 16 81185416 rs8061038 A G 4988.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.94;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,147:147:99:5017,441,0 16 81190601 rs1453325 T C 6708.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6737,659,0 16 81190613 rs1453324 A G 6775.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6804,657,0 16 81190708 rs1453323 A C 4866.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.348 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4895,486,0 16 81193433 rs734823 G C 4247.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=1.754 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4276,405,0 16 81194382 rs2317117 T C 6591.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6620,695,0 16 81199429 rs12925622 G A 1536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=1.874;SOR=0.707 GT:AD:DP:GQ:PL 0/1:106,73:179:99:1565,0,2630 16 81199520 rs12931217 T C 5849.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5878,597,0 16 81199538 rs12931227 T C 2443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.673;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-2.76;SOR=0.592 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,68:189:99:0|1:81199538_T_C:2472,0,4809 16 81199544 rs12925771 G A 2426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-2.689;SOR=0.668 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,66:183:99:0|1:81199538_T_C:2455,0,4762 16 81199554 rs12926898 C T 2469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-1.524;SOR=0.725 GT:AD:DP:GQ:PGT:PID:PL 0/1:111,62:173:99:0|1:81199538_T_C:2498,0,4498 16 81199555 rs12597040 A G 2388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-1.838;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 0/1:110,63:173:99:0|1:81199538_T_C:2417,0,4462 16 81199572 rs12927442 A G 4738.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4767,450,0 16 81201507 rs34188236 C A 1916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.04;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=8.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=-0.081;SOR=1.388 GT:AD:DP:GQ:PL 0/1:58,76:134:99:1945,0,1455 16 81201620 rs35292101 C A 3077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=4.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=-1.533;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,84:219:99:0|1:81201620_C_A:3106,0,7174 16 81201625 rs34504526 G A 3080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=3.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=-1.231;SOR=0.669 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,84:220:99:0|1:81201620_C_A:3109,0,7137 16 81204423 rs11640279 T C 3073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=5.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-1.273;SOR=0.779 GT:AD:DP:GQ:PL 0/1:117,120:237:99:3102,0,3063 16 81208515 rs12596941 G A 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.621;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-1.375;SOR=0.673 GT:AD:DP:GQ:PL 0/1:77,61:138:99:1464,0,2328 16 81209207 rs2317114 T C 2093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.289;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-1.229;SOR=0.854 GT:AD:DP:GQ:PL 0/1:98,83:181:99:2122,0,2359 16 81213378 rs4889261 A G 5051.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5080,501,0 16 81232275 rs7205673 G A 5250.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5279,509,0 16 81232336 rs34276551 T C 2676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.844;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=0.54;SOR=0.792 GT:AD:DP:GQ:PL 0/1:99,102:201:99:2705,0,2259 16 81232564 rs7194871 T G 6935.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6964,711,0 16 81241098 rs11150369 C T 4750.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.72;SOR=0.905 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,133:133:99:1|1:81241098_C_T:4779,397,0 16 81241100 rs11150370 G C 1500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.682;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.687;SOR=0.931 GT:AD:DP:GQ:PGT:PID:PL 0/1:70,65:135:99:0|1:81241098_C_T:1529,0,1627 16 81241249 rs72831349 T A 914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.232;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.043;SOR=0.758 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,29:73:99:0|1:81241249_T_A:943,0,1658 16 81242102 rs6420424 G A 574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.075;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.39;ReadPosRankSum=2.192;SOR=0.756 GT:AD:DP:GQ:PL 0/1:60,30:90:99:603,0,1379 16 81242148 rs55980345 GTT G 1563.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.4;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=6.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.46;ReadPosRankSum=-0.904;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,42:95:99:0|1:81242148_GTT_G:1601,0,2107 16 81242151 rs5818326 T C 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=8.133;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.56;ReadPosRankSum=-0.555;SOR=0.634 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,42:95:99:0|1:81242148_GTT_G:1601,0,2107 16 81242194 rs6564838 T C 1993.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.6;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,56:56:99:2022,168,0 16 81242198 rs7499011 G A 597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.857;SOR=0.99 GT:AD:DP:GQ:PL 0/1:28,25:53:99:626,0,664 16 81248745 rs8060294 A G 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.657;SOR=0.697 GT:AD:DP:GQ:PL 0/1:119,113:232:99:2723,0,2820 16 81249927 rs7185774 C T 2873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.631;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=5;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-0.957;QD=11.27;ReadPosRankSum=-2.353;SOR=0.878 GT:AD:DP:GQ:PL 0/1:132,123:255:99:2902,0,2969 16 81249954 rs7191351 T A 6618.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=29.95;SOR=0.989 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6647,662,0 16 81253745 rs9934272 C G 2454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-0.431;SOR=0.712 GT:AD:DP:GQ:PL 0/1:145,113:258:99:2483,0,3430 16 81253759 rs9924371 A G 7358.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7387,778,0 16 81253917 rs9924530 A G 5940.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=30.31;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5969,585,0 16 81279120 rs28370522 T C 2575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.517;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.295;SOR=0.761 GT:AD:DP:GQ:PL 0/1:104,110:214:99:2604,0,2289 16 81295902 rs7500996 T C 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-0.631;SOR=0.516 GT:AD:DP:GQ:PL 0/1:60,65:125:99:1623,0,1491 16 81301694 rs12934922 A T 4416.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4445,475,0 16 81303759 rs4889294 T C 4939.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.79;SOR=1.66 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4968,426,0 16 81398635 rs2608555 C T 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-1.93;SOR=0.622 GT:AD:DP:GQ:PL 0/1:56,58:114:99:1298,0,1313 16 81737695 rs72831128 G A 1785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=0.704;SOR=0.859 GT:AD:DP:GQ:PL 0/1:58,68:126:99:1814,0,1428 16 81819768 rs1143685 T C 5767.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5796,597,0 16 81892708 rs4888183 T A 465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.342;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=1.358;SOR=0.542 GT:AD:DP:GQ:PL 0/1:28,23:51:99:494,0,613 16 81922813 rs1143687 C T 913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.133;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=2.72;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.105;SOR=0.925 GT:AD:DP:GQ:PL 0/1:51,41:92:99:942,0,1175 16 81941319 rs1143689 C T 2696.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2725,267,0 16 81953081 rs12448130 T C 2826.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.659 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2855,287,0 16 81954789 rs12446127 C G 567.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.173;SOR=0.582 GT:AD:DP:GQ:PL 0/1:22,23:45:99:596,0,581 16 81957106 rs142825971 A G 1172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.585;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=2.152;SOR=1.227 GT:AD:DP:GQ:PL 0/1:43,48:91:99:1201,0,927 16 81971403 rs1071644 T C 4037.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4066,381,0 16 82033810 rs11542462 G A 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.83;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.292;SOR=0.811 GT:AD:DP:GQ:PL 0/1:77,87:164:99:2168,0,1914 16 82203711 rs2303264 G T 1640.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.18;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,38:38:99:1|1:82203705_A_C:1669,114,0 16 82203742 rs1134847 T C 2021.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.93;SOR=0.929 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,45:45:99:1|1:82203742_T_C:2050,138,0 16 82203758 rs2303262 C T 2266.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.45;SOR=0.9 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,51:51:99:1|1:82203742_T_C:2295,154,0 16 82203768 rs2303261 G T 2328.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.94;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,53:53:99:1|1:82203742_T_C:2357,160,0 16 82203786 rs2303260 C G 455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.86;ReadPosRankSum=-1.992;SOR=0.923 GT:AD:DP:GQ:PL 0/1:35,23:58:99:484,0,869 16 82673047 rs4782724 C T 3180.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.66;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3209,344,0 16 83065664 rs6565105 G A 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4590,468,0 16 83214480 rs7188594 C A 669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.049;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.766;SOR=0.664 GT:AD:DP:GQ:PL 0/1:26,28:54:99:698,0,625 16 83933296 rs446036 T C 6564.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6593,638,0 16 83984776 rs28555129 A C 2254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.077;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.022;QD=11.62;ReadPosRankSum=-1.297;SOR=0.657 GT:AD:DP:GQ:PL 0/1:99,95:196:99:2283,0,2424 16 83984844 rs2244899 A C 9089.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=44.13;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,206:206:99:1|1:83984844_A_C:9118,620,0 16 83984850 rs2244898 C G 8922.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=45.29;SOR=0.766 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,197:197:99:1|1:83984844_A_C:8951,605,0 16 83994569 rs2136662 G T 1620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.71;ReadPosRankSum=-0.715;SOR=0.423 GT:AD:DP:GQ:PL 0/1:35,62:97:99:1649,0,822 16 84035919 rs5012585 T C 2039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.113;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=2.133;QD=12.75;ReadPosRankSum=-0.073;SOR=0.535 GT:AD:DP:GQ:PL 0/1:75,85:160:99:2068,0,1639 16 84070500 rs1317524 C G 1826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.723;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=6.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.35;ReadPosRankSum=-1.591;SOR=1.361 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,53:119:99:0|1:84070500_C_G:1855,0,5316 16 84070510 rs1876962 G A 1588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.65;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=5.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.28;ReadPosRankSum=-0.676;SOR=1.343 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,42:104:99:0|1:84070500_C_G:1617,0,5315 16 84070514 rs1876960 A C 1468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.939;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=5.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=-1.094;SOR=1.27 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,41:101:99:0|1:84070500_C_G:1497,0,5243 16 84088047 rs11607 C T 2300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.035;SOR=0.758 GT:AD:DP:GQ:PL 0/1:90,96:186:99:2329,0,2261 16 84115483 rs3743631 G A 986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.299;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.202;SOR=1.014 GT:AD:DP:GQ:PL 0/1:54,41:95:99:1015,0,1304 16 84164008 rs34611937 G A 911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.12;ReadPosRankSum=0.554;SOR=0.504 GT:AD:DP:GQ:PL 0/1:84,44:128:99:940,0,2109 16 84203612 rs17856705 A G 9228.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=33.44;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,276:276:99:9257,829,0 16 84203939 rs11644164 C T 4742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.556;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.307;QD=12.65;ReadPosRankSum=1.162;SOR=0.768 GT:AD:DP:GQ:PL 0/1:173,202:375:99:4771,0,3952 16 84209634 rs2288019 C G 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.193;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.87;ReadPosRankSum=-0.49;SOR=0.64 GT:AD:DP:GQ:PL 0/1:69,81:150:99:2258,0,1750 16 84209815 rs2288021 C G 2822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-0.958;SOR=0.697 GT:AD:DP:GQ:PL 0/1:147,119:266:99:2851,0,3720 16 84212779 rs2230131 G A 3827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=0.027;SOR=0.717 GT:AD:DP:GQ:PL 0/1:142,166:308:99:3856,0,3670 16 84212928 rs3743642 G A 3924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.26;SOR=0.741 GT:AD:DP:GQ:PL 0/1:143,165:310:99:3953,0,3490 16 84217062 rs4782591 C T 7111.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.14;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7140,777,0 16 84224967 rs8044695 G A 6647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0;DB;DP=569;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.812;SOR=0.686 GT:AD:DP:GQ:PL 0/1:291,278:569:99:6676,0,7424 16 84228199 rs11864937 G T 2997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.585;SOR=0.616 GT:AD:DP:GQ:PL 0/1:114,126:240:99:3026,0,2942 16 84228770 rs11149631 G C 5028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=412;ExcessHet=3.0103;FS=2.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=1.079;SOR=0.75 GT:AD:DP:GQ:PL 0/1:219,193:412:99:5057,0,5799 16 84229559 rs2303238 T C 4114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.101;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=-0.123;SOR=0.733 GT:AD:DP:GQ:PL 0/1:141,158:299:99:4143,0,3456 16 84230376 rs2303242 T C 2826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-1.392;QD=12.68;ReadPosRankSum=-0.144;SOR=0.667 GT:AD:DP:GQ:PL 0/1:110,113:223:99:2855,0,2628 16 84230500 rs2303243 A C 2295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.847;SOR=0.763 GT:AD:DP:GQ:PL 0/1:84,85:169:99:2324,0,2244 16 84255809 rs56796255 T C 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.511;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-0.365;SOR=0.979 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1314,0,1285 16 84256410 rs7196482 C T 3447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.265;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.735;SOR=0.875 GT:AD:DP:GQ:PL 0/1:190,142:332:99:3476,0,5017 16 84270381 rs244811 G A 6035.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6064,579,0 16 84270476 rs11646443 G A 3664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.4;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=-1.081;SOR=0.77 GT:AD:DP:GQ:PL 0/1:149,153:302:99:3693,0,3511 16 84402275 rs62048787 G C 1769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=4.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=0.785;SOR=0.392 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1798,0,1955 16 84444349 rs247818 A C 4049.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4078,387,0 16 84473137 rs247904 G C 4050.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=28.93;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4079,419,0 16 84476200 rs247897 A T 1484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.22;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.149;SOR=0.641 GT:AD:DP:GQ:PL 0/1:79,70:149:99:1513,0,1778 16 84476224 rs2288581 G T 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.695;SOR=0.639 GT:AD:DP:GQ:PL 0/1:54,64:118:99:1480,0,1317 16 84485573 rs247885 C A 8359.77 PASS AC=2;AF=1;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,300:300:99:8388,897,0 16 84493144 rs410388 C G 4336.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4365,410,0 16 84494275 rs2241640 C T 6051.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6080,579,0 16 84516309 rs433293 G A 2354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=-0.485;SOR=0.925 GT:AD:DP:GQ:PL 0/1:131,107:238:99:2383,0,3127 16 84520223 rs431629 A T 3163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.176;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=1.678;SOR=0.611 GT:AD:DP:GQ:PL 0/1:94,121:215:99:3192,0,2215 16 84520325 rs431389 T C 3270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.302;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.253;SOR=0.628 GT:AD:DP:GQ:PL 0/1:131,126:257:99:3299,0,3060 16 84520396 rs422145 A G 7148.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7177,672,0 16 84520537 rs431818 T C 6848.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6877,672,0 16 84522867 rs422918 C A 2521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.065;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=3.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.905;SOR=0.96 GT:AD:DP:GQ:PL 0/1:119,104:223:99:2550,0,2869 16 84522897 rs436278 G C 3238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.271;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=1.213;SOR=0.965 GT:AD:DP:GQ:PL 0/1:132,127:259:99:3267,0,3301 16 84690467 rs72797510 C T 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.511;SOR=0.701 GT:AD:DP:GQ:PL 0/1:48,66:114:99:1566,0,1206 16 84691044 rs3751762 C T 3342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-0.553;SOR=0.761 GT:AD:DP:GQ:PL 0/1:125,141:266:99:3371,0,3063 16 84778222 rs3751759 G A 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.883;SOR=0.631 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1236,0,1308 16 84778762 rs4553618 C T 4008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-1.014;QD=11.42;ReadPosRankSum=0.642;SOR=0.643 GT:AD:DP:GQ:PL 0/1:179,172:351:99:4037,0,4336 16 84779248 rs7185949 T G 2872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.558;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=6.341;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.987;QD=12.33;ReadPosRankSum=-0.102;SOR=1.094 GT:AD:DP:GQ:PL 0/1:119,114:233:99:2901,0,2806 16 84792371 rs71386866 C G 629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.85;ReadPosRankSum=1.041;SOR=0.787 GT:AD:DP:GQ:PL 0/1:58,34:92:99:658,0,1381 16 84792428 rs7202832 C T 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.971;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=0.762;SOR=0.765 GT:AD:DP:GQ:PL 0/1:33,48:81:99:1105,0,648 16 84796603 rs12932018 A G 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=0.578;SOR=0.573 GT:AD:DP:GQ:PL 0/1:42,39:81:99:888,0,1038 16 84808824 rs774298 C G 1218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.797;SOR=0.739 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1247,0,1431 16 84879464 rs12051468 A G 1419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.298;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=1.187;SOR=0.656 GT:AD:DP:GQ:PL 0/1:58,61:119:99:1448,0,1322 16 84882974 rs4783087 C A 3948.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=1.17 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3977,375,0 16 84883102 rs8061351 C T 5406.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=30.72;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5435,527,0 16 85009970 rs7195377 A G 2771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=6.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=0.939;SOR=1.076 GT:AD:DP:GQ:PL 0/1:117,110:227:99:2800,0,2774 16 85011622 rs8044638 G A 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.435;SOR=0.842 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1105,0,910 16 85015541 rs16975086 G A 3382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.607;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.232;SOR=0.901 GT:AD:DP:GQ:PL 0/1:141,133:274:99:3411,0,3333 16 85100863 rs145719525 G A 2462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.291;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.341;SOR=0.715 GT:AD:DP:GQ:PL 0/1:124,106:230:99:2491,0,3659 16 85112002 rs2291967 T G 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.419;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=0.907;SOR=1.09 GT:AD:DP:GQ:PL 0/1:65,39:104:99:1011,0,1534 16 85141292 rs17200798 T C 795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=2.312;SOR=0.766 GT:AD:DP:GQ:PL 0/1:37,34:71:99:824,0,959 16 85141556 rs67587184 G A 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=4.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.987;SOR=1.259 GT:AD:DP:GQ:PL 0/1:42,42:84:99:1059,0,1179 16 85141661 rs17200833 G A 1584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.225;SOR=0.645 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1613,0,1824 16 85145977 rs9931038 T C 1174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.8;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.32;ReadPosRankSum=0.488;SOR=0.937 GT:AD:DP:GQ:PL 0/1:27,45:72:99:1203,0,643 16 85690878 rs34805959 C CA 1236.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.434;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.5;MQ=60.65;MQRankSum=2.305;QD=15.08;ReadPosRankSum=-1.871;SOR=1.158 GT:AD:DP:GQ:PL 0/1:41,41:82:99:1274,0,1225 16 85704584 rs2303202 A G 1145.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1174,120,0 16 85706047 rs9940601 A C 1983.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.55;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2012,215,0 16 85711860 rs1053328 C T 1272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.318;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-0.318;SOR=0.636 GT:AD:DP:GQ:PL 0/1:63,57:120:99:1301,0,1451 16 85814899 rs3081701 T TAGTC 2386.73 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.57;QD=43.4;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2424,165,0 16 85838532 rs2733965 A G 3616.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.49;SOR=1.721 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3645,324,0 16 85838653 rs2599091 T C 5657.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5686,534,0 16 86565826 rs3751803 C G 5787.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5816,582,0 16 86585743 rs34005514 G C 2573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.458;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=4.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.46;ReadPosRankSum=0.212;SOR=0.563 GT:AD:DP:GQ:PL 0/1:77,101:178:99:2602,0,2071 16 86585905 rs8046613 C A 3837.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=1.249 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3866,396,0 16 87426028 rs8043569 T C 8477.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.396 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8506,858,0 16 87436720 rs1054521 G T 5213.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.48;QD=30.67;SOR=1.311 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5242,509,0 16 87445363 rs1050846 G A 5423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-0.928;SOR=0.683 GT:AD:DP:GQ:PL 0/1:186,219:405:99:5452,0,4614 16 87445839 rs3748400 C T 9135.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,295:295:99:9164,880,0 16 87446053 rs2042395 G A 9350.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,305:305:99:9379,915,0 16 87678144 rs918368 T C 3053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.988;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=4.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=1.256;SOR=0.85 GT:AD:DP:GQ:PL 0/1:126,115:241:99:3082,0,3360 16 87678249 rs9934222 G A 3166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.321;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.814;SOR=0.698 GT:AD:DP:GQ:PL 0/1:165,128:293:99:3195,0,4117 16 87723838 rs34767155 T C 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.705;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=0.324;SOR=0.623 GT:AD:DP:GQ:PL 0/1:107,70:177:99:1643,0,2830 16 87742092 rs2290018 G A 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.74;ReadPosRankSum=0.667;SOR=0.641 GT:AD:DP:GQ:PL 0/1:57,36:93:99:748,0,1472 16 87748198 rs2081981 G C 2829.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2858,257,0 16 87764267 rs9934565 A T 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.596;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.18;ReadPosRankSum=1.994;SOR=0.949 GT:AD:DP:GQ:PL 0/1:51,33:84:99:799,0,1175 16 87782396 rs34779002 C A 1977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=4.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-1.406;SOR=0.828 GT:AD:DP:GQ:PL 0/1:103,93:196:99:2006,0,2354 16 87788833 rs17772510 G T 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.101;SOR=0.581 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1216,0,1793 16 87788836 rs17699859 G A 1005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.514;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.335;SOR=0.757 GT:AD:DP:GQ:PL 0/1:54,47:103:99:1034,0,2156 16 87788864 rs2303771 G A 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-1.689;SOR=0.93 GT:AD:DP:GQ:PL 0/1:47,46:93:99:1079,0,1078 16 87795580 rs2303772 G C 1935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.244;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=5.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=1.272;SOR=1.132 GT:AD:DP:GQ:PL 0/1:86,77:163:99:1964,0,2175 16 88008712 rs71156278 C CT 2656.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.017;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.795;QD=21.78;ReadPosRankSum=-0.484;SOR=1.011 GT:AD:DP:GQ:PL 0/1:46,76:122:99:2694,0,1440 16 88017809 rs3815820 C T 4493.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.57;QD=30.16;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4522,446,0 16 88052161 rs7499814 C A 2652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.869;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-1.14;QD=10.7;ReadPosRankSum=-0.214;SOR=0.793 GT:AD:DP:GQ:PL 0/1:141,107:248:99:2681,0,3599 16 88061150 rs74740586 C T 6587.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.81;QD=28.64;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6616,688,0 16 88494947 rs11648572 T C 8031.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,246:246:99:8060,738,0 16 88494976 rs11640794 A C 7374.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.22;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,222:222:99:7403,665,0 16 88495407 rs7199961 G C 10245.8 PASS AC=2;AF=1;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,344:344:99:10274,1031,0 16 88495654 rs12927001 A G 7998.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,261:261:99:8027,783,0 16 88496008 rs12918876 T C 4056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=2.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-0.45;SOR=0.579 GT:AD:DP:GQ:PL 0/1:179,178:357:99:4085,0,4221 16 88497031 rs9924504 T C 7738.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.55;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7767,672,0 16 88497400 rs9938800 G A 9103.77 PASS AC=2;AF=1;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9132,895,0 16 88497446 rs7197071 A G 7845.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.29;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7874,729,0 16 88498221 rs4782300 C T 8511.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8540,825,0 16 88498297 rs12445417 T G 2656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.63;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=4.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=1.05;SOR=0.942 GT:AD:DP:GQ:PL 0/1:142,116:258:99:2685,0,3576 16 88499539 rs9931465 C G 11061.8 PASS AC=2;AF=1;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,359:359:99:11090,1076,0 16 88501034 rs12598474 G C 3306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.43;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=9.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=0.399;SOR=1.214 GT:AD:DP:GQ:PL 0/1:113,124:237:99:3335,0,2960 16 88501971 rs3812956 T A 3279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=4.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.903;SOR=0.896 GT:AD:DP:GQ:PL 0/1:148,136:284:99:3308,0,3621 16 88502482 rs3812953 C T 2967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.615;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=0.106;SOR=0.682 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,118:206:99:0|1:88502482_C_T:2996,0,2400 16 88502505 rs1983014 A G 9465.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.45;SOR=1.008 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,267:267:99:1|1:88502482_C_T:9494,801,0 16 88504850 rs1105066 G C 4192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=-0.304;SOR=0.807 GT:AD:DP:GQ:PL 0/1:142,157:299:99:4221,0,4124 16 88504868 rs904783 A G 9410.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,292:292:99:9439,876,0 16 88505635 rs4782301 A G 3957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.694;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.19;SOR=0.834 GT:AD:DP:GQ:PL 0/1:205,165:370:99:3986,0,4751 16 88505734 rs4782362 C T 4794.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=1.658 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4823,444,0 16 88552370 rs3751673 A G 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.062;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.193;SOR=0.729 GT:AD:DP:GQ:PL 0/1:100,90:190:99:1956,0,2538 16 88593209 rs199766456 CCT C 488.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.612;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=11.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.65;ReadPosRankSum=0.685;SOR=0.108 GT:AD:DP:GQ:PL 0/1:75,30:105:99:526,0,1796 16 88593210 rs35678431 CT C 1483.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=17.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=-0.041;SOR=2.795 GT:AD:DP:GQ:PL 0/1:38,66:104:99:1521,0,782 16 88599695 rs67549438 GGA G 12383.7 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.71;SOR=1.014 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,277:277:99:1|1:88599695_GGA_G:12421,835,0 16 88599700 rs67322929 CT C 12478.7 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.38;SOR=1.016 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,275:275:99:1|1:88599695_GGA_G:12516,843,0 16 88599702 rs67873604 CTGG C 12418.7 PASS AC=2;AF=1;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=45.32;SOR=0.971 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,274:274:99:1|1:88599695_GGA_G:12456,837,0 16 88600079 rs13335396 C G 6046.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6075,614,0 16 88644005 rs899728 A G 9112.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,287:287:99:9141,861,0 16 88713236 rs4673 A G 3014.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.13;SOR=1.13 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3043,273,0 16 88713501 rs4782393 A G 4715.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.07;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4744,502,0 16 88717386 rs8053867 T C 5084.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5113,483,0 16 88724347 rs2279258 G T 6923.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.7;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,250:250:99:6952,749,0 16 88763958 rs11076700 G A 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-2.662;SOR=0.607 GT:AD:DP:GQ:PL 0/1:39,45:84:99:1024,0,824 16 88767769 rs2306049 G C 2942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.373;SOR=0.71 GT:AD:DP:GQ:PL 0/1:130,127:257:99:2971,0,3155 16 88772928 rs880234 C T 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.846;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.994;SOR=0.823 GT:AD:DP:GQ:PL 0/1:51,47:98:99:1289,0,1343 16 88779132 rs2290895 C T 2948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=1.711;SOR=0.666 GT:AD:DP:GQ:PL 0/1:94,123:217:99:2977,0,2249 16 88779323 rs12148926 C T 1076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.313;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.428;QD=15.17;ReadPosRankSum=-0.6;SOR=0.533 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,33:71:99:0|1:88779323_C_T:1105,0,1374 16 88779328 rs67815044 GC G 2501.73 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=37.91;SOR=2.448 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,66:66:99:1|1:88779323_C_T:2539,205,0 16 88779739 rs11549837 A G 1416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-1.059;SOR=0.61 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,64:137:99:0|1:88779739_A_G:1445,0,2773 16 88779753 rs73262667 C T 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.582;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,81:148:99:1|0:88779739_A_G:1805,0,2511 16 88780090 rs2290904 G A 2838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.527;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.267;SOR=0.635 GT:AD:DP:GQ:PL 0/1:122,116:238:99:2867,0,2966 16 88780634 rs11278302 AGGTGTG A 5932.73 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.78;QD=44.27;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:5970,404,0 16 88781040 rs8059048 A G 3251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-0.706;SOR=0.633 GT:AD:DP:GQ:PL 0/1:116,125:241:99:3280,0,3025 16 88781125 rs8043637 T C 7261.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.71;ReadPosRankSum=-1.038;SOR=0.303 GT:AD:DP:GQ:PL 1/1:1,228:229:99:7290,645,0 16 88782217 rs35544968 G A 2540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=4.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-2.461;SOR=0.549 GT:AD:DP:GQ:PL 0/1:123,112:235:99:2569,0,3052 16 88782676 rs2290902 A G 5812.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5841,548,0 16 88783071 rs35686439 G A 2736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.606;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.609;SOR=0.605 GT:AD:DP:GQ:PL 0/1:116,118:234:99:2765,0,2658 16 88783449 rs8057031 C G 5266.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5295,491,0 16 88783521 rs6500491 T C 5000.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5029,503,0 16 88787704 rs8043924 G C 6723.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6752,663,0 16 88788477 rs9935872 A G 6517.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.43;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6546,603,0 16 88789666 rs11281795 G GCCTGCT 3869.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.748;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.34;ReadPosRankSum=-0.423;SOR=0.911 GT:AD:DP:GQ:PL 0/1:110,101:211:99:3907,0,5258 16 88792047 rs4782430 A G 2888.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.83;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2917,264,0 16 88792097 rs4782429 A G 1948.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1977,189,0 16 88793103 rs4424896 C G 3318.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.25;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,75:75:99:1|1:88793090_A_G:3347,232,0 16 88802832 rs114153706 G A 2193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-1.645;QD=12.98;ReadPosRankSum=0.418;SOR=0.635 GT:AD:DP:GQ:PL 0/1:80,89:169:99:2222,0,2026 16 88803982 rs6500493 C G 559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.67;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=-0.708;QD=9.03;ReadPosRankSum=-0.677;SOR=1.037 GT:AD:DP:GQ:PL 0/1:40,22:62:99:588,0,1115 16 88804349 rs112081600 G T 5249.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.11;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.49;ReadPosRankSum=-0.251;SOR=0.59 GT:AD:DP:GQ:PL 1/1:3,188:191:99:5278,536,0 16 88807896 rs7404939 G A 4396.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4425,446,0 16 88870967 rs475667 T C 2489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.397;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.376;SOR=0.758 GT:AD:DP:GQ:PL 0/1:119,98:217:99:2518,0,2771 16 88872145 rs507329 T C 8497.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8526,804,0 16 88872229 rs480727 A G 2683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.998;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=0.305;SOR=0.735 GT:AD:DP:GQ:PL 0/1:114,101:215:99:2712,0,2905 16 88872511 rs510862 T C 1783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.4;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.401;SOR=0.872 GT:AD:DP:GQ:PL 0/1:92,83:175:99:1812,0,2078 16 88874632 rs572275 C G 3357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.397;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=3.073;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.008;SOR=0.79 GT:AD:DP:GQ:PL 0/1:170,139:309:99:3386,0,4046 16 88884466 rs2303271 C T 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.984;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.303;SOR=0.767 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1786,0,1925 16 88891240 rs2303269 C A 1612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.476;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=1.105;SOR=0.476 GT:AD:DP:GQ:PL 0/1:71,72:143:99:1641,0,1866 16 88901673 rs35232749 G A 2193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.193;SOR=0.657 GT:AD:DP:GQ:PL 0/1:112,96:208:99:2222,0,3021 16 88902277 rs17603837 G A 1281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.756;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-0.998;SOR=0.941 GT:AD:DP:GQ:PL 0/1:63,55:118:99:1310,0,1802 16 88904086 rs3743544 A G 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=4.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.74;ReadPosRankSum=-1.119;SOR=0.42 GT:AD:DP:GQ:PL 0/1:58,73:131:99:1959,0,1497 16 88926089 rs71395334 C T 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.354;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=0.258;SOR=1.005 GT:AD:DP:GQ:PL 0/1:66,54:120:99:1210,0,1745 16 89167075 rs11273288 C CCCCAGGAGGCTCCCGGGAG 2865.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.343;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=1.253;SOR=0.745 GT:AD:DP:GQ:PL 0/1:151,68:219:99:2903,0,6102 16 89167094 rs7188200 T C 2054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.12;ReadPosRankSum=-0.95;SOR=0.56 GT:AD:DP:GQ:PL 0/1:161,92:253:99:2083,0,4160 16 89167140 rs7201122 G C 9996.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,316:316:99:10025,948,0 16 89167395 rs6500526 C T 5967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0;DB;DP=421;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=-0.891;SOR=0.784 GT:AD:DP:GQ:PGT:PID:PL 0/1:258,163:421:99:0|1:89167395_C_T:5996,0,11368 16 89167404 rs7193255 T C 6136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.189;ClippingRankSum=0;DB;DP=424;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.47;ReadPosRankSum=-2.08;SOR=0.721 GT:AD:DP:GQ:PGT:PID:PL 0/1:257,167:424:99:0|1:89167395_C_T:6165,0,11221 16 89167431 rs6500527 G C 5638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.818;ClippingRankSum=0;DB;DP=417;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.709;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:258,158:416:99:0|1:89167431_G_C:5667,0,13077 16 89167443 rs6500528 T C 5286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.004;ClippingRankSum=0;DB;DP=402;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=1.449;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:256,145:401:99:0|1:89167431_G_C:5315,0,13173 16 89167458 rs6500529 C A 5088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=0.974;SOR=0.835 GT:AD:DP:GQ:PGT:PID:PL 0/1:224,141:365:99:0|1:89167431_G_C:5117,0,11744 16 89180883 rs3743979 G A 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.475;SOR=0.73 GT:AD:DP:GQ:PL 0/1:143,128:271:99:3034,0,3561 16 89246670 rs59865771 T C 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.364;SOR=0.693 GT:AD:DP:GQ:PL 0/1:76,70:146:99:1711,0,1977 16 89253972 rs188390871 C T 1152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-0.18;SOR=0.763 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1181,0,1518 16 89258747 rs75791347 A C 2662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.326;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.972;SOR=0.613 GT:AD:DP:GQ:PL 0/1:129,105:234:99:2691,0,3134 16 89259993 rs3815615 A G 2015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.602;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=-0.659;SOR=1.336 GT:AD:DP:GQ:PL 0/1:74,75:149:99:2044,0,1590 16 89262419 rs35146933 G A 3527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=4.164;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.03;SOR=0.486 GT:AD:DP:GQ:PL 0/1:123,146:269:99:3556,0,3084 16 89262431 rs2287353 G A 3232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.243;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.095;SOR=0.849 GT:AD:DP:GQ:PL 0/1:157,130:287:99:3261,0,3869 16 89262657 rs117169628 G A 2438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.98;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=4.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=1.623;SOR=0.652 GT:AD:DP:GQ:PL 0/1:138,103:241:99:2467,0,3644 16 89265087 rs61732365 A G 3780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.614;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.95;ReadPosRankSum=-0.639;SOR=0.747 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,102:223:99:0|1:89265087_A_G:3809,0,6620 16 89265101 rs74640353 C T 4149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.44;ReadPosRankSum=-0.828;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,114:238:99:0|1:89265087_A_G:4178,0,6795 16 89265466 rs12926888 A G 3660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-1.227;SOR=0.663 GT:AD:DP:GQ:PL 0/1:115,155:270:99:3689,0,2469 16 89291210 rs10625512 G GGTGA 4761.73 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=44.5;SOR=1.056 GT:AD:DP:GQ:PL 1/1:0,107:107:99:4799,322,0 16 89291945 rs11464538 A AT 2004.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.174;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=2.392;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.38;ReadPosRankSum=-0.952;SOR=0.81 GT:AD:DP:GQ:PL 1/1:3,73:83:99:2042,170,0 16 89291948 rs12926996 C T 3828.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=1.005 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,86:86:99:1|1:89291948_C_T:3857,259,0 16 89291951 rs12926997 C T 3899.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.32;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,88:88:99:1|1:89291948_C_T:3928,268,0 16 89293271 rs28417933 A C 6696.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6725,641,0 16 89293614 rs4785626 A G 6587.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6616,626,0 16 89294184 rs4785627 G A 7653.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.21;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7682,785,0 16 89294381 rs28415940 T C 5692.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5721,537,0 16 89294439 rs9921361 G T 5228.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.31;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5257,501,0 16 89294511 rs28638280 C T 5816.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5845,558,0 16 89294595 rs74466939 C T 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.318;SOR=0.723 GT:AD:DP:GQ:PL 0/1:112,122:234:99:2908,0,2780 16 89294697 rs60437616 C T 5640.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5669,554,0 16 89350038 rs2279348 G A 4340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0;DB;DP=375;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.841;SOR=0.708 GT:AD:DP:GQ:PL 0/1:191,184:375:99:4369,0,4646 16 89350178 rs2279349 G A 3425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.309;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.079;SOR=0.661 GT:AD:DP:GQ:PL 0/1:122,130:252:99:3454,0,2981 16 89350911 rs145694621 G C 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.454;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-0.712;SOR=0.747 GT:AD:DP:GQ:PL 0/1:87,81:168:99:2158,0,2234 16 89613123 rs2292954 A G 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.587;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.49;ReadPosRankSum=-1.831;SOR=0.793 GT:AD:DP:GQ:PL 0/1:36,61:97:99:1628,0,745 16 89620328 rs12960 G A 2164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.129;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=1.336;SOR=0.637 GT:AD:DP:GQ:PL 0/1:79,85:164:99:2193,0,2091 16 89627460 rs2280370 T G 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.32;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-0.961;QD=13.53;ReadPosRankSum=-0.649;SOR=0.511 GT:AD:DP:GQ:PL 0/1:62,65:127:99:1747,0,1588 16 89703797 rs34422500 C T 3766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.731;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=1.223;SOR=0.584 GT:AD:DP:GQ:PL 0/1:187,161:348:99:3795,0,4483 16 89704365 rs1126464 G C 4179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.45;SOR=0.694 GT:AD:DP:GQ:PL 0/1:178,176:354:99:4208,0,4331 16 89735923 rs9937322 G C 3757.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.25;SOR=1.449 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3786,339,0 16 89760652 rs2162943 C T 3097.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3126,329,0 16 89763214 rs4247353 T C 8102.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,257:257:99:8131,771,0 16 89777761 rs12920315 C T 4500.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4529,476,0 16 89779139 rs111488775 AGCT A 1429.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.228;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.81;ReadPosRankSum=1.628;SOR=0.811 GT:AD:DP:GQ:PL 0/1:38,38:76:99:1467,0,1794 16 89782989 rs7206570 A G 7752.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7781,738,0 16 89783187 rs4785706 C T 6350.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.393 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6379,626,0 16 89799950 rs17177891 C T 1988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.84;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.374;SOR=0.824 GT:AD:DP:GQ:PL 0/1:72,87:159:99:2017,0,1680 16 89805914 rs9282681 T C 1932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.038;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=0.238;SOR=0.843 GT:AD:DP:GQ:PL 0/1:82,84:166:99:1961,0,1847 16 89807233 rs11649210 C G 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.946;SOR=0.658 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1260,0,1097 16 89809319 rs1800358 T C 2361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.162;SOR=0.699 GT:AD:DP:GQ:PL 0/1:78,105:183:99:2390,0,1700 16 89815152 rs17233497 G A 1932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.517;SOR=0.855 GT:AD:DP:GQ:PL 0/1:75,89:164:99:1961,0,1688 16 89816314 rs17227064 A G 932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.65;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.995;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=0.848;SOR=1.11 GT:AD:DP:GQ:PL 0/1:66,36:102:99:961,0,1648 16 89825065 rs17226980 G A 2233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.34;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=1.639;SOR=0.666 GT:AD:DP:GQ:PL 0/1:112,106:218:99:2262,0,2585 16 89828437 rs17233253 A G 1163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.31;ReadPosRankSum=-0.158;SOR=0.786 GT:AD:DP:GQ:PL 0/1:26,50:76:99:1192,0,532 16 89836323 rs7195066 C T 2896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-2.041;SOR=0.727 GT:AD:DP:GQ:PL 0/1:130,132:262:99:2925,0,3059 16 89839766 rs17232910 G C 1139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.993;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.918;SOR=0.76 GT:AD:DP:GQ:PL 0/1:60,47:107:99:1168,0,1415 16 89845194 rs1800337 A G 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.34;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.34;ReadPosRankSum=0.017;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,70:116:99:0|1:89845178_T_TAC:2736,0,1825 16 89849480 rs2239359 C T 3227.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3256,330,0 16 89857935 rs11646374 G A 2782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-0.81;SOR=0.705 GT:AD:DP:GQ:PL 0/1:106,128:234:99:2811,0,2409 16 89858417 rs1800331 C A 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.027;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.325;SOR=0.698 GT:AD:DP:GQ:PL 0/1:56,52:108:99:1336,0,1334 16 89862434 rs11648881 T C 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.055;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.93;ReadPosRankSum=-0.314;SOR=0.746 GT:AD:DP:GQ:PL 0/1:32,54:86:99:1398,0,757 16 89866043 rs7190823 T C 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.277;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.465;SOR=0.924 GT:AD:DP:GQ:PL 0/1:49,43:92:99:982,0,1034 16 89869761 rs1800286 T C 2313.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2342,221,0 16 89916879 rs146569219 C CGAG 4686.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.022;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=2.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.55;ReadPosRankSum=-0.246;SOR=0.871 GT:AD:DP:GQ:PL 0/1:143,124:272:99:4724,0,5768 16 89920957 rs12598737 A G 2836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.497;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.237;SOR=0.616 GT:AD:DP:GQ:PL 0/1:141,111:252:99:2865,0,3333 16 89925556 rs7200842 G A 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.19;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-2.254;SOR=0.651 GT:AD:DP:GQ:PL 0/1:59,50:109:99:1158,0,1510 16 89952385 . C CGCCCTTCTCTGTGGCT 634.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.483;ClippingRankSum=0;DP=99;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.47;ReadPosRankSum=-2.143;SOR=0.883 GT:AD:DP:GQ:PGT:PID:PL 0/1:53,32:85:99:0|1:89952385_C_CGCCCTTCTCTGTGGCT:672,0,3855 16 89954138 rs9922515 G C 1064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=0.297;SOR=0.553 GT:AD:DP:GQ:PL 0/1:76,53:129:99:1093,0,1853 16 89962394 rs2293586 A G 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-1.622;SOR=0.706 GT:AD:DP:GQ:PL 0/1:53,64:117:99:1563,0,1256 16 89965055 rs11648433 G A 1658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.76;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=3.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.05;SOR=0.97 GT:AD:DP:GQ:PL 0/1:96,68:164:99:1687,0,2271 16 89967217 rs62052184 T C 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=-0.986;SOR=0.715 GT:AD:DP:GQ:PL 0/1:123,74:197:99:1707,0,3093 16 89975496 rs57940434 G A 2388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=3.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.381;SOR=0.948 GT:AD:DP:GQ:PL 0/1:105,96:201:99:2417,0,2835 16 89985940 rs2228479 G A 2893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=5.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.453;SOR=0.75 GT:AD:DP:GQ:PL 0/1:116,117:233:99:2922,0,2946 16 89986608 rs2228478 A G 1996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.301;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=2.478;SOR=0.59 GT:AD:DP:GQ:PL 0/1:71,83:154:99:2025,0,1560 16 90021569 rs62052225 T C 1652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.244;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=-0.912;SOR=0.681 GT:AD:DP:GQ:PL 0/1:48,65:113:99:1681,0,1072 16 90021685 rs12597913 A G 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.408;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.896;SOR=0.741 GT:AD:DP:GQ:PL 0/1:62,75:137:99:1828,0,1413 16 90025640 rs8166 G C 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.75;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=-0.022;SOR=0.687 GT:AD:DP:GQ:PL 0/1:61,68:129:99:1845,0,1605 16 90037828 rs4785755 G A 178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=16.25;ReadPosRankSum=0.586;SOR=1.27 GT:AD:DP:GQ:PL 0/1:4,7:11:99:207,0,144 16 90075226 rs4362387 C T 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.276;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=2.306;SOR=0.644 GT:AD:DP:GQ:PL 0/1:120,98:218:99:2347,0,2789 16 90103659 rs17178299 G A 1815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=1.183;SOR=0.724 GT:AD:DP:GQ:PL 0/1:89,74:163:99:1844,0,2231 16 90106746 rs61734731 C T 2109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.911;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.752;SOR=0.823 GT:AD:DP:GQ:PL 0/1:108,89:197:99:2138,0,2580 16 90109711 rs3743825 A G 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.227;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=1.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-1.771;SOR=0.785 GT:AD:DP:GQ:PL 0/1:117,114:231:99:2751,0,2798 16 90124871 rs7206111 G T 2736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-0.208;SOR=0.558 GT:AD:DP:GQ:PL 0/1:137,126:263:99:2765,0,3334 16 90130136 rs2078478 C T 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-1.902;QD=9.99;ReadPosRankSum=0.137;SOR=0.859 GT:AD:DP:GQ:PL 0/1:137,114:251:99:2536,0,3370 16 90141355 rs12925933 A C 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.074;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=-0.534;QD=10.71;ReadPosRankSum=-0.885;SOR=0.905 GT:AD:DP:GQ:PL 0/1:83,72:155:99:1689,0,2006 17 6115 rs61739713 G C 5513.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5542,515,0 17 6157 rs2294076 A G 5039.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5068,510,0 17 13905 rs6565705 G A 3560.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.82;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3589,384,0 17 14008 rs2294075 G C 2740.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=1.204 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2769,267,0 17 171098 rs73971738 T G 2286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-1.096;SOR=0.719 GT:AD:DP:GQ:PL 0/1:122,109:231:99:2315,0,2943 17 171137 rs78269977 C A 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.132;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.705;SOR=0.599 GT:AD:DP:GQ:PL 0/1:113,92:205:99:2107,0,2726 17 260299 rs4581766 G A 5946.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5975,607,0 17 423051 rs2034088 T C 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.029;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=1.524;SOR=0.804 GT:AD:DP:GQ:PL 0/1:43,46:89:99:1150,0,1003 17 465775 rs2075443 G A 2297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.368;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.429;SOR=0.882 GT:AD:DP:GQ:PL 0/1:112,94:206:99:2326,0,2720 17 505139 rs56807006 G A 1162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.764;SOR=0.883 GT:AD:DP:GQ:PL 0/1:42,49:91:99:1191,0,959 17 600735 rs4968100 A G 1038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=1.933;SOR=0.441 GT:AD:DP:GQ:PL 0/1:30,44:74:99:1067,0,707 17 636320 rs111405529 T TCTC 1357.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.309;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.61;ReadPosRankSum=-0.744;SOR=0.814 GT:AD:DP:GQ:PL 0/1:53,34:87:99:1395,0,2302 17 648186 rs7813 G A 2385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.408;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.337;SOR=0.671 GT:AD:DP:GQ:PL 0/1:88,99:187:99:2414,0,2081 17 648498 rs2740349 C T 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=0.812;SOR=0.72 GT:AD:DP:GQ:PL 0/1:71,53:124:99:1339,0,1969 17 649232 rs3744741 C T 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.62;ReadPosRankSum=1.501;SOR=0.732 GT:AD:DP:GQ:PL 0/1:60,94:154:99:2433,0,1372 17 649547 rs910925 G C 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.23;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=6.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.871;SOR=1.16 GT:AD:DP:GQ:PL 0/1:88,87:175:99:2389,0,2177 17 649935 rs2740348 G C 2010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=-2.081;SOR=0.636 GT:AD:DP:GQ:PL 0/1:63,82:145:99:2039,0,1609 17 685640 rs2273454 G T 2656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.127;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-0.212;SOR=0.787 GT:AD:DP:GQ:PL 0/1:104,102:206:99:2685,0,2669 17 910401 rs2586305 G A 2997.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.5;MQ=57.2;MQRankSum=2.534;QD=11.23;ReadPosRankSum=-1.31;SOR=0.871 GT:AD:DP:GQ:PL 0/1:134,133:267:99:3026,0,3287 17 934898 rs9903778 G A 2678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.976;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=10.825;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=2.243;QD=10.22;ReadPosRankSum=1.144;SOR=0.924 GT:AD:DP:GQ:PL 0/1:145,117:262:99:2707,0,4250 17 934984 . C CGG 4462.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.765;ClippingRankSum=0;DP=352;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=2.118;QD=14.93;ReadPosRankSum=0.681;SOR=0.65 GT:AD:DP:GQ:PL 0/1:165,134:314:99:4500,0,5790 17 960221 rs2304959 C G 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=9.564;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.87;ReadPosRankSum=-2.009;SOR=1.462 GT:AD:DP:GQ:PL 0/1:34,44:78:99:1188,0,799 17 961304 rs2260448 C A 2183.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2212,216,0 17 970413 rs2262150 C T 5660.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.45;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,214:214:99:5689,631,0 17 986742 rs2257468 A G 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=4.332;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.614;SOR=0.344 GT:AD:DP:GQ:PL 0/1:38,44:82:99:1025,0,868 17 1183354 rs6502774 T C 7352.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7381,708,0 17 1183464 rs6502776 A G 7356.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.945 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7385,737,0 17 1264611 rs55734488 TA T 433.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=1.706;QD=6.38;ReadPosRankSum=0.114;SOR=0.916 GT:AD:DP:GQ:PL 0/1:41,27:85:99:471,0,814 17 1265304 . TA T 36.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=3.65;QD=0.71;ReadPosRankSum=-1.984;SOR=0.355 GT:AD:DP:GQ:PL 0/1:42,10:52:74:74,0,915 17 1359363 rs2229075 T G 7667.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7696,711,0 17 1370542 rs2302458 C A 2186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.72;SOR=0.668 GT:AD:DP:GQ:PL 0/1:89,98:187:99:2215,0,1995 17 1371123 rs8072859 T C 2793.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.28;SOR=1.55 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,77:77:99:1|1:1371088_T_C:2822,231,0 17 1373518 rs9905106 T C 6560.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,230:230:99:6589,686,0 17 1373612 rs8081370 C T 5035.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.57;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5064,450,0 17 1377884 rs2286872 C T 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.602;SOR=0.653 GT:AD:DP:GQ:PL 0/1:82,78:160:99:1799,0,1891 17 1384066 rs4790518 A G 6046.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6075,600,0 17 1387472 rs11538156 C T 2503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.83;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-0.92;QD=9.9;ReadPosRankSum=0.721;SOR=0.559 GT:AD:DP:GQ:PL 0/1:136,117:253:99:2532,0,3599 17 1412455 rs5818804 GC G 3955.73 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.27;QD=38.78;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,102:102:99:1|1:1412406_CGTGGGGGTTA_C:3993,306,0 17 1417231 rs61733750 A C 1226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=5.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.106;SOR=0.484 GT:AD:DP:GQ:PL 0/1:62,54:116:99:1255,0,1519 17 1456318 rs2230463 G A 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-1.11;SOR=0.842 GT:AD:DP:GQ:PL 0/1:96,92:188:99:2107,0,2353 17 1494567 rs12953268 G A 8770.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.037 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8799,861,0 17 1516480 rs7219369 T C 3130.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3159,328,0 17 1538546 rs4790250 C T 7245.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=1.128 GT:AD:DP:GQ:PL 1/1:0,223:223:99:7274,669,0 17 1538628 rs3744644 C G 8839.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8868,855,0 17 1540106 rs34849297 G A 1996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=7.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.161;SOR=1.154 GT:AD:DP:GQ:PL 0/1:115,80:195:99:2025,0,3154 17 1542153 rs2272012 G A 2781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.016;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=2.411;SOR=0.561 GT:AD:DP:GQ:PL 0/1:104,125:229:99:2810,0,2539 17 1542190 rs2272011 G A 2165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.37;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.585;SOR=0.633 GT:AD:DP:GQ:PL 0/1:78,99:177:99:2194,0,1948 17 1576369 rs11078563 C T 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=1.336;SOR=0.447 GT:AD:DP:GQ:PL 0/1:60,79:139:99:1779,0,1301 17 1577985 rs11652160 A C 901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.299;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-1.741;SOR=0.871 GT:AD:DP:GQ:PL 0/1:37,34:71:99:930,0,974 17 1578939 rs33965342 C T 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=1.532;SOR=0.612 GT:AD:DP:GQ:PL 0/1:91,105:196:99:2535,0,2161 17 1580929 rs11078565 G C 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-3.145;SOR=0.668 GT:AD:DP:GQ:PL 0/1:82,97:179:99:2246,0,1932 17 1584324 rs7503397 A G 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.099;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.989;SOR=0.525 GT:AD:DP:GQ:PL 0/1:55,63:118:99:1577,0,1396 17 1585130 rs11559305 A G 2201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.831;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=0.271;SOR=0.842 GT:AD:DP:GQ:PL 0/1:76,83:159:99:2230,0,1857 17 1611433 rs4790809 A G 5343.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5372,522,0 17 1629969 rs80035274 C T 2932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.585;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=6.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.047;SOR=0.773 GT:AD:DP:GQ:PL 0/1:115,121:236:99:2961,0,3410 17 1637074 rs3809871 A G 10605.8 PASS AC=2;AF=1;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,331:331:99:10634,992,0 17 1637302 rs3809872 A G 11552.8 PASS AC=2;AF=1;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,370:370:99:11581,1110,0 17 1639458 rs11549259 A G 9211.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9240,929,0 17 1640709 rs1045794 C T 6545.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6574,653,0 17 1648294 rs2070862 C T 5410.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=2.158 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5439,523,0 17 1673276 rs1136287 C T 6802.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,237:237:99:6831,710,0 17 1680002 rs6828 T C 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-1.742;SOR=0.696 GT:AD:DP:GQ:PL 0/1:67,77:144:99:1879,0,1685 17 1686410 rs9902398 T C 2096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.436;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.226;SOR=0.762 GT:AD:DP:GQ:PL 0/1:105,86:191:99:2125,0,2511 17 1703543 rs3809875 G C 2767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.91;ReadPosRankSum=-1.894;SOR=0.629 GT:AD:DP:GQ:PL 0/1:69,105:174:99:2796,0,1688 17 1704296 rs7224496 C A 1989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.166;SOR=0.626 GT:AD:DP:GQ:PL 0/1:84,83:167:99:2018,0,2123 17 1731268 rs8067660 T C 4168.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4197,423,0 17 1733399 rs5030749 A G 7012.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7041,684,0 17 1795180 rs2230931 T C 757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.795;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=-1.271;SOR=0.693 GT:AD:DP:GQ:PL 0/1:54,34:88:99:786,0,1293 17 1940232 rs1131600 A G 3325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.796;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.771;SOR=0.786 GT:AD:DP:GQ:PL 0/1:121,132:253:99:3354,0,2898 17 1943888 rs2236375 T C 3222.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.8;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.31;ReadPosRankSum=-0.874;SOR=1.342 GT:AD:DP:GQ:PL 1/1:2,116:118:99:3251,302,0 17 1960974 rs77393586 C T 3260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=2.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=1.418;SOR=0.835 GT:AD:DP:GQ:PL 0/1:130,133:263:99:3289,0,3346 17 1968983 rs2232486 T C 1656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=10.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-0.499;SOR=0.227 GT:AD:DP:GQ:PL 0/1:56,69:125:99:1685,0,1385 17 2195933 rs3215741 GA G 2782.73 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.63;QD=27.83;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2820,300,0 17 2196150 rs216205 C T 1828.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.71;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1857,198,0 17 2202521 . T C 3164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.493;ClippingRankSum=0;DP=248;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-0.642;SOR=0.804 GT:AD:DP:GQ:PL 0/1:126,122:248:99:3193,0,3010 17 2202943 rs216196 T C 2644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=1.818;SOR=0.942 GT:AD:DP:GQ:PL 0/1:108,106:214:99:2673,0,2707 17 2203025 rs1885987 T G 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.507;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.573;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.734;SOR=0.89 GT:AD:DP:GQ:PL 0/1:98,83:181:99:2150,0,2446 17 2203167 rs216195 T G 3175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.856;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=5.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.2;ReadPosRankSum=-1.482;SOR=1.065 GT:AD:DP:GQ:PL 0/1:86,110:196:99:3204,0,3244 17 2203175 rs1885986 C G 2290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=5.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.42;SOR=0.443 GT:AD:DP:GQ:PL 0/1:110,90:200:99:2319,0,4304 17 2203348 rs216194 T C 9737.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9766,948,0 17 2203453 rs216193 A G 8169.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.82;ReadPosRankSum=1.584;SOR=0.292 GT:AD:DP:GQ:PL 1/1:1,273:274:99:8198,780,0 17 2265113 rs2429906 C A 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.715;SOR=0.992 GT:AD:DP:GQ:PL 0/1:56,54:110:99:1463,0,1548 17 2266799 rs745400 G A 8234.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8263,882,0 17 2266812 rs2003968 T C 8448.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8477,887,0 17 2268311 rs2248821 G A 6545.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6574,656,0 17 2275734 rs3213712 C G 3108.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=2.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=1.369;SOR=0.85 GT:AD:DP:GQ:PL 0/1:154,134:288:99:3137,0,3783 17 2585113 rs6628 C T 2381.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.35;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2410,252,0 17 2595276 rs371974984 CCGCCA C 4472.73 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.14;QD=47.58;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,94:94:99:1|1:2595248_CCGCCA_C:4510,307,0 17 2595291 rs62068251 C T 4601.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.07;QD=43.83;SOR=1.947 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,105:105:99:1|1:2595248_CCGCCA_C:4630,319,0 17 2606715 rs1065479 G A 5468.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5497,549,0 17 2868935 rs12950923 T C 2608.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2637,271,0 17 2883588 rs17762452 C A 1826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-1.124;SOR=0.987 GT:AD:DP:GQ:PL 0/1:65,76:141:99:1855,0,1455 17 2884545 rs7208690 A G 1150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.084;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.707;SOR=0.634 GT:AD:DP:GQ:PL 0/1:57,47:104:99:1179,0,1395 17 2923767 rs2304982 A G 2421.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.31 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2450,240,0 17 2929286 rs4072679 A C 2031.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2060,213,0 17 2929392 rs55904912 G A 3261.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.64;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3290,353,0 17 2929674 rs12941934 T C 4749.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.294 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4778,458,0 17 2930223 rs4790114 T C 5699.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5728,567,0 17 2930339 rs4790115 G A 6373.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6402,655,0 17 2966032 rs202049082 C G 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=6.637;MLEAC=1;MLEAF=0.5;MQ=40.88;MQRankSum=-0.27;QD=13.88;ReadPosRankSum=0.458;SOR=0.237 GT:AD:DP:GQ:PL 0/1:37,38:75:99:1069,0,1076 17 3100802 rs2241094 C A 2915.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2944,282,0 17 3101076 rs2241092 G C 7007.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.21;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,211:211:99:7036,633,0 17 3119008 rs4325604 T C 4023.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4052,414,0 17 3119767 rs769427 C T 4848.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4877,506,0 17 3195503 rs703903 C T 10640.8 PASS AC=2;AF=1;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.847 GT:AD:DP:GQ:PL 1/1:0,360:360:99:10669,1077,0 17 3300934 rs769422 A T 2730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.778;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=8.599;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0.9;QD=10.34;ReadPosRankSum=2.078;SOR=1.103 GT:AD:DP:GQ:PL 0/1:147,117:264:99:2759,0,3555 17 3301549 rs150988 G A 3061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.016;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.5;MQ=54.56;MQRankSum=0.215;QD=12.4;ReadPosRankSum=0.698;SOR=0.734 GT:AD:DP:GQ:PL 0/1:118,129:247:99:3090,0,3162 17 3324004 rs146946227 C T 1794.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.04;QD=39.02;SOR=4.317 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1823,138,0 17 3324086 rs227788 G A 1050.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.54;QD=33.9;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1079,93,0 17 3324810 rs227787 A G 4599.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4628,450,0 17 3337057 rs769431 A G 2998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.59;MLEAC=1;MLEAF=0.5;MQ=49.76;MQRankSum=-0.358;QD=12.82;ReadPosRankSum=-1.019;SOR=0.834 GT:AD:DP:GQ:PL 0/1:116,118:234:99:3027,0,2740 17 3422032 rs7216486 G A 1968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.4;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.732;SOR=0.562 GT:AD:DP:GQ:PL 0/1:102,86:188:99:1997,0,2585 17 3445901 rs11078458 T G 7738.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.905;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.31;ReadPosRankSum=-0.84;SOR=0.91 GT:AD:DP:GQ:PL 1/1:2,262:264:99:7767,743,0 17 3447914 rs1039519 C T 4952.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4981,513,0 17 3458072 rs322965 T C 3690.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=29.06;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3719,381,0 17 3475405 rs224549 C T 6007.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.3;SOR=1.248 GT:AD:DP:GQ:PL 1/1:0,186:186:99:6036,558,0 17 3480447 rs8065080 T C 1616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.035;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.689;SOR=0.582 GT:AD:DP:GQ:PL 0/1:80,67:147:99:1645,0,1805 17 3493200 rs222747 C G 8086.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8115,795,0 17 3493533 rs161387 A G 6633.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.67;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6662,591,0 17 3514028 rs224496 G C 6645.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.58;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6674,612,0 17 3561396 rs161400 C T 6530.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6559,666,0 17 3563963 rs2873624 C G 3802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.664;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=0.847;SOR=0.631 GT:AD:DP:GQ:PL 0/1:122,150:272:99:3831,0,2882 17 3568012 rs8278 A G 6150.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6179,597,0 17 3594276 rs3215407 TG T 2870.73 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2908,268,0 17 3627473 rs9907144 C T 3290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.395;SOR=0.724 GT:AD:DP:GQ:PL 0/1:149,132:281:99:3319,0,4158 17 3627840 rs220462 G A 2467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.489;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-0.034;SOR=0.822 GT:AD:DP:GQ:PL 0/1:148,106:254:99:2496,0,4037 17 3628212 rs220461 T C 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.814;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.716;SOR=0.782 GT:AD:DP:GQ:PL 0/1:88,98:186:99:2522,0,1968 17 3628362 rs3809806 T C 2153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.226;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.172;SOR=0.819 GT:AD:DP:GQ:PL 0/1:109,87:196:99:2182,0,2644 17 3632836 rs1716 G A 717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.036;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=-1.204;SOR=1.329 GT:AD:DP:GQ:PL 0/1:28,30:58:99:746,0,680 17 3635645 rs170209 A G 870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=1.407;SOR=0.667 GT:AD:DP:GQ:PL 0/1:41,38:79:99:899,0,974 17 3649214 rs1183610 G A 4022.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=1.155 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4051,429,0 17 3657159 rs2272606 C T 9547.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44;SOR=0.74 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,217:217:99:1|1:3657159_C_T:9576,659,0 17 3657175 rs220479 T C 9328.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.99;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,217:217:99:1|1:3657159_C_T:9357,653,0 17 3664477 rs10687117 A AATT 2348.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.53;ReadPosRankSum=0.907;SOR=0.796 GT:AD:DP:GQ:PL 0/1:72,62:134:99:2386,0,3130 17 3729502 rs117759016 T A 1948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=0.495;SOR=0.425 GT:AD:DP:GQ:PL 0/1:55,79:134:99:1977,0,1286 17 3775848 rs7214723 T C 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.16;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.53;SOR=0.579 GT:AD:DP:GQ:PL 0/1:47,46:93:99:1097,0,1149 17 3775916 rs7214864 T C 3124.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3153,312,0 17 3785582 rs147284330 T C 1189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=-0.985;SOR=0.984 GT:AD:DP:GQ:PL 0/1:65,54:119:99:1218,0,1468 17 3787726 rs3809803 G A 1428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=1.927;SOR=1.106 GT:AD:DP:GQ:PL 0/1:55,60:115:99:1457,0,1295 17 3808497 rs12449598 A G 3845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.442;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.23;ReadPosRankSum=-0.385;SOR=0.92 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,99:200:99:0|1:3808497_A_G:3874,0,5095 17 3808498 rs68085968 A C 3845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.241;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.13;ReadPosRankSum=-0.571;SOR=0.891 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,100:201:99:0|1:3808497_A_G:3874,0,5095 17 3828702 rs887387 T C 2112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.275;SOR=0.796 GT:AD:DP:GQ:PL 0/1:78,89:167:99:2141,0,1947 17 3833740 rs10153291 G A 2209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=-0.348;SOR=0.889 GT:AD:DP:GQ:PL 0/1:158,107:265:99:2238,0,3935 17 3839685 rs1062683 G A 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-1.689;SOR=0.744 GT:AD:DP:GQ:PL 0/1:116,103:219:99:2373,0,2763 17 3840694 rs34866939 GA G 2709.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.141;QD=16.32;ReadPosRankSum=-0.137;SOR=0.832 GT:AD:DP:GQ:PGT:PID:PL 0/1:93,73:166:99:0|1:3840686_A_C:2747,0,3631 17 3840928 rs3179783 A G 2016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-2.013;SOR=0.657 GT:AD:DP:GQ:PL 0/1:86,84:170:99:2045,0,2276 17 3844345 rs9895012 G A 3650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.761;SOR=0.686 GT:AD:DP:GQ:PL 0/1:192,157:349:99:3679,0,4894 17 3845927 rs17846889 A G 4339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.144;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=0.303;SOR=0.555 GT:AD:DP:GQ:PL 0/1:132,182:314:99:4368,0,2751 17 3846675 rs71366582 C T 2314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-0.857;QD=9.53;ReadPosRankSum=-1.249;SOR=0.851 GT:AD:DP:GQ:PL 0/1:139,104:243:99:2343,0,3448 17 3846802 rs758641 A G 3422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.98;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.884;QD=13.27;ReadPosRankSum=0.073;SOR=0.715 GT:AD:DP:GQ:PL 0/1:112,146:258:99:3451,0,2561 17 3848013 rs1800911 A C 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.221;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=1.234;SOR=0.573 GT:AD:DP:GQ:PL 0/1:91,87:178:99:2078,0,2057 17 3853980 rs118171108 G C 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=10.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=-0.617;SOR=1.084 GT:AD:DP:GQ:PL 0/1:119,82:201:99:1827,0,2977 17 3947644 rs781831 T C 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.116;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=1.173;SOR=0.741 GT:AD:DP:GQ:PL 0/1:59,56:115:99:1433,0,1454 17 3953083 rs781853 T C 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=-2.488;SOR=0.492 GT:AD:DP:GQ:PL 0/1:115,86:201:99:1748,0,2667 17 3953102 rs781852 A G 1516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=0.393;SOR=0.489 GT:AD:DP:GQ:PL 0/1:110,75:185:99:1545,0,2618 17 3962450 rs9900661 A G 838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=3.81;SOR=0.584 GT:AD:DP:GQ:PL 0/1:34,34:68:99:867,0,795 17 3966064 rs781825 A G 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=5.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.558;SOR=0.382 GT:AD:DP:GQ:PL 0/1:67,76:143:99:1874,0,1673 17 3979949 rs7207986 G A 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.24;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=0.878;SOR=0.765 GT:AD:DP:GQ:PL 0/1:96,91:187:99:2183,0,2370 17 3989968 rs2727060 C T 1295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.482;SOR=0.55 GT:AD:DP:GQ:PL 0/1:49,53:102:99:1324,0,1341 17 3999199 rs12947597 C T 2092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-0.114;SOR=0.688 GT:AD:DP:GQ:PL 0/1:71,91:162:99:2121,0,1536 17 4015997 rs58625333 A G 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=0.603;SOR=0.645 GT:AD:DP:GQ:PL 0/1:87,76:163:99:1711,0,2129 17 4016096 rs74887186 T C 828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.076;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-0.726;SOR=0.933 GT:AD:DP:GQ:PL 0/1:48,36:84:99:857,0,1253 17 4020432 rs117738178 C T 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.392;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=4.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-0.755;SOR=1.065 GT:AD:DP:GQ:PL 0/1:80,81:161:99:1976,0,1891 17 4046101 rs1454121 A G 9080.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.66;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,262:262:99:9109,786,0 17 4058168 rs71936267 CCTT C 3776.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.264;QD=21.83;ReadPosRankSum=0.78;SOR=0.696 GT:AD:DP:GQ:PL 0/1:76,97:173:99:3814,0,3211 17 4060383 rs76481447 G A 5810.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.414 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5839,590,0 17 4088291 rs2020118 C T 6343.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6372,618,0 17 4349508 rs56005249 G A 1389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.85;ReadPosRankSum=0.168;SOR=0.994 GT:AD:DP:GQ:PL 0/1:96,61:157:99:1418,0,2473 17 4350182 rs2047233 T C 4739.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4768,480,0 17 4351560 rs12450838 G A 2056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=1.363;SOR=0.638 GT:AD:DP:GQ:PL 0/1:78,84:162:99:2085,0,2121 17 4352539 rs7224464 C T 2222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.028;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=7.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.389;SOR=1.153 GT:AD:DP:GQ:PL 0/1:118,96:214:99:2251,0,2909 17 4352636 rs34457931 G A 2813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.811;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.525;SOR=0.651 GT:AD:DP:GQ:PL 0/1:132,115:247:99:2842,0,3175 17 4356375 rs11655342 G T 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.24;ReadPosRankSum=-1.781;SOR=0.567 GT:AD:DP:GQ:PL 0/1:123,92:215:99:2014,0,3018 17 4391132 rs2291743 C T 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.248;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.196;SOR=0.777 GT:AD:DP:GQ:PL 0/1:85,80:165:99:1672,0,2126 17 4391153 rs333122 A G 1801.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.663;SOR=0.796 GT:AD:DP:GQ:PL 0/1:86,80:166:99:1830,0,2012 17 4391201 rs2291742 A G 1533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.418;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=0.565;SOR=0.5 GT:AD:DP:GQ:PL 0/1:79,68:147:99:1562,0,1794 17 4439727 rs146210718 T TG 1616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-1.255;QD=8.69;ReadPosRankSum=-2.211;SOR=0.657 GT:AD:DP:GQ:PL 0/1:106,80:190:99:1645,0,2703 17 4439731 rs148088156 G GA 2566.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.463;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.377;QD=12.64;ReadPosRankSum=3.609;SOR=0.623 GT:AD:DP:GQ:PL 0/1:98,105:203:99:2604,0,2347 17 4455500 rs7206974 T C 6748.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6777,675,0 17 4463023 rs11657054 G A 4471.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4500,443,0 17 4463699 rs7216284 G A 4722.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4751,453,0 17 4463796 rs7216474 G A 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.063;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.032;SOR=0.853 GT:AD:DP:GQ:PL 0/1:80,73:153:99:1862,0,1893 17 4495740 rs12449695 G A 802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.438;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-1.226;SOR=0.715 GT:AD:DP:GQ:PL 0/1:59,35:94:99:831,0,1503 17 4497160 rs8080130 T C 5354.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5383,546,0 17 4541560 rs3887815 G A 228.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.979;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=18.337;MLEAC=1;MLEAF=0.5;MQ=32.99;MQRankSum=0.895;QD=9.53;ReadPosRankSum=1.413;SOR=0.377 GT:AD:DP:GQ:PL 0/1:15,9:24:99:257,0,466 17 4541604 rs3892408 C T 86.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=12.942;MLEAC=1;MLEAF=0.5;MQ=34.33;MQRankSum=-2.774;QD=3.47;ReadPosRankSum=0.182;SOR=3.909 GT:AD:DP:GQ:PL 0/1:19,6:25:99:115,0,656 17 4541995 rs34766541 G A 1358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.46;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-1.316;SOR=0.911 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1387,0,1490 17 4542717 rs11078528 G A 1899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=1.258;QD=9.89;ReadPosRankSum=-1.014;SOR=0.996 GT:AD:DP:GQ:PL 0/1:108,84:192:99:1928,0,2753 17 4575283 rs3862485 A G 6785.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6814,643,0 17 4579638 rs8071990 G A 2349.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.19;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2378,219,0 17 4586253 rs34352526 GA G 3558.73 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.17;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3596,393,0 17 4620497 rs7208257 C T 3282.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=1.487 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3311,335,0 17 4622638 rs1045280 C T 7056.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7085,695,0 17 4638484 rs1876444 T C 2626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-2.237;SOR=0.687 GT:AD:DP:GQ:PL 0/1:119,110:229:99:2655,0,2944 17 4638563 rs2277680 G A 3082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.671;SOR=0.629 GT:AD:DP:GQ:PL 0/1:116,134:250:99:3111,0,2883 17 4638737 rs1050998 A G 2469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.881;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=1.249;SOR=0.877 GT:AD:DP:GQ:PL 0/1:73,100:173:99:2498,0,1503 17 4641755 rs1050997 C T 2398.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2427,240,0 17 4642069 rs2250333 A G 4106.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.22;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,120:120:99:4135,360,0 17 4642222 rs2304973 G A 1787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.442;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.164;SOR=0.698 GT:AD:DP:GQ:PL 0/1:87,72:159:99:1816,0,2177 17 4686340 rs3853643 T G 11467.8 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.62;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,257:257:99:1|1:4686340_T_G:11496,776,0 17 4686341 rs3853644 T G 11467.8 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.62;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,257:257:99:1|1:4686340_T_G:11496,776,0 17 4693054 rs12951761 G A 2351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.514;SOR=0.797 GT:AD:DP:GQ:PL 0/1:129,95:224:99:2380,0,3513 17 4693170 rs34850425 T C 7775.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7804,755,0 17 4693342 rs35910358 C A 5637.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.855;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.47;ReadPosRankSum=-0.61;SOR=0.223 GT:AD:DP:GQ:PL 1/1:1,184:185:99:5666,543,0 17 4693508 rs34421346 G C 6686.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6715,645,0 17 4701402 rs7468 C T 2087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.842;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.256;SOR=0.742 GT:AD:DP:GQ:PL 0/1:80,82:162:99:2116,0,2323 17 4712395 rs1132446 A T 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.371;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.019;SOR=0.586 GT:AD:DP:GQ:PL 0/1:39,50:89:99:1116,0,804 17 4718776 rs1132448 G A 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.757;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=0.67;SOR=0.45 GT:AD:DP:GQ:PL 0/1:39,25:64:99:566,0,1188 17 4720469 rs1052748 C T 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.239;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=6.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=2.576;SOR=0.801 GT:AD:DP:GQ:PL 0/1:56,46:102:99:1018,0,1713 17 4722133 rs3764900 C T 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.131;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.17;ReadPosRankSum=-1.473;SOR=0.666 GT:AD:DP:GQ:PL 0/1:78,47:125:99:924,0,1797 17 4725920 rs2875840 T C 987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.433;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.109;QD=13;ReadPosRankSum=-0.503;SOR=0.585 GT:AD:DP:GQ:PL 0/1:41,35:76:99:1016,0,1156 17 4837171 . GGAGCCCACCTCAGAGCCCGCCCCCAGCCCGACCACCCCA G 3886.73 PASS AC=2;AF=1;AN=2;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.59;QD=34.7;SOR=8.051 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3924,346,0 17 4845768 rs238247 G A 5028.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5057,501,0 17 4856376 rs238238 A G 5216.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5245,506,0 17 4856580 rs238239 T C 5382.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.76;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5411,524,0 17 4863410 rs238224 A G 2573.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2602,222,0 17 4863626 rs138742777 G A 994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=5.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=1.206;SOR=0.694 GT:AD:DP:GQ:PL 0/1:47,42:89:99:1023,0,1261 17 4875566 rs238230 T C 5828.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5857,591,0 17 4883818 rs238234 C G 4208.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=2.352 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4237,433,0 17 4886037 rs238232 A G 3803.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3832,353,0 17 4906146 rs72354902 GC G 117.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.51;ReadPosRankSum=-1.414;SOR=0.56 GT:AD:DP:GQ:PL 0/1:64,14:78:99:155,0,1486 17 4926882 rs346828 A G 6860.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6889,679,0 17 4936972 rs346821 G A 9256.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,317:317:99:9285,950,0 17 4937575 rs346822 T C 6355.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6384,642,0 17 5036849 rs3867174 T C 5190.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.82;QD=30.9;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5219,503,0 17 5058808 rs9899177 G A 9010.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=28.97;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,311:311:99:9039,931,0 17 5066305 rs2307138 A T 7760.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.64;QD=29.29;SOR=1.05 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7789,794,0 17 5072316 rs11658877 C T 8440.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.01;QD=29.93;SOR=1.111 GT:AD:DP:GQ:PL 1/1:0,282:282:99:8469,845,0 17 5085893 rs4115657 C T 5947.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=32.68;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5976,546,0 17 5087040 rs9908414 A G 5072.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.59;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,151:151:99:5101,453,0 17 5126674 rs2641256 A G 4608.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.28;SOR=0.912 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,109:109:99:1|1:5126674_A_G:4637,327,0 17 5126689 rs2585271 G A 4352.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.97;SOR=1.037 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,99:99:99:1|1:5126674_A_G:4381,301,0 17 5424886 rs2301583 G T 1929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.517;SOR=0.718 GT:AD:DP:GQ:PL 0/1:84,83:167:99:1958,0,1991 17 5425077 rs11651270 T C 3948.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.63;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3977,362,0 17 5436263 rs2301582 C T 3322.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3351,329,0 17 5485367 rs12150220 A T 3986.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.301 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4015,404,0 17 5991344 rs2302836 C T 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-0.545;SOR=0.614 GT:AD:DP:GQ:PL 0/1:58,66:124:99:1502,0,1288 17 6014176 rs2302837 A G 7214.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7243,746,0 17 6330068 rs2292546 T C 4924.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.2;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4953,432,0 17 6331803 rs8075035 T C 5768.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=1.364 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5797,546,0 17 6331836 rs12453262 T G 1619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.079;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.86;ReadPosRankSum=-0.795;SOR=0.692 GT:AD:DP:GQ:PL 0/1:51,58:109:99:1648,0,1299 17 6337247 rs12449580 C G 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.028;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=1.181;SOR=0.803 GT:AD:DP:GQ:PL 0/1:125,101:226:99:2711,0,3083 17 6353679 rs7218283 A C 2934.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2963,285,0 17 6364753 rs11654099 A G 3406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.988;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.289;SOR=0.727 GT:AD:DP:GQ:PL 0/1:155,149:304:99:3435,0,3487 17 6373737 rs11654175 C T 2224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.617;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=1.098;SOR=0.896 GT:AD:DP:GQ:PL 0/1:112,100:212:99:2253,0,2580 17 6381939 rs938288 G A 8126.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8155,849,0 17 6493198 rs1443417 T C 4425.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4454,449,0 17 6511781 rs4796519 A G 1381.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=2.059 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1410,135,0 17 6513329 rs2304977 G A 5318.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5347,537,0 17 6515387 rs2289642 A G 4756.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4785,489,0 17 6515454 rs2289643 C T 2849.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.744 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2878,270,0 17 6524298 rs9889363 T A 3139.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=1.38 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3168,321,0 17 6531648 rs2072149 A G 4471.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4500,453,0 17 6555546 rs56268735 C CG 5791.73 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=35.32;SOR=1.158 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5829,493,0 17 6596497 . AAC A 123.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0;ClippingRankSum=-0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=12.37;ReadPosRankSum=-0.163;SOR=0.859 GT:AD:DP:GQ:PL 0/1:4,6:12:62:161,0,62 17 6663895 rs2271231 C G 2957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-1.335;SOR=0.622 GT:AD:DP:GQ:PL 0/1:126,119:245:99:2986,0,3364 17 6683215 rs4796555 C T 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.824;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=4.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.138;SOR=0.431 GT:AD:DP:GQ:PL 0/1:82,95:177:99:2128,0,2065 17 6684003 rs17731806 C G 4153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.89;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.59;SOR=0.66 GT:AD:DP:GQ:PL 0/1:147,174:321:99:4182,0,3640 17 6690161 rs17853331 C T 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=-2.925;SOR=0.691 GT:AD:DP:GQ:PL 0/1:69,50:119:99:1103,0,1808 17 6704273 rs2136282 G A 1901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=0.231;SOR=0.406 GT:AD:DP:GQ:PL 0/1:60,72:132:99:1930,0,1559 17 6716242 rs3744395 G A 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=2.52;SOR=0.86 GT:AD:DP:GQ:PL 0/1:121,100:221:99:2158,0,2801 17 6716385 rs8081510 T C 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.549;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=1.851;SOR=0.743 GT:AD:DP:GQ:PL 0/1:50,46:96:99:1169,0,1195 17 6733672 rs8078571 T C 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=1.54;SOR=0.658 GT:AD:DP:GQ:PL 0/1:65,73:138:99:1686,0,1480 17 6899559 rs312467 C G 9379.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,307:307:99:9408,921,0 17 6900362 rs2070589 C T 3607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.925;SOR=0.631 GT:AD:DP:GQ:PL 0/1:175,151:326:99:3636,0,4410 17 6902743 rs1042356 G A 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=1.702;SOR=0.564 GT:AD:DP:GQ:PL 0/1:85,89:174:99:2153,0,2154 17 6902760 rs1126667 A G 1992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.743;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.196;SOR=0.638 GT:AD:DP:GQ:PL 0/1:73,82:155:99:2021,0,1953 17 6904934 rs434473 A G 1963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.848;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=0.08;SOR=0.597 GT:AD:DP:GQ:PL 0/1:68,72:140:99:1992,0,1623 17 6905061 rs1042357 T G 2258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.79;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=1.297;SOR=0.684 GT:AD:DP:GQ:PL 0/1:83,90:173:99:2287,0,2011 17 6919093 rs14309 T C 3536.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3565,350,0 17 6928019 rs146207245 C CCAG 10379.7 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.598;QD=36.17;ReadPosRankSum=0.28;SOR=0.703 GT:AD:DP:GQ:PL 0/1:23,264:289:99:10417,0,151 17 6929924 rs379478 T C 8739.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.01;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8768,820,0 17 6942108 rs11078663 C T 2813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.156;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.13;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=0.606;SOR=0.509 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,109:206:99:0|1:6942108_C_T:2842,0,3710 17 6942111 rs33979567 G T 2249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.929;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-1.18;SOR=0.919 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,97:204:99:1|0:6942108_C_T:2278,0,4226 17 6943266 rs4796576 G A 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.789;SOR=1.046 GT:AD:DP:GQ:PL 0/1:87,88:175:99:2258,0,2320 17 6946357 rs75636181 C A 3016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-1.596;SOR=0.728 GT:AD:DP:GQ:PL 0/1:187,136:323:99:3045,0,4601 17 7011144 rs62058755 G A 1765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.78;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=62.21;MQRankSum=-6.446;QD=11.85;ReadPosRankSum=1.243;SOR=0.665 GT:AD:DP:GQ:PL 0/1:72,77:149:99:1794,0,2706 17 7012073 rs2304980 G T 5518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.291;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.96;ReadPosRankSum=1.726;SOR=0.797 GT:AD:DP:GQ:PGT:PID:PL 0/1:148,143:291:99:0|1:7012073_G_T:5547,0,12600 17 7012077 rs2304979 C T 5545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.99;ReadPosRankSum=1.979;SOR=0.758 GT:AD:DP:GQ:PGT:PID:PL 0/1:151,141:292:99:0|1:7012073_G_T:5574,0,12860 17 7012079 rs2304978 C T 5501.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.46;ReadPosRankSum=2.069;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,144:298:99:0|1:7012073_G_T:5530,0,12866 17 7080316 rs55714927 C T 1425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.814;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-1.902;SOR=0.941 GT:AD:DP:GQ:PL 0/1:69,66:135:99:1454,0,1990 17 7099811 rs17203281 G A 1853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.18;SOR=0.71 GT:AD:DP:GQ:PL 0/1:68,79:147:99:1882,0,1551 17 7121105 rs72839706 C A 1254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.76;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=0.98;SOR=0.693 GT:AD:DP:GQ:PL 0/1:78,58:136:99:1283,0,2041 17 7127718 rs17671352 T C 6610.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6639,654,0 17 7129840 rs35594616 T C 6846.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6875,670,0 17 7129898 rs72839768 G A 2323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.82;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.431;SOR=0.762 GT:AD:DP:GQ:PL 0/1:104,95:199:99:2352,0,2601 17 7129974 rs2074222 A G 2894.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.53;SOR=2.276 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2923,267,0 17 7132556 rs222837 C T 6217.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6246,607,0 17 7133162 rs222836 G A 3334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.33;SOR=0.891 GT:AD:DP:GQ:PL 0/1:149,142:291:99:3363,0,3685 17 7133609 rs2074216 G A 3582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.397;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=10.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.687;SOR=0.95 GT:AD:DP:GQ:PL 0/1:131,139:270:99:3611,0,3692 17 7134129 rs222835 A G 3446.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=1.262 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3475,336,0 17 7154534 rs414206 G A 2571.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2600,257,0 17 7163739 rs4562 A G 5129.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.66;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:5158,444,0 17 7187123 rs5435 T C 5570.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5599,543,0 17 7192091 rs222842 C T 5179.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.41;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5208,565,0 17 7193055 rs3833134 GA G 11819.7 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=45.64;SOR=0.85 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,259:259:99:1|1:7193055_GA_G:11857,804,0 17 7193060 rs55781423 A G 11877.8 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.65;SOR=0.854 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,266:266:99:1|1:7193055_GA_G:11906,810,0 17 7197633 rs8069533 A G 3124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.673;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=2.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.626;SOR=0.533 GT:AD:DP:GQ:PL 0/1:148,120:268:99:3153,0,3849 17 7197794 rs222859 C A 8178.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.25;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=2.245;MLEAC=2;MLEAF=1;MQ=59.91;MQRankSum=-0.125;QD=29.21;ReadPosRankSum=0.552;SOR=0.608 GT:AD:DP:GQ:PL 1/1:3,277:280:99:8207,806,0 17 7217463 rs2292064 T C 2575.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=35.28;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2604,219,0 17 7217497 rs3215130 AG A 975.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=0.969;QD=16.26;ReadPosRankSum=-0.4;SOR=0.863 GT:AD:DP:GQ:PL 0/1:28,32:60:99:1013,0,859 17 7220697 rs62059198 G T 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=5.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-0.084;SOR=0.751 GT:AD:DP:GQ:PL 0/1:67,73:140:99:1952,0,1770 17 7221167 rs199679768 C T 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.99;ReadPosRankSum=-1.006;SOR=0.779 GT:AD:DP:GQ:PL 0/1:148,71:219:99:1341,0,3474 17 7221197 rs118077107 C T 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.761;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=6.299;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.87;ReadPosRankSum=-0.837;SOR=0.662 GT:AD:DP:GQ:PL 0/1:125,71:196:99:1571,0,2984 17 7221385 rs1127440 G A 3344.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3373,318,0 17 7226957 rs35776863 G A 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=4.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.889;SOR=0.903 GT:AD:DP:GQ:PL 0/1:61,71:132:99:1711,0,1478 17 7232566 . A C 278.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.404;ClippingRankSum=0;DP=148;ExcessHet=3.0103;FS=211.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.95;ReadPosRankSum=-5.629;SOR=6.592 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,26:143:99:0|1:7232566_A_C:307,0,6434 17 7232572 . G C 206.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.186;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=170.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.48;ReadPosRankSum=-6.179;SOR=6.182 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,21:140:99:0|1:7232566_A_C:235,0,6439 17 7232576 . G C 180.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.119;ClippingRankSum=0;DP=143;ExcessHet=3.0103;FS=161.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.31;ReadPosRankSum=-6.66;SOR=5.991 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,19:138:99:0|1:7232566_A_C:209,0,6461 17 7232577 . G C 164.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.889;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=147.133;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.22;ReadPosRankSum=-6.715;SOR=5.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,17:135:99:0|1:7232566_A_C:193,0,6464 17 7245371 rs4796407 A G 3012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.086;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=1.375;SOR=0.672 GT:AD:DP:GQ:PL 0/1:142,128:270:99:3041,0,3297 17 7246851 rs3809828 C T 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=5.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.447;SOR=1.026 GT:AD:DP:GQ:PL 0/1:137,120:257:99:2859,0,3539 17 7251605 rs2292066 G C 5880.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5909,543,0 17 7254602 rs66687178 T G 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.042;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-1.228;SOR=0.564 GT:AD:DP:GQ:PL 0/1:41,40:81:99:1005,0,1034 17 7286326 rs1554948 T A 2916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.632;SOR=0.669 GT:AD:DP:GQ:PL 0/1:131,134:267:99:2945,0,3042 17 7287832 rs61730812 C A 3233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.667;SOR=0.66 GT:AD:DP:GQ:PL 0/1:149,140:289:99:3262,0,3709 17 7290787 rs5819155 TG T 1350.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.63;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=-0.824;SOR=0.706 GT:AD:DP:GQ:PL 0/1:54,45:99:99:1388,0,1720 17 7292107 rs6503018 G A 5625.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=1.405 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5654,530,0 17 7293715 rs3744549 C T 3051.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3080,311,0 17 7315480 . G A 849.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=1.067;SOR=0.504 GT:AD:DP:GQ:PL 0/1:36,36:72:99:878,0,895 17 7317647 rs60631713 A AC 2778.73 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=1.45 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2816,259,0 17 7318061 rs78355381 T C 3403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.487;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-0.108;SOR=0.72 GT:AD:DP:GQ:PL 0/1:107,146:253:99:3432,0,2194 17 7318396 rs2241233 C T 5316.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5345,534,0 17 7318935 rs12947017 C T 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.378;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=4.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-1.202;SOR=1.022 GT:AD:DP:GQ:PL 0/1:110,88:198:99:2062,0,2524 17 7320870 rs201523501 G A 2631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.123;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.68;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=4.314;SOR=0.57 GT:AD:DP:GQ:PL 0/1:114,103:217:99:2660,0,2959 17 7321067 rs62061175 C T 481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=3.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.672;SOR=1.345 GT:AD:DP:GQ:PL 0/1:25,23:48:99:510,0,735 17 7329134 rs72842820 G A 2608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.146;SOR=0.6 GT:AD:DP:GQ:PL 0/1:95,109:207:99:2637,0,2407 17 7329632 rs13290 T G 4224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-1.984;SOR=0.678 GT:AD:DP:GQ:PL 0/1:147,166:313:99:4253,0,3758 17 7366619 rs34914463 T C 3987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.023;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=5.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-0.355;SOR=0.972 GT:AD:DP:GQ:PL 0/1:187,145:332:99:4016,0,4579 17 7386055 rs4491591 C T 24669.8 PASS AC=2;AF=1;AN=2;DB;DP=819;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.5;QD=30.16;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,818:818:99:24698,2452,0 17 7386217 rs200349946 T C 2155.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.396;ClippingRankSum=0;DB;DP=807;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.5;MQ=57.52;MQRankSum=-26.877;QD=2.67;ReadPosRankSum=6.316;SOR=0.625 GT:AD:DP:GQ:PGT:PID:PL 0/1:701,106:807:99:0|1:7386217_T_C:2184,0,29232 17 7386234 rs200251320 G A 2149.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.764;ClippingRankSum=0;DB;DP=797;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.63;MQRankSum=-26.738;QD=2.7;ReadPosRankSum=0.725;SOR=0.629 GT:AD:DP:GQ:PGT:PID:PL 0/1:696,101:797:99:0|1:7386217_T_C:2178,0,28921 17 7386279 rs7219992 T C 12646.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.893;ClippingRankSum=0;DB;DP=662;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=58.75;MQRankSum=5.718;QD=19.13;ReadPosRankSum=3.232;SOR=0.598 GT:AD:DP:GQ:PGT:PID:PL 0/1:333,328:661:99:0|1:7386279_T_C:12675,0,13927 17 7386280 rs7214088 G A 12643.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DB;DP=663;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=58.74;MQRankSum=5.487;QD=19.1;ReadPosRankSum=3.702;SOR=0.608 GT:AD:DP:GQ:PGT:PID:PL 0/1:336,326:662:99:0|1:7386279_T_C:12672,0,13948 17 7399319 rs41556717 C T 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.04;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.051;SOR=0.648 GT:AD:DP:GQ:PL 0/1:98,88:186:99:1972,0,2399 17 7399866 rs2301609 G A 1858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=2.719;SOR=0.618 GT:AD:DP:GQ:PL 0/1:56,79:135:99:1887,0,1326 17 7400137 rs9898024 T C 4028.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4057,402,0 17 7402600 rs2228129 T C 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.019;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=4.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=0.377;SOR=0.877 GT:AD:DP:GQ:PL 0/1:54,62:116:99:1672,0,1363 17 7403942 rs12936464 A C 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.591;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.2;ReadPosRankSum=0.819;SOR=0.452 GT:AD:DP:GQ:PL 0/1:19,24:43:99:682,0,434 17 7404107 rs7217707 T C 3459.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.27;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3488,312,0 17 7404991 rs2228130 T C 3574.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3603,335,0 17 7411770 rs2228132 C T 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.115;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=1.26;SOR=0.773 GT:AD:DP:GQ:PL 0/1:41,43:84:99:1158,0,1098 17 7412403 rs2228133 T C 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.951;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.798;SOR=0.718 GT:AD:DP:GQ:PL 0/1:88,81:169:99:2056,0,2020 17 7416599 rs55931722 G A 3745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.44;ClippingRankSum=0;DB;DP=371;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=0.464;SOR=0.757 GT:AD:DP:GQ:PL 0/1:180,188:368:99:3774,0,3985 17 7416683 rs9894023 A G 8442.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8471,812,0 17 7417086 rs4344809 G A 5103.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5132,504,0 17 7460517 rs3803798 G C 10255.8 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.15;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,319:319:99:10284,958,0 17 7460559 rs4968189 T G 10767.8 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.93;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,327:327:99:10796,981,0 17 7460685 rs1128963 G A 8110.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.05 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8139,795,0 17 7462969 rs3803800 A G 6244.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.87;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6273,570,0 17 7470285 rs58837213 CA C 2318.73 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.13;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2356,199,0 17 7477938 rs1057086 G C 6191.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6220,608,0 17 7530271 rs858520 C T 3202.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3231,315,0 17 7557419 rs1642763 A G 7507.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7536,722,0 17 7579472 rs1042522 G C 8554.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8583,870,0 17 7592168 rs2287499 C G 3510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.292;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-2.243;SOR=0.567 GT:AD:DP:GQ:PL 0/1:126,140:266:99:3539,0,2968 17 7606722 rs7640 C G 3125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=1.055;SOR=0.832 GT:AD:DP:GQ:PL 0/1:169,156:325:99:3154,0,4493 17 7630505 rs11867551 T C 2273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.757;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.099;SOR=0.646 GT:AD:DP:GQ:PL 0/1:107,98:205:99:2302,0,2501 17 7680159 rs62059684 G A 3843.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=28.68;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3872,402,0 17 7681412 rs7359662 C G 4791.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.32;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4820,459,0 17 7700712 rs1565817 C T 2142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.739;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-1.128;SOR=0.876 GT:AD:DP:GQ:PL 0/1:109,88:197:99:2171,0,2738 17 7705344 rs8073196 G C 2021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.061;SOR=0.889 GT:AD:DP:GQ:PL 0/1:105,89:194:99:2050,0,2638 17 7721030 rs872346 G A 4167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.319;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-0.642;SOR=0.758 GT:AD:DP:GQ:PL 0/1:174,190:364:99:4196,0,4505 17 7722365 rs7213894 C T 6626.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6655,641,0 17 7750177 rs61462443 T TACCACC 2464.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.306;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;MQRankSum=0.263;QD=44.01;ReadPosRankSum=1.41;SOR=6.77 GT:AD:DP:GQ:PL 1/1:1,55:59:99:2502,101,0 17 7754993 rs12939056 G A 2529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.917;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=-1.136;SOR=0.588 GT:AD:DP:GQ:PL 0/1:116,105:221:99:2558,0,3246 17 7788409 rs201772788 C G 4626.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.24;SOR=0.928 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,121:121:99:1|1:7788409_C_G:4655,369,0 17 7811998 rs4239111 T C 1334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=2.902;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=-0.181;SOR=0.407 GT:AD:DP:GQ:PL 0/1:37,56:93:99:1363,0,899 17 7942901 rs76589243 C G 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.026;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=7.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.88;ReadPosRankSum=-0.278;SOR=0.291 GT:AD:DP:GQ:PL 0/1:61,61:122:99:1722,0,1517 17 7946088 . T A 47.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=37.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.56;ReadPosRankSum=2.318;SOR=5.419 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,14:85:76:0|1:7946083_T_A:76,0,1512 17 7999957 rs3809881 G A 607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.318;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-0.87;SOR=1.155 GT:AD:DP:GQ:PL 0/1:42,23:65:99:636,0,1293 17 8046772 rs2585405 C G 6536.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6565,617,0 17 8048169 rs2253820 T C 5459.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5488,538,0 17 8048283 rs2735611 G A 3442.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3471,348,0 17 8053085 rs3027178 T G 2433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.783;SOR=0.64 GT:AD:DP:GQ:PL 0/1:97,102:199:99:2462,0,2336 17 8064779 rs75664430 C G 2167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.074;SOR=0.452 GT:AD:DP:GQ:PL 0/1:95,82:177:99:2196,0,2653 17 8076778 rs9894790 C T 2718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.08;ReadPosRankSum=-1.195;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:56,73:129:99:0|1:8076778_C_T:2747,0,2094 17 8076802 rs9901637 T A 2766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.65;ReadPosRankSum=0.997;SOR=0.573 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,75:134:99:0|1:8076778_C_T:2795,0,2131 17 8076911 rs11655582 A G 3497.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.18;SOR=1.264 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:8076911_A_G:3526,243,0 17 8076916 rs11650713 C T 1541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.403;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.41;ReadPosRankSum=1.674;SOR=0.723 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,40:72:99:0|1:8076911_A_G:1570,0,1245 17 8076917 rs56346215 A C 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.4;ReadPosRankSum=-1.622;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,33:74:99:0|1:8076911_A_G:1242,0,1591 17 8092694 rs8531 T G 12973.8 PASS AC=2;AF=1;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,414:414:99:13002,1239,0 17 8108331 rs1059476 A G 8757.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.19;SOR=1.266 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,242:242:99:1|1:8108331_A_G:8786,730,0 17 8108339 rs2241909 G A 2187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.704;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.135;SOR=0.621 GT:AD:DP:GQ:PGT:PID:PL 0/1:130,88:218:99:0|1:8108331_A_G:2216,0,3428 17 8132763 rs3826543 T C 2971.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3000,299,0 17 8135061 rs3027238 T C 4072.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.921 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4101,402,0 17 8139463 rs74506939 G A 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-1.218;SOR=0.804 GT:AD:DP:GQ:PL 0/1:86,68:154:99:1709,0,2202 17 8141707 rs6503093 T C 4444.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=1.153 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4473,401,0 17 8157310 rs9891699 C T 4050.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4079,393,0 17 8159232 rs7221716 A G 2863.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.27;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2892,314,0 17 8161149 rs4791641 C T 877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.822;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.61;ReadPosRankSum=-0.977;SOR=1.038 GT:AD:DP:GQ:PL 0/1:65,37:102:99:906,0,1711 17 8167600 rs11078738 T C 5254.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5283,540,0 17 8168224 rs9902252 T C 3394.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=1.365 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3423,327,0 17 8168805 rs9897842 A G 3781.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3810,356,0 17 8215534 rs3744651 C T 2416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=23.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=2.123;SOR=0.143 GT:AD:DP:GQ:PL 0/1:71,98:169:99:2445,0,1623 17 8216468 rs871841 T C 3799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.528;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.96;ReadPosRankSum=-1.144;SOR=0.661 GT:AD:DP:GQ:PL 0/1:113,141:254:99:3828,0,2544 17 8219478 rs2270445 A G 3149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.937;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=9.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.222;SOR=0.357 GT:AD:DP:GQ:PL 0/1:109,129:238:99:3178,0,2870 17 8224276 rs3744647 T C 7713.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7742,788,0 17 8243469 rs12943505 T C 4139.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4168,414,0 17 8243661 rs12601097 G A 3506.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3535,356,0 17 8243785 rs12936935 A G 3301.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3330,321,0 17 8296440 rs12601265 G A 7188.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7217,684,0 17 8387438 rs113838551 G GATGA 3730.73 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=44.95;SOR=1.32 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3768,253,0 17 8390733 rs3826463 A G 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.478;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0;QD=11.94;ReadPosRankSum=1.141;SOR=0.591 GT:AD:DP:GQ:PL 0/1:73,73:146:99:1771,0,1702 17 8416901 rs11374 C T 2399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.65;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.831;QD=10.57;ReadPosRankSum=-1.118;SOR=0.645 GT:AD:DP:GQ:PL 0/1:119,108:227:99:2428,0,2815 17 8417006 rs66631876 GT G 1321.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.582;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.723;QD=9.51;ReadPosRankSum=1.566;SOR=0.686 GT:AD:DP:GQ:PL 0/1:64,75:175:99:1359,0,1417 17 8424270 rs8067456 G A 4789.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4818,485,0 17 8451744 rs57472344 GA G 1006.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.985;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;MQRankSum=0.348;QD=21.42;ReadPosRankSum=-1.197;SOR=0.56 GT:AD:DP:GQ:PL 1/1:3,44:47:75:1044,75,0 17 8647931 rs10852904 G C 621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=1.295;SOR=0.617 GT:AD:DP:GQ:PL 0/1:36,27:63:99:650,0,992 17 8701799 rs17854013 G T 2554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=5.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=2.158;SOR=0.688 GT:AD:DP:GQ:PL 0/1:123,109:232:99:2583,0,3131 17 8725214 rs56322041 A AG 5741.73 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=35.23;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5779,490,0 17 8738575 rs1005898 A G 2541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.987;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=1.306;SOR=0.602 GT:AD:DP:GQ:PL 0/1:93,110:203:99:2570,0,2414 17 8785087 rs9903447 A C 1970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.377;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=5.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.29;ReadPosRankSum=-0.544;SOR=1.098 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,52:114:99:0|1:8785087_A_C:1999,0,3191 17 8785092 rs9902600 C T 1967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=4.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.96;ReadPosRankSum=0.148;SOR=1.056 GT:AD:DP:GQ:PGT:PID:PL 0/1:63,53:116:99:0|1:8785087_A_C:1996,0,3225 17 8792003 rs9915880 C T 2516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=1.655;SOR=0.677 GT:AD:DP:GQ:PL 0/1:102,98:200:99:2545,0,2513 17 8792029 rs381309 A G 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.263;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=4.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=2.742;SOR=0.745 GT:AD:DP:GQ:PL 0/1:94,97:191:99:2422,0,2207 17 8792093 rs16957702 G A 2051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.057;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.487;SOR=0.815 GT:AD:DP:GQ:PL 0/1:93,86:179:99:2080,0,2179 17 8792171 rs11650737 T C 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.554;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=6.98;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.745;SOR=1.23 GT:AD:DP:GQ:PL 0/1:97,67:164:99:1771,0,2190 17 8792514 rs394811 G A 1487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.879;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-1.88;SOR=0.871 GT:AD:DP:GQ:PL 0/1:61,70:131:99:1516,0,1543 17 9086228 rs2302196 C A 3033.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=1.374 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3062,310,0 17 9086293 rs2302197 G C 2561.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=1.504 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2590,261,0 17 9395231 rs9893664 G A 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=-0.414;SOR=0.74 GT:AD:DP:GQ:PL 0/1:63,45:108:99:1032,0,1609 17 9471711 rs1133295 T G 2637.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.933;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.212;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.97;ReadPosRankSum=-0.457;SOR=0.407 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2666,253,0 17 9479098 rs7224817 C A 5258.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5287,535,0 17 9515777 rs6503235 G A 6077.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.254 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6106,606,0 17 9676134 rs2280490 G A 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=-1.394;SOR=0.628 GT:AD:DP:GQ:PL 0/1:159,114:273:99:2501,0,3780 17 9676148 rs2280489 C T 2578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.735;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=-1.444;SOR=0.768 GT:AD:DP:GQ:PL 0/1:163,119:282:99:2607,0,3858 17 9764531 rs2001486 A G 649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.137;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=-0.054;SOR=0.356 GT:AD:DP:GQ:PL 0/1:40,31:71:99:678,0,923 17 9846521 rs17339499 G C 750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.99;ReadPosRankSum=-1.645;SOR=0.623 GT:AD:DP:GQ:PL 0/1:55,39:94:99:779,0,1366 17 10215411 rs147487203 G A 1373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-1.204;SOR=0.841 GT:AD:DP:GQ:PL 0/1:75,59:134:99:1402,0,2066 17 10216510 rs4791401 G A 5716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.861;ClippingRankSum=0;DB;DP=527;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.268;SOR=0.74 GT:AD:DP:GQ:PL 0/1:283,242:525:99:5745,0,6909 17 10216686 rs9989461 G A 4111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.527;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=0.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.862;SOR=0.738 GT:AD:DP:GQ:PL 0/1:182,164:346:99:4140,0,4482 17 10223714 rs2074877 T C 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.242;SOR=0.687 GT:AD:DP:GQ:PL 0/1:90,85:175:99:1920,0,2190 17 10236465 rs2240579 G A 4153.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.51;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4182,451,0 17 10243717 rs3760423 G A 2854.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2883,303,0 17 10297658 rs8069834 A G 12832.8 PASS AC=2;AF=1;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=29.98;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,428:428:99:12861,1283,0 17 10304261 rs3744552 G A 2799.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2828,264,0 17 10318636 rs8068729 A G 6793.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,241:241:99:6822,722,0 17 10359782 rs970292 A G 1414.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1443,149,0 17 10402147 . C T 4554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.939;ClippingRankSum=0;DP=349;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.357;SOR=0.55 GT:AD:DP:GQ:PL 0/1:159,188:347:99:4583,0,4081 17 10415840 rs2007027 A G 4647.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4676,438,0 17 10533595 rs3216886 C CT 9647.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.217;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;MQRankSum=0.155;QD=36.54;ReadPosRankSum=-0.354;SOR=1.127 GT:AD:DP:GQ:PL 1/1:2,262:264:99:9685,719,0 17 10535349 rs2239936 C G 5280.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=32.2;SOR=1.759 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5309,492,0 17 10536018 rs2285479 G A 4229.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4258,434,0 17 10541515 rs2285477 C T 10032.8 PASS AC=2;AF=1;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,339:339:99:10061,1016,0 17 10542471 rs2285475 T G 4340.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4369,413,0 17 10542765 rs2285474 A G 5025.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5054,483,0 17 10542803 rs2285473 T C 5064.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.89;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5093,461,0 17 10542886 rs2285472 T C 6213.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.103 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6242,616,0 17 10543463 rs2285469 T C 7463.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=29.74;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7492,752,0 17 10544018 rs876660 T C 4160.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=1.22 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4189,414,0 17 10544416 rs876657 G T 3816.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.241 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3845,387,0 17 10544696 rs3216884 GA G 1537.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=5.145;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=21.97;ReadPosRankSum=-1.107;SOR=0.154 GT:AD:DP:GQ:PL 1/1:4,66:72:99:1575,102,0 17 10546130 rs2285468 T G 13214.8 PASS AC=2;AF=1;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.12;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,399:399:99:13243,1197,0 17 10614442 rs406446 A G 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.298;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=1.056;SOR=0.657 GT:AD:DP:GQ:PL 0/1:43,42:85:99:1188,0,982 17 10633181 rs3826448 A G 2438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.083;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=-0.217;QD=11.9;ReadPosRankSum=0.228;SOR=0.555 GT:AD:DP:GQ:PL 0/1:113,92:205:99:2467,0,2795 17 11511457 rs11078022 C T 1283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.868;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=1.114;SOR=0.677 GT:AD:DP:GQ:PL 0/1:71,54:125:99:1312,0,1702 17 11520768 rs190793029 G A 1505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.371;SOR=0.718 GT:AD:DP:GQ:PL 0/1:66,67:133:99:1534,0,1602 17 11523082 rs9892256 A G 3262.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3291,327,0 17 11532835 rs9895535 A G 4209.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4238,410,0 17 11572669 rs73975043 G A 3129.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3158,304,0 17 11583089 rs8071438 T C 2611.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=1.525 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2640,246,0 17 11648332 rs3744578 C T 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.71;SOR=0.593 GT:AD:DP:GQ:PL 0/1:76,80:156:99:1854,0,1790 17 11651057 rs3744581 A G 1553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.591;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-2.237;SOR=1.008 GT:AD:DP:GQ:PL 0/1:62,60:122:99:1582,0,1566 17 11757556 rs12449553 C G 2792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.447;SOR=0.667 GT:AD:DP:GQ:PL 0/1:133,119:252:99:2821,0,3446 17 11786951 rs8070256 T C 2061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.8;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=2.74;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=0.045;SOR=0.91 GT:AD:DP:GQ:PL 0/1:86,79:165:99:2090,0,1938 17 11833287 rs2286303 A G 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.436;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.957;SOR=0.716 GT:AD:DP:GQ:PL 0/1:64,87:151:99:2048,0,1628 17 11833365 rs1859887 G A 2015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.323;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.923;SOR=0.99 GT:AD:DP:GQ:PL 0/1:86,83:169:99:2044,0,1928 17 11835331 rs17612861 G A 1409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.707;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=10.331;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.271;SOR=0.25 GT:AD:DP:GQ:PL 0/1:72,59:131:99:1438,0,2016 17 11887518 rs34299203 GA G 831.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=0.989;QD=13.2;ReadPosRankSum=-1.275;SOR=0.6 GT:AD:DP:GQ:PL 0/1:20,43:85:99:869,0,312 17 12647490 rs12709295 T C 5947.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5976,585,0 17 12898117 . C T 3307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.244;ClippingRankSum=0;DP=291;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-1.539;SOR=0.606 GT:AD:DP:GQ:PL 0/1:151,140:291:99:3336,0,3595 17 12899963 rs11545302 T C 2766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.024;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.325;SOR=0.585 GT:AD:DP:GQ:PL 0/1:147,120:267:99:2795,0,3593 17 12903599 rs3760316 A G 1262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-1.167;SOR=0.451 GT:AD:DP:GQ:PL 0/1:41,51:92:99:1291,0,951 17 12905574 rs55674356 T A 1730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=8.929;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.041;QD=11.69;ReadPosRankSum=-0.104;SOR=0.295 GT:AD:DP:GQ:PL 0/1:76,72:148:99:1759,0,1894 17 12905743 rs55825263 G A 3112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.142;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=8.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.384;SOR=0.86 GT:AD:DP:GQ:PL 0/1:151,131:282:99:3141,0,3733 17 12915009 rs4792311 G A 2260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.758;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.574;SOR=0.781 GT:AD:DP:GQ:PL 0/1:117,95:212:99:2289,0,2806 17 12920260 rs58809197 A G 871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.322;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.877;SOR=0.842 GT:AD:DP:GQ:PL 0/1:59,33:92:99:900,0,1586 17 13399616 rs62057033 A T 2219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.09;MQRankSum=0.867;QD=11.87;ReadPosRankSum=-0.615;SOR=0.701 GT:AD:DP:GQ:PL 0/1:92,95:187:99:2248,0,2266 17 13980350 rs2072279 G A 1337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.478;SOR=0.91 GT:AD:DP:GQ:PL 0/1:85,57:142:99:1366,0,2181 17 14005439 rs2159132 G A 2052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.582;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=4.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.132;SOR=0.397 GT:AD:DP:GQ:PL 0/1:63,89:152:99:2081,0,1560 17 14095309 rs2230354 A G 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=57.85;MQRankSum=-3.226;QD=9.95;ReadPosRankSum=-0.434;SOR=0.976 GT:AD:DP:GQ:PL 0/1:68,46:114:99:1162,0,1807 17 14139191 rs148329066 C G 875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.83;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40.13;MQRankSum=-1.929;QD=6.74;ReadPosRankSum=1.799;SOR=0.748 GT:AD:DP:GQ:PL 0/1:89,41:130:99:904,0,2430 17 14139891 rs62052131 A C 3619.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.81;QD=29.67;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3648,366,0 17 14140080 rs17679866 C T 3074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=55.09;MQRankSum=1.185;QD=10.57;ReadPosRankSum=-0.306;SOR=0.658 GT:AD:DP:GQ:PL 0/1:147,144:291:99:3103,0,3347 17 14140103 rs4792453 A G 8401.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.71;QD=28.97;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8430,868,0 17 14248423 rs9906855 T C 5428.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.9;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.745;MLEAC=2;MLEAF=1;MQ=50.77;MQRankSum=1.741;QD=30.16;ReadPosRankSum=-0.589;SOR=0.77 GT:AD:DP:GQ:PL 1/1:1,179:180:99:5457,508,0 17 15234895 rs7226363 C T 3897.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=1.479 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3926,369,0 17 15343524 rs71150251 C CCTT 5885.73 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.27;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,130:130:99:5923,397,0 17 15406467 rs140682517 G A 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=1.48;SOR=0.837 GT:AD:DP:GQ:PL 0/1:44,45:89:99:1095,0,1216 17 15492409 rs151442 T C 2375.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.92;QD=35.46;SOR=2.2 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2404,202,0 17 15492426 rs28445278 C T 2641.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.98;QD=33.44;SOR=1.893 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2670,237,0 17 15517060 rs370671983 GA G 46.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.812;MLEAC=1;MLEAF=0.5;MQ=54.68;MQRankSum=-12.4;QD=0.22;ReadPosRankSum=-1.915;SOR=1.008 GT:AD:DP:GQ:PL 0/1:181,32:228:84:84,0,4273 17 15604485 rs78494624 T C 136.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=6.316;MLEAC=1;MLEAF=0.5;MQ=56.46;MQRankSum=-7.676;QD=0.66;ReadPosRankSum=2.192;SOR=0.57 GT:AD:DP:GQ:PL 0/1:176,30:206:99:165,0,4391 17 15620481 rs2530064 C T 3999.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.86;QD=30.77;SOR=2.161 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4028,390,0 17 15973844 rs12942295 A T 4197.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.273 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4226,407,0 17 16229232 rs15739 A G 2364.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2393,243,0 17 16325968 rs8121 A G 2243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.476;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-2.487;SOR=0.963 GT:AD:DP:GQ:PL 0/1:103,94:197:99:2272,0,2319 17 16326005 rs1129235 A C 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.025;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.504;SOR=0.963 GT:AD:DP:GQ:PL 0/1:118,106:224:99:2535,0,2758 17 16336992 rs14039 C G 2920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.693;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.367;SOR=0.542 GT:AD:DP:GQ:PL 0/1:154,127:281:99:2949,0,3540 17 16346932 rs4792745 G T 2854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.332;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=1.127;SOR=0.791 GT:AD:DP:GQ:PL 0/1:82,114:196:99:2883,0,2114 17 16843084 rs56063729 A G 3855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.097;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=8.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=0.097;SOR=1.114 GT:AD:DP:GQ:PL 0/1:136,144:280:99:3884,0,3130 17 16855878 rs8072293 C T 2191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=1.533;SOR=0.529 GT:AD:DP:GQ:PL 0/1:113,100:213:99:2220,0,2716 17 17039561 rs3833098 CCAG C 3258.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=2.52;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.005;QD=17.33;ReadPosRankSum=0.504;SOR=0.894 GT:AD:DP:GQ:PL 0/1:99,89:194:99:3296,0,3644 17 17046024 rs3744137 C A 2165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=-0.464;SOR=0.558 GT:AD:DP:GQ:PL 0/1:137,94:231:99:2194,0,3402 17 17062241 rs11551189 C G 3406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.69;MQRankSum=-0.545;QD=15.56;ReadPosRankSum=0.258;SOR=0.684 GT:AD:DP:GQ:PL 0/1:83,136:219:99:3435,0,1949 17 17122327 rs8065832 G A 1619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-2.085;SOR=0.561 GT:AD:DP:GQ:PL 0/1:85,73:158:99:1648,0,2106 17 17127471 rs1736219 G A 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.912;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=1.268;SOR=0.838 GT:AD:DP:GQ:PL 0/1:66,55:121:99:1303,0,1572 17 17152363 rs11336908 GA G 44.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.09;ReadPosRankSum=-0.65;SOR=0.627 GT:AD:DP:GQ:PL 0/1:33,8:43:82:82,0,716 17 17168164 rs3182911 G A 1374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.013;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.295;SOR=0.646 GT:AD:DP:GQ:PL 0/1:45,62:107:99:1403,0,1241 17 17179481 rs4985761 G A 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.175;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.585;SOR=0.767 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1607,0,1856 17 17409560 rs7946 C T 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.366;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.82;SOR=0.836 GT:AD:DP:GQ:PL 0/1:50,47:97:99:1018,0,1403 17 17697093 . CCAGCAGCAGCAG C 5286.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.24;ClippingRankSum=0;DP=428;ExcessHet=3.0103;FS=2.504;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.758;QD=19.58;ReadPosRankSum=1.252;SOR=0.838 GT:AD:DP:GQ:PL 0/1:131,139:303:99:5324,0,6541 17 17698254 rs8067439 G A 3376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.992;SOR=0.749 GT:AD:DP:GQ:PL 0/1:167,140:307:99:3405,0,4385 17 17707105 rs3818717 T C 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.869;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.926;SOR=0.724 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1811,0,1948 17 17719503 . G GCCCCCCAACCCCCCCACCCCCGCCACCCCACACCCCTGCCACCCCCCAGCCCCACCCCCCCACCCCCAATCCCCCCACCCTCCCCACTCCCGCCAT 1384.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=-0;QD=173.09;ReadPosRankSum=2.369;SOR=1.179 GT:AD:DP:GQ:PL 1/1:3,5:8:84:1422,84,0 17 17896090 rs4368210 C T 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=-1.093;SOR=0.726 GT:AD:DP:GQ:PL 0/1:90,77:167:99:1735,0,2144 17 17896205 rs4584886 C T 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.149;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-0.132;SOR=0.934 GT:AD:DP:GQ:PL 0/1:75,64:139:99:1487,0,1815 17 17897739 rs4924832 T C 1615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.553;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.961;SOR=0.864 GT:AD:DP:GQ:PL 0/1:75,66:141:99:1644,0,1739 17 17948475 rs2955355 G A 1029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=5.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.161;SOR=0.277 GT:AD:DP:GQ:PL 0/1:34,47:81:99:1058,0,828 17 17960011 rs16960835 C T 1319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.198;SOR=0.582 GT:AD:DP:GQ:PL 0/1:47,57:104:99:1348,0,1097 17 17997209 rs2230316 G A 4115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.562;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=1.675;SOR=0.802 GT:AD:DP:GQ:PL 0/1:167,172:339:99:4144,0,3773 17 18003671 rs2272570 T G 2369.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2398,246,0 17 18023897 rs2955365 G A 4560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.972;ClippingRankSum=0;DB;DP=428;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=0.039;SOR=0.682 GT:AD:DP:GQ:PL 0/1:235,193:428:99:4589,0,6268 17 18024013 rs2955366 A G 3979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.727;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=3.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.49;SOR=0.528 GT:AD:DP:GQ:PL 0/1:165,168:333:99:4008,0,3707 17 18024266 rs2955367 T G 4852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.626;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=11.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.165;SOR=0.37 GT:AD:DP:GQ:PL 0/1:147,207:354:99:4881,0,3398 17 18034131 . A AGTGTGT 632.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0;QD=17.58;ReadPosRankSum=0.347;SOR=0.61 GT:AD:DP:GQ:PL 0/1:21,15:57:99:670,0,1353 17 18041507 rs2280777 C T 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=-0.014;SOR=0.709 GT:AD:DP:GQ:PL 0/1:125,109:234:99:2432,0,3019 17 18046058 rs854778 A C 2491.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.047;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.96;ReadPosRankSum=0.514;SOR=1.143 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2520,221,0 17 18046898 rs854777 T C 7322.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=1.288 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7351,678,0 17 18052867 rs2955379 T C 6433.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6462,651,0 17 18055229 rs854772 G A 5407.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5436,558,0 17 18057167 rs712270 A T 3220.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.432;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=-1.084;SOR=0.637 GT:AD:DP:GQ:PL 0/1:183,149:332:99:3249,0,3872 17 18057215 rs9916193 C G 4038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-1.92;SOR=0.63 GT:AD:DP:GQ:PL 0/1:119,165:284:99:4067,0,2865 17 18058521 rs712272 C T 2341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.001;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.4;SOR=0.899 GT:AD:DP:GQ:PL 0/1:114,103:217:99:2370,0,2625 17 18059494 rs861278 C T 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.824;SOR=0.893 GT:AD:DP:GQ:PL 0/1:107,95:202:99:2152,0,2537 17 18064730 rs8077577 C T 3766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-2.845;SOR=0.689 GT:AD:DP:GQ:PL 0/1:135,163:298:99:3795,0,2984 17 18065888 rs62073604 T C 1333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.095;SOR=0.655 GT:AD:DP:GQ:PL 0/1:44,61:105:99:1362,0,926 17 18077175 rs854800 T C 8569.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,298:298:99:8598,893,0 17 18088094 rs11078411 C T 2775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.264;SOR=0.817 GT:AD:DP:GQ:PL 0/1:116,104:220:99:2804,0,3086 17 18137141 rs2290505 A G 2289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.365;SOR=0.612 GT:AD:DP:GQ:PL 0/1:87,94:181:99:2318,0,2184 17 18148485 rs7498 G A 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.3;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.344;SOR=0.826 GT:AD:DP:GQ:PL 0/1:82,78:160:99:2023,0,2103 17 18161744 rs59366579 C T 1982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.495;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=4.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.74;ReadPosRankSum=-0.383;SOR=0.39 GT:AD:DP:GQ:PL 0/1:41,85:126:99:2011,0,987 17 18167505 rs2605143 T C 7302.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,222:222:99:7331,666,0 17 18193941 rs2230154 G A 2754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.117;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.805;SOR=0.695 GT:AD:DP:GQ:PL 0/1:134,126:262:99:2783,0,2995 17 18194011 rs3817992 C A 2683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.243;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.483;SOR=0.601 GT:AD:DP:GQ:PL 0/1:116,112:228:99:2712,0,2841 17 18205750 rs56191269 TGGAGAGTGAA T 2548.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.381;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.614;QD=16.44;ReadPosRankSum=1.468;SOR=0.695 GT:AD:DP:GQ:PL 0/1:87,68:155:99:2586,0,9301 17 18208544 rs7207123 G A 839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.058;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=-0.735;SOR=0.688 GT:AD:DP:GQ:PL 0/1:55,40:95:99:868,0,1359 17 18219835 rs3829956 T C 2627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.2;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=-0.371;SOR=0.631 GT:AD:DP:GQ:PL 0/1:91,100:191:99:2656,0,2123 17 18220674 rs8080966 C T 2279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.374;SOR=0.687 GT:AD:DP:GQ:PL 0/1:104,95:199:99:2308,0,2576 17 18220770 rs1563632 G A 4297.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4326,420,0 17 18221010 rs12449313 A G 1747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.959;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.94;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=-2.896;SOR=0.542 GT:AD:DP:GQ:PL 0/1:100,70:170:99:1776,0,2524 17 18221134 rs1563631 C T 1557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=1.052;SOR=0.878 GT:AD:DP:GQ:PL 0/1:75,63:138:99:1586,0,1951 17 18226177 rs4925171 G T 3095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.92;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=0.064;SOR=0.634 GT:AD:DP:GQ:PL 0/1:107,126:233:99:3124,0,3074 17 18232096 rs1979277 G A 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.624;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.339;SOR=0.451 GT:AD:DP:GQ:PL 0/1:84,86:170:99:2113,0,2432 17 18284262 rs570145 G A 6014.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6043,610,0 17 18286916 rs112094897 A AG 5090.73 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.83;QD=44.66;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,114:114:99:1|1:18286916_A_AG:5128,349,0 17 18291544 rs586322 A G 2057.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.93;QD=27.44;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2086,224,0 17 18380154 rs1682220 A G 3354.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.67;QD=30.22;SOR=1.295 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3383,333,0 17 18396007 rs1725650 C G 1098.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.41;QD=33.3;SOR=2.517 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1127,99,0 17 18396131 rs138238232 T C 209.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.61;QD=29.97;SOR=2.584 GT:AD:DP:GQ:PL 1/1:0,7:7:21:238,21,0 17 18565350 rs9912644 G C 3366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.934;ClippingRankSum=0;DB;DP=394;ExcessHet=3.0103;FS=3.937;MLEAC=1;MLEAF=0.5;MQ=51.38;MQRankSum=4.886;QD=8.55;ReadPosRankSum=-0.039;SOR=0.681 GT:AD:DP:GQ:PL 0/1:248,146:394:99:3395,0,6325 17 18565423 rs9912852 G A 3632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.984;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=2.475;QD=11.25;ReadPosRankSum=-1.297;SOR=0.59 GT:AD:DP:GQ:PL 0/1:175,148:323:99:3661,0,4842 17 18584123 rs200143783 A G 885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.263;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.5;MQ=57.32;MQRankSum=-8.87;QD=5.91;ReadPosRankSum=-4.699;SOR=0.986 GT:AD:DP:GQ:PL 0/1:101,49:150:99:914,0,2399 17 18584142 rs116808485 A G 450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.52;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.5;MQ=56.78;MQRankSum=-10.639;QD=3.85;ReadPosRankSum=-3.976;SOR=1.013 GT:AD:DP:GQ:PL 0/1:88,29:117:99:479,0,2075 17 18630995 rs8075739 G A 4168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=396;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.5;MQ=56.87;MQRankSum=-0.071;QD=10.61;ReadPosRankSum=2.44;SOR=0.777 GT:AD:DP:GQ:PL 0/1:212,181:393:99:4197,0,5243 17 18647539 rs116483657 G A 636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=51.5;MQRankSum=-9.763;QD=4.58;ReadPosRankSum=-0.852;SOR=0.765 GT:AD:DP:GQ:PL 0/1:103,36:139:99:665,0,2697 17 18647625 rs74502778 T A 1707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.741;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=15.751;MLEAC=1;MLEAF=0.5;MQ=47.28;MQRankSum=-7.262;QD=9.04;ReadPosRankSum=-0.794;SOR=1.292 GT:AD:DP:GQ:PL 0/1:110,79:189:99:1736,0,2650 17 18653070 rs9895749 G A 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.76;MQRankSum=-1.63;QD=10.56;ReadPosRankSum=-0.07;SOR=0.697 GT:AD:DP:GQ:PL 0/1:104,97:201:99:2150,0,2529 17 18671961 rs144931466 C T 2539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.29;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.49;MQRankSum=-0.96;QD=11.92;ReadPosRankSum=1.597;SOR=0.682 GT:AD:DP:GQ:PL 0/1:99,114:213:99:2568,0,2354 17 18682399 rs147994056 A G 99.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=24.76;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:127,12,0 17 18694277 rs61075345 G A 7168.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=43.15;QD=29.02;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7197,741,0 17 18702220 rs8080471 T C 6334.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.43;QD=29.06;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6363,653,0 17 18775900 rs4393623 A G 1864.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1893,192,0 17 18834021 rs1801755 T C 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.864;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.793;SOR=0.931 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1279,0,1286 17 18855611 rs2076562 T C 3335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.173;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.199;SOR=0.682 GT:AD:DP:GQ:PL 0/1:131,143:274:99:3364,0,2957 17 18874685 rs3071666 C CGGT 9628.73 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=45.21;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,213:213:99:9666,646,0 17 18874720 rs916823 C G 7057.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7086,685,0 17 18880268 rs2472715 C A 6910.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6939,692,0 17 18882991 rs2472714 T A 4861.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.976;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.01;ReadPosRankSum=-0.621;SOR=0.288 GT:AD:DP:GQ:PL 1/1:1,179:180:99:4890,524,0 17 18918510 rs56122861 A ACGGTACGGGGGTGGGGGC 312.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.44;MQRankSum=5.16;QD=7.82;ReadPosRankSum=-0.207;SOR=0.765 GT:AD:DP:GQ:PL 0/1:28,12:40:99:350,0,1267 17 19232078 rs6587220 T C 4352.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4381,425,0 17 19247075 rs4924987 G A 3353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=2.135;SOR=0.643 GT:AD:DP:GQ:PL 0/1:160,137:297:99:3382,0,3923 17 19474875 rs111653425 C T 762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.83;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.587;SOR=0.832 GT:AD:DP:GQ:PL 0/1:43,35:78:99:791,0,966 17 19566637 rs373813595 T C 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.513;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.23;ReadPosRankSum=-0.639;SOR=0.904 GT:AD:DP:GQ:PL 0/1:55,65:120:99:1856,0,1231 17 19578873 rs7216 A T 1211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.4;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.614;SOR=0.747 GT:AD:DP:GQ:PL 0/1:42,54:96:99:1240,0,976 17 19643810 rs3826507 G A 1644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-1.995;SOR=0.769 GT:AD:DP:GQ:PL 0/1:77,70:147:99:1673,0,1972 17 19644472 rs2072330 A T 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-1.069;SOR=0.586 GT:AD:DP:GQ:PL 0/1:74,91:165:99:2183,0,1651 17 19645938 rs887241 A C 3264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-1.36;SOR=0.659 GT:AD:DP:GQ:PL 0/1:140,133:273:99:3293,0,3612 17 19699605 rs35999341 CAT C 2299.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=0.339;QD=34.32;ReadPosRankSum=-0.446;SOR=0.193 GT:AD:DP:GQ:PL 1/1:3,64:75:99:2323,121,0 17 19702892 rs11456096 C CA 552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.722;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.125;SOR=0.473 GT:AD:DP:GQ:PL 0/1:19,34:72:99:581,0,332 17 19713740 rs150122 C T 2303.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2332,242,0 17 19729495 rs157397 T C 2279.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2308,233,0 17 19746425 rs200532603 T C 651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.072;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=3.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=0.106;SOR=0.516 GT:AD:DP:GQ:PL 0/1:38,31:69:99:680,0,866 17 20000131 rs4925085 G T 1764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.466;SOR=0.488 GT:AD:DP:GQ:PL 0/1:75,72:147:99:1793,0,1883 17 20107773 rs2703805 T C 3144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=14.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=2.391;SOR=0.594 GT:AD:DP:GQ:PL 0/1:170,129:299:99:3173,0,4412 17 20108239 rs2703806 A T 2661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.205;SOR=0.753 GT:AD:DP:GQ:PL 0/1:102,109:211:99:2690,0,2523 17 20109189 rs2703807 C T 1851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=1.129;SOR=0.639 GT:AD:DP:GQ:PL 0/1:85,80:165:99:1880,0,1970 17 20163529 rs2703791 A G 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.219;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=0.829;SOR=0.467 GT:AD:DP:GQ:PL 0/1:77,62:139:99:1380,0,1789 17 20354836 rs150485558 A G 1326.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.5;MQ=38.13;MQRankSum=-4.8;QD=6.38;ReadPosRankSum=-1.301;SOR=0.641 GT:AD:DP:GQ:PL 0/1:135,73:208:99:1355,0,3591 17 20370735 rs4985833 T C 3616.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.23;QD=28.48;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3645,381,0 17 20370767 rs4985834 G C 57.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.454;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=11.472;MLEAC=1;MLEAF=0.5;MQ=41.06;MQRankSum=-1.869;QD=0.51;ReadPosRankSum=-2.956;SOR=2.364 GT:AD:DP:GQ:PL 0/1:101,13:114:86:86,0,2673 17 20370782 rs10687699 A ATC 3568.73 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.3;QD=42.48;SOR=1.754 GT:AD:DP:GQ:PL 1/1:0,84:84:99:3606,252,0 17 20370796 rs28699183 T C 2499.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.21;QD=30.86;SOR=2.162 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2528,243,0 17 20483187 rs199771686 G C 3602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.219;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=6.329;MLEAC=1;MLEAF=0.5;MQ=51.44;MQRankSum=-2.294;QD=12.82;ReadPosRankSum=0.475;SOR=0.819 GT:AD:DP:GQ:PL 0/1:146,135:281:99:3631,0,3593 17 20798977 rs9906906 A G 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.73;MLEAC=1;MLEAF=0.5;MQ=49.67;MQRankSum=-7.464;QD=11.18;ReadPosRankSum=0.189;SOR=0.806 GT:AD:DP:GQ:PL 0/1:83,58:141:99:1605,0,2338 17 20798992 rs8073465 C T 2366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.405;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=49.1;MQRankSum=6.099;QD=15.37;ReadPosRankSum=2.461;SOR=0.793 GT:AD:DP:GQ:PL 0/1:66,88:154:99:2395,0,2129 17 20799119 rs2279263 A G 4727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.529;ClippingRankSum=0;DB;DP=358;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=52.74;MQRankSum=-12.232;QD=13.21;ReadPosRankSum=0.53;SOR=0.752 GT:AD:DP:GQ:PL 0/1:169,189:358:99:4756,0,4044 17 20911204 rs11541311 G T 1480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.67;ReadPosRankSum=0.43;SOR=0.499 GT:AD:DP:GQ:PL 0/1:120,73:193:99:1509,0,3007 17 20914635 rs2291035 G A 2418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.168;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=2.288;SOR=0.731 GT:AD:DP:GQ:PL 0/1:81,93:174:99:2447,0,1994 17 20924523 rs2291037 G A 2190.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2219,228,0 17 21087671 rs3744226 C T 3402.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3431,357,0 17 21147404 rs897926 A G 4583.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4612,462,0 17 21156530 rs201190568 G GC 3150.73 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.4;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3188,268,0 17 21198972 rs2363221 T C 1065.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=14.999;MLEAC=1;MLEAF=0.5;MQ=56.93;MQRankSum=-10.041;QD=6.54;ReadPosRankSum=-0.211;SOR=0.994 GT:AD:DP:GQ:PL 0/1:108,55:163:99:1094,0,2737 17 21199051 rs56020453 T C 899.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.022;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=68.188;MLEAC=1;MLEAF=0.5;MQ=57.45;MQRankSum=-9.146;QD=5.45;ReadPosRankSum=1.058;SOR=4.68 GT:AD:DP:GQ:PL 0/1:121,44:165:99:928,0,3065 17 21204266 rs2230435 T C 2550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-0.957;QD=12.32;ReadPosRankSum=-0.27;SOR=0.704 GT:AD:DP:GQ:PL 0/1:100,107:207:99:2579,0,2412 17 21206556 rs736103 C T 658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.433;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.21;MQRankSum=-5.908;QD=6.52;ReadPosRankSum=-1.108;SOR=0.67 GT:AD:DP:GQ:PL 0/1:69,32:101:99:687,0,1809 17 21318698 rs1657738 C T 6977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0;DB;DP=698;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.5;MQ=54.19;MQRankSum=-11.412;QD=10;ReadPosRankSum=-1.424;SOR=0.753 GT:AD:DP:GQ:PL 0/1:388,310:698:99:7006,0,9786 17 21318770 rs3752033 G A 5159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.829;ClippingRankSum=0;DB;DP=828;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.5;MQ=54.49;MQRankSum=-4.172;QD=6.24;ReadPosRankSum=1.512;SOR=0.524 GT:AD:DP:GQ:PGT:PID:PL 0/1:659,168:827:99:0|1:21318770_G_A:5188,0,27631 17 21318773 rs3752034 G A 5203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0;DB;DP=846;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.5;MQ=54.63;MQRankSum=-3.72;QD=6.16;ReadPosRankSum=0.697;SOR=0.543 GT:AD:DP:GQ:PGT:PID:PL 0/1:669,176:845:99:0|1:21318770_G_A:5232,0,27648 17 21318821 rs1714865 A C 4721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0;DB;DP=882;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.15;MQRankSum=-2.009;QD=5.37;ReadPosRankSum=0.304;SOR=0.706 GT:AD:DP:GQ:PL 0/1:638,241:879:99:4750,0,17546 17 21318897 rs1657739 G C 11159.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.926;ClippingRankSum=0;DB;DP=862;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=59.82;MQRankSum=0.091;QD=12.95;ReadPosRankSum=-0.981;SOR=0.867 GT:AD:DP:GQ:PL 0/1:451,411:862:99:11188,0,11806 17 21318952 rs8076599 A G 13177.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.776;ClippingRankSum=0;DB;DP=1005;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-2.182;QD=13.13;ReadPosRankSum=1.981;SOR=0.636 GT:AD:DP:GQ:PL 0/1:489,515:1004:99:13206,0,12096 17 21319007 rs1657740 G A 23041.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0;DB;DP=1133;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-2.724;QD=20.35;ReadPosRankSum=0.897;SOR=0.735 GT:AD:DP:GQ:PL 0/1:543,589:1132:99:23070,0,22353 17 21319008 rs1657741 G C 22991.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.218;ClippingRankSum=0;DB;DP=1135;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-2.719;QD=20.31;ReadPosRankSum=0.865;SOR=0.734 GT:AD:DP:GQ:PL 0/1:543,589:1134:99:23020,0,22353 17 21319121 rs1714864 C T 12161.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.229;ClippingRankSum=0;DB;DP=890;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=0.163;QD=13.68;ReadPosRankSum=-0.015;SOR=0.592 GT:AD:DP:GQ:PL 0/1:415,474:889:99:12190,0,10562 17 21319230 rs1657742 G C 12796.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0;DB;DP=1015;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=1.104;QD=12.7;ReadPosRankSum=-0.054;SOR=0.705 GT:AD:DP:GQ:PL 0/1:512,496:1011:99:12825,0,13684 17 21319302 rs1657743 T C 13691.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.536;ClippingRankSum=0;DB;DP=985;ExcessHet=3.0103;FS=3.182;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.942;QD=13.91;ReadPosRankSum=-0.127;SOR=0.576 GT:AD:DP:GQ:PL 0/1:477,507:984:99:13720,0,11657 17 21319399 rs4985866 A G 4062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.404;ClippingRankSum=0;DB;DP=962;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.803;QD=4.23;ReadPosRankSum=-1.08;SOR=0.607 GT:AD:DP:GQ:PL 0/1:727,233:960:99:4091,0,19405 17 21319473 rs1657744 G A 8602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.423;ClippingRankSum=0;DB;DP=773;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.219;QD=11.17;ReadPosRankSum=-0.25;SOR=0.746 GT:AD:DP:GQ:PL 0/1:425,345:770:99:8631,0,12412 17 21319767 rs1612176 C T 13765.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0;DB;DP=781;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=-1.468;QD=17.63;ReadPosRankSum=0.158;SOR=0.664 GT:AD:DP:GQ:PGT:PID:PL 0/1:411,370:781:99:0|1:21319767_C_T:13794,0,18328 17 21319785 rs1657745 C T 14092.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0;DB;DP=800;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-0.966;QD=17.64;ReadPosRankSum=0.367;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL 0/1:422,377:799:99:0|1:21319767_C_T:14121,0,18606 17 21319860 rs2917720 C T 8399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.239;ClippingRankSum=0;DB;DP=740;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-4.205;QD=11.38;ReadPosRankSum=2.366;SOR=0.664 GT:AD:DP:GQ:PL 0/1:395,343:738:99:8428,0,9827 17 21319943 rs5021699 A G 7631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.54;ClippingRankSum=0;DB;DP=659;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-4.793;QD=11.62;ReadPosRankSum=0.489;SOR=0.628 GT:AD:DP:GQ:PL 0/1:329,328:657:99:7660,0,8119 17 25909850 rs2293181 G T 7777.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7806,759,0 17 25931718 rs55646895 G C 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-0.098;SOR=0.65 GT:AD:DP:GQ:PL 0/1:65,82:147:99:1931,0,1600 17 25970642 rs361498 A T 3352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.85;MQRankSum=1.195;QD=9.8;ReadPosRankSum=1.383;SOR=0.696 GT:AD:DP:GQ:PL 0/1:187,155:342:99:3381,0,4180 17 26089867 rs1060826 T C 1564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-0.3;SOR=0.817 GT:AD:DP:GQ:PL 0/1:73,71:144:99:1593,0,1795 17 26092555 rs2297512 G A 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=1.455;SOR=0.822 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1616,0,1666 17 26092631 rs1060822 A G 2264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.019;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.384;SOR=0.69 GT:AD:DP:GQ:PL 0/1:89,93:182:99:2293,0,2042 17 26109030 rs3729508 T C 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=1.014;SOR=0.907 GT:AD:DP:GQ:PL 0/1:63,54:117:99:1183,0,1509 17 26676135 rs13469 C T 1251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=1.666;SOR=0.666 GT:AD:DP:GQ:PL 0/1:60,57:117:99:1280,0,1366 17 26684390 rs11448856 G GC 7897.73 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=44.12;SOR=0.798 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,179:179:99:1|1:26684390_G_GC:7935,539,0 17 26684394 rs17856014 T G 8028.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=44.85;SOR=0.847 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,179:179:99:1|1:26684390_G_GC:8057,551,0 17 26684449 rs4795429 G C 5152.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=31.81;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5181,486,0 17 26691321 rs9910163 A G 3919.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=1.374 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3948,369,0 17 26692224 rs11387886 A AG 5372.73 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=35.35;SOR=1.056 GT:AD:DP:GQ:PL 1/1:0,152:152:99:5410,460,0 17 26694861 rs704 G A 2834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.215;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.811;SOR=0.626 GT:AD:DP:GQ:PL 0/1:128,117:245:99:2863,0,3065 17 26695704 rs2227725 A G 6796.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6825,693,0 17 26699121 rs7212814 G C 7319.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7348,729,0 17 26699195 rs11437592 C CG 10742.7 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.14;SOR=0.727 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,238:238:99:1|1:26699195_C_CG:10780,722,0 17 26699199 rs11437593 G GC 10972.7 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.72;SOR=0.71 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,240:240:99:1|1:26699195_C_CG:11010,740,0 17 26699205 rs11340312 GA G 11147.7 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=44.41;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,251:251:99:1|1:26699195_C_CG:11185,758,0 17 26699367 rs11437594 G GC 11021.7 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=37.49;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,294:294:99:11059,891,0 17 26708298 . A AGC 6193.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.117;ClippingRankSum=0;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.97;ReadPosRankSum=-1.849;SOR=0.82 GT:AD:DP:GQ:PL 1/1:2,198:200:99:6231,562,0 17 26708302 . GGT G 9162.73 PASS AC=2;AF=1;AN=2;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.14;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,203:203:99:9200,623,0 17 26708550 rs11658194 T C 9641.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=1.032 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,216:216:99:1|1:26708550_T_C:9670,653,0 17 26708551 rs11652384 C G 9641.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=1.008 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,216:216:99:1|1:26708550_T_C:9670,653,0 17 26727721 rs5819844 GA G 6417.73 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.06;QD=37.31;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,172:172:99:6455,518,0 17 26816365 rs11443311 G GC 2223.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.88;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.04;QD=12.56;ReadPosRankSum=-0.097;SOR=0.739 GT:AD:DP:GQ:PL 0/1:91,86:177:99:2261,0,2440 17 26817537 rs11568466 G A 3378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.337;SOR=0.57 GT:AD:DP:GQ:PL 0/1:157,142:299:99:3407,0,3897 17 26824156 rs11567842 A G 2102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.221;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=1.39;SOR=0.481 GT:AD:DP:GQ:PL 0/1:73,83:156:99:2131,0,1744 17 26851501 rs614434 G A 693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.503;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=-0.91;QD=12.61;ReadPosRankSum=-1.086;SOR=0.966 GT:AD:DP:GQ:PL 0/1:29,26:55:99:722,0,792 17 26856261 rs548973 A G 1383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.885;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-0.006;SOR=0.671 GT:AD:DP:GQ:PL 0/1:65,52:117:99:1412,0,1715 17 26864302 rs532648 G C 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-1.972;SOR=0.919 GT:AD:DP:GQ:PL 0/1:103,72:175:99:1941,0,2888 17 27002402 rs9892089 A G 3909.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=1.628 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3938,383,0 17 27009749 rs12051648 C T 2058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.086;SOR=1.042 GT:AD:DP:GQ:PL 0/1:98,87:185:99:2087,0,2477 17 27075423 rs2070265 C T 3343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.895;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=1.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=1.699;SOR=0.759 GT:AD:DP:GQ:PL 0/1:133,129:262:99:3372,0,3461 17 27085564 rs2043031 A G 4484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.201;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.023;SOR=0.672 GT:AD:DP:GQ:PL 0/1:160,172:332:99:4513,0,3929 17 27185827 rs2242345 C T 1929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-0.406;SOR=0.525 GT:AD:DP:GQ:PL 0/1:102,84:186:99:1958,0,2654 17 27437134 rs2279958 A G 2248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-1.066;SOR=0.5 GT:AD:DP:GQ:PL 0/1:88,92:180:99:2277,0,2198 17 27438469 rs8076604 G A 2664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=1.649;SOR=0.595 GT:AD:DP:GQ:PL 0/1:133,114:247:99:2693,0,3342 17 27441077 rs12601535 C G 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=5.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.711;SOR=1.166 GT:AD:DP:GQ:PL 0/1:68,54:122:99:1345,0,1742 17 27613677 rs12452857 G A 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-1.285;SOR=0.783 GT:AD:DP:GQ:PL 0/1:62,68:130:99:1726,0,1588 17 27807416 rs56387760 A G 1018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.001;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.499;SOR=0.95 GT:AD:DP:GQ:PL 0/1:58,43:101:99:1047,0,1343 17 27829588 rs367720840 CT C 49.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=5.077;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.78;QD=0.55;ReadPosRankSum=-0.376;SOR=1.387 GT:AD:DP:GQ:PL 0/1:74,17:98:87:87,0,1726 17 27835138 rs508706 C T 2681.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2710,273,0 17 27861329 rs3744624 T C 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.176;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.75;ReadPosRankSum=0.102;SOR=0.673 GT:AD:DP:GQ:PL 0/1:71,88:159:99:2373,0,1749 17 27869968 rs507577 G A 2848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.968;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.549;SOR=0.824 GT:AD:DP:GQ:PL 0/1:137,115:252:99:2877,0,3414 17 27889578 rs539307 T C 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=2.415;SOR=0.648 GT:AD:DP:GQ:PL 0/1:71,69:140:99:1805,0,1647 17 27889963 rs721479 C G 2937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=5.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-1.391;SOR=1.003 GT:AD:DP:GQ:PL 0/1:150,122:272:99:2966,0,3974 17 27889986 rs542939 T C 8362.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8391,790,0 17 27904711 rs11080105 G A 737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.297;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=3.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.795;SOR=0.368 GT:AD:DP:GQ:PL 0/1:36,28:64:99:766,0,885 17 28268800 rs4567782 A C 841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-1.463;SOR=0.943 GT:AD:DP:GQ:PL 0/1:35,35:70:99:870,0,781 17 28296327 rs9897794 T G 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.164;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=0.453;SOR=0.477 GT:AD:DP:GQ:PL 0/1:58,74:132:99:1983,0,1441 17 28320248 rs4795524 T A 4278.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4307,448,0 17 28381141 rs4074170 C G 1563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-0.616;SOR=0.781 GT:AD:DP:GQ:PL 0/1:90,68:158:99:1592,0,2310 17 28407876 rs7221743 T G 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-2.56;SOR=0.649 GT:AD:DP:GQ:PL 0/1:82,80:162:99:1828,0,1953 17 28511978 rs1979572 G A 2277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.138;SOR=0.825 GT:AD:DP:GQ:PL 0/1:118,100:218:99:2306,0,2989 17 28749764 rs117331885 G A 1594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=2.06;SOR=0.998 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1623,0,1509 17 28778720 rs2253256 G C 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.168;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=10.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=0.11;SOR=1.556 GT:AD:DP:GQ:PL 0/1:57,55:112:99:1380,0,1444 17 28890203 rs216455 T C 1527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.371;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.677;SOR=0.99 GT:AD:DP:GQ:PL 0/1:70,55:125:99:1556,0,1781 17 29113016 rs34756112 A G 583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.31;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.71;ReadPosRankSum=-1.778;SOR=0.611 GT:AD:DP:GQ:PL 0/1:54,33:87:99:612,0,1240 17 29159404 rs999796 G C 1721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.307;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.36;ReadPosRankSum=0.328;SOR=0.63 GT:AD:DP:GQ:PL 0/1:127,79:206:99:1750,0,3114 17 29161202 rs9910051 A T 1652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.407;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=0.344;SOR=0.766 GT:AD:DP:GQ:PL 0/1:59,67:126:99:1681,0,1419 17 29161358 rs3816780 C T 1755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=0.328;SOR=0.671 GT:AD:DP:GQ:PL 0/1:76,68:144:99:1784,0,2046 17 29161503 rs11080134 A G 1354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.391;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=0.59;SOR=0.576 GT:AD:DP:GQ:PL 0/1:41,53:94:99:1383,0,1085 17 29161845 rs17826219 G A 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.292;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.635;QD=13.17;ReadPosRankSum=-1.888;SOR=0.644 GT:AD:DP:GQ:PL 0/1:83,95:178:99:2373,0,2224 17 29161955 rs72427574 ACAATGT A 3195.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=2.346;QD=18.16;ReadPosRankSum=-1.662;SOR=0.905 GT:AD:DP:GQ:PL 0/1:91,85:176:99:3233,0,6861 17 29162173 rs11655623 T C 2218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.185;SOR=0.583 GT:AD:DP:GQ:PL 0/1:105,88:193:99:2247,0,2757 17 29167653 rs3764421 A C 1252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.698;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.115;SOR=0.726 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1281,0,1320 17 29187497 rs9896095 A G 1251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=0.883;SOR=0.922 GT:AD:DP:GQ:PL 0/1:78,57:135:99:1280,0,1957 17 29195444 rs201420202 CT C 534.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.315;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.829;QD=10.28;ReadPosRankSum=0.566;SOR=0.804 GT:AD:DP:GQ:PL 0/1:22,30:57:99:572,0,376 17 29206433 rs9903862 G A 826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=-1.088;SOR=0.671 GT:AD:DP:GQ:PL 0/1:54,39:93:99:855,0,1551 17 29214387 rs11657270 T C 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.545;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.492;SOR=0.927 GT:AD:DP:GQ:PL 0/1:63,36:99:99:1019,0,1492 17 29226228 rs2433 T C 990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-1.693;SOR=0.591 GT:AD:DP:GQ:PL 0/1:62,46:108:99:1019,0,1590 17 29226630 rs28539246 T A 556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=-1.616;SOR=0.955 GT:AD:DP:GQ:PL 0/1:42,29:71:99:585,0,1149 17 29508775 rs1801052 G A 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.703;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=0.269;SOR=0.909 GT:AD:DP:GQ:PL 0/1:42,40:82:99:952,0,963 17 29508819 rs71142032 A AT 403.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.164;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.07;ReadPosRankSum=1.611;SOR=0.61 GT:AD:DP:GQ:PL 0/1:26,24:53:99:441,0,394 17 29553485 rs2285892 G A 2449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-1.052;QD=10.21;ReadPosRankSum=0.581;SOR=0.65 GT:AD:DP:GQ:PL 0/1:127,113:240:99:2478,0,2999 17 29623288 rs11080149 C T 1550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.38;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-1.272;SOR=0.629 GT:AD:DP:GQ:PL 0/1:58,68:126:99:1579,0,1439 17 29646032 rs1129506 G A 1064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=0.859;SOR=0.597 GT:AD:DP:GQ:PL 0/1:61,49:110:99:1093,0,1601 17 29654876 rs2285894 T A 908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=1.791;SOR=0.908 GT:AD:DP:GQ:PL 0/1:42,37:79:99:937,0,1013 17 29852092 rs2023795 A G 1842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.789;SOR=0.712 GT:AD:DP:GQ:PL 0/1:82,75:157:99:1871,0,2125 17 30183857 rs8068049 T C 2645.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=3.478;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27;ReadPosRankSum=1.973;SOR=0.595 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2674,252,0 17 30222002 rs3760454 T C 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.439;SOR=1.059 GT:AD:DP:GQ:PL 0/1:34,36:70:99:774,0,843 17 30293149 . CT C 203.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.408;ClippingRankSum=0;DP=69;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.29;ReadPosRankSum=1.15;SOR=0.836 GT:AD:DP:GQ:PL 0/1:44,18:67:99:241,0,953 17 30372739 rs1638299 C T 1279.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.5;MQ=54.72;MQRankSum=0.427;QD=4.85;ReadPosRankSum=-0.522;SOR=0.958 GT:AD:DP:GQ:PL 0/1:189,75:264:99:1308,0,4807 17 30659006 rs1019152 T A 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.137;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.69;ReadPosRankSum=-0.395;SOR=0.716 GT:AD:DP:GQ:PL 0/1:35,50:85:99:1277,0,821 17 30980972 rs2249638 G A 2315.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.911;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.57;ReadPosRankSum=-0.526;SOR=1.292 GT:AD:DP:GQ:PL 1/1:2,82:84:99:2344,202,0 17 31258686 rs72817027 G C 2557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-0.739;SOR=0.695 GT:AD:DP:GQ:PL 0/1:113,98:211:99:2586,0,3063 17 31260173 rs55951274 C A 2232.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=1.701;SOR=0.79 GT:AD:DP:GQ:PL 0/1:75,87:162:99:2261,0,1955 17 31322427 rs34727343 G A 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.31;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.894;SOR=0.767 GT:AD:DP:GQ:PL 0/1:60,56:116:99:1547,0,1587 17 31439097 rs140895516 AAG A 61.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.348;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=5.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.39;ReadPosRankSum=-1.415;SOR=1.358 GT:AD:DP:GQ:PL 0/1:145,15:164:99:99,0,4941 17 32612894 rs1129844 G A 868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.04;ReadPosRankSum=0.236;SOR=0.736 GT:AD:DP:GQ:PL 0/1:62,46:108:99:897,0,1436 17 32906008 rs58529418 C G 3336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.125;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.966;SOR=0.748 GT:AD:DP:GQ:PL 0/1:131,137:268:99:3365,0,3114 17 33269648 rs2230553 C G 1042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-0.278;SOR=0.767 GT:AD:DP:GQ:PL 0/1:35,41:76:99:1071,0,887 17 33286664 rs2230552 A G 234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.43;ReadPosRankSum=-1.111;SOR=0.902 GT:AD:DP:GQ:PL 0/1:37,16:53:99:263,0,848 17 33288363 rs9635769 C T 5317.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5346,501,0 17 33288882 rs931196 T G 9680.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9709,891,0 17 33445549 rs9901455 G A 1617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.373;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.335;SOR=0.729 GT:AD:DP:GQ:PL 0/1:66,69:135:99:1646,0,1506 17 33448818 rs1871892 T C 5441.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.852 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5470,564,0 17 33464864 rs7215209 C T 3001.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3030,305,0 17 33469279 rs1471615 G C 6223.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=2.049 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6252,588,0 17 33513591 rs3744365 A C 2178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.637;SOR=0.51 GT:AD:DP:GQ:PL 0/1:83,85:168:99:2207,0,2174 17 33592591 rs11651240 C T 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.23;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.372;SOR=0.513 GT:AD:DP:GQ:PL 0/1:117,101:218:99:2346,0,2866 17 33680807 rs9897352 G A 1091.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.638;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.11;MQRankSum=-1.005;QD=19.15;ReadPosRankSum=1.339;SOR=1.047 GT:AD:DP:GQ:PL 0/1:24,33:57:99:1120,0,732 17 33680840 rs28571667 T C 3690.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.33;QD=33.86;SOR=2.036 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3719,327,0 17 33689926 rs4796077 T C 6912.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6941,663,0 17 33690466 rs12453150 C A 1804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.473;SOR=0.786 GT:AD:DP:GQ:PL 0/1:95,74:169:99:1833,0,2466 17 33749546 rs2586514 A G 5763.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5792,556,0 17 33749919 rs1849733 A C 5397.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5426,540,0 17 33768937 rs114866073 C T 1078.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=6.101;MLEAC=1;MLEAF=0.5;MQ=33.36;MQRankSum=2.285;QD=4.03;ReadPosRankSum=1.002;SOR=1.186 GT:AD:DP:GQ:PL 0/1:208,60:268:99:1107,0,5367 17 33769034 rs62078110 G A 1408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0;DB;DP=560;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=41.03;MQRankSum=-6.143;QD=2.52;ReadPosRankSum=0.557;SOR=0.937 GT:AD:DP:GQ:PL 0/1:440,120:560:99:1437,0,10351 17 33770802 rs10512469 C T 1039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.359;SOR=0.316 GT:AD:DP:GQ:PL 0/1:44,49:93:99:1068,0,1066 17 33772658 rs8072510 G T 2381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.841;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=1.211;SOR=0.533 GT:AD:DP:GQ:PL 0/1:87,102:189:99:2410,0,2192 17 33772689 rs12943866 T C 1623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.362;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=1.909;SOR=0.626 GT:AD:DP:GQ:PL 0/1:74,61:135:99:1652,0,1922 17 33805150 rs2304968 T C 3783.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3812,395,0 17 33814735 rs10626701 G GAA 3516.73 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,79:79:99:3554,238,0 17 33814758 rs4796089 T C 2382.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2411,248,0 17 33881631 rs321612 T C 4129.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4158,443,0 17 33881718 rs321613 G A 4494.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.62;SOR=0.981 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,108:108:99:1|1:33881718_G_A:4523,325,0 17 33881734 rs321614 A G 4017.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=0.99 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,90:90:99:1|1:33881718_G_A:4046,277,0 17 33998802 rs1049379 G C 4838.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=30.24;SOR=0.881 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4867,479,0 17 34072555 rs3744374 G A 2703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=9.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.874;SOR=1.092 GT:AD:DP:GQ:PL 0/1:104,111:215:99:2732,0,2642 17 34077232 rs11654604 G A 2888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.721;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-1.65;SOR=0.612 GT:AD:DP:GQ:PL 0/1:133,127:260:99:2917,0,3462 17 34100350 rs58543174 G GC 9215.73 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.56;QD=39.72;SOR=1.144 GT:AD:DP:GQ:PL 1/1:0,232:232:99:9253,701,0 17 34171710 . CGGCTATGGAGGAGACCGAGGAGGT C 6253.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.91;ClippingRankSum=0;DP=417;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.095;QD=16.54;ReadPosRankSum=0.496;SOR=0.76 GT:AD:DP:GQ:PL 0/1:207,171:378:99:6291,0,8244 17 34304605 rs79254649 C A 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.75;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.287;SOR=0.563 GT:AD:DP:GQ:PL 0/1:72,71:143:99:1735,0,1791 17 34304680 rs74842203 C T 1836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.216;SOR=0.693 GT:AD:DP:GQ:PL 0/1:88,80:168:99:1865,0,2252 17 34328461 rs854625 A G 7638.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7667,720,0 17 34340284 rs1003645 C T 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.655;SOR=0.652 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1585,0,1647 17 34431287 rs1049750 G T 4248.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.9;QD=29.3;SOR=1.422 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4277,435,0 17 34431961 rs1719146 T C 3196.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.81;QD=31.34;SOR=1.454 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3225,305,0 17 34539235 rs200975376 G A 600.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.919;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.51;MQRankSum=0.556;QD=13.65;ReadPosRankSum=-0.393;SOR=0.99 GT:AD:DP:GQ:PL 0/1:19,25:44:99:629,0,448 17 34746953 rs201664885 A C 13959.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.84;QD=25.15;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,555:555:99:13988,1662,0 17 34798001 . C T 144.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.829;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=22.07;MQRankSum=2.047;QD=1.79;ReadPosRankSum=-0.886;SOR=0.064 GT:AD:DP:GQ:PL 0/1:65,16:81:99:173,0,1495 17 34853433 . CT C 59.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.019;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.79;ReadPosRankSum=-0.34;SOR=0.607 GT:AD:DP:GQ:PL 0/1:61,15:82:97:97,0,1394 17 34854280 rs2306590 G A 2263.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=5.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.403;SOR=1.059 GT:AD:DP:GQ:PL 0/1:117,91:208:99:2292,0,3133 17 35378217 rs2301686 C A 1144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.497;SOR=0.653 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1173,0,1021 17 35478362 rs1470452 T C 4160.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.11;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4189,443,0 17 35743010 rs1714987 C G 2970.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2999,314,0 17 35771468 rs7211875 C T 3302.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=28.72;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3331,345,0 17 35902225 rs3110623 C G 7819.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7848,726,0 17 35956263 rs4795207 T C 3744.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.56;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3773,345,0 17 35984410 rs7216445 T C 1317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.346;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-1.738;SOR=0.745 GT:AD:DP:GQ:PL 0/1:46,58:104:99:1346,0,979 17 35988672 rs7224513 C T 1119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.933;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.95;QD=11.79;ReadPosRankSum=0.922;SOR=0.623 GT:AD:DP:GQ:PL 0/1:44,51:95:99:1148,0,1077 17 35988718 . TA T 89.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.613;QD=1.83;ReadPosRankSum=-0.738;SOR=0.412 GT:AD:DP:GQ:PL 0/1:37,12:52:99:127,0,922 17 36003359 rs3813910 A G 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.688;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-0.917;SOR=0.676 GT:AD:DP:GQ:PL 0/1:117,98:215:99:2150,0,2600 17 36047275 rs1800929 C T 3255.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3284,357,0 17 36339584 rs370901010 G T 111.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.047;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.63;MQRankSum=0.327;QD=1.38;ReadPosRankSum=0.948;SOR=0.023 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,10:81:99:0|1:36339584_G_T:140,0,2908 17 36339597 rs373252714 G T 2078.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.946;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.85;MQRankSum=-0.124;QD=19.25;ReadPosRankSum=-0.613;SOR=1.462 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,70:108:99:1|0:36339584_G_T:2107,0,1298 17 36552190 rs55687042 A G 1056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.699;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=-0.849;SOR=0.691 GT:AD:DP:GQ:PL 0/1:71,48:119:99:1085,0,1605 17 36614524 rs16965349 G A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=4.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.679;SOR=1.037 GT:AD:DP:GQ:PL 0/1:102,81:183:99:2038,0,2874 17 36635721 rs7405920 C T 3964.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.36;QD=27.73;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3993,427,0 17 36638388 rs11867891 A G 3271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.5;MQ=59.64;MQRankSum=-2.429;QD=13.09;ReadPosRankSum=-1.889;SOR=0.786 GT:AD:DP:GQ:PL 0/1:113,137:250:99:3300,0,2589 17 36646386 rs9891156 A G 5742.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5771,573,0 17 36646726 rs117469511 C T 557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.479;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=5.933;MLEAC=1;MLEAF=0.5;MQ=49.97;MQRankSum=-7.401;QD=4.01;ReadPosRankSum=3.661;SOR=0.321 GT:AD:DP:GQ:PL 0/1:98,41:139:99:586,0,2857 17 36666551 rs62074752 T C 8944.77 PASS AC=2;AF=1;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,302:302:99:8973,905,0 17 36667022 rs15537 C T 2851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-0.068;SOR=0.812 GT:AD:DP:GQ:PL 0/1:103,115:218:99:2880,0,2741 17 36830562 rs79676758 G C 2552.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.199;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.002;SOR=0.873 GT:AD:DP:GQ:PL 0/1:101,92:193:99:2581,0,3120 17 36861983 rs17855918 T C 2833.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2862,294,0 17 36889559 rs2879097 C T 1969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.9;QD=10.76;ReadPosRankSum=0.505;SOR=0.522 GT:AD:DP:GQ:PL 0/1:100,83:183:99:1998,0,2599 17 36894839 rs1138349 G A 1194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.233;SOR=0.679 GT:AD:DP:GQ:PL 0/1:73,55:128:99:1223,0,1921 17 36909061 rs228274 A G 3865.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3894,392,0 17 37054772 rs1130638 C T 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=-0.82;SOR=0.807 GT:AD:DP:GQ:PL 0/1:63,44:107:99:941,0,1539 17 37070658 rs525989 A G 8363.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8392,860,0 17 37070737 rs525767 A G 7140.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7169,708,0 17 37093510 rs113358400 T C 646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.169;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=4.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.37;ReadPosRankSum=-0.913;SOR=1.483 GT:AD:DP:GQ:PL 0/1:23,22:45:99:675,0,569 17 37101380 rs9906595 T C 2691.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.584 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2720,270,0 17 37427114 rs56193704 TA T 363.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=0;QD=9.09;ReadPosRankSum=0.749;SOR=0.749 GT:AD:DP:GQ:PL 0/1:13,27:42:99:401,0,216 17 37814080 rs1877031 G A 2839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.66;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.559;SOR=0.606 GT:AD:DP:GQ:PL 0/1:116,119:235:99:2868,0,2901 17 37822311 rs1053651 A C 3212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.856;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=0.267;SOR=0.697 GT:AD:DP:GQ:PL 0/1:149,141:290:99:3241,0,3401 17 37829129 rs2247862 A G 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=2.309;SOR=0.691 GT:AD:DP:GQ:PL 0/1:70,53:123:99:1279,0,1794 17 37830900 rs2941504 A G 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.616;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=6.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.07;ReadPosRankSum=0.613;SOR=1.192 GT:AD:DP:GQ:PL 0/1:66,71:137:99:1956,0,1660 17 37855834 rs4252596 C A 765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.217;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.562;SOR=0.834 GT:AD:DP:GQ:PL 0/1:41,35:76:99:794,0,896 17 37868715 rs4252627 C T 1193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.575;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=1.466;SOR=0.588 GT:AD:DP:GQ:PL 0/1:81,53:134:99:1222,0,2086 17 37884037 rs1058808 C G 2410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.44;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.44;ReadPosRankSum=0.692;SOR=0.565 GT:AD:DP:GQ:PL 0/1:70,97:167:99:2439,0,1846 17 37898543 rs2952142 T C 4104.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.1;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4133,372,0 17 37898722 rs8192704 G A 1013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.23;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=-1.258;SOR=0.963 GT:AD:DP:GQ:PL 0/1:82,48:130:99:1042,0,2244 17 38100673 rs72832968 C G 3266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.639;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=0.282;SOR=0.667 GT:AD:DP:GQ:PL 0/1:147,139:286:99:3295,0,3969 17 38121993 rs3894194 G A 3430.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.188 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3459,345,0 17 38122099 rs149553751 C T 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=-1.041;SOR=0.783 GT:AD:DP:GQ:PL 0/1:99,67:166:99:1398,0,2347 17 38126911 rs150060808 AACACACAC A,AAC 3040.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=42.23;SOR=1.609 GT:AD:DP:GQ:PL 1/2:0,33,39:82:99:3078,1375,1184,1233,0,1033 17 38131187 rs56030650 C A 697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.58;ReadPosRankSum=-1.952;SOR=0.976 GT:AD:DP:GQ:PL 0/1:58,34:92:99:726,0,1476 17 38137364 rs3087852 G A 4861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0;DB;DP=422;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-2.063;SOR=0.737 GT:AD:DP:GQ:PL 0/1:205,214:419:99:4890,0,5139 17 38142978 rs3859188 C T 2321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.502;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.824;SOR=0.804 GT:AD:DP:GQ:PL 0/1:105,102:207:99:2350,0,2763 17 38145088 rs9915252 C G 6248.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6277,597,0 17 38146154 rs9916279 T C 1894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.187;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=1.851;SOR=0.615 GT:AD:DP:GQ:PL 0/1:102,78:180:99:1923,0,2680 17 38173143 rs25645 G A 2378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.78;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.144;SOR=0.657 GT:AD:DP:GQ:PL 0/1:116,100:216:99:2407,0,2985 17 38175866 rs11555254 G A 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=4.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-1.027;SOR=0.566 GT:AD:DP:GQ:PL 0/1:76,77:153:99:1976,0,1959 17 38179492 rs2302777 A G 2951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.598;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.636;SOR=0.756 GT:AD:DP:GQ:PL 0/1:134,115:249:99:2980,0,3226 17 38179667 rs2302778 A G 1629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.992;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-2.082;SOR=0.67 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1658,0,1550 17 38183090 rs2302774 G T 2827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.257;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.322;SOR=0.896 GT:AD:DP:GQ:PL 0/1:100,117:217:99:2856,0,2661 17 38186106 rs11555255 C T 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.041;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.06;SOR=0.845 GT:AD:DP:GQ:PL 0/1:82,65:149:99:1537,0,1857 17 38288267 . TTCTC T 1138.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.386;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.136;QD=16.5;ReadPosRankSum=-0.666;SOR=1.159 GT:AD:DP:GQ:PL 0/1:38,31:69:99:1176,0,1968 17 38508756 rs41283421 C T 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.392;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.355;SOR=0.821 GT:AD:DP:GQ:PL 0/1:120,90:210:99:2038,0,2743 17 38519291 rs502041 C G 3536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-0.065;SOR=0.589 GT:AD:DP:GQ:PL 0/1:125,142:267:99:3565,0,3141 17 38519779 rs201734530 T A 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.801;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=2.23;SOR=0.937 GT:AD:DP:GQ:PL 0/1:135,115:250:99:2621,0,2988 17 38556770 rs471692 T C 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.097;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=5.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.17;ReadPosRankSum=-0.737;SOR=0.537 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1490,0,1396 17 38600092 rs598892 G A 4272.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4301,456,0 17 38855772 rs2462961 T C 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.31;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-1.655;SOR=0.599 GT:AD:DP:GQ:PL 0/1:66,70:136:99:1689,0,1538 17 38857446 rs874889 C A 1287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=-1.979;SOR=0.81 GT:AD:DP:GQ:PL 0/1:87,61:148:99:1316,0,2138 17 38858134 rs11309872 CA C 1151.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.21;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.2;ReadPosRankSum=1.351;SOR=0.811 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,34:60:99:1|0:38858110_T_A:1189,0,878 17 38911212 rs12951078 G A 6881.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.868 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6910,698,0 17 38911363 rs12951399 G A 5964.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5993,595,0 17 38935812 rs981684 A G 7078.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.087 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7107,693,0 17 38936659 rs17558560 C T 3543.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.69;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3572,384,0 17 38950272 rs2250671 T C 3324.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.12;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.5;MQ=59.28;MQRankSum=-0.447;QD=10.29;ReadPosRankSum=0.001;SOR=0.642 GT:AD:DP:GQ:PL 0/1:176,147:323:99:3353,0,4144 17 38953540 rs3813038 A G 2475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.101;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.5;ReadPosRankSum=-0.8;SOR=1.033 GT:AD:DP:GQ:PL 0/1:102,96:198:99:2504,0,2543 17 38955961 rs4624233 G A 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.372;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.18;ReadPosRankSum=-0.462;SOR=0.737 GT:AD:DP:GQ:PL 0/1:109,64:173:99:1444,0,2637 17 38975103 rs11275186 A AGCTGCCGCCGCCGTATCCGCCGCCGGAGCT 4259.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.51;ReadPosRankSum=0.384;SOR=0.707 GT:AD:DP:GQ:PL 0/1:164,94:258:99:4297,0,7967 17 38975307 . TGCCGCCGTGGCC T 8271.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DP=607;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=4.887;QD=15.12;ReadPosRankSum=3.826;SOR=0.803 GT:AD:DP:GQ:PL 0/1:321,226:547:99:8309,0,9173 17 38975328 rs17855579 G A 5483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0;DB;DP=600;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=-3.164;QD=9.6;ReadPosRankSum=3.689;SOR=0.681 GT:AD:DP:GQ:PL 0/1:329,242:571:99:5512,0,9088 17 38978536 rs4261597 A C 9042.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,290:290:99:9071,867,0 17 38990834 rs2240078 G C 6238.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6267,629,0 17 38991003 rs10558 T C 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.013;SOR=0.872 GT:AD:DP:GQ:PL 0/1:113,97:210:99:2432,0,2763 17 38991032 rs6694 T A 2427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=3.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.219;SOR=0.664 GT:AD:DP:GQ:PL 0/1:107,97:204:99:2456,0,2818 17 39023396 rs11650915 G A 1960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.543;SOR=0.919 GT:AD:DP:GQ:PL 0/1:114,89:203:99:1989,0,2615 17 39032651 rs113823624 C T 559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=0.875;SOR=0.627 GT:AD:DP:GQ:PL 0/1:37,29:66:99:588,0,942 17 39081713 rs8037 A G 2353.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.915;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.497;SOR=0.654 GT:AD:DP:GQ:PL 0/1:91,102:193:99:2382,0,1919 17 39084504 rs9257 T C 2264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.678;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-1.327;SOR=0.952 GT:AD:DP:GQ:PL 0/1:97,91:188:99:2293,0,2432 17 39116728 rs17843021 G A 1413.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.441;SOR=0.426 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1442,0,1426 17 39123013 rs17645930 G A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=-0.442;SOR=0.83 GT:AD:DP:GQ:PL 0/1:71,84:155:99:2038,0,1670 17 39134455 rs2271277 G A 711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.331;QD=7.49;ReadPosRankSum=0.446;SOR=0.706 GT:AD:DP:GQ:PL 0/1:60,35:95:99:740,0,1560 17 39134561 rs2271278 C T 541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.038;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=-0.038;SOR=0.867 GT:AD:DP:GQ:PL 0/1:42,26:68:99:570,0,955 17 39135084 rs8064733 A G 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=4.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.66;ReadPosRankSum=0.237;SOR=0.363 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,56:120:99:0|1:39135084_A_G:2148,0,3637 17 39135089 rs11649834 G A 2150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.258;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.07;ReadPosRankSum=0.543;SOR=0.473 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,58:126:99:0|1:39135084_A_G:2179,0,3721 17 39135205 rs8064910 A G 2853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.49;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=2.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.15;ReadPosRankSum=-0.309;SOR=0.515 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,75:149:99:0|1:39135205_A_G:2882,0,3545 17 39135214 rs8068970 T C 2681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.89;ReadPosRankSum=-0.303;SOR=0.416 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,70:142:99:0|1:39135205_A_G:2710,0,3491 17 39137104 rs9908389 A G 2341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.422;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.448;SOR=0.727 GT:AD:DP:GQ:PL 0/1:88,96:184:99:2370,0,2063 17 39137154 rs721958 C G 2297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.07;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=4.986;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.433;SOR=0.601 GT:AD:DP:GQ:PL 0/1:99,96:195:99:2326,0,2802 17 39137297 rs721957 C T 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.343;SOR=0.724 GT:AD:DP:GQ:PL 0/1:83,88:171:99:2204,0,2167 17 39137387 rs2010027 C T 2708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=-0.429;SOR=0.776 GT:AD:DP:GQ:PL 0/1:83,114:197:99:2737,0,1836 17 39138712 rs4243257 G A 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=5.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.4;ReadPosRankSum=-0.481;SOR=0.336 GT:AD:DP:GQ:PL 0/1:42,58:100:99:1468,0,1056 17 39139279 rs35072663 A T 769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.49;ReadPosRankSum=1.287;SOR=0.429 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,21:44:99:0|1:39139256_A_T:798,0,1029 17 39139370 rs9908304 G A 430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.43;ReadPosRankSum=0.789;SOR=0.65 GT:AD:DP:GQ:PL 0/1:36,22:58:99:459,0,909 17 39140221 rs1510068 C T 2169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-1.047;SOR=0.727 GT:AD:DP:GQ:PL 0/1:120,95:215:99:2198,0,3097 17 39140417 rs1510069 T C 2378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=0.764;SOR=0.46 GT:AD:DP:GQ:PL 0/1:64,99:163:99:2407,0,1290 17 39150167 rs12452295 G A 4532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0;DB;DP=495;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=57.4;MQRankSum=0.917;QD=9.18;ReadPosRankSum=-1.489;SOR=0.787 GT:AD:DP:GQ:PL 0/1:282,212:494:99:4561,0,6770 17 39190954 rs71300033 G GCAGCAGCTTGGCTGGCAGCAGCTGGTCTCA 5355.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.762;ClippingRankSum=0;DB;DP=460;ExcessHet=3.0103;FS=5.469;MLEAC=1;MLEAF=0.5;MQ=58.73;MQRankSum=-8.49;QD=22.69;ReadPosRankSum=3.073;SOR=1.031 GT:AD:DP:GQ:PL 0/1:144,92:236:99:5393,0,6790 17 39197538 rs146863522 G T 1044.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.453;ClippingRankSum=0;DB;DP=493;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.5;MQ=58.81;MQRankSum=-18.453;QD=2.12;ReadPosRankSum=4.82;SOR=0.552 GT:AD:DP:GQ:PGT:PID:PL 0/1:436,57:493:99:0|1:39197538_G_T:1073,0,21542 17 39197549 . G C 1215.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.62;ClippingRankSum=0;DP=490;ExcessHet=3.0103;FS=5.797;MLEAC=1;MLEAF=0.5;MQ=58.81;MQRankSum=-14.069;QD=2.48;ReadPosRankSum=-2.013;SOR=0.455 GT:AD:DP:GQ:PGT:PID:PL 0/1:400,90:490:99:0|1:39197538_G_T:1244,0,20552 17 39197593 rs145621540 G T 938.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.474;ClippingRankSum=0;DB;DP=404;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.5;MQ=58.59;MQRankSum=-16.911;QD=2.32;ReadPosRankSum=-3.106;SOR=0.476 GT:AD:DP:GQ:PGT:PID:PL 0/1:350,54:404:99:0|1:39197593_G_T:967,0,17795 17 39197618 . A T 152.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.376;ClippingRankSum=0;DP=289;ExcessHet=3.0103;FS=7.441;MLEAC=1;MLEAF=0.5;MQ=58.94;MQRankSum=-15.768;QD=0.53;ReadPosRankSum=-4.662;SOR=0.244 GT:AD:DP:GQ:PGT:PID:PL 0/1:265,24:289:99:0|1:39197593_G_T:181,0,16284 17 39240504 rs11655310 A G 10096.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0;DB;DP=420;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.5;MQ=57.46;MQRankSum=-8.213;QD=24.04;ReadPosRankSum=-0.047;SOR=0.606 GT:AD:DP:GQ:PL 0/1:166,254:420:99:10125,0,6191 17 39240511 rs383835 A T 9624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.28;ClippingRankSum=0;DB;DP=449;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.5;MQ=57.72;MQRankSum=-5.938;QD=21.44;ReadPosRankSum=2.1;SOR=0.755 GT:AD:DP:GQ:PL 0/1:193,256:449:99:9653,0,7175 17 39240661 rs11650484 C G 8592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.336;ClippingRankSum=0;DB;DP=638;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=58.92;MQRankSum=-3.748;QD=13.51;ReadPosRankSum=0.233;SOR=0.755 GT:AD:DP:GQ:PL 0/1:309,327:636:99:8621,0,7626 17 39253815 rs77163010 G A 6499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.609;ClippingRankSum=0;DB;DP=448;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.03;MQRankSum=-12.188;QD=14.61;ReadPosRankSum=1.517;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:264,181:445:99:0|1:39253815_G_A:6528,0,10317 17 39253835 rs72625995 C T 6081.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0;DB;DP=461;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=56.8;MQRankSum=-12.556;QD=13.28;ReadPosRankSum=3.318;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:292,166:458:99:0|1:39253815_G_A:6110,0,11246 17 39253886 rs78550130 G C 3449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.168;ClippingRankSum=0;DB;DP=471;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.86;MQRankSum=-12.404;QD=7.37;ReadPosRankSum=-1.993;SOR=0.709 GT:AD:DP:GQ:PL 0/1:323,145:468:99:3478,0,8481 17 39253956 rs139720993 G A 6055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0;DB;DP=479;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.5;MQ=52.97;MQRankSum=-4.967;QD=12.67;ReadPosRankSum=-0.351;SOR=0.814 GT:AD:DP:GQ:PGT:PID:PL 0/1:312,166:478:99:0|1:39253956_G_A:6084,0,20238 17 39253960 rs144672535 C T 6350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.135;ClippingRankSum=0;DB;DP=478;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.5;MQ=53.07;MQRankSum=-4.494;QD=13.29;ReadPosRankSum=0.864;SOR=0.838 GT:AD:DP:GQ:PGT:PID:PL 0/1:310,168:478:99:0|1:39253956_G_A:6379,0,20595 17 39253969 rs147906218 T G 6890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.134;ClippingRankSum=0;DB;DP=515;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.5;MQ=53.74;MQRankSum=-2.854;QD=13.38;ReadPosRankSum=0.474;SOR=0.919 GT:AD:DP:GQ:PGT:PID:PL 0/1:317,198:515:99:0|1:39253956_G_A:6919,0,20144 17 39254142 rs375280428 A G 171.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.092;ClippingRankSum=0;DB;DP=636;ExcessHet=3.0103;FS=8.481;MLEAC=1;MLEAF=0.5;MQ=59.01;MQRankSum=-2.946;QD=0.41;ReadPosRankSum=-7.356;SOR=1.164 GT:AD:DP:GQ:PL 0/1:360,55:415:99:200,0,9695 17 39254335 rs201764113 A AT 3512.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.91;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.144;QD=13.11;ReadPosRankSum=0.646;SOR=0.488 GT:AD:DP:GQ:PL 0/1:151,117:268:99:3550,0,4793 17 39261933 rs7207685 C T 9548.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0;DB;DP=528;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.5;MQ=56.66;MQRankSum=-13.722;QD=18.15;ReadPosRankSum=-2.264;SOR=0.548 GT:AD:DP:GQ:PGT:PID:PL 0/1:273,253:526:99:0|1:39261933_C_T:9577,0,12731 17 39261949 rs7212474 T C 9763.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.963;ClippingRankSum=0;DB;DP=528;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=56.67;MQRankSum=-13.267;QD=18.53;ReadPosRankSum=-1.181;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:265,262:527:99:0|1:39261933_C_T:9792,0,12601 17 39274069 rs349771 G C 7700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.59;ClippingRankSum=0;DB;DP=661;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.5;MQ=54.21;MQRankSum=0.407;QD=11.65;ReadPosRankSum=-0.219;SOR=0.607 GT:AD:DP:GQ:PL 0/1:343,318:661:99:7729,0,9215 17 39274235 rs11654403 G A 7615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.607;ClippingRankSum=0;DB;DP=685;ExcessHet=3.0103;FS=1.09;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.321;QD=11.23;ReadPosRankSum=1.168;SOR=0.62 GT:AD:DP:GQ:PL 0/1:340,338:681:99:7644,0,8697 17 39274518 rs9897031 C T 5160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.073;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=1.281;SOR=0.704 GT:AD:DP:GQ:PL 0/1:183,197:380:99:5189,0,4764 17 39296152 . A G 1033.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.951;ClippingRankSum=0;DP=541;ExcessHet=3.0103;FS=8.46;MLEAC=1;MLEAF=0.5;MQ=58.96;MQRankSum=-18.065;QD=1.91;ReadPosRankSum=-5.899;SOR=1.59 GT:AD:DP:GQ:PGT:PID:PL 0/1:484,57:541:99:0|1:39296152_A_G:1062,0,31902 17 39296158 . G A 1553.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.698;ClippingRankSum=0;DP=571;ExcessHet=3.0103;FS=7.313;MLEAC=1;MLEAF=0.5;MQ=58.98;MQRankSum=-16.664;QD=2.72;ReadPosRankSum=-6.193;SOR=1.501 GT:AD:DP:GQ:PGT:PID:PL 0/1:500,71:571:99:0|1:39296152_A_G:1582,0,32964 17 39296167 . A G 2339.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.044;ClippingRankSum=0;DP=653;ExcessHet=3.0103;FS=2.614;MLEAC=1;MLEAF=0.5;MQ=59.1;MQRankSum=-14.491;QD=3.58;ReadPosRankSum=-6.413;SOR=1.068 GT:AD:DP:GQ:PGT:PID:PL 0/1:548,105:653:99:0|1:39296152_A_G:2368,0,33709 17 39296254 rs72483263 C T 6238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0;DB;DP=1084;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.5;MQ=59.38;MQRankSum=-10.246;QD=5.78;ReadPosRankSum=2.553;SOR=0.822 GT:AD:DP:GQ:PL 0/1:761,319:1080:99:6267,0,20140 17 39305775 rs58117746 T TGGCAGCAGCTGGGGC 7376.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.154;ClippingRankSum=0;DB;DP=808;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=62.2;MQRankSum=12.23;QD=10.99;ReadPosRankSum=6.516;SOR=0.744 GT:AD:DP:GQ:PL 0/1:377,294:673:99:7414,0,13242 17 39305956 rs1497383 G A 5288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.776;ClippingRankSum=0;DB;DP=508;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=-0.079;SOR=0.94 GT:AD:DP:GQ:PL 0/1:282,222:504:99:5317,0,6874 17 39334133 rs389784 T C 25185.8 PASS AC=2;AF=1;AN=2;DB;DP=777;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=32.41;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,777:777:99:25214,2328,0 17 39334241 rs62067292 G C 10071.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.463;ClippingRankSum=0;DB;DP=795;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=2.436;QD=12.7;ReadPosRankSum=0.695;SOR=0.682 GT:AD:DP:GQ:PL 0/1:405,388:793:99:10100,0,10268 17 39340707 rs398825 C T 10178.8 PASS AC=2;AF=1;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;QD=28.43;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,358:358:99:10207,1070,0 17 39340795 rs71155126 ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG A 12905.7 PASS AC=2;AF=1;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.12;QD=36.15;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,357:357:99:1|1:39340795_ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG_A:12943,1048,0 17 39340910 rs2320231 T C 10078.8 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.54;QD=40.48;SOR=0.913 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,249:249:99:1|1:39340795_ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG_A:10107,763,0 17 39346139 rs61743546 A G 4187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=4.656;MLEAC=1;MLEAF=0.5;MQ=59.81;MQRankSum=-1.035;QD=12.43;ReadPosRankSum=1.146;SOR=0.484 GT:AD:DP:GQ:PL 0/1:171,166:337:99:4216,0,4396 17 39346518 rs238824 T C 10671.8 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.33;QD=32.94;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,324:326:99:10700,972,0 17 39346595 rs11283848 T TGCTGTGGGTCCAGCTGCTGCCAGCCTA 9860.73 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=47.18;SOR=1.587 GT:AD:DP:GQ:PL 1/1:0,209:209:99:9898,655,0 17 39382942 rs11078986 C A 6463.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.684;ClippingRankSum=0;DB;DP=741;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.5;MQ=52.48;MQRankSum=-20.964;QD=8.72;ReadPosRankSum=-3.829;SOR=0.582 GT:AD:DP:GQ:PL 0/1:469,272:741:99:6492,0,11389 17 39383012 rs9903833 C T 7568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=788;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.5;MQ=55.36;MQRankSum=-12.201;QD=9.61;ReadPosRankSum=5.556;SOR=0.602 GT:AD:DP:GQ:PL 0/1:457,331:788:99:7597,0,10017 17 39383073 rs9902235 G C 8344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0;DB;DP=653;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.5;MQ=57.98;MQRankSum=-3.599;QD=12.78;ReadPosRankSum=3.091;SOR=0.72 GT:AD:DP:GQ:PL 0/1:347,306:653:99:8373,0,8588 17 39383335 rs238787 C G 11388.8 PASS AC=2;AF=1;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.41;QD=30.53;SOR=1.124 GT:AD:DP:GQ:PL 1/1:0,373:374:99:11417,1119,0 17 39388811 rs112082369 C A 6463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.518;ClippingRankSum=0;DB;DP=608;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.5;MQ=53.76;MQRankSum=-10.496;QD=10.65;ReadPosRankSum=-2.55;SOR=0.9 GT:AD:DP:GQ:PL 0/1:342,265:607:99:6492,0,8573 17 39388852 rs1860551 T C 18926.8 PASS AC=2;AF=1;AN=2;DB;DP=571;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.16;QD=33.32;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,568:570:99:18955,1704,0 17 39394674 rs71383390 A G 5103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.56;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=2.23;MLEAC=1;MLEAF=0.5;MQ=46.97;MQRankSum=-2.032;QD=13.5;ReadPosRankSum=0.607;SOR=0.572 GT:AD:DP:GQ:PL 0/1:180,198:378:99:5132,0,4277 17 39394729 rs146488039 C A 3435.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.708;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=36.71;MQRankSum=-1.966;QD=13.42;ReadPosRankSum=0.59;SOR=0.632 GT:AD:DP:GQ:PL 0/1:116,140:256:99:3464,0,3125 17 39394755 rs141050869 C A 2569.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.223;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.36;MQRankSum=-0.69;QD=14.28;ReadPosRankSum=0.554;SOR=0.63 GT:AD:DP:GQ:PL 0/1:83,97:180:99:2598,0,2349 17 39394787 rs201305440 C A 2319.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.31;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.58;MQRankSum=-1.179;QD=19.83;ReadPosRankSum=-0.723;SOR=0.745 GT:AD:DP:GQ:PGT:PID:PL 0/1:57,60:117:99:0|1:39394787_C_A:2348,0,2818 17 39394790 rs202037613 T C 2355.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.773;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=34.69;MQRankSum=-1.391;QD=20.48;ReadPosRankSum=-1.292;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 0/1:55,60:115:99:0|1:39394787_C_A:2384,0,2815 17 39405960 rs11655750 T C 4666.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.009;ClippingRankSum=0;DB;DP=406;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.5;MQ=50.49;MQRankSum=-17.658;QD=11.49;ReadPosRankSum=-1.69;SOR=0.872 GT:AD:DP:GQ:PL 0/1:218,188:406:99:4695,0,5509 17 39406104 rs11655843 T G 8661.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.642;ClippingRankSum=0;DB;DP=644;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.03;MQRankSum=-19.33;QD=13.47;ReadPosRankSum=-2.257;SOR=0.698 GT:AD:DP:GQ:PL 0/1:320,323:643:99:8690,0,8014 17 39406409 rs2191379 C A 4852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.27;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.4;QD=11.23;ReadPosRankSum=-1.269;SOR=0.761 GT:AD:DP:GQ:PL 0/1:219,213:432:99:4881,0,5529 17 39406447 rs3967754 A G 3778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.169;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.5;MQ=59.71;MQRankSum=-2.1;QD=11.85;ReadPosRankSum=0.602;SOR=0.739 GT:AD:DP:GQ:PL 0/1:170,149:319:99:3807,0,4152 17 39411670 . T TACCTGCTGCAGGACC 621.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.095;ClippingRankSum=0;DP=348;ExcessHet=3.0103;FS=3.258;MLEAC=1;MLEAF=0.5;MQ=57.22;MQRankSum=-9.786;QD=2.14;ReadPosRankSum=-4.51;SOR=1.149 GT:AD:DP:GQ:PL 0/1:272,19:291:99:659,0,11968 17 39421781 rs12938374 A G 3489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.453;ClippingRankSum=0;DB;DP=465;ExcessHet=3.0103;FS=13.254;MLEAC=1;MLEAF=0.5;MQ=55.73;MQRankSum=-4.861;QD=7.54;ReadPosRankSum=-0.113;SOR=1.423 GT:AD:DP:GQ:PL 0/1:315,148:463:99:3518,0,8202 17 39421968 rs112809229 T C 9799.77 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=29.43;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,333:335:99:9828,997,0 17 39458476 rs1001191 A T 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.284;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=1.273;SOR=0.696 GT:AD:DP:GQ:PL 0/1:93,65:158:99:1669,0,2543 17 39458573 rs368037290 TGTACAGATGGTTG T 3112.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=4.19;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.151;QD=16.3;ReadPosRankSum=-0.411;SOR=0.986 GT:AD:DP:GQ:PL 0/1:108,83:191:99:3150,0,14823 17 39458765 rs1005197 A G 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.926;SOR=0.693 GT:AD:DP:GQ:PL 0/1:89,89:178:99:2246,0,2436 17 39458893 rs758741 G A 2728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.449;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-1.114;SOR=0.631 GT:AD:DP:GQ:PL 0/1:96,113:209:99:2757,0,2241 17 39464046 rs2074286 G C 2862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-1.306;SOR=0.952 GT:AD:DP:GQ:PL 0/1:113,119:232:99:2891,0,2799 17 39464487 rs2074285 G C 2590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.384;SOR=0.624 GT:AD:DP:GQ:PL 0/1:107,105:212:99:2619,0,2800 17 39464736 rs2074284 C G 2549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.897;SOR=0.717 GT:AD:DP:GQ:PL 0/1:131,104:235:99:2578,0,3584 17 39465094 rs12453338 C T 3109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=5.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.742;SOR=0.464 GT:AD:DP:GQ:PL 0/1:128,127:255:99:3138,0,3425 17 39465389 rs12451604 T A 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.475;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.513;SOR=0.655 GT:AD:DP:GQ:PL 0/1:104,104:208:99:2464,0,2359 17 39471752 rs72106118 TGCCCCCGCAGCCAGA T 4912.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.784;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.93;MQRankSum=6.2;QD=16.43;ReadPosRankSum=-0.499;SOR=0.72 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,133:299:99:0|1:39471752_TGCCCCCGCAGCCAGA_T:4950,0,7278 17 39471778 rs78413710 C T 5051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=61.02;MQRankSum=5.822;QD=17.07;ReadPosRankSum=0.319;SOR=0.747 GT:AD:DP:GQ:PGT:PID:PL 0/1:155,141:296:99:0|1:39471752_TGCCCCCGCAGCCAGA_T:5080,0,6951 17 39503163 rs12937519 G A 3869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.5;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=4.648;MLEAC=1;MLEAF=0.5;MQ=43.61;MQRankSum=-3.355;QD=10.52;ReadPosRankSum=0.691;SOR=0.936 GT:AD:DP:GQ:PL 0/1:204,164:368:99:3898,0,5188 17 39506659 rs16966713 G A 2621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.034;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-1.435;SOR=0.731 GT:AD:DP:GQ:PL 0/1:112,95:207:99:2650,0,3027 17 39535859 rs2239710 A G 5210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.399;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=3.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=1.797;SOR=0.886 GT:AD:DP:GQ:PL 0/1:168,199:367:99:5239,0,3842 17 39553811 rs6503629 G T 3185.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.174;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=90.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.82;ReadPosRankSum=0.393;SOR=1.417 GT:AD:DP:GQ:PL 0/1:37,116:153:99:3214,0,619 17 39578424 rs2071607 G T 3299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.5;MQ=56.93;MQRankSum=-6.646;QD=10.34;ReadPosRankSum=-0.091;SOR=0.641 GT:AD:DP:GQ:PL 0/1:183,136:319:99:3328,0,4901 17 39579010 rs116874025 C T 92.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.951;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=8.695;MLEAC=1;MLEAF=0.5;MQ=58.69;MQRankSum=-12.227;QD=0.61;ReadPosRankSum=-4.196;SOR=1.922 GT:AD:DP:GQ:PGT:PID:PL 0/1:139,12:151:99:0|1:39579010_C_T:121,0,6969 17 39579016 . A G 221.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.168;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.5;MQ=58.59;MQRankSum=-11.564;QD=1.4;ReadPosRankSum=-4.312;SOR=0.949 GT:AD:DP:GQ:PGT:PID:PL 0/1:143,15:158:99:0|1:39579010_C_T:250,0,7119 17 39579017 . G C 221.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DP=163;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.5;MQ=58.58;MQRankSum=-11.413;QD=1.36;ReadPosRankSum=-4.513;SOR=0.861 GT:AD:DP:GQ:PGT:PID:PL 0/1:146,17:163:99:0|1:39579010_C_T:250,0,7119 17 39579059 rs78158550 G A 1313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.959;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.5;MQ=58.97;MQRankSum=-6.627;QD=5.57;ReadPosRankSum=-3.186;SOR=0.991 GT:AD:DP:GQ:PL 0/1:170,66:236:99:1342,0,4494 17 39579112 rs16966811 G A 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=59.13;MQRankSum=-5.04;QD=8.84;ReadPosRankSum=2.189;SOR=0.677 GT:AD:DP:GQ:PL 0/1:167,111:278:99:2487,0,4208 17 39580559 rs9916475 T A 14134.8 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.16;SOR=0.895 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,313:313:99:1|1:39580559_T_A:14163,954,0 17 39580562 rs9916484 T C 14064.8 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.94;SOR=0.88 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,313:313:99:1|1:39580559_T_A:14093,948,0 17 39580660 rs9916724 T C 7297.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.92;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,209:209:99:7326,627,0 17 39580739 rs9910204 C A 2503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.923;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.854;SOR=0.532 GT:AD:DP:GQ:PL 0/1:111,103:214:99:2532,0,2642 17 39593768 rs897416 A G 6051.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.02;SOR=1.161 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6080,567,0 17 39594934 rs71155140 AC A 2582.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.292;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=6.06;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.116;QD=10.54;ReadPosRankSum=-0.535;SOR=0.856 GT:AD:DP:GQ:PL 0/1:135,110:245:99:2620,0,3364 17 39595116 rs9894668 G T 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.533;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.422;SOR=0.848 GT:AD:DP:GQ:PL 0/1:90,70:160:99:1770,0,2636 17 39595484 rs148768443 G A 707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.27;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=-6.668;QD=2.06;ReadPosRankSum=2.194;SOR=0.991 GT:AD:DP:GQ:PL 0/1:285,59:344:99:736,0,8014 17 39596402 rs2071610 G A 1467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.68;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=6.293;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=0.294;SOR=1.329 GT:AD:DP:GQ:PL 0/1:54,56:110:99:1496,0,1342 17 39616430 rs2604953 G T 6564.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6593,681,0 17 39619093 rs2604954 G A 6668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.56;ReadPosRankSum=0.678;SOR=0.598 GT:AD:DP:GQ:PGT:PID:PL 0/1:115,168:283:99:0|1:39619093_G_A:6697,0,5997 17 39619094 rs2604955 T C 6668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.91;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.56;ReadPosRankSum=0.662;SOR=0.598 GT:AD:DP:GQ:PGT:PID:PL 0/1:115,168:283:99:0|1:39619093_G_A:6697,0,5997 17 39619219 rs2857257 G A 4640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.022;SOR=0.829 GT:AD:DP:GQ:PL 0/1:162,203:365:99:4669,0,3735 17 39620565 rs72830046 C T 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.838;SOR=0.603 GT:AD:DP:GQ:PL 0/1:79,87:166:99:2192,0,1974 17 39622068 rs2071561 G T 4886.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4915,507,0 17 39623363 rs3744786 T C 2921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.026;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=3.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=0.029;SOR=0.649 GT:AD:DP:GQ:PL 0/1:94,109:203:99:2950,0,2387 17 39633317 rs2239711 A G 3972.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.66;ReadPosRankSum=0.554;SOR=0.792 GT:AD:DP:GQ:PL 1/1:2,147:149:99:4001,381,0 17 39633349 rs2071601 G C 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.888;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.037;SOR=0.756 GT:AD:DP:GQ:PL 0/1:77,86:163:99:2206,0,2994 17 39633354 rs12451652 C T 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=0.461;SOR=0.531 GT:AD:DP:GQ:PL 0/1:86,78:164:99:1768,0,3388 17 39634625 rs7216017 A G 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.343;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=2.392;SOR=0.733 GT:AD:DP:GQ:PL 0/1:82,67:149:99:1686,0,2112 17 39636044 rs2011243 G A 2044.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.56;SOR=1.079 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2073,230,0 17 39637244 rs743686 A G 2168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.067;SOR=0.728 GT:AD:DP:GQ:PL 0/1:89,95:184:99:2197,0,2044 17 39643646 rs2301354 G A 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.379;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.233;SOR=0.606 GT:AD:DP:GQ:PL 0/1:107,94:201:99:2296,0,2641 17 39646021 rs1003842 A G 7193.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=1.144 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7222,694,0 17 39659183 rs4796698 G A 5173.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5202,483,0 17 39659194 rs4796697 T C 5487.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5516,498,0 17 39659529 rs7211835 T C 4416.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.78;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4445,381,0 17 39659913 rs9891361 G A 2904.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=29.05;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2933,300,0 17 39661689 rs8182306 G A 8293.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8322,811,0 17 39670912 rs897420 G C 4239.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4268,442,0 17 39674641 rs1050784 T C 6402.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.52;SOR=1.041 GT:AD:DP:GQ:PL 1/1:0,191:191:99:6431,573,0 17 39680796 rs1869720 T A 3691.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=1.278 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3720,354,0 17 39681475 rs4601 A G 3476.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.97;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3505,360,0 17 39684321 rs4602 G C 10399.8 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.23;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,313:313:99:10428,939,0 17 39684410 rs11550883 G A 8443.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8472,816,0 17 39723990 rs3890472 T A 2887.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2916,302,0 17 39726276 rs3816510 C A 4624.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=1.037 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4653,438,0 17 39727816 rs8075921 T G 6811.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6840,662,0 17 39728050 rs8070680 G A 5760.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5789,568,0 17 39742718 rs3826549 A G 10408.8 PASS AC=2;AF=1;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.26;QD=31.07;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,335:335:99:10437,1004,0 17 39742894 rs3826551 G A 15237.8 PASS AC=2;AF=1;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=45.35;SOR=0.859 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,336:336:99:1|1:39742894_G_A:15266,1038,0 17 39742898 rs11551758 G A 15529.8 PASS AC=2;AF=1;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=45.41;SOR=0.883 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,342:342:99:1|1:39742894_G_A:15558,1059,0 17 39742899 rs6503640 C T 15440.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=45.02;SOR=0.889 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,343:343:99:1|1:39742894_G_A:15469,1053,0 17 39743081 rs11551759 G A 8099.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.61;QD=31.03;SOR=1.344 GT:AD:DP:GQ:PL 1/1:0,261:261:99:8128,780,0 17 39766504 rs7406899 A G 5573.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.82;QD=34.19;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5602,489,0 17 39767744 rs4796681 A G 5465.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.34;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5494,507,0 17 39871700 rs7220169 G A 2720.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2749,272,0 17 39881289 rs8075017 G C 5141.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5170,513,0 17 39883350 rs4523977 G A 597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=1.839;SOR=0.66 GT:AD:DP:GQ:PL 0/1:23,27:50:99:626,0,519 17 39884065 rs35612698 C A 606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=2.109;SOR=1.22 GT:AD:DP:GQ:PL 0/1:24,26:50:99:635,0,521 17 39884091 rs4796601 G C 1296.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1325,129,0 17 39884583 rs4796693 G A 3742.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=1.187 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3771,391,0 17 39890715 rs4796603 A T 3820.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3849,368,0 17 39890876 rs4796604 T C 1110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.922;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-0.696;SOR=0.682 GT:AD:DP:GQ:PL 0/1:44,41:85:99:1139,0,1145 17 39923614 rs12942034 A G 942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.943;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=0.316;SOR=0.683 GT:AD:DP:GQ:PL 0/1:54,39:93:99:971,0,1409 17 39925925 rs7405731 A G 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.875;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.13;SOR=0.528 GT:AD:DP:GQ:PL 0/1:92,73:165:99:1839,0,2340 17 39959189 rs1065029 C G 3480.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.07;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3509,371,0 17 39967442 rs13412 T C 3182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=2.014;SOR=0.592 GT:AD:DP:GQ:PL 0/1:165,135:300:99:3211,0,4189 17 39987130 rs4796712 T C 2224.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.13;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2253,245,0 17 39998141 rs1529933 C T 4952.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4981,486,0 17 40010979 rs3744782 G A 3941.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3970,377,0 17 40025285 rs9914829 A G 2544.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2573,246,0 17 40028450 rs8071627 A T 3989.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4018,393,0 17 40048613 rs8065502 A G 3707.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3736,393,0 17 40125864 rs2070106 G A 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.244;SOR=0.845 GT:AD:DP:GQ:PL 0/1:143,103:246:99:2513,0,3709 17 40146970 rs6503679 G A 2248.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2277,219,0 17 40257055 rs34016093 T C 4000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.225;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=0.647;SOR=0.572 GT:AD:DP:GQ:PL 0/1:125,153:278:99:4029,0,3084 17 40257163 rs2074158 T C 3611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-1.05;SOR=0.604 GT:AD:DP:GQ:PL 0/1:122,153:275:99:3640,0,2817 17 40259980 rs2074154 A T 2343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.168;SOR=0.577 GT:AD:DP:GQ:PL 0/1:119,106:225:99:2372,0,2904 17 40261284 rs1557744 G A 2113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=2.355;SOR=0.712 GT:AD:DP:GQ:PL 0/1:92,93:185:99:2142,0,2181 17 40270040 rs146062629 G GGA 1284.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.165;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.29;ReadPosRankSum=0.826;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,35:84:99:0|1:40270040_G_GGA:1322,0,2112 17 40270053 rs35478347 C A 1293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.4;ReadPosRankSum=0.263;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,35:84:99:0|1:40270040_G_GGA:1322,0,2112 17 40272406 rs35184688 G C 977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.534;SOR=0.874 GT:AD:DP:GQ:PL 0/1:49,41:90:99:1006,0,1233 17 40274873 rs1122326 A C 2050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=-0.744;SOR=0.591 GT:AD:DP:GQ:PL 0/1:66,87:153:99:2079,0,1519 17 40280291 rs2230326 G A 2775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.676;SOR=0.678 GT:AD:DP:GQ:PL 0/1:122,125:247:99:2804,0,2823 17 40370237 rs61749920 G T 4555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0;DB;DP=412;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.572;QD=11.19;ReadPosRankSum=1.23;SOR=0.623 GT:AD:DP:GQ:PL 0/1:204,203:407:99:4584,0,4895 17 40689455 rs659497 T C 8035.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8064,798,0 17 40696233 rs86312 C G 6242.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6271,620,0 17 40706906 rs605059 G A 2988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.536;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.595;SOR=0.762 GT:AD:DP:GQ:PL 0/1:125,119:244:99:3017,0,3068 17 40714804 rs615942 C A 2699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=5.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.606;SOR=1.04 GT:AD:DP:GQ:PL 0/1:121,112:233:99:2728,0,3222 17 40716520 rs598126 A G 1893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.868;SOR=0.493 GT:AD:DP:GQ:PL 0/1:87,85:172:99:1922,0,2121 17 40722162 rs1474040 G A 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=1.464;SOR=0.512 GT:AD:DP:GQ:PL 0/1:78,92:170:99:2175,0,1900 17 40725656 rs2292752 G C 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-1.251;SOR=0.621 GT:AD:DP:GQ:PL 0/1:70,74:144:99:1941,0,1862 17 40766546 rs1045710 C G 4304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.422;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.77;MQRankSum=-12.421;QD=10.42;ReadPosRankSum=-0.589;SOR=0.724 GT:AD:DP:GQ:PL 0/1:253,160:413:99:4333,0,6994 17 40811919 rs525911 A G 1238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.591;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=6.966;MLEAC=1;MLEAF=0.5;MQ=57.08;MQRankSum=-2.747;QD=6.84;ReadPosRankSum=-1.86;SOR=0.83 GT:AD:DP:GQ:PL 0/1:124,57:181:99:1267,0,2972 17 40818451 rs1554227 G A 5040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.922;ClippingRankSum=0;DB;DP=396;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.5;MQ=58.47;MQRankSum=0.119;QD=12.73;ReadPosRankSum=0.958;SOR=0.76 GT:AD:DP:GQ:PL 0/1:200,196:396:99:5069,0,4984 17 40818699 rs1046097 A G 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.198;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=0.275;SOR=0.816 GT:AD:DP:GQ:PL 0/1:95,106:201:99:2635,0,2300 17 40822308 rs8071056 C A 8007.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=1.001 GT:AD:DP:GQ:PL 1/1:0,250:250:99:8036,749,0 17 40835819 rs36108420 A AT 1287.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.642;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.47;ReadPosRankSum=-0.132;SOR=0.446 GT:AD:DP:GQ:PL 0/1:50,39:89:99:1325,0,1747 17 40835922 rs2271029 A C 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.091;QD=10.93;ReadPosRankSum=2.204;SOR=0.697 GT:AD:DP:GQ:PL 0/1:73,63:136:99:1515,0,1856 17 40854534 rs3841620 G GT 1817.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=4.955;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.182;QD=12.2;ReadPosRankSum=0.344;SOR=0.464 GT:AD:DP:GQ:PL 0/1:86,63:149:99:1855,0,2701 17 40913366 rs9892728 C T 2031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.35;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=2.481;SOR=0.563 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2060,0,2259 17 41116234 rs690941 G A 13111.8 PASS AC=2;AF=1;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,425:425:99:13140,1275,0 17 41121207 rs373590793 GGGGC G 525.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.631;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0;QD=12.82;ReadPosRankSum=1.361;SOR=0.368 GT:AD:DP:GQ:PL 0/1:13,28:41:99:563,0,395 17 41121210 rs113173233 GC G 53.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=0;QD=1.31;ReadPosRankSum=-0.032;SOR=1.402 GT:AD:DP:GQ:PL 0/1:32,9:41:91:91,0,1325 17 41121217 rs7217553 G A 110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.825;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0;QD=2.64;ReadPosRankSum=0.215;SOR=1.375 GT:AD:DP:GQ:PL 0/1:33,9:42:99:139,0,857 17 41121218 . G GAA 782.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0;QD=19.57;ReadPosRankSum=0.097;SOR=0.569 GT:AD:DP:GQ:PL 0/1:9,31:40:99:820,0,144 17 41132578 rs692074 T C 4105.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4134,398,0 17 41133071 rs1708875 T C 7276.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.06 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7305,699,0 17 41154817 rs11871636 A C 902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-0.262;SOR=0.81 GT:AD:DP:GQ:PL 0/1:49,41:90:99:931,0,1173 17 41165493 rs588703 A G 3698.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.73;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3727,338,0 17 41165878 rs13229 C T 3471.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3500,341,0 17 41246481 rs1799950 T C 2906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.381;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=3.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=1.006;SOR=0.914 GT:AD:DP:GQ:PL 0/1:83,119:202:99:2935,0,2206 17 41332804 rs9904555 T C 1495.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1524,147,0 17 41477710 rs3179287 A G 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=-1.519;SOR=0.562 GT:AD:DP:GQ:PL 0/1:124,80:204:99:1822,0,3172 17 41570427 rs2279191 T C 1432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.971;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.078;SOR=0.639 GT:AD:DP:GQ:PL 0/1:60,56:116:99:1461,0,1551 17 41598940 rs2271957 T C 1795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.118;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.466;SOR=0.733 GT:AD:DP:GQ:PL 0/1:70,74:144:99:1824,0,1566 17 41603882 rs9915640 T C 2517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-0.51;SOR=0.816 GT:AD:DP:GQ:PL 0/1:103,105:208:99:2546,0,2644 17 41622740 rs2271959 G T 700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.538;SOR=0.883 GT:AD:DP:GQ:PL 0/1:33,28:61:99:729,0,913 17 41846964 rs1230403 T C 4995.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.62;SOR=1.29 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5024,474,0 17 41926126 rs72836561 C T 2404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.069;SOR=0.753 GT:AD:DP:GQ:PL 0/1:78,101:179:99:2433,0,1815 17 41955158 rs231521 A G 2682.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.72;SOR=1.525 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2711,246,0 17 41959808 rs124721 T C 6958.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6987,684,0 17 41960343 rs124719 T C 7802.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7831,807,0 17 41960633 rs412849 C G 14034.8 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,313:313:99:1|1:41960633_C_G:14063,942,0 17 41960634 rs440755 G C 14034.8 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,313:313:99:1|1:41960633_C_G:14063,942,0 17 42030531 rs1058046 G C 5340.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5369,480,0 17 42030743 rs229969 G C 6188.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6217,624,0 17 42084067 rs55708447 T C 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.151;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=0.293;SOR=0.627 GT:AD:DP:GQ:PL 0/1:141,104:245:99:2677,0,3374 17 42085150 rs228773 T C 4383.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.422 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4412,435,0 17 42085972 rs186636 C T 1745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.05;ReadPosRankSum=-1.04;SOR=0.736 GT:AD:DP:GQ:PL 0/1:116,77:193:99:1774,0,2971 17 42092267 rs35301047 C T 2256.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.442;SOR=0.763 GT:AD:DP:GQ:PL 0/1:98,95:193:99:2285,0,2500 17 42155742 rs55764662 C T 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.6;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=2.115;SOR=0.647 GT:AD:DP:GQ:PL 0/1:81,74:155:99:1769,0,2136 17 42164885 rs228757 G C 2426.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=1.874 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2455,225,0 17 42170181 rs67111880 TG T 582.75 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.733;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=10.287;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=19.42;ReadPosRankSum=2.148;SOR=3.156 GT:AD:DP:GQ:PL 1/1:3,27:30:24:620,24,0 17 42171206 rs454192 T C 4404.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4433,441,0 17 42235265 rs148641287 A C 1692.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.904;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=2.482;SOR=0.781 GT:AD:DP:GQ:PL 0/1:54,69:123:99:1721,0,1130 17 42248346 rs7218599 A T 3243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.139;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-1.569;SOR=0.861 GT:AD:DP:GQ:PL 0/1:129,141:270:99:3272,0,3234 17 42392622 rs708386 T C 2450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=0.399;SOR=0.696 GT:AD:DP:GQ:PL 0/1:87,98:185:99:2479,0,2160 17 42398052 rs2011951 A G 1557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.166;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.853;SOR=0.48 GT:AD:DP:GQ:PL 0/1:66,63:129:99:1586,0,1452 17 42398802 rs34365655 G A 3673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.099;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=3.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.078;SOR=0.534 GT:AD:DP:GQ:PL 0/1:136,154:290:99:3702,0,3094 17 42431524 rs140882895 C T 1043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.325;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.85;ReadPosRankSum=0.701;SOR=0.723 GT:AD:DP:GQ:PL 0/1:83,50:133:99:1072,0,2049 17 42449789 rs5910 G A 3818.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3847,384,0 17 42453065 rs5911 A C 6275.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=1.561 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6304,573,0 17 42454463 rs850730 G C 2792.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.06;SOR=1.788 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2821,246,0 17 42475983 rs936019 G C 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.132;SOR=0.865 GT:AD:DP:GQ:PL 0/1:68,61:129:99:1476,0,1771 17 42809529 . CTG C 2641.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.035;ClippingRankSum=0;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0.832;QD=23.38;ReadPosRankSum=1.287;SOR=0.682 GT:AD:DP:GQ:PL 0/1:45,68:113:99:2679,0,1620 17 42851729 rs35936481 C T 5001.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.18;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5030,539,0 17 42852604 rs1558083 G T 6907.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.99;SOR=1.847 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,147:147:99:1|1:42852604_G_T:6936,478,0 17 42852610 rs1558084 T C 7124.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.71;SOR=1.698 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,163:163:99:1|1:42852604_G_T:7153,497,0 17 42854610 rs8075210 T C 5972.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6001,643,0 17 42855248 rs2070603 T C 8648.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8677,832,0 17 42855554 rs2070605 T C 6341.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6370,597,0 17 43190322 rs72832860 T C 7716.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.201;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=2.396;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.03;ReadPosRankSum=0.409;SOR=0.843 GT:AD:DP:GQ:PL 1/1:3,254:257:99:7745,680,0 17 43192549 rs35911033 T TC 11315.7 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=37.22;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,304:304:99:11353,915,0 17 43318778 rs7218169 G C 12594.8 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.66;SOR=0.962 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,282:282:99:1|1:43318778_G_C:12623,858,0 17 43318779 rs7219366 C G 12594.8 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.98;SOR=0.929 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,280:280:99:1|1:43318778_G_C:12623,858,0 17 43319770 rs1801353 C T 8303.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8332,841,0 17 43333125 rs11651968 C T 3576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=6.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=1.009;SOR=0.632 GT:AD:DP:GQ:PL 0/1:151,147:298:99:3605,0,3739 17 43333785 rs76453679 AAGAC A 1113.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.935;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=2.084;QD=15.05;ReadPosRankSum=1.047;SOR=0.922 GT:AD:DP:GQ:PL 0/1:43,31:74:99:1151,0,2446 17 43342141 rs1047833 G C 2585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.347;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=1.209;SOR=0.823 GT:AD:DP:GQ:PL 0/1:79,94:173:99:2614,0,2078 17 43364293 rs56405343 C CG 9753.73 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=37.66;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,259:259:99:9791,794,0 17 43507008 rs2959953 G C 9836.77 PASS AC=2;AF=1;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9865,948,0 17 43923180 rs242944 G A 7996.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8025,797,0 17 43923898 rs171443 A G 11265.8 PASS AC=2;AF=1;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,382:382:99:11294,1146,0 17 44060859 rs63750072 A G 3759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.688;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=0.235;SOR=0.697 GT:AD:DP:GQ:PL 0/1:133,152:285:99:3788,0,3084 17 44074018 rs11568305 G A 3008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.081;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-0.732;SOR=0.617 GT:AD:DP:GQ:PL 0/1:150,126:276:99:3037,0,3881 17 44077044 rs71375329 T C 3787.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=1.152 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3816,387,0 17 44109474 rs7220988 G A 7742.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7771,735,0 17 44144993 rs144838667 C G 1939.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=1 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1968,195,0 17 44374710 rs201223330 A G 3132.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.93;QD=27.01;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3161,348,0 17 44408776 rs191224928 T C 332.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.07;QD=30.25;SOR=4.977 GT:AD:DP:GQ:PL 1/1:0,11:11:33:361,33,0 17 44408795 . G A 1262.77 PASS AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.79;QD=31.57;SOR=2.948 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1291,120,0 17 44625928 rs151267673 C A 1451.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.3;QD=34.57;SOR=7.523 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1480,125,0 17 44626660 rs1969205 C G 5043.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.7;QD=29.67;SOR=1.347 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5072,509,0 17 44626773 rs201103889 A C 169.79 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0;DB;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.5;MQ=36.34;MQRankSum=-1.593;QD=18.87;ReadPosRankSum=-2.2;SOR=2.584 GT:AD:DP:GQ:PL 0/1:2,7:9:22:198,0,22 17 44632540 rs144051917 T C 1804.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.73;QD=30.59;SOR=8.189 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1833,177,0 17 44950122 rs4968281 T C 2269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.469;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-1.469;SOR=0.631 GT:AD:DP:GQ:PL 0/1:104,96:200:99:2298,0,2342 17 45000547 rs183199 G C 1840.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=1.733 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1869,174,0 17 45017859 rs758392 A G 1572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.703;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=14.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-1.063;SOR=1.279 GT:AD:DP:GQ:PL 0/1:69,63:132:99:1601,0,1768 17 45219354 rs7220394 A G 937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.416;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.422;SOR=0.567 GT:AD:DP:GQ:PL 0/1:42,41:83:99:966,0,953 17 45234760 rs11372544 C CA 408.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=6.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.7;ReadPosRankSum=1.118;SOR=1.546 GT:AD:DP:GQ:PL 0/1:38,23:72:99:446,0,732 17 45385012 rs3809863 C T 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.839;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=3.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.808;SOR=1.039 GT:AD:DP:GQ:PL 0/1:66,56:122:99:1495,0,1599 17 45438886 rs10538163 CAGTG C 1329.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.555;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.27;ReadPosRankSum=-0.552;SOR=1.024 GT:AD:DP:GQ:PL 0/1:34,35:69:99:1367,0,1443 17 45451894 rs4968318 G A 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-1.495;SOR=0.661 GT:AD:DP:GQ:PL 0/1:44,36:80:99:841,0,1225 17 45669428 rs59875832 T TA 577.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.1;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=2.528;MLEAC=1;MLEAF=0.5;MQ=54.76;MQRankSum=-4.914;QD=13.13;ReadPosRankSum=0.329;SOR=1.115 GT:AD:DP:GQ:PL 0/1:19,25:49:99:615,0,334 17 45695832 rs3760370 C T 871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=-1.083;SOR=0.739 GT:AD:DP:GQ:PL 0/1:45,39:84:99:900,0,1173 17 45734209 rs68149542 CTTT C 1628.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=5.65;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.158;QD=16.13;ReadPosRankSum=1.131;SOR=0.291 GT:AD:DP:GQ:PL 0/1:57,44:101:99:1666,0,2370 17 45755765 . A G 646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DP=85;ExcessHet=3.0103;FS=7.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.7;ReadPosRankSum=-0.194;SOR=1.552 GT:AD:DP:GQ:PL 0/1:53,31:84:99:675,0,1258 17 45774072 rs8078309 T C 2328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.347;SOR=0.722 GT:AD:DP:GQ:PL 0/1:113,102:215:99:2357,0,2836 17 45786452 rs4794057 C T 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.546;SOR=0.636 GT:AD:DP:GQ:PL 0/1:131,129:260:99:3068,0,3271 17 45786621 rs80267077 G A 3167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.111;SOR=0.889 GT:AD:DP:GQ:PL 0/1:147,126:273:99:3196,0,3957 17 45885687 rs9907142 A G 4589.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4618,485,0 17 45885756 rs9911983 C T 5207.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5236,506,0 17 45887951 rs2074189 G T 1427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.161;SOR=0.682 GT:AD:DP:GQ:PL 0/1:60,57:117:99:1456,0,1546 17 45890707 rs2301690 C T 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.178;SOR=0.751 GT:AD:DP:GQ:PL 0/1:142,127:269:99:2859,0,3589 17 45893862 rs17773860 G A 3523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=0.437;SOR=0.79 GT:AD:DP:GQ:PL 0/1:124,143:267:99:3552,0,2872 17 45894735 rs9914156 A G 1922.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1951,191,0 17 45896478 rs878171 T C 1649.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1678,177,0 17 45904420 rs11538868 C T 2682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=0.723;SOR=0.754 GT:AD:DP:GQ:PL 0/1:95,109:204:99:2711,0,2412 17 45905850 rs4793671 C T 3228.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=1.779 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3257,303,0 17 45913847 rs16948662 C A 2561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.214;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-2.31;SOR=0.686 GT:AD:DP:GQ:PL 0/1:84,110:194:99:2590,0,2092 17 45915788 rs7350974 T C 8487.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8516,803,0 17 45994044 rs2228253 C T 2647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.155;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.656;SOR=0.763 GT:AD:DP:GQ:PL 0/1:131,114:245:99:2676,0,3596 17 45994094 rs2228251 T C 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.158;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=0.626;SOR=0.733 GT:AD:DP:GQ:PL 0/1:118,100:218:99:2469,0,2904 17 45994154 rs2229358 G A 1963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.731;SOR=0.824 GT:AD:DP:GQ:PL 0/1:100,84:184:99:1992,0,2616 17 46000406 rs62067380 T C 2004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.464;SOR=0.834 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2033,0,2433 17 46002744 rs1130932 G T 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.488;SOR=0.826 GT:AD:DP:GQ:PL 0/1:73,69:142:99:1547,0,1951 17 46115072 rs199699704 C CG 4095.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.551;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.51;ReadPosRankSum=-1.193;SOR=1.27 GT:AD:DP:GQ:PL 1/1:2,128:130:99:4133,329,0 17 46115084 rs201261614 T TGG 6097.73 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.19;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,138:138:99:6135,418,0 17 46115122 . A AG 4049.73 PASS AC=2;AF=1;AN=2;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.5;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:4087,331,0 17 46132532 rs150160489 C CTAAAG 3289.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.101;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.006;QD=19.47;ReadPosRankSum=1.258;SOR=0.769 GT:AD:DP:GQ:PL 0/1:84,85:169:99:3327,0,3758 17 46198876 rs3744346 G C 4029.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4058,410,0 17 46262171 rs2278868 C T 4162.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4191,438,0 17 46607021 rs7226137 T C 5786.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5815,552,0 17 46629593 rs2229304 G T 7627.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7656,764,0 17 46670520 rs7406798 T C 4797.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4826,448,0 17 46688256 rs7406910 T C 4682.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.22;ReadPosRankSum=-0.579;SOR=0.542 GT:AD:DP:GQ:PL 1/1:1,149:150:99:4711,412,0 17 46802008 rs2271891 C G 1980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.664;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.888;SOR=0.903 GT:AD:DP:GQ:PL 0/1:74,76:152:99:2009,0,1827 17 46805590 rs8556 G A 2290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=1.008;SOR=0.759 GT:AD:DP:GQ:PL 0/1:121,100:221:99:2319,0,3010 17 46847364 rs2032844 C A 2936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=1.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-3.022;SOR=0.766 GT:AD:DP:GQ:PL 0/1:120,122:242:99:2965,0,2988 17 46894377 rs3959442 A C 1757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=1.169;SOR=0.841 GT:AD:DP:GQ:PL 0/1:51,72:123:99:1786,0,1123 17 46939658 rs10278 C G 316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.12;ReadPosRankSum=-0.35;SOR=0.856 GT:AD:DP:GQ:PL 0/1:22,17:39:99:345,0,559 17 46970836 rs684682 A G 4515.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.934 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4544,491,0 17 46973139 rs35074390 TG T 4105.73 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4143,397,0 17 47000251 rs1058018 C T 1822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.58;ReadPosRankSum=0.365;SOR=0.774 GT:AD:DP:GQ:PL 0/1:43,74:117:99:1851,0,1028 17 47007963 rs2270576 C T 1833.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.33;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-3.229;SOR=0.831 GT:AD:DP:GQ:PL 0/1:66,79:145:99:1862,0,1752 17 47039132 rs2291725 T C 591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.33;ReadPosRankSum=2.123;SOR=0.554 GT:AD:DP:GQ:PL 0/1:44,27:71:99:620,0,1189 17 47076551 rs2411760 G T 1339.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.68;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1368,121,0 17 47120776 rs2289636 T C 1248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.872;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.744;SOR=0.682 GT:AD:DP:GQ:PL 0/1:58,51:109:99:1277,0,1390 17 47210429 rs7207842 A G 3735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.601;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.944;SOR=0.815 GT:AD:DP:GQ:PL 0/1:148,153:301:99:3764,0,3549 17 47210506 rs7207403 C A 3608.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=5.645;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=2.53;SOR=0.48 GT:AD:DP:GQ:PL 0/1:127,143:270:99:3637,0,3384 17 47219542 rs12453819 G A 1622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.263;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.578;SOR=0.779 GT:AD:DP:GQ:PL 0/1:85,70:155:99:1651,0,2085 17 47241604 rs8074457 T C 4755.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4784,480,0 17 47284683 rs2293215 C T 1034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=-0.822;SOR=0.602 GT:AD:DP:GQ:PL 0/1:25,45:70:99:1063,0,510 17 47297297 rs616338 T C 4887.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4916,453,0 17 47484228 rs2233667 G C 1036.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.03;ReadPosRankSum=-0.112;SOR=0.499 GT:AD:DP:GQ:PL 0/1:27,42:69:99:1065,0,636 17 47588000 rs11466155 C T 5759.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=1.053 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5788,576,0 17 47696586 rs2066747 GA G 1740.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.099;QD=13.82;ReadPosRankSum=0.025;SOR=0.926 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1778,0,2149 17 47783663 rs1135034 C T 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=6.182;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.431;SOR=1.339 GT:AD:DP:GQ:PL 0/1:55,55:110:99:1350,0,1263 17 47785275 . C G 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.888;ClippingRankSum=0;DP=163;ExcessHet=3.0103;FS=4.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.972;SOR=1.127 GT:AD:DP:GQ:PL 0/1:88,74:162:99:1854,0,2048 17 47888852 rs4462645 A G 1822.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1851,188,0 17 48070878 rs2303466 C T 2231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.364;SOR=0.535 GT:AD:DP:GQ:PL 0/1:105,95:200:99:2260,0,2702 17 48072225 rs33937843 G A 2845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.243;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-0.34;SOR=0.731 GT:AD:DP:GQ:PL 0/1:161,119:280:99:2874,0,4060 17 48151353 rs2285524 T C 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.558;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-2.047;SOR=0.668 GT:AD:DP:GQ:PL 0/1:57,44:101:99:1141,0,1347 17 48151908 rs4793639 T C 2843.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2872,279,0 17 48158685 rs55893410 C T 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.156;SOR=1.17 GT:AD:DP:GQ:PL 0/1:27,26:53:99:682,0,710 17 48174908 rs9839 C T 1445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.463;SOR=0.7 GT:AD:DP:GQ:PL 0/1:85,67:152:99:1474,0,2081 17 48226811 rs74676292 C T 4034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.06;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=0.732;SOR=0.573 GT:AD:DP:GQ:PL 0/1:154,160:314:99:4063,0,3820 17 48227384 . G GGC 8355.73 PASS AC=2;AF=1;AN=2;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.94;SOR=0.811 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,178:178:99:1|1:48227384_G_GGC:8393,563,0 17 48227403 . G GGC 9117.73 PASS AC=2;AF=1;AN=2;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.05;SOR=0.734 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,198:198:99:1|1:48227384_G_GGC:9155,620,0 17 48252804 rs2696288 T C 4603.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=1.357 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4632,423,0 17 48263021 rs2249492 C T 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=0.567;SOR=0.812 GT:AD:DP:GQ:PL 0/1:134,123:257:99:3034,0,3374 17 48265495 rs1800215 T C 4433.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4462,447,0 17 48267291 rs2075559 G C 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.336;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=6.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=1.157;SOR=1.136 GT:AD:DP:GQ:PL 0/1:103,76:179:99:2059,0,2758 17 48267585 rs2075558 A C 2377.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.49;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2406,213,0 17 48268223 rs2734272 A G 4846.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4875,506,0 17 48269903 rs2696247 A G 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.74;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-1.312;SOR=0.687 GT:AD:DP:GQ:PL 0/1:81,74:155:99:1914,0,2107 17 48276971 rs2256835 G C 2577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=1.484;SOR=0.5 GT:AD:DP:GQ:PL 0/1:92,98:190:99:2606,0,2624 17 48355968 rs55649994 C T 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=0.033;SOR=0.669 GT:AD:DP:GQ:PL 0/1:102,85:187:99:1943,0,2487 17 48356260 rs6504642 G C 8450.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8479,834,0 17 48437456 rs6504649 C G 3590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.309;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.543;SOR=0.708 GT:AD:DP:GQ:PL 0/1:145,144:289:99:3619,0,3737 17 48452776 rs3760413 A C 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.45;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=0.628;SOR=0.643 GT:AD:DP:GQ:PL 0/1:115,95:210:99:2513,0,2750 17 48472270 rs3760407 C T 616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=5.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=1.712;SOR=0.256 GT:AD:DP:GQ:PL 0/1:32,33:65:99:645,0,659 17 48539035 rs9674937 T C 4527.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4556,450,0 17 48556228 rs151222980 C CGCGCT 6894.73 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=45.66;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,151:151:99:6932,466,0 17 48557326 rs2290862 G A 10535.8 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.72;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,241:241:99:1|1:48557326_G_A:10564,731,0 17 48557348 rs2290861 T C 10465.8 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.79;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,239:239:99:1|1:48557326_G_A:10494,722,0 17 48559559 rs7210579 A G 9498.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.53;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,292:292:99:9527,876,0 17 48559722 rs137932823 G C 3461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=4.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-1.54;SOR=0.525 GT:AD:DP:GQ:PL 0/1:136,128:264:99:3490,0,4032 17 48598785 rs1380657 G A 2671.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2700,275,0 17 48599450 rs7216625 A T 3149.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.39;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3178,345,0 17 48603503 rs9890721 C T 6116.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6145,581,0 17 48606537 rs1133818 C G 4740.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=1.007 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4769,453,0 17 48608717 rs1064055 T C 3966.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.55;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3995,431,0 17 48614426 rs143725319 G A 2754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=0.006;SOR=0.804 GT:AD:DP:GQ:PL 0/1:156,124:280:99:2783,0,3925 17 48619249 rs4794159 C A 2784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.688;SOR=0.8 GT:AD:DP:GQ:PL 0/1:124,117:241:99:2813,0,3203 17 48625828 rs8076470 C T 2117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.822;SOR=0.706 GT:AD:DP:GQ:PL 0/1:100,86:186:99:2146,0,2653 17 48625928 rs8076632 C G 2366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.723;SOR=0.682 GT:AD:DP:GQ:PL 0/1:87,91:178:99:2395,0,2447 17 48626242 rs117351904 C T 1956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.95;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=2.385;SOR=0.941 GT:AD:DP:GQ:PL 0/1:104,82:186:99:1985,0,2741 17 48626389 rs8077316 C T 4321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.89;ReadPosRankSum=-0.658;SOR=0.531 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,116:272:99:0|1:48626389_C_T:4350,0,7691 17 48626398 rs8077323 C T 4483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.717;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.84;ReadPosRankSum=-0.806;SOR=0.556 GT:AD:DP:GQ:PGT:PID:PL 0/1:162,121:283:99:0|1:48626389_C_T:4512,0,7822 17 48628092 rs1132414 A G 1824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.24;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.426;SOR=0.768 GT:AD:DP:GQ:PL 0/1:95,65:160:99:1853,0,2494 17 48628470 rs9913430 T A 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.281;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-1.375;SOR=0.717 GT:AD:DP:GQ:PL 0/1:75,78:153:99:1762,0,1650 17 48629312 rs8082568 G C 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.27;SOR=0.578 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1415,0,1542 17 48629458 rs8065903 A G 6450.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6479,620,0 17 48631607 rs739924 T C 1481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.046;SOR=0.888 GT:AD:DP:GQ:PL 0/1:68,60:128:99:1510,0,1905 17 48653354 rs12449998 C A 3645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=5.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.073;SOR=0.637 GT:AD:DP:GQ:PL 0/1:156,159:315:99:3674,0,3481 17 48692881 rs8066527 C T 1610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.2;SOR=0.573 GT:AD:DP:GQ:PL 0/1:86,71:157:99:1639,0,2117 17 48693760 rs4794171 G C 858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.176;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.018;SOR=0.593 GT:AD:DP:GQ:PL 0/1:37,39:76:99:887,0,760 17 48703752 rs739925 T C 3056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.84;ReadPosRankSum=0.638;SOR=0.622 GT:AD:DP:GQ:PL 0/1:82,111:193:99:3085,0,2036 17 48797210 rs11398903 T TG 4699.73 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=35.07;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4737,403,0 17 48917333 rs9675120 C T 4286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-0.87;SOR=0.66 GT:AD:DP:GQ:PL 0/1:169,166:335:99:4315,0,4614 17 48940422 rs4626 T C 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.752;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.398;SOR=0.604 GT:AD:DP:GQ:PL 0/1:84,78:162:99:1967,0,2000 17 49076857 rs377700707 TA T 131.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.228;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.398;QD=2.31;ReadPosRankSum=0.267;SOR=0.487 GT:AD:DP:GQ:PL 0/1:41,16:63:99:169,0,889 17 49124845 rs11400140 G GA 591.73 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=1.508 GT:AD:DP:GQ:PL 1/1:0,21:21:63:629,63,0 17 49338257 rs14180 C T 8162.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.26;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8191,758,0 17 49713205 rs10514986 G T 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.745;SOR=0.948 GT:AD:DP:GQ:PL 0/1:41,42:83:99:1025,0,1086 17 49713300 rs11870209 G A 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.657;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.886;QD=11.01;ReadPosRankSum=-0.066;SOR=0.641 GT:AD:DP:GQ:PL 0/1:65,53:118:99:1328,0,1526 17 51900836 rs59657238 C T 2358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.375;SOR=0.636 GT:AD:DP:GQ:PL 0/1:118,97:215:99:2387,0,3133 17 51901084 rs3803825 A G 2507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.422;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.721;SOR=0.643 GT:AD:DP:GQ:PL 0/1:115,106:221:99:2536,0,2737 17 51901643 rs4561518 C T 1893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=5.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=1.121;SOR=0.767 GT:AD:DP:GQ:PL 0/1:104,79:183:99:1922,0,2642 17 51901703 rs4561519 C G 2140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.718;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=1.281;SOR=0.818 GT:AD:DP:GQ:PL 0/1:105,86:191:99:2169,0,2676 17 51902252 rs3826355 C T 1477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=1.326;SOR=0.699 GT:AD:DP:GQ:PL 0/1:73,59:132:99:1506,0,2004 17 53038654 rs1802212 A C 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.371;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=0.223;SOR=0.976 GT:AD:DP:GQ:PL 0/1:50,63:113:99:1779,0,1191 17 53076799 rs1156287 G A 3220.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.76;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3249,336,0 17 53076986 rs11658717 G A 2329.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.319 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2358,225,0 17 53485186 rs2286806 C T 588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=2.002;SOR=0.711 GT:AD:DP:GQ:PL 0/1:41,30:71:99:617,0,951 17 53844833 rs57156382 CT C 1465.73 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.71;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,57:63:99:1503,187,0 17 53851071 rs2960063 A G 6424.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.62;SOR=1.318 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,144:144:99:1|1:53851071_A_G:6453,436,0 17 53851078 rs2912558 T C 6565.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.77;SOR=1.288 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,150:150:99:1|1:53851071_A_G:6594,451,0 17 53851228 rs2960062 C T 6822.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,230:232:99:6851,689,0 17 54450038 rs957724 C A 5888.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=1.004 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5917,629,0 17 54450134 rs8069322 G A 6878.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6907,719,0 17 54534634 rs10852985 G A 2372.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2401,222,0 17 54535280 rs372748194 A T 1215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.783;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.992;SOR=0.557 GT:AD:DP:GQ:PL 0/1:70,55:125:99:1244,0,1652 17 54921494 rs3760158 A C 3015.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.073;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=3.407;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.28;ReadPosRankSum=1.928;SOR=0.543 GT:AD:DP:GQ:PL 1/1:1,102:103:99:3044,299,0 17 54925480 rs56356802 C CAT 1213.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.043;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=34.68;ReadPosRankSum=-0.032;SOR=0.66 GT:AD:DP:GQ:PL 1/1:2,33:39:60:1225,60,0 17 54978794 rs205498 G A 7562.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7591,768,0 17 55027850 rs8071691 T C 2363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=59.1;MQRankSum=-3.782;QD=12.92;ReadPosRankSum=0.199;SOR=0.756 GT:AD:DP:GQ:PL 0/1:86,97:183:99:2392,0,2159 17 55065558 rs11437466 T TA 1518.73 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.75;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1556,135,0 17 55079471 rs12940187 T C 1569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.599;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.511;SOR=0.763 GT:AD:DP:GQ:PL 0/1:75,67:142:99:1598,0,1664 17 55182878 rs17761023 C T 1901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.762;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-1.42;SOR=0.726 GT:AD:DP:GQ:PL 0/1:114,86:200:99:1930,0,2707 17 55183716 rs1050515 T C 4524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.464;SOR=0.804 GT:AD:DP:GQ:PL 0/1:151,186:337:99:4553,0,3574 17 55183792 rs35359994 G A 2701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.515;ClippingRankSum=0;DB;DP=456;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=8.991;SOR=0.738 GT:AD:DP:GQ:PL 0/1:209,86:295:99:2730,0,8272 17 55183813 rs34535433 A G 6187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=444;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.65;ReadPosRankSum=3.019;SOR=0.75 GT:AD:DP:GQ:PL 0/1:165,86:251:99:6216,0,8156 17 55950064 rs35704289 C T 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.579;SOR=0.466 GT:AD:DP:GQ:PL 0/1:118,94:212:99:2135,0,3049 17 55951037 rs17762338 C T 1870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-0.819;SOR=0.56 GT:AD:DP:GQ:PL 0/1:104,85:189:99:1899,0,2571 17 56060215 rs2228270 T C 3332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.526;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=3.348;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=12.44;ReadPosRankSum=1.233;SOR=0.921 GT:AD:DP:GQ:PL 0/1:134,134:268:99:3361,0,3236 17 56321451 rs67390833 GACAC G 1423.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.39;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.98;ReadPosRankSum=0.068;SOR=0.682 GT:AD:DP:GQ:PL 0/1:21,36:67:99:1461,0,799 17 56357833 rs2856857 G A 1803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.264;SOR=0.425 GT:AD:DP:GQ:PL 0/1:74,72:146:99:1832,0,1903 17 56382512 rs11867412 C T 891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.019;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.521;SOR=0.638 GT:AD:DP:GQ:PL 0/1:55,39:94:99:920,0,1316 17 56383187 rs3744102 C T 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.761;SOR=0.6 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1340,0,1410 17 56383744 rs11079346 T C 2667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.052;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=7.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-2.357;SOR=1.133 GT:AD:DP:GQ:PL 0/1:109,117:226:99:2696,0,2454 17 56386118 rs2680689 A G 3105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.06;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-1.652;SOR=0.752 GT:AD:DP:GQ:PL 0/1:145,122:267:99:3134,0,3901 17 56386358 rs2526360 T A 3786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.324;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=1.972;SOR=0.736 GT:AD:DP:GQ:PL 0/1:148,145:293:99:3815,0,3758 17 56388238 rs2680704 C G 4749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=396;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-0.439;SOR=0.693 GT:AD:DP:GQ:PL 0/1:195,197:392:99:4778,0,4910 17 56388927 rs2072144 T C 1854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.239;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.002;SOR=0.742 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1883,0,2149 17 56438301 rs2680701 G A 2203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=3.542;SOR=0.681 GT:AD:DP:GQ:PL 0/1:88,90:178:99:2232,0,2180 17 56448297 rs2257205 C T 2894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=0.569;SOR=0.606 GT:AD:DP:GQ:PL 0/1:105,128:233:99:2923,0,2368 17 56544280 rs1017089 T G 1908.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.91;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1937,174,0 17 56581651 rs4277402 C G 2472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.532;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=0.024;SOR=0.65 GT:AD:DP:GQ:PL 0/1:89,101:190:99:2501,0,2420 17 56584508 rs2302190 T C 1775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.38;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.255;SOR=0.51 GT:AD:DP:GQ:PL 0/1:82,75:157:99:1804,0,2152 17 56618030 rs8073754 C T 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.46;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.27;ReadPosRankSum=0.022;SOR=0.757 GT:AD:DP:GQ:PL 0/1:74,46:120:99:1021,0,1901 17 56621286 rs8071623 G T 3094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.644;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=8.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.094;SOR=0.735 GT:AD:DP:GQ:PL 0/1:141,144:285:99:3123,0,3428 17 56621359 rs6503867 T C 3226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.084;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=0.196;SOR=0.691 GT:AD:DP:GQ:PL 0/1:113,135:248:99:3255,0,2821 17 56636854 rs7225128 T C 700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.57;ReadPosRankSum=-0.939;SOR=0.7 GT:AD:DP:GQ:PL 0/1:18,27:45:99:729,0,432 17 56636908 rs9903050 T C 378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.635;SOR=0.693 GT:AD:DP:GQ:PL 0/1:16,18:34:99:407,0,451 17 56659018 rs6503870 C T 3716.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.95;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3745,399,0 17 56676368 rs389389 T C 1549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.696;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=7.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=1.27;SOR=1.395 GT:AD:DP:GQ:PL 0/1:51,57:108:99:1578,0,1258 17 56690848 rs8077548 T C 2594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.752;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.18;ReadPosRankSum=-0.023;SOR=0.671 GT:AD:DP:GQ:PL 0/1:79,104:183:99:2623,0,1711 17 56833457 rs201186780 G GGAACCC 17604.7 PASS AC=2;AF=1;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=45.14;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,390:390:99:17642,1184,0 17 57287454 rs6503905 A G 1721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.897;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.865;SOR=0.796 GT:AD:DP:GQ:PL 0/1:84,71:155:99:1750,0,2030 17 57663596 rs58298344 TA T 211.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-2.631;QD=2.82;ReadPosRankSum=-0.807;SOR=1.007 GT:AD:DP:GQ:PL 0/1:56,19:95:99:249,0,1063 17 57725043 rs8071749 T G 2446.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=1.55 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2475,231,0 17 57762402 . CT C 58.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.279;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=3.974;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.74;ReadPosRankSum=2.38;SOR=1.334 GT:AD:DP:GQ:PL 0/1:65,14:84:96:96,0,1590 17 57937792 . G GA 77.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=1.796;QD=2.16;ReadPosRankSum=-0.311;SOR=1.106 GT:AD:DP:GQ:PL 0/1:27,9:36:99:115,0,487 17 57963537 rs1292053 A G 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.016;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=0.246;SOR=0.751 GT:AD:DP:GQ:PL 0/1:85,94:179:99:2135,0,1783 17 58031412 rs11368 A G 437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.592;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=1.174;SOR=0.693 GT:AD:DP:GQ:PL 0/1:44,22:66:99:466,0,1061 17 58037413 rs111857062 T C 526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=50.1;MQRankSum=-0.168;QD=11.97;ReadPosRankSum=-0.815;SOR=0.538 GT:AD:DP:GQ:PL 0/1:22,22:44:99:555,0,519 17 58786625 rs2643103 A G 1704.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1733,171,0 17 58824567 rs7501675 T C 2987.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.66;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3016,323,0 17 58824617 rs34431714 G A 1093.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-0.269;SOR=0.667 GT:AD:DP:GQ:PL 0/1:60,51:111:99:1122,0,1406 17 59001879 . CT C 348.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.476;QD=5.05;ReadPosRankSum=-1.504;SOR=0.527 GT:AD:DP:GQ:PL 0/1:42,27:82:99:386,0,799 17 59482065 rs182290035 C A 2684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.647;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.19;ReadPosRankSum=-0.127;SOR=0.687 GT:AD:DP:GQ:PL 0/1:178,150:328:99:2713,0,4297 17 59485555 rs1057987 C T 10021.8 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,334:334:99:10050,1001,0 17 59489893 rs9907379 T C 5262.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.52;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5291,471,0 17 59533868 rs3744448 G C 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.359;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-1.663;SOR=0.623 GT:AD:DP:GQ:PL 0/1:111,91:202:99:2235,0,2897 17 59534987 rs3744447 T G 1178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.841;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=0.01;SOR=0.66 GT:AD:DP:GQ:PL 0/1:54,53:107:99:1207,0,1058 17 59763465 rs4986765 T C 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.974;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=1.333;SOR=0.778 GT:AD:DP:GQ:PL 0/1:77,60:137:99:1587,0,1846 17 59955426 rs606072 T G 2106.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2135,207,0 17 60043884 rs671347 G A 3065.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3094,300,0 17 60140614 rs35998015 T C 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.117;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.044;SOR=0.922 GT:AD:DP:GQ:PL 0/1:53,50:103:99:1234,0,1319 17 60464688 rs9909704 C T 2975.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3004,309,0 17 60503892 rs2543409 A G 3133.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.5;QD=33.34;SOR=2.019 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3162,282,0 17 60503921 rs2319055 T C 1811.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.56;QD=35.52;SOR=2.54 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1840,153,0 17 60683503 rs8078132 A G 1669.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1698,168,0 17 60741917 rs2014055 G A 5696.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=1.215 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5725,568,0 17 60758273 rs2245463 G C 7456.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7485,753,0 17 60766224 rs2465430 A G 3742.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3771,351,0 17 60766269 rs77011456 C T 1715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=0.446;SOR=0.603 GT:AD:DP:GQ:PL 0/1:77,77:154:99:1744,0,1774 17 60767015 rs2429387 G A 8444.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8473,872,0 17 60824224 rs17746153 A G 1156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.805;SOR=0.405 GT:AD:DP:GQ:PL 0/1:41,50:91:99:1185,0,928 17 61315272 rs2460111 G A 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.146;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=0.04;SOR=0.951 GT:AD:DP:GQ:PL 0/1:75,59:134:99:1410,0,1856 17 61559923 rs4309 C T 6473.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6502,668,0 17 61562309 rs4316 C T 6325.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6354,615,0 17 61564052 rs4331 A G 5890.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5919,608,0 17 61565990 rs4341 G C 4830.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.45;SOR=1.436 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,104:104:99:1|1:61565990_G_C:4859,337,0 17 61565998 rs4342 A C 4875.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.77;SOR=1.302 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,114:114:99:1|1:61565990_G_C:4904,343,0 17 61566031 rs4343 G A 4704.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.68;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4733,507,0 17 61573761 rs4362 T C 8147.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.07 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8176,795,0 17 61574492 rs4363 G A 4896.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=-0.672;SOR=0.292 GT:AD:DP:GQ:PL 1/1:1,156:157:99:4925,428,0 17 61607708 rs7221517 T C 6305.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6334,647,0 17 61611423 rs7225568 T C 4190.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.74;SOR=3.811 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4219,384,0 17 61660889 rs66502552 CG C 4481.73 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=31.56;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4519,427,0 17 61973513 rs141257177 G C 248.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.59;QD=27.64;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,9:9:27:277,27,0 17 61987570 rs2727307 G T 17513.8 PASS AC=2;AF=1;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.45;SOR=0.756 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,394:394:99:1|1:61987570_G_T:17542,1201,0 17 61987576 rs2246207 G A 17809.8 PASS AC=2;AF=1;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,398:398:99:1|1:61987570_G_T:17838,1228,0 17 61996366 rs2727338 A G 1768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.152;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=6.875;MLEAC=1;MLEAF=0.5;MQ=56.78;MQRankSum=-7.041;QD=10.99;ReadPosRankSum=0.246;SOR=0.76 GT:AD:DP:GQ:PL 0/1:92,69:161:99:1797,0,2483 17 61996378 rs182782242 C T 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.459;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=5.81;MLEAC=1;MLEAF=0.5;MQ=56.99;MQRankSum=-7.32;QD=13.87;ReadPosRankSum=0.406;SOR=0.858 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,64:164:99:0|1:61996378_C_T:2303,0,5165 17 62007498 rs2070776 A G 5700.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=0.885 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5729,540,0 17 62018773 rs2070720 T C 5996.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6025,600,0 17 62020348 rs2058194 T C 6153.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6182,621,0 17 62025238 rs13341114 G T 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.102;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.289;SOR=0.781 GT:AD:DP:GQ:PL 0/1:75,81:156:99:2014,0,2156 17 62041068 rs6504191 T C 6206.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6235,656,0 17 62076077 rs62070903 C G 1211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.241;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=-0.848;QD=9.77;ReadPosRankSum=-0.953;SOR=0.898 GT:AD:DP:GQ:PL 0/1:71,53:124:99:1240,0,1527 17 62079286 rs12939821 G A 2970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.333;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=1.487;SOR=0.71 GT:AD:DP:GQ:PL 0/1:106,121:227:99:2999,0,2908 17 62079334 rs11079520 A G 2808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.25;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=1.654;SOR=0.514 GT:AD:DP:GQ:PL 0/1:118,114:232:99:2837,0,2783 17 62121480 rs196912 T C 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.693;SOR=0.49 GT:AD:DP:GQ:PL 0/1:93,84:177:99:1972,0,2251 17 62125272 rs196923 A G 4124.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4153,425,0 17 62130129 rs74407634 C T 1306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=6.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.36;ReadPosRankSum=0.41;SOR=0.263 GT:AD:DP:GQ:PL 0/1:39,52:91:99:1335,0,972 17 62141455 rs187826 A G 4991.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5020,501,0 17 62152578 rs75995183 C T 813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=8.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.14;ReadPosRankSum=-1.815;SOR=0.36 GT:AD:DP:GQ:PL 0/1:61,39:100:99:842,0,1545 17 62152611 rs3044067 T TAA 890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.24;ReadPosRankSum=0.437;SOR=0.71 GT:AD:DP:GQ:PL 0/1:15,29:68:99:919,0,412 17 62157004 rs78213244 G A 719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.535;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=1.476;SOR=1.015 GT:AD:DP:GQ:PL 0/1:49,32:81:99:748,0,1223 17 62270941 rs34343500 C T 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.966;QD=12.49;ReadPosRankSum=-1.16;SOR=0.695 GT:AD:DP:GQ:PL 0/1:67,74:141:99:1789,0,1512 17 62855551 rs6504261 A G 1039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=8.157;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=32.584;MLEAC=1;MLEAF=0.5;MQ=52.19;MQRankSum=-9.289;QD=9.12;ReadPosRankSum=-0.419;SOR=3.304 GT:AD:DP:GQ:PL 0/1:79,35:114:99:1068,0,1958 17 62892031 . C T 201.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.062;ClippingRankSum=0;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.56;MQRankSum=-2.147;QD=10.09;ReadPosRankSum=-1.515;SOR=0.307 GT:AD:DP:GQ:PL 0/1:10,10:20:99:230,0,235 17 62892071 rs200470091 G C 300.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.955;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=24.6;MQRankSum=-4.103;QD=8.59;ReadPosRankSum=-0.32;SOR=0.446 GT:AD:DP:GQ:PL 0/1:20,15:35:99:329,0,488 17 62892159 rs199539333 G T 384.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=20.029;MLEAC=1;MLEAF=0.5;MQ=32.45;MQRankSum=-5.91;QD=4.37;ReadPosRankSum=1.955;SOR=3.485 GT:AD:DP:GQ:PL 0/1:65,23:88:99:413,0,1689 17 62892271 rs79445332 A T 2435.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.077;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=3.123;MLEAC=1;MLEAF=0.5;MQ=38.31;MQRankSum=-3.183;QD=8.01;ReadPosRankSum=1.244;SOR=0.655 GT:AD:DP:GQ:PL 0/1:174,130:304:99:2464,0,3619 17 62892413 . G A 539.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DP=46;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.5;MQ=24.82;MQRankSum=0.744;QD=11.73;ReadPosRankSum=-1.154;SOR=1.819 GT:AD:DP:GQ:PL 0/1:22,24:46:99:568,0,489 17 62892442 rs201370086 G C 318.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.596;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=23.68;MQRankSum=1.236;QD=11.81;ReadPosRankSum=-0.19;SOR=0.922 GT:AD:DP:GQ:PL 0/1:12,15:27:99:347,0,258 17 62892873 rs78035065 T C 279.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.953;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=73.047;MLEAC=1;MLEAF=0.5;MQ=54.02;MQRankSum=-10.044;QD=1.41;ReadPosRankSum=0.918;SOR=5.485 GT:AD:DP:GQ:PL 0/1:167,31:198:99:308,0,4350 17 63533768 rs1133683 G A 5441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=3.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.64;ReadPosRankSum=-0.425;SOR=0.609 GT:AD:DP:GQ:PGT:PID:PL 0/1:172,155:327:99:0|1:63533768_G_A:5470,0,7558 17 63533789 rs9915936 T C 5228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.01;ReadPosRankSum=-1.57;SOR=0.642 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,139:275:99:0|1:63533768_G_A:5257,0,6718 17 63554591 rs2240308 G A 3335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=1.175;SOR=0.654 GT:AD:DP:GQ:PL 0/1:149,140:289:99:3364,0,3806 17 63822357 rs62065084 T C 4747.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.83;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4776,462,0 17 64023642 rs11079628 A G 757.77 PASS AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,24:24:72:786,72,0 17 64050007 rs11079637 G A 2341.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2370,234,0 17 64210757 rs4581 C A 1037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=0.462;SOR=0.473 GT:AD:DP:GQ:PL 0/1:48,43:91:99:1066,0,1171 17 64685078 rs2227857 G A 641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=-2.632;SOR=0.846 GT:AD:DP:GQ:PL 0/1:47,31:78:99:670,0,1225 17 64783081 rs6504459 G A 2355.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.04;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2384,252,0 17 65052304 rs1799938 G A 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.981;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-1.558;SOR=0.655 GT:AD:DP:GQ:PL 0/1:101,103:204:99:2347,0,2197 17 65104666 rs11657929 T G 5029.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5058,510,0 17 65104743 rs11653020 G A 4389.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4418,458,0 17 65110436 rs2302158 A G 2111.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.07;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2140,242,0 17 65212042 rs8080100 C T 1187.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.99;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1216,131,0 17 65336989 rs147249453 G T 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-1.874;SOR=0.85 GT:AD:DP:GQ:PL 0/1:45,39:84:99:1005,0,1196 17 65341976 rs62086002 A G 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=0.779;SOR=0.556 GT:AD:DP:GQ:PL 0/1:41,49:90:99:1145,0,895 17 65362552 rs11079691 T A 1534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.834;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=1.075;SOR=0.631 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1563,0,1786 17 65574283 rs2570035 A G 1525.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.17;SOR=2.11 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1554,138,0 17 65665608 rs36013607 AT A 464.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=0.058;SOR=0.703 GT:AD:DP:GQ:PL 0/1:24,27:56:99:502,0,548 17 65739627 rs10127 A G 493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.84;ReadPosRankSum=1.693;SOR=0.689 GT:AD:DP:GQ:PL 0/1:36,27:63:99:522,0,805 17 65955651 rs8068790 T C 3521.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.02;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3550,330,0 17 65988049 rs9891146 T C 4514.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4543,440,0 17 65989048 rs28368756 T C 5285.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5314,521,0 17 66038181 rs62084696 C G 2185.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=1.362 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2214,210,0 17 66039350 rs4638 A G 5184.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5213,506,0 17 66041871 rs78746494 AT A 49.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.432;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.96;ReadPosRankSum=-1.094;SOR=1.147 GT:AD:DP:GQ:PL 0/1:42,10:63:87:87,0,977 17 66246416 rs3213690 A G 7713.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7742,737,0 17 66253095 rs7105 T A 3880.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3909,378,0 17 66265367 rs199555462 T C 197.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=21.919;MLEAC=1;MLEAF=0.5;MQ=33.59;MQRankSum=2.021;QD=8.24;ReadPosRankSum=0.634;SOR=4.399 GT:AD:DP:GQ:PL 0/1:16,8:24:99:226,0,469 17 66267691 rs7222013 A T 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.065;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=1.066;QD=12.58;ReadPosRankSum=0.808;SOR=0.684 GT:AD:DP:GQ:PL 0/1:88,98:186:99:2369,0,1976 17 66449122 rs883541 G A 1227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=-0.992;SOR=0.8 GT:AD:DP:GQ:PL 0/1:40,50:90:99:1256,0,1013 17 66453572 rs146213184 GGCCCGGGAA G 3497.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.913;QD=21.46;ReadPosRankSum=-1.462;SOR=0.661 GT:AD:DP:GQ:PL 0/1:73,90:163:99:3535,0,2793 17 66533655 rs2907373 A G 1791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.15;SOR=0.54 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1820,0,2175 17 66538239 rs2302234 G T 2209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.704;SOR=0.606 GT:AD:DP:GQ:PL 0/1:100,89:189:99:2238,0,2523 17 66539847 rs2286562 C T 983.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.602;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=3.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=0.609;SOR=1.034 GT:AD:DP:GQ:PL 0/1:92,46:138:99:1012,0,2224 17 66872802 rs1481 G C 7407.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7436,772,0 17 66985992 rs2302294 T G 1376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.437;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=1.063;SOR=0.417 GT:AD:DP:GQ:PL 0/1:41,61:102:99:1405,0,990 17 67024799 rs8066758 T A 600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=0.603;SOR=0.346 GT:AD:DP:GQ:PL 0/1:27,32:59:99:629,0,772 17 67028260 rs2302291 T C 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.512;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=-0.958;SOR=0.789 GT:AD:DP:GQ:PL 0/1:90,76:166:99:1722,0,1977 17 67031369 rs1860448 T C 3415.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.92;SOR=1.008 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3444,321,0 17 67031457 rs1860447 C T 5064.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5093,533,0 17 67081830 rs2302134 T C 2730.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.34;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2759,270,0 17 67099129 rs2364315 A G 771.77 PASS AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=2.124 GT:AD:DP:GQ:PL 1/1:0,24:24:72:800,72,0 17 67101718 rs7212506 C T 2358.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=1.31 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2387,240,0 17 67109894 rs9282552 C T 2441.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.639 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2470,240,0 17 67125840 rs4968839 C T 1400.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.47;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1429,153,0 17 67170736 rs740520 A G 3127.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3156,311,0 17 67178316 rs4968849 A G 5962.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,205:205:99:5991,613,0 17 67178954 rs4968851 C T 3629.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=28.81;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3658,376,0 17 67210992 rs11657804 T C 989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.483;SOR=0.557 GT:AD:DP:GQ:PL 0/1:43,46:89:99:1018,0,963 17 67212031 rs11077414 A G 5564.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5593,578,0 17 67212423 rs9909216 G A 4617.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4646,465,0 17 67215712 rs12941264 C T 3006.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.68;SOR=1.237 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3035,294,0 17 67260926 rs12449649 A G 2730.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2759,249,0 17 67273882 rs536009 C A 3479.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3508,371,0 17 70118935 rs2229989 C T 2529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=1.25;SOR=0.713 GT:AD:DP:GQ:PL 0/1:137,118:255:99:2558,0,3374 17 70845949 . CA C 145.77 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.739;ClippingRankSum=0;DP=170;ExcessHet=3.0103;FS=7.632;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.448;QD=1.27;ReadPosRankSum=-0.826;SOR=1.267 GT:AD:DP:GQ:PL 0/1:91,24:150:99:174,0,2110 17 70943990 rs2466517 T C 5869.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5898,602,0 17 71201675 rs3829571 T C 2718.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=1.305 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2747,279,0 17 71232804 rs904384 C A 5260.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5289,531,0 17 71346943 rs4969107 A G 3918.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3947,377,0 17 71390366 rs904381 C A 4052.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.74;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4081,423,0 17 71398170 rs9302962 G C 2286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.405;SOR=0.83 GT:AD:DP:GQ:PL 0/1:90,103:193:99:2315,0,1981 17 71410891 rs12386051 C T 1015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=6.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.333;SOR=1.311 GT:AD:DP:GQ:PL 0/1:50,48:98:99:1044,0,1207 17 71420035 rs6501636 T C 3092.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=30.03;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3121,309,0 17 71452208 rs34494368 C T 1465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.771;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.831;SOR=0.968 GT:AD:DP:GQ:PL 0/1:65,60:125:99:1494,0,1662 17 71503636 rs9895895 T C 5455.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5484,542,0 17 72209858 rs7206926 A G 3092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.992;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.828;SOR=0.844 GT:AD:DP:GQ:PL 0/1:122,120:242:99:3121,0,2913 17 72233419 rs74718342 C T 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=2.507;SOR=0.545 GT:AD:DP:GQ:PL 0/1:72,52:124:99:1197,0,1867 17 72233559 rs62621376 G A 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.649;SOR=0.574 GT:AD:DP:GQ:PL 0/1:130,105:235:99:2218,0,3173 17 72240177 rs35999669 T G 2192.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=0.533;SOR=0.623 GT:AD:DP:GQ:PL 0/1:87,100:187:99:2221,0,1922 17 72301432 rs8073660 A G 2782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.377;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.737;SOR=0.875 GT:AD:DP:GQ:PL 0/1:118,118:236:99:2811,0,2775 17 72305534 rs2290955 C T 2792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-1.58;SOR=0.761 GT:AD:DP:GQ:PL 0/1:127,125:252:99:2821,0,2947 17 72308319 rs1979370 G A 4400.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4429,420,0 17 72324649 rs11412158 G GC 3738.73 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=37.02;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3776,304,0 17 72338765 rs12601559 G A 1187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=-0.135;SOR=0.434 GT:AD:DP:GQ:PL 0/1:34,51:85:99:1216,0,815 17 72346855 rs11077744 T C 5319.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5348,495,0 17 72349067 rs2280108 C T 1455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=1.396;SOR=0.936 GT:AD:DP:GQ:PL 0/1:111,72:183:99:1484,0,2733 17 72350362 rs72852235 G A 7421.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7450,752,0 17 72351406 rs2271536 C T 7539.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7568,783,0 17 72366695 rs2382647 C A 5973.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=1.036 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6002,617,0 17 72368550 rs11658891 T C 3295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.788;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.02;ReadPosRankSum=0.91;SOR=0.675 GT:AD:DP:GQ:PL 0/1:111,124:235:99:3324,0,2752 17 72537878 rs2293188 G A 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.82;ReadPosRankSum=-0.067;SOR=0.834 GT:AD:DP:GQ:PL 0/1:72,57:129:99:1166,0,1887 17 72559000 rs72844312 G A 1081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-1.214;SOR=0.643 GT:AD:DP:GQ:PL 0/1:62,52:114:99:1110,0,1544 17 72563421 rs905709 T C 5605.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5634,575,0 17 72584764 rs783239 C T 3966.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3995,406,0 17 72588326 rs493430 A C 8727.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8756,830,0 17 72588806 rs545652 C A 9471.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,314:314:99:9500,942,0 17 72613589 rs581157 T G 1903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.655;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.439;SOR=0.616 GT:AD:DP:GQ:PL 0/1:81,82:163:99:1932,0,1827 17 72773794 rs9910691 C A 658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.108;SOR=0.611 GT:AD:DP:GQ:PL 0/1:28,31:59:99:687,0,634 17 72784932 rs2016126 G A 1277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.024;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=1.243;SOR=0.776 GT:AD:DP:GQ:PL 0/1:85,61:146:99:1306,0,1907 17 72791266 rs9910463 G A 4747.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4776,498,0 17 72848419 . C CCGG 3955.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.366;ClippingRankSum=0;DP=217;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.93;ReadPosRankSum=1.532;SOR=0.617 GT:AD:DP:GQ:PL 0/1:107,102:209:99:3993,0,4454 17 72848758 rs75018418 C CG 1492.73 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=43.9;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,34:34:99:1|1:72848758_C_CG:1530,108,0 17 72851133 rs689730 A G 3562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.07;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.263;SOR=0.785 GT:AD:DP:GQ:PL 0/1:140,153:293:99:3591,0,3182 17 72860654 rs2070921 G A 845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-0.729;SOR=0.681 GT:AD:DP:GQ:PL 0/1:53,36:89:99:874,0,1396 17 72862705 rs2070918 G A 1514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=-0.215;SOR=0.76 GT:AD:DP:GQ:PL 0/1:97,69:166:99:1543,0,2450 17 72888836 rs489152 G A 3590.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=2.079 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3619,333,0 17 72889676 . G GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC,GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC 10600.7 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.12;QD=100.01;SOR=4.174 GT:AD:DP:GQ:PL 1/2:0,55,51:106:99:10638,2727,2007,2823,0,2107 17 72927123 rs6501741 G T 8730.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.629;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=3.023;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.3;ReadPosRankSum=2.051;SOR=0.111 GT:AD:DP:GQ:PL 1/1:2,296:298:99:8759,869,0 17 72937851 rs9890664 G A 2937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=7.939;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=12.4;ReadPosRankSum=1.242;SOR=0.357 GT:AD:DP:GQ:PL 0/1:120,117:237:99:2966,0,3302 17 72938100 rs1542752 T C 2542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-1.377;SOR=0.563 GT:AD:DP:GQ:PL 0/1:115,108:223:99:2571,0,2987 17 72939446 rs4789110 C T 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.012;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8;ReadPosRankSum=-0.887;SOR=0.941 GT:AD:DP:GQ:PL 0/1:68,43:111:99:916,0,1674 17 72945334 rs8068514 T C 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.06;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.744;SOR=0.902 GT:AD:DP:GQ:PL 0/1:64,63:127:99:1796,0,1593 17 72948369 rs17853024 A G 3460.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.786 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3489,332,0 17 72949146 rs2307010 C T 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.713;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=-0.245;SOR=0.969 GT:AD:DP:GQ:PL 0/1:74,52:126:99:1227,0,1720 17 72952017 rs9906160 A G 3903.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3932,390,0 17 72957962 rs10719287 CT C 3166.73 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=36.82;SOR=1.192 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3204,259,0 17 72999773 rs3744204 C T 3889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.216;SOR=0.687 GT:AD:DP:GQ:PL 0/1:133,155:288:99:3918,0,3438 17 73000061 rs3744203 A G 2986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.731;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=1.32;SOR=0.706 GT:AD:DP:GQ:PL 0/1:96,116:212:99:3015,0,2035 17 73016621 rs1044228 C T 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.975;SOR=0.582 GT:AD:DP:GQ:PL 0/1:66,66:132:99:1537,0,1641 17 73043337 rs12952376 C T 1089.77 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.15;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1118,93,0 17 73089524 rs4789133 G A 1790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.126;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=0.388;SOR=0.604 GT:AD:DP:GQ:PL 0/1:113,71:184:99:1819,0,3000 17 73089706 rs4789134 G A 3644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.92;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=7.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-1.539;SOR=0.503 GT:AD:DP:GQ:PL 0/1:154,141:295:99:3673,0,4353 17 73089852 rs4788863 T C 8102.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=1.099 GT:AD:DP:GQ:PL 1/1:0,254:254:99:8131,762,0 17 73126746 rs10715821 GT G 6155.73 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=39.97;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,154:154:99:6193,464,0 17 73127683 rs4788867 T C 5486.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.05;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5515,498,0 17 73221439 rs2291029 C T 5594.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.15;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5623,522,0 17 73230856 rs9988 C T 3508.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3537,357,0 17 73242895 rs2242230 A G 1472.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.251 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1501,141,0 17 73257986 rs8075276 C T 3962.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.56;QD=29.35;SOR=1.256 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3991,403,0 17 73261868 rs35418346 G A 2795.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=1.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.982;SOR=0.808 GT:AD:DP:GQ:PL 0/1:107,121:228:99:2824,0,2427 17 73269530 rs1809352 A G 5710.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5739,552,0 17 73269676 rs4789164 C T 2061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.76;SOR=0.756 GT:AD:DP:GQ:PL 0/1:91,87:178:99:2090,0,2269 17 73279624 rs7213318 A G 5456.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5485,534,0 17 73328773 rs1529844 T C 1877.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1906,192,0 17 73488794 rs4078259 C T 3126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.89;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=2.238;SOR=0.864 GT:AD:DP:GQ:PL 0/1:109,127:236:99:3155,0,2667 17 73489567 rs4078474 C G 1638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=6.303;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.21;ReadPosRankSum=0.887;SOR=0.249 GT:AD:DP:GQ:PL 0/1:28,62:90:99:1667,0,667 17 73498483 rs7503373 T C 3327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.08;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=0.951;SOR=0.659 GT:AD:DP:GQ:PL 0/1:110,123:233:99:3356,0,2967 17 73498623 rs7502835 A G 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=0.947;SOR=0.672 GT:AD:DP:GQ:PL 0/1:107,97:204:99:2464,0,2756 17 73501752 rs8069700 G A 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=2.054;SOR=0.686 GT:AD:DP:GQ:PL 0/1:43,51:94:99:1253,0,1067 17 73512653 rs7216673 G T 5572.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.866;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.695;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.02;ReadPosRankSum=-0.596;SOR=0.734 GT:AD:DP:GQ:PL 1/1:1,191:192:99:5601,564,0 17 73517536 rs79508780 G A 1184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-1;SOR=0.809 GT:AD:DP:GQ:PL 0/1:71,55:126:99:1213,0,1695 17 73518203 rs9911502 G C 8322.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8351,792,0 17 73518284 rs6501820 G C 8778.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.7;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8807,759,0 17 73519413 rs8064529 C T 4922.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.81;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,177:177:99:4951,529,0 17 73552185 rs1671036 G A 3451.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3480,363,0 17 73625430 rs4788902 G A 8869.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.07;ReadPosRankSum=-0.74;SOR=0.756 GT:AD:DP:GQ:PL 1/1:2,293:295:99:8898,835,0 17 73625478 rs820191 T C 8605.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8634,864,0 17 73626922 rs56158987 G GT 4955.73 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.48;QD=43.86;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,113:113:99:4993,326,0 17 73626923 rs55982817 G GT 1860.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.017;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.48;MQRankSum=0.51;QD=19.59;ReadPosRankSum=-4.076;SOR=0.725 GT:AD:DP:GQ:PL 0/1:18,77:95:99:1898,0,225 17 73626924 rs113150921 G T 170.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.6;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.3;MQRankSum=-0.437;QD=1.78;ReadPosRankSum=4.848;SOR=0.812 GT:AD:DP:GQ:PL 0/1:79,17:96:99:199,0,1951 17 73627565 rs820197 A G 5825.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.191 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5854,552,0 17 73698557 rs820232 C T 1349.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.12;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1378,143,0 17 73702402 rs820229 T C 3388.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3417,309,0 17 73725481 rs61751843 C T 1732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.267;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=0.717;SOR=0.665 GT:AD:DP:GQ:PL 0/1:120,76:196:99:1761,0,3100 17 73750859 rs8669 C G 2953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=1.211;SOR=0.753 GT:AD:DP:GQ:PL 0/1:99,120:219:99:2982,0,2418 17 73753503 rs871443 T C 6376.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.53;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6405,588,0 17 73781075 . GCC G,GC 1127.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=1.86;ClippingRankSum=0;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=23.49;ReadPosRankSum=0.767;SOR=0.426 GT:AD:DP:GQ:PL 1/2:3,14,31:48:99:1165,703,767,301,0,244 17 73812909 rs9908146 A G 7492.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7521,743,0 17 73816026 rs11868471 A G 7663.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7692,758,0 17 73819525 rs8078208 C T 3042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.235;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.433;SOR=0.708 GT:AD:DP:GQ:PL 0/1:123,124:247:99:3071,0,3079 17 73824121 rs7210574 T C 4943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.929;ClippingRankSum=0;DB;DP=389;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=1.228;SOR=0.623 GT:AD:DP:GQ:PL 0/1:191,197:388:99:4972,0,4649 17 73827205 rs1135688 T C 3071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=6.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=0.981;SOR=0.56 GT:AD:DP:GQ:PL 0/1:118,129:247:99:3100,0,2799 17 73830996 rs17581728 C T 3164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.477;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.58;ReadPosRankSum=1.424;SOR=1.103 GT:AD:DP:GQ:PL 0/1:98,119:217:99:3193,0,2443 17 73836162 rs7223416 C G 2276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=1.218;SOR=0.697 GT:AD:DP:GQ:PL 0/1:106,96:202:99:2305,0,2823 17 73839366 rs3744009 C T 1989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.42;ReadPosRankSum=-1.087;SOR=0.767 GT:AD:DP:GQ:PL 0/1:61,77:138:99:2018,0,1497 17 73844748 rs2290771 A G 913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.962;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-1.582;SOR=0.733 GT:AD:DP:GQ:PL 0/1:33,36:69:99:942,0,709 17 73871467 rs3744017 G A 747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=0.497;SOR=0.594 GT:AD:DP:GQ:PL 0/1:40,34:74:99:776,0,977 17 73874012 rs3903010 T G 5699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.129;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.54;ReadPosRankSum=-0.582;SOR=0.724 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,171:325:99:0|1:73874012_T_G:5728,0,5112 17 73874071 rs4600514 G A 5038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.5;ReadPosRankSum=-0.17;SOR=0.585 GT:AD:DP:GQ:PGT:PID:PL 0/1:141,147:288:99:0|1:73874012_T_G:5067,0,4810 17 73874138 rs4072479 G C 4971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=0.424;SOR=0.675 GT:AD:DP:GQ:PL 0/1:163,184:347:99:5000,0,4592 17 73874452 . G A 3382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.781;ClippingRankSum=0;DP=311;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.346;SOR=0.855 GT:AD:DP:GQ:PL 0/1:171,139:310:99:3411,0,4573 17 73886888 rs3760128 A G 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=2.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=2.766;SOR=0.884 GT:AD:DP:GQ:PL 0/1:100,98:198:99:2359,0,2479 17 73888354 rs34974290 G A 2211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=0.46;SOR=0.609 GT:AD:DP:GQ:PL 0/1:111,92:203:99:2240,0,2801 17 73888423 rs7222755 A G 4581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.601;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.18;ReadPosRankSum=0.944;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 0/1:131,121:252:99:0|1:73888423_A_G:4610,0,5328 17 73888427 rs7222757 A C 4510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.284;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.19;ReadPosRankSum=1.586;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 0/1:131,117:248:99:0|1:73888423_A_G:4539,0,5378 17 73897046 rs9902371 A G 4173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=4.987;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.025;QD=21.08;ReadPosRankSum=-1.015;SOR=0.506 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,110:198:99:0|1:73897033_A_AC:4202,0,4455 17 73900688 rs3744015 T C 2477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-1.265;SOR=0.689 GT:AD:DP:GQ:PL 0/1:136,109:245:99:2506,0,3370 17 73922941 rs2305913 T C 1672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.242;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=-0.973;SOR=0.669 GT:AD:DP:GQ:PL 0/1:105,75:180:99:1701,0,2615 17 73926121 rs1135889 C A 854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=13.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=-0.494;SOR=2.553 GT:AD:DP:GQ:PL 0/1:28,31:59:99:883,0,750 17 73949540 rs1135640 G C 1943.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.681;SOR=0.704 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1972,0,2072 17 74076415 rs2257020 G A 6573.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6602,674,0 17 74077497 rs8836 G C 9148.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,291:291:99:9177,873,0 17 74079838 rs2665986 A G 3296.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3325,320,0 17 74085012 rs2084666 G A 3805.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.25;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3834,354,0 17 74094105 rs7208391 C G 3800.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.77;SOR=1.569 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3829,348,0 17 74152366 rs881502 A G 2409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.099;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=1.668;SOR=0.994 GT:AD:DP:GQ:PL 0/1:87,89:176:99:2438,0,2117 17 74163821 rs2289603 G A 3196.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3225,335,0 17 74261677 rs2585751 T C 8934.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8963,852,0 17 74277039 rs72868908 G A 6118.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6147,606,0 17 74286173 rs17509527 A G 2577.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2606,261,0 17 74381567 rs346803 G A 9195.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,309:309:99:9224,924,0 17 74383475 rs3744037 T C 3002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.463;SOR=0.562 GT:AD:DP:GQ:PL 0/1:136,130:266:99:3031,0,3261 17 74401405 rs11290311 AG A 1684.73 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.69;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1722,151,0 17 74462234 rs58453332 GA G 823.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=1.001;QD=17.16;ReadPosRankSum=0.919;SOR=0.811 GT:AD:DP:GQ:PL 0/1:23,25:48:99:861,0,784 17 74475024 rs3744045 G A 11237.8 PASS AC=2;AF=1;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,380:380:99:11266,1139,0 17 74475975 rs3809694 C A 1781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=1.371;SOR=0.791 GT:AD:DP:GQ:PL 0/1:71,78:149:99:1810,0,1757 17 74477620 rs12943385 C T 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=1.281;SOR=0.573 GT:AD:DP:GQ:PL 0/1:90,73:163:99:1656,0,2165 17 74524651 rs4238995 T G 3339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=33.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.58;ReadPosRankSum=-0.896;SOR=1.948 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,89:190:99:0|1:74524651_T_G:3368,0,4525 17 74524652 rs8077736 T G 3339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.765;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=31.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.67;ReadPosRankSum=-0.189;SOR=1.92 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,88:189:99:0|1:74524651_T_G:3368,0,4525 17 74563653 rs2241918 A G 794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.237;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=0.432;SOR=0.752 GT:AD:DP:GQ:PL 0/1:24,31:55:99:823,0,610 17 74684598 rs4788942 C T 3175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.689;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.317;SOR=0.743 GT:AD:DP:GQ:PL 0/1:158,135:293:99:3204,0,4298 17 74706922 rs112964240 T C 64.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.383;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=8.538;MLEAC=1;MLEAF=0.5;MQ=43.4;MQRankSum=-2.395;QD=2.16;ReadPosRankSum=-1.046;SOR=2.891 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,5:30:93:0|1:74706922_T_C:93,0,699 17 74707008 rs113539992 T G 405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.5;MQ=53.59;MQRankSum=-0.026;QD=5.8;ReadPosRankSum=1.009;SOR=0.534 GT:AD:DP:GQ:PL 0/1:44,26:70:99:434,0,911 17 74732507 rs237058 A G 5504.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=1.212 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5533,518,0 17 74733099 rs237057 G A 8667.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8696,849,0 17 74878259 rs571264 G A 2933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.39;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.614;QD=9.78;ReadPosRankSum=1.986;SOR=0.541 GT:AD:DP:GQ:PL 0/1:169,131:300:99:2962,0,3933 17 74922706 rs33966966 C T 1682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.348;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=7.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=-0.751;SOR=1.195 GT:AD:DP:GQ:PL 0/1:120,74:194:99:1711,0,2956 17 74928758 rs79286496 C T 3668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=1.13;SOR=0.727 GT:AD:DP:GQ:PL 0/1:153,158:311:99:3697,0,3745 17 74936576 rs8081793 G A 2894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.592;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=0.279;SOR=0.746 GT:AD:DP:GQ:PL 0/1:129,122:251:99:2923,0,2967 17 74942478 rs8067984 C T 3774.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3803,404,0 17 74944709 rs9894270 T C 3364.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.31;SOR=1.368 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3393,303,0 17 75190846 rs673918 A C 5126.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=1.228 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5155,491,0 17 75190962 rs674402 C T 2149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.731;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=6.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-2.57;SOR=1.153 GT:AD:DP:GQ:PL 0/1:108,94:202:99:2178,0,2541 17 75303298 rs4789439 T C 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.661;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.535;SOR=0.757 GT:AD:DP:GQ:PL 0/1:73,79:152:99:1773,0,1560 17 75369578 rs7217986 T C 4451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.029;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.218;SOR=0.694 GT:AD:DP:GQ:PL 0/1:190,180:370:99:4480,0,4591 17 75401190 rs2164449 G A 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=1.703;SOR=0.495 GT:AD:DP:GQ:PL 0/1:42,63:105:99:1495,0,1024 17 75494705 rs2627223 A G 2260.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=27.91;SOR=1.416 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2289,243,0 17 75494746 rs1059485 A G 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.718;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.96;QD=12.57;ReadPosRankSum=-0.49;SOR=0.884 GT:AD:DP:GQ:PL 0/1:33,38:71:99:921,0,567 17 76113872 rs143140501 G A 3026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=1.693;SOR=0.728 GT:AD:DP:GQ:PL 0/1:176,148:324:99:3055,0,4029 17 76129636 rs417780 T C 3010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.311;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-1.722;SOR=0.875 GT:AD:DP:GQ:PL 0/1:125,121:246:99:3039,0,3072 17 76130575 rs7208422 A T 5707.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.777 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5736,586,0 17 76131070 rs12452890 G A 5769.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5798,562,0 17 76134828 rs7221365 C A 8897.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.953;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=3.277;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.46;ReadPosRankSum=1.519;SOR=0.429 GT:AD:DP:GQ:PL 1/1:1,301:302:99:8926,892,0 17 76137198 rs369764 T G 5786.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.04;SOR=1.799 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5815,510,0 17 76143009 rs7217374 G A 3699.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.2;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3728,406,0 17 76157266 rs4071641 T C 4727.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4756,471,0 17 76162134 rs3644 C T 834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.434;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.39;ReadPosRankSum=-1.127;SOR=1.056 GT:AD:DP:GQ:PL 0/1:29,29:58:99:863,0,763 17 76167047 rs1062668 C T 2887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-1.323;QD=11.55;ReadPosRankSum=-0.729;SOR=0.713 GT:AD:DP:GQ:PL 0/1:117,133:250:99:2916,0,2626 17 76178748 rs1143697 T C 1901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.295;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=1.029;SOR=0.715 GT:AD:DP:GQ:PL 0/1:84,78:162:99:1930,0,2029 17 76183043 rs1071664 A G 2286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-0.922;SOR=0.618 GT:AD:DP:GQ:PL 0/1:83,92:175:99:2315,0,2136 17 76187160 rs17640750 C T 986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.086;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.096;SOR=0.545 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1015,0,1276 17 76219591 rs2071214 G A 5945.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5974,609,0 17 76228088 rs8068943 T A 4015.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.58;SOR=1.129 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4044,456,0 17 76229983 rs61730389 C T 1000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.94;ReadPosRankSum=0.324;SOR=0.609 GT:AD:DP:GQ:PL 0/1:67,45:112:99:1029,0,1752 17 76230693 rs79885699 T G 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.884;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=2.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.689;SOR=0.898 GT:AD:DP:GQ:PL 0/1:115,116:231:99:2677,0,2544 17 76230729 rs11077350 T C 6635.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.6;ReadPosRankSum=0.898;SOR=0.728 GT:AD:DP:GQ:PL 1/1:2,230:232:99:6664,646,0 17 76394449 rs2292644 C T 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.404;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=1.308;SOR=0.693 GT:AD:DP:GQ:PL 0/1:41,41:82:99:952,0,924 17 76395421 rs2292643 G A 1509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.936;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.25;ReadPosRankSum=2.269;SOR=0.774 GT:AD:DP:GQ:PGT:PID:PL 0/1:58,41:99:99:0|1:76395421_G_A:1538,0,3428 17 76395430 rs2292642 C T 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.78;ReadPosRankSum=2.309;SOR=0.896 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,48:119:99:0|1:76395421_G_A:1668,0,3666 17 76423097 rs2271613 G A 5534.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5563,581,0 17 76433898 rs12941494 T C 6150.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=1.231 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6179,599,0 17 76449505 rs2289751 G C 5624.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5653,588,0 17 76451921 rs8069561 A G 4245.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.41;ReadPosRankSum=1.68;SOR=0.598 GT:AD:DP:GQ:PL 1/1:1,130:131:99:4274,357,0 17 76456352 rs623336 T C 3714.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=29.02;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3743,384,0 17 76462770 rs691225 G A 7238.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7267,750,0 17 76464681 rs137998969 C T 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=0.42;SOR=0.604 GT:AD:DP:GQ:PL 0/1:111,100:211:99:2322,0,2797 17 76471366 rs61746438 G A 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-3.082;SOR=0.775 GT:AD:DP:GQ:PL 0/1:85,80:165:99:2181,0,2253 17 76472768 rs7405830 G A 2466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.075;SOR=0.753 GT:AD:DP:GQ:PL 0/1:90,104:194:99:2495,0,2320 17 76481693 rs11872051 C G 6422.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6451,644,0 17 76482435 rs61743860 C T 3477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=2.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.821;SOR=0.648 GT:AD:DP:GQ:PL 0/1:149,151:300:99:3506,0,3547 17 76491127 rs691652 T C 11814.8 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.945 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,264:264:99:1|1:76491127_T_C:11843,795,0 17 76491128 rs606944 G C 11814.8 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.945 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,264:264:99:1|1:76491127_T_C:11843,795,0 17 76496492 rs2028734 A G 5997.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6026,609,0 17 76497920 rs690844 C A 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.882;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=1.325;SOR=0.585 GT:AD:DP:GQ:PL 0/1:121,120:241:99:2869,0,3157 17 76498692 rs930571 C T 3920.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.519 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3949,384,0 17 76503593 rs9896398 T C 2728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.074;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.756;SOR=0.758 GT:AD:DP:GQ:PL 0/1:119,110:229:99:2757,0,2761 17 76503624 rs626439 C T 2921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.075;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.892;SOR=0.668 GT:AD:DP:GQ:PL 0/1:111,123:234:99:2950,0,2946 17 76506607 rs867654 G A 1621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=1.196;SOR=0.572 GT:AD:DP:GQ:PL 0/1:76,75:151:99:1650,0,1964 17 76511089 rs61736352 C T 2128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=-0.159;SOR=0.681 GT:AD:DP:GQ:PL 0/1:61,87:148:99:2157,0,1433 17 76525565 rs4273108 A G 2349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.138;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-1.258;SOR=0.555 GT:AD:DP:GQ:PL 0/1:86,93:179:99:2378,0,2084 17 76528591 rs11868065 C T 3015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.434;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.719;SOR=0.732 GT:AD:DP:GQ:PL 0/1:137,131:268:99:3044,0,3200 17 76528790 rs11651537 A G 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.092;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=1.583;SOR=0.915 GT:AD:DP:GQ:PL 0/1:71,70:141:99:1848,0,1625 17 76528831 rs11077379 G A 1422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.157;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=6.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-0.144;SOR=1.333 GT:AD:DP:GQ:PL 0/1:57,53:110:99:1451,0,1552 17 76535948 rs7221209 T C 1070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.105;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.93;ReadPosRankSum=0.869;SOR=0.643 GT:AD:DP:GQ:PL 0/1:86,49:135:99:1099,0,2090 17 76557862 rs894966 T C 6963.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.09;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6992,672,0 17 76565341 rs72920970 G A 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.675;SOR=0.427 GT:AD:DP:GQ:PL 0/1:49,47:96:99:1202,0,1361 17 76567013 rs12948559 C T 564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=-0.847;SOR=0.726 GT:AD:DP:GQ:PL 0/1:34,32:66:99:593,0,856 17 76567364 . C T 916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.168;SOR=0.651 GT:AD:DP:GQ:PL 0/1:45,44:89:99:945,0,1122 17 76567707 rs894968 T C 6921.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,234:234:99:6950,702,0 17 76567883 rs4969148 G C 1098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=0.918;SOR=0.999 GT:AD:DP:GQ:PL 0/1:70,50:120:99:1127,0,1701 17 76794981 rs2279308 A G 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=4.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.638;SOR=0.414 GT:AD:DP:GQ:PL 0/1:87,78:165:99:1809,0,2261 17 76798548 rs71964596 TTTTTTC T 3651.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.009;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=2.585;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=2.595;QD=19.53;ReadPosRankSum=-0.859;SOR=0.926 GT:AD:DP:GQ:PL 0/1:90,97:187:99:3689,0,4849 17 76799795 rs1057040 G A 3496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.02;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.723;SOR=0.478 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,116:279:99:0|1:76799795_G_A:3525,0,8707 17 76799860 rs3088040 T C 5097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.32;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.16;ReadPosRankSum=0.791;SOR=0.774 GT:AD:DP:GQ:PGT:PID:PL 0/1:163,134:297:99:0|1:76799795_G_A:5126,0,10641 17 76799898 rs9302885 A G 4659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.992;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.32;ReadPosRankSum=-0.019;SOR=0.777 GT:AD:DP:GQ:PGT:PID:PL 0/1:139,130:269:99:0|1:76799795_G_A:4688,0,8572 17 76817090 rs3744793 C T 5745.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.36;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,210:210:99:5774,627,0 17 76969183 rs55684276 G A 2554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.056;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=10.19;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=1.836;SOR=0.738 GT:AD:DP:GQ:PL 0/1:102,105:207:99:2583,0,2426 17 76970879 rs3744166 A G 6573.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6602,636,0 17 76993546 rs8077024 A G 2001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.581;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.525;SOR=0.629 GT:AD:DP:GQ:PL 0/1:94,83:177:99:2030,0,2631 17 77040128 rs4789922 T C 2329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.001;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.345;SOR=0.692 GT:AD:DP:GQ:PL 0/1:116,91:207:99:2358,0,2795 17 77040185 rs4789853 G C 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.115;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.381;SOR=0.57 GT:AD:DP:GQ:PL 0/1:117,99:216:99:2369,0,2895 17 77042718 rs11077409 C T 2149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.699;SOR=0.782 GT:AD:DP:GQ:PL 0/1:109,99:208:99:2178,0,2626 17 77071040 rs56107536 C A 1627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=5.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.825;SOR=0.78 GT:AD:DP:GQ:PL 0/1:56,65:121:99:1656,0,1469 17 77073566 rs3744181 G A 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.293;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.027;SOR=0.881 GT:AD:DP:GQ:PL 0/1:85,63:148:99:1519,0,1999 17 77073776 rs62063818 A T 2092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=1.809;SOR=0.705 GT:AD:DP:GQ:PL 0/1:125,92:217:99:2121,0,3151 17 77073941 rs56353542 T C 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.733;SOR=0.511 GT:AD:DP:GQ:PL 0/1:60,51:111:99:1358,0,1752 17 77075667 rs3744183 T C 3443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=5.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.61;ReadPosRankSum=-0.51;SOR=0.945 GT:AD:DP:GQ:PGT:PID:PL 0/1:95,90:185:99:0|1:77075667_T_C:3472,0,8070 17 77075670 rs3744184 C T 3431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.25;ReadPosRankSum=0.208;SOR=0.95 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,89:188:99:0|1:77075667_T_C:3460,0,8133 17 77075673 rs3744185 A G 3462.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.32;ReadPosRankSum=0.684;SOR=0.92 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,90:189:99:0|1:77075667_T_C:3491,0,8130 17 77076302 rs62063824 G A 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=1.743;SOR=0.789 GT:AD:DP:GQ:PL 0/1:67,78:145:99:1955,0,1478 17 77076440 rs3744186 G T 2522.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.745;SOR=0.642 GT:AD:DP:GQ:PL 0/1:99,112:211:99:2551,0,2448 17 77078069 rs12937557 G A 2538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=0.313;SOR=0.806 GT:AD:DP:GQ:PL 0/1:106,108:214:99:2567,0,2521 17 77078109 rs1317421 A G 2772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.166;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.366;SOR=0.736 GT:AD:DP:GQ:PL 0/1:126,116:242:99:2801,0,3086 17 77079576 rs61756761 A G 1156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.47;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-1.317;SOR=0.744 GT:AD:DP:GQ:PL 0/1:63,51:114:99:1185,0,1424 17 77081788 rs4789879 G A 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.894;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.977;SOR=0.745 GT:AD:DP:GQ:PL 0/1:121,113:234:99:2552,0,3158 17 77093768 rs58352742 T C 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.288;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=2.23;SOR=0.409 GT:AD:DP:GQ:PL 0/1:41,35:76:99:1005,0,868 17 77704912 rs8074547 T C 2133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.32;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.017;QD=11.79;ReadPosRankSum=-3.019;SOR=0.644 GT:AD:DP:GQ:PL 0/1:93,88:181:99:2162,0,2193 17 77705045 rs8074728 T C 3342.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.195;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-2.451;QD=12.57;ReadPosRankSum=-0.323;SOR=0.818 GT:AD:DP:GQ:PL 0/1:132,134:266:99:3371,0,3134 17 77709339 rs11657217 C G 2597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.414;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=5.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.147;SOR=0.757 GT:AD:DP:GQ:PL 0/1:131,100:231:99:2626,0,3160 17 77768654 rs4889891 C A 2772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=1.385;SOR=0.837 GT:AD:DP:GQ:PL 0/1:79,111:190:99:2801,0,1958 17 77807917 . T TGCCGCC 5332.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.119;ClippingRankSum=0;DP=354;ExcessHet=3.0103;FS=2.36;MLEAC=1;MLEAF=0.5;MQ=60.76;MQRankSum=6.156;QD=15.82;ReadPosRankSum=0.59;SOR=0.825 GT:AD:DP:GQ:PL 0/1:197,140:337:99:5370,0,9098 17 77808240 . CGTG C 39.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.295;ClippingRankSum=0;DP=196;ExcessHet=3.0103;FS=7.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.38;ReadPosRankSum=-0.596;SOR=0.098 GT:AD:DP:GQ:PL 0/1:95,9:104:77:77,0,3619 17 77917910 rs8071927 C T 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.92;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.805;SOR=0.871 GT:AD:DP:GQ:PL 0/1:99,77:176:99:1848,0,2485 17 77984141 rs35922784 C T 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=4.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.188;SOR=0.942 GT:AD:DP:GQ:PL 0/1:143,111:254:99:2680,0,3931 17 78013724 rs2289527 G C 3192.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3221,303,0 17 78021214 rs7212525 T C 1241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-1.251;SOR=0.475 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1270,0,1521 17 78055757 rs61749058 C T 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.81;ReadPosRankSum=1.902;SOR=0.841 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,66:140:99:0|1:78055757_C_T:2522,0,3935 17 78055758 rs35578653 T G 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.784;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.35;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.94;ReadPosRankSum=1.775;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,66:139:99:0|1:78055757_C_T:2522,0,3935 17 78064015 rs4889953 G C 4939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.688;ClippingRankSum=0;DB;DP=458;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=57.25;MQRankSum=-3.611;QD=11.38;ReadPosRankSum=0.185;SOR=0.755 GT:AD:DP:GQ:PL 0/1:226,208:434:99:4968,0,5058 17 78064064 rs7207166 G A 15790.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.2;ClippingRankSum=0;DB;DP=501;ExcessHet=3.0103;FS=4.34;MLEAC=2;MLEAF=1;MQ=55.37;MQRankSum=-1.55;QD=31.58;ReadPosRankSum=3.732;SOR=0.853 GT:AD:DP:GQ:PL 1/1:56,444:500:99:15819,1062,0 17 78064145 rs10693712 A ACAC 7115.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.244;ClippingRankSum=0;DB;DP=532;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=57.88;MQRankSum=-5.221;QD=13.43;ReadPosRankSum=4.085;SOR=0.753 GT:AD:DP:GQ:PL 0/1:317,213:530:99:7153,0,10404 17 78064216 . CAGCACGTGCATGAACAACACAGGACACACACA C 2144.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.539;ClippingRankSum=0;DP=675;ExcessHet=3.0103;FS=2.96;MLEAC=1;MLEAF=0.5;MQ=59.29;MQRankSum=-2.51;QD=7.13;ReadPosRankSum=0.82;SOR=0.911 GT:AD:DP:GQ:PL 0/1:223,78:301:99:2182,0,10915 17 78071052 rs12952612 T C 3653.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3682,369,0 17 78073355 rs56407805 A G 1686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=1.067;SOR=0.486 GT:AD:DP:GQ:PL 0/1:88,74:162:99:1715,0,2218 17 78073562 rs2304854 A G 5119.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5148,522,0 17 78073589 rs2304853 T C 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.274;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.32;ReadPosRankSum=-0.441;SOR=0.515 GT:AD:DP:GQ:PL 0/1:75,43:118:99:1010,0,2098 17 78078709 rs1800300 T C 8067.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,244:244:99:8096,732,0 17 78079544 rs3816256 C G 3942.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3971,375,0 17 78079597 rs1042393 A G 4419.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4448,432,0 17 78079643 rs1800301 C T 4881.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4910,476,0 17 78079669 rs1042395 G A 4884.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4913,493,0 17 78081526 rs3071247 A AGCAGCGG 13134.7 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=62.72;QD=43.21;SOR=0.833 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,304:304:99:1|1:78081526_A_AGCAGCGG:13172,932,0 17 78081707 rs2252455 G A 5416.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5445,572,0 17 78082504 rs1800304 G A 6729.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.87;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6758,651,0 17 78083726 rs2278619 A G 2328.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2357,243,0 17 78084507 rs2304844 G C 3505.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3534,333,0 17 78086846 rs2304836 A G 4928.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.86;SOR=1.371 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4957,450,0 17 78087109 rs1800310 A G 6826.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,231:231:99:6855,692,0 17 78090928 rs2304832 G A 3570.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=1.441 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3599,360,0 17 78091405 rs1126690 G A 4330.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4359,448,0 17 78092063 rs1042397 G A 6581.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6610,675,0 17 78157995 rs4889990 G A 2505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.453;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.889;SOR=0.732 GT:AD:DP:GQ:PL 0/1:126,115:241:99:2534,0,3200 17 78165202 rs74951924 C T 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.452;SOR=0.912 GT:AD:DP:GQ:PL 0/1:111,103:214:99:2402,0,2786 17 78169004 rs62074378 G A 3399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.162;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.482;SOR=0.778 GT:AD:DP:GQ:PL 0/1:165,150:315:99:3428,0,3707 17 78176233 rs8069255 T A 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.87;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.817;SOR=0.839 GT:AD:DP:GQ:PL 0/1:88,84:174:99:2192,0,2328 17 78177695 rs9905662 A C 822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.214;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.99;ReadPosRankSum=0.036;SOR=0.888 GT:AD:DP:GQ:PL 0/1:61,42:103:99:851,0,1351 17 78178830 rs11653893 A G 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.956;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=1.375;SOR=0.603 GT:AD:DP:GQ:PL 0/1:71,80:151:99:1976,0,1594 17 78178893 rs11652075 C T 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.045;SOR=0.662 GT:AD:DP:GQ:PL 0/1:93,119:212:99:2723,0,2110 17 78219065 rs7406843 C A 1792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.239;SOR=0.727 GT:AD:DP:GQ:PL 0/1:90,83:173:99:1821,0,2203 17 78223103 rs8064518 C A 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-0.266;SOR=0.706 GT:AD:DP:GQ:PL 0/1:137,110:247:99:2500,0,3314 17 78298938 rs6565674 A G 5736.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5765,573,0 17 78302157 rs8082521 C A 913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.51;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.16;ReadPosRankSum=0.835;SOR=0.827 GT:AD:DP:GQ:PL 0/1:66,46:112:99:942,0,1695 17 78305871 rs10782008 G A 2640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-0.098;SOR=0.803 GT:AD:DP:GQ:PL 0/1:77,113:190:99:2669,0,1708 17 78306102 rs9913636 G C 3505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.85;ReadPosRankSum=0.893;SOR=0.552 GT:AD:DP:GQ:PL 0/1:109,127:236:99:3534,0,2686 17 78306280 rs8074015 A G 2488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.406;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=1.047;SOR=0.7 GT:AD:DP:GQ:PL 0/1:92,100:192:99:2517,0,2294 17 78306308 rs9908287 C G 2582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.177;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.695;SOR=0.809 GT:AD:DP:GQ:PL 0/1:93,105:198:99:2611,0,2248 17 78311508 rs4890009 G A 2216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.485;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-1.371;SOR=0.557 GT:AD:DP:GQ:PL 0/1:127,100:227:99:2245,0,3418 17 78319136 rs9674961 G A 2264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.589;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=0.013;SOR=0.723 GT:AD:DP:GQ:PL 0/1:106,95:201:99:2293,0,2871 17 78319380 rs4890012 G C 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.313;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=3.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-1.355;SOR=0.925 GT:AD:DP:GQ:PL 0/1:94,101:195:99:2489,0,2234 17 78327358 rs7216493 G A 2250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=-1.598;SOR=0.699 GT:AD:DP:GQ:PL 0/1:121,107:228:99:2279,0,2840 17 78354661 rs4889848 C T 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.205;SOR=0.715 GT:AD:DP:GQ:PL 0/1:110,83:193:99:1903,0,2811 17 78395734 rs34933300 G A 2640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=1.123;SOR=0.861 GT:AD:DP:GQ:PL 0/1:106,111:217:99:2669,0,2532 17 78444658 rs12943620 T G 1539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.536;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=0.521;SOR=0.72 GT:AD:DP:GQ:PL 0/1:86,66:152:99:1568,0,2115 17 78444679 rs28364735 T C 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.871;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-1.785;SOR=0.85 GT:AD:DP:GQ:PL 0/1:84,71:155:99:1735,0,2098 17 78445702 rs1131609 A G 1490.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.297;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.265;SOR=0.893 GT:AD:DP:GQ:PL 0/1:69,61:130:99:1519,0,1677 17 78449948 rs144443274 C T 1504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.789;SOR=1.045 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1533,0,1572 17 78820374 rs2589156 G A 3598.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.06;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3627,397,0 17 78865546 rs2289764 T C 1814.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1843,168,0 17 78971150 . C CCCCCAGGACTGAGCACAGTCACTCAGGCAGTGGGA 1984.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=0.65;MLEAC=1;MLEAF=0.5;MQ=63.29;MQRankSum=9.328;QD=14.7;ReadPosRankSum=-1.115;SOR=0.771 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,56:135:99:0|1:78971150_C_CCCCCAGGACTGAGCACAGTCACTCAGGCAGTGGGA:2022,0,4282 17 78971156 rs60323363 G A 1427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.285;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=62.37;MQRankSum=7.707;QD=12.1;ReadPosRankSum=-1.605;SOR=0.81 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,38:118:99:0|1:78971150_C_CCCCCAGGACTGAGCACAGTCACTCAGGCAGTGGGA:1456,0,4413 17 79031773 rs374566667 ACC A 357.73 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=44.72;SOR=4.407 GT:AD:DP:GQ:PL 1/1:0,8:18:36:320,36,0 17 79072011 rs72634327 A G 2370.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.87;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2399,210,0 17 79093270 rs55713566 C T 4123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.5;MQ=61.94;MQRankSum=-1.031;QD=13.7;ReadPosRankSum=0.013;SOR=0.757 GT:AD:DP:GQ:PL 0/1:129,172:301:99:4152,0,3164 17 79093822 rs36000545 A G 7466.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7495,722,0 17 79095144 rs8073904 G A 8832.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.21;ReadPosRankSum=1.987;SOR=0.259 GT:AD:DP:GQ:PL 1/1:1,282:283:99:8861,811,0 17 79095629 rs7503604 C A 8552.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8581,808,0 17 79166136 rs113590232 G A 2103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=1.559;SOR=0.442 GT:AD:DP:GQ:PL 0/1:101,96:197:99:2132,0,2401 17 79171967 rs2659016 A G 8128.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8157,798,0 17 79173184 rs2659015 T C 6818.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=1.087 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6847,656,0 17 79173224 rs2725419 T C 8436.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8465,829,0 17 79174221 rs2466773 T C 3477.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=4.357;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.98;ReadPosRankSum=-0.838;SOR=1.198 GT:AD:DP:GQ:PL 1/1:1,119:120:99:3506,322,0 17 79182778 rs62075318 T C 4038.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4067,402,0 17 79202956 rs2048057 T C 10670.8 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.24;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,331:331:99:10699,992,0 17 79213420 rs367877316 T C 3259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.551;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=0.37;SOR=0.978 GT:AD:DP:GQ:PL 0/1:131,134:265:99:3288,0,3434 17 79219500 rs10569617 AATG A 13249.7 PASS AC=2;AF=1;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=44.46;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,298:298:99:13287,898,0 17 79220224 rs2725405 G C 13122.8 PASS AC=2;AF=1;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,414:414:99:13151,1242,0 17 79478019 rs1139405 G A 9815.77 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,324:324:99:9844,970,0 17 79478916 rs9910792 G T 9591.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.74;SOR=1.618 GT:AD:DP:GQ:PL 1/1:0,293:293:99:9620,879,0 17 79502218 rs186367879 G A 1327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-0.066;SOR=0.475 GT:AD:DP:GQ:PL 0/1:47,56:103:99:1356,0,1198 17 79504073 rs143561119 C T 1212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.97;SOR=0.634 GT:AD:DP:GQ:PL 0/1:71,52:123:99:1241,0,1907 17 79508400 rs14422 T C 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.497;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=0.352;SOR=0.836 GT:AD:DP:GQ:PL 0/1:103,72:175:99:1587,0,2320 17 79511135 rs8077430 A G 1308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.438;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-1.806;SOR=0.596 GT:AD:DP:GQ:PL 0/1:75,57:132:99:1337,0,1799 17 79514129 rs11552304 G A 4016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=1.37;SOR=0.606 GT:AD:DP:GQ:PL 0/1:156,161:317:99:4045,0,4020 17 79526402 rs4073997 G C 5802.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5831,602,0 17 79571637 rs11541223 C G 1828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.194;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=0.458;SOR=0.75 GT:AD:DP:GQ:PL 0/1:89,79:168:99:1857,0,2040 17 79573860 rs10695650 C CTTAA 1833.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.947;QD=20.6;ReadPosRankSum=-0.325;SOR=1.083 GT:AD:DP:GQ:PL 0/1:41,48:89:99:1871,0,2250 17 79589242 rs6565604 G A 1197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.525;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.761;SOR=0.428 GT:AD:DP:GQ:PL 0/1:43,52:95:99:1226,0,867 17 79596811 rs9894429 C T 826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.173;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=3.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=-0.907;SOR=0.365 GT:AD:DP:GQ:PL 0/1:51,42:93:99:855,0,1300 17 79612049 . ACAGGCCACCCACCTCAGGCTGCCTAGGTCCAGTGCC A 3114.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.665;ClippingRankSum=0;DP=276;ExcessHet=3.0103;FS=5.187;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=3.828;QD=11.37;ReadPosRankSum=3.534;SOR=1.019 GT:AD:DP:GQ:PL 0/1:184,90:274:99:3152,0,7829 17 79612161 rs6565616 C T 2201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.243;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=5.405;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=3.171;QD=9.17;ReadPosRankSum=0.236;SOR=0.448 GT:AD:DP:GQ:PL 0/1:149,91:240:99:2230,0,4001 17 79612333 rs6565617 G A 3768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.371;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=2.651;SOR=0.694 GT:AD:DP:GQ:PL 0/1:163,169:332:99:3797,0,4109 17 79612382 rs7210026 T C 5261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.49;ReadPosRankSum=-1.218;SOR=0.62 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,146:270:99:0|1:79612382_T_C:5290,0,5095 17 79612397 rs6420484 A G 4889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.781;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.88;ReadPosRankSum=-1.258;SOR=0.625 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,124:246:99:0|1:79612382_T_C:4918,0,5189 17 79612413 rs7210043 T C 4590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.29;ReadPosRankSum=-1.125;SOR=0.66 GT:AD:DP:GQ:PGT:PID:PL 0/1:130,121:251:99:0|1:79612382_T_C:4619,0,5426 17 79612443 rs7210193 T C 3113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=3.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.67;SOR=0.503 GT:AD:DP:GQ:PL 0/1:129,121:250:99:3142,0,3426 17 79614932 rs34872037 TTAAC T 3011.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.32;MQRankSum=2.338;QD=18.03;ReadPosRankSum=-2.808;SOR=0.654 GT:AD:DP:GQ:PL 0/1:86,81:167:99:3049,0,4776 17 79615225 rs7406494 G T 9602.77 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9631,953,0 17 79615309 rs7406516 G A 2975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.511;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=0.944;SOR=0.709 GT:AD:DP:GQ:PL 0/1:156,136:292:99:3004,0,4155 17 79637349 rs10438817 T C 4764.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4793,483,0 17 79663630 rs78814570 C T 3008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.206;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-2.194;SOR=0.667 GT:AD:DP:GQ:PL 0/1:157,123:280:99:3037,0,3846 17 79682558 rs2072700 T C 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.498;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=4.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=0.66;SOR=1.13 GT:AD:DP:GQ:PL 0/1:64,66:130:99:1791,0,1608 17 79687218 rs11150813 G A 3290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.166;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-2.852;SOR=0.857 GT:AD:DP:GQ:PL 0/1:122,137:259:99:3319,0,2656 17 79770740 rs5384 C T 4172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.401;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=-0.669;SOR=0.638 GT:AD:DP:GQ:PL 0/1:141,170:311:99:4201,0,3741 17 79872241 rs1879569 A G 9597.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.1;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,290:290:99:9626,871,0 17 79891147 rs61747618 T C 8534.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8563,816,0 17 79899432 rs111706382 G A 3428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.794;SOR=0.613 GT:AD:DP:GQ:PL 0/1:159,142:301:99:3457,0,3971 17 79935636 rs9906594 C G 2302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.751;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=5.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.217;SOR=0.928 GT:AD:DP:GQ:PL 0/1:89,94:183:99:2331,0,2086 17 79954544 rs8074498 T A 2622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.043;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=0.497;SOR=0.61 GT:AD:DP:GQ:PL 0/1:168,128:296:99:2651,0,4038 17 79967032 . C T 2674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0;DP=299;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=0.703;SOR=0.759 GT:AD:DP:GQ:PL 0/1:174,125:299:99:2703,0,4239 17 79967461 . G GGGGGCGACTGAGGCACAGCTCTGACGGGGCCCCCCTGAGGTCTACGGATGGGACGTA 2177.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0;DP=154;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.28;ReadPosRankSum=-2.958;SOR=0.818 GT:AD:DP:GQ:PL 0/1:68,58:126:99:2215,0,3962 17 79974731 rs13087 T C 3559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.924;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=0.448;SOR=0.72 GT:AD:DP:GQ:PL 0/1:128,140:268:99:3588,0,3174 17 79980756 rs3934983 C A 1716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.861;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.646;SOR=0.565 GT:AD:DP:GQ:PL 0/1:82,71:153:99:1745,0,2025 17 80006957 rs12948507 A C 1336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.85;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=1.673;SOR=0.586 GT:AD:DP:GQ:PL 0/1:52,53:105:99:1365,0,1257 17 80007887 rs9915228 A G 1955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.81;ReadPosRankSum=-0.606;SOR=0.576 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,54:104:99:0|1:80007887_A_G:1984,0,2715 17 80007897 rs9915742 G T 1688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.76;ReadPosRankSum=-0.46;SOR=0.717 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,44:90:99:0|1:80007887_A_G:1717,0,2638 17 80008392 rs9916764 G T 2255.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.064;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.13;ReadPosRankSum=0.35;SOR=0.586 GT:AD:DP:GQ:PL 0/1:97,89:186:99:2284,0,2406 17 80009156 rs28552909 T G 3013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.3;SOR=0.739 GT:AD:DP:GQ:PL 0/1:139,123:262:99:3042,0,3356 17 80014861 rs4969484 T G 4427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=3.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.63;SOR=0.687 GT:AD:DP:GQ:PL 0/1:166,185:351:99:4456,0,3958 17 80039028 rs4246445 A G 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.042;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=5.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-1.046;SOR=1.151 GT:AD:DP:GQ:PL 0/1:96,87:183:99:2359,0,2345 17 80039481 rs1140616 G A 1931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-3.489;SOR=1.052 GT:AD:DP:GQ:PL 0/1:109,81:190:99:1960,0,2864 17 80043349 rs17848939 C T 3037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.425;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=1.549;SOR=0.746 GT:AD:DP:GQ:PL 0/1:134,132:266:99:3066,0,3652 17 80043739 rs2229422 A G 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.127;SOR=0.483 GT:AD:DP:GQ:PL 0/1:65,81:146:99:1921,0,1572 17 80050554 rs10591316 CGG C 660.77 PASS AC=2;AF=1;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.71;SOR=5.892 GT:AD:DP:GQ:PL 1/1:0,18:18:55:689,55,0 17 80051183 rs2228309 A G 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.022;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.224;SOR=0.697 GT:AD:DP:GQ:PL 0/1:109,91:200:99:2104,0,2613 17 80059596 rs13949 T C 2757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.315;SOR=0.638 GT:AD:DP:GQ:PL 0/1:115,120:235:99:2786,0,2865 17 80059758 rs7225637 G A 1317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=-0.451;SOR=0.859 GT:AD:DP:GQ:PL 0/1:90,56:146:99:1346,0,2531 17 80085633 rs11077969 A G 2661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.744;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=1.051;SOR=0.655 GT:AD:DP:GQ:PL 0/1:100,98:198:99:2690,0,2387 17 80085703 rs7213172 G T 3274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-0.827;SOR=0.721 GT:AD:DP:GQ:PL 0/1:113,135:248:99:3303,0,2636 17 80086386 rs7406162 C T 4033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.34;ReadPosRankSum=0.511;SOR=0.703 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,102:189:99:0|1:80086386_C_T:4062,0,5093 17 80086389 rs7406163 C T 4076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.46;ReadPosRankSum=0.149;SOR=0.639 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,103:190:99:0|1:80086386_C_T:4105,0,5108 17 80086395 rs4625783 T C 3995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.37;ReadPosRankSum=-0.048;SOR=0.648 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,102:187:99:0|1:80086386_C_T:4024,0,5072 17 80091941 rs4789754 G A 2611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.053;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.408;SOR=0.741 GT:AD:DP:GQ:PL 0/1:107,110:217:99:2640,0,2466 17 80136418 rs7209474 C T 2405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-1.515;SOR=0.794 GT:AD:DP:GQ:PL 0/1:114,104:218:99:2434,0,2737 17 80146089 rs4789729 G A 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.179;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=2.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.444;SOR=0.913 GT:AD:DP:GQ:PL 0/1:97,88:185:99:2168,0,2354 17 80151881 rs4789722 G A 2621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.551;SOR=0.749 GT:AD:DP:GQ:PL 0/1:135,118:253:99:2650,0,3358 17 80159566 rs8072670 T C 2673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.755;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.615;SOR=0.712 GT:AD:DP:GQ:PL 0/1:122,103:225:99:2702,0,3105 17 80195582 rs9303026 T C 8462.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8491,797,0 17 80280865 rs11077986 G A 1965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.425;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=0.28;SOR=0.876 GT:AD:DP:GQ:PL 0/1:116,87:203:99:1994,0,2710 17 80373452 rs4789769 C T 3190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.759;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.996;SOR=0.787 GT:AD:DP:GQ:PL 0/1:134,134:268:99:3219,0,3057 17 80377690 rs1141463 T G 548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.214;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=8.948;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.95;ReadPosRankSum=-1.097;SOR=1.759 GT:AD:DP:GQ:PL 0/1:45,24:69:99:577,0,1013 17 80391684 rs4789773 A G 1746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.756;SOR=0.787 GT:AD:DP:GQ:PL 0/1:74,67:141:99:1775,0,1966 17 80394530 rs4789777 G T 1033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.165;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.34;ReadPosRankSum=-1.34;SOR=0.701 GT:AD:DP:GQ:PL 0/1:77,47:124:99:1062,0,1690 17 80545156 rs6502124 A G 2932.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=1.389 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2961,273,0 17 80574532 rs12950772 A G 2239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.231;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.34;ReadPosRankSum=-0.718;SOR=0.881 GT:AD:DP:GQ:PL 0/1:61,85:146:99:2268,0,1306 17 80585094 rs2291393 C T 1171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.808;SOR=0.762 GT:AD:DP:GQ:PL 0/1:62,58:120:99:1200,0,1350 17 80674643 rs2250000 C G 5358.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=1.172 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5387,525,0 17 80676946 rs111661651 A ACCACCCC 4171.73 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.86;SOR=2.085 GT:AD:DP:GQ:PL 1/1:0,93:93:99:4209,282,0 17 80696410 rs2253149 A C 6029.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6058,635,0 17 80708601 rs1056534 C G 1657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.598;SOR=0.899 GT:AD:DP:GQ:PL 0/1:64,69:133:99:1686,0,1765 17 80788465 rs12938126 T C 6880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0;DB;DP=504;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=-2.129;SOR=0.665 GT:AD:DP:GQ:PL 0/1:237,267:504:99:6909,0,5931 17 80788492 rs12948179 A G 6628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0;DB;DP=482;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=-0.798;SOR=0.922 GT:AD:DP:GQ:PL 0/1:223,259:482:99:6657,0,5552 17 80863857 rs2292971 T C 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.719;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=7.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.24;SOR=0.304 GT:AD:DP:GQ:PL 0/1:61,74:135:99:1892,0,1445 17 80878412 rs5822547 C CT 723.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.276;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=6.881;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=0.497;QD=16.08;ReadPosRankSum=-1.347;SOR=1.221 GT:AD:DP:GQ:PL 0/1:12,33:69:99:688,0,235 17 80887244 rs1127986 T C 5029.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.25;ReadPosRankSum=-1.157;SOR=0.697 GT:AD:DP:GQ:PL 0/1:156,197:353:99:5058,0,3886 17 80895253 rs8079398 G A 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=1.527;SOR=0.604 GT:AD:DP:GQ:PL 0/1:63,47:110:99:949,0,1435 17 80895745 rs3785520 T C 4885.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.207 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4914,480,0 17 80895769 rs3785521 A G 5768.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.083 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5797,555,0 17 80895933 rs3785522 A G 5366.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5395,510,0 17 80899281 rs9390 G A 4074.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=1.146 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4103,407,0 17 80904844 rs7225887 C T 1429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=-1.45;SOR=0.693 GT:AD:DP:GQ:PL 0/1:82,70:152:99:1458,0,1832 17 81006387 rs1143006 G A 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.044;SOR=0.79 GT:AD:DP:GQ:PL 0/1:86,63:149:99:1420,0,2064 17 81050982 rs7501742 G C 4959.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=41.33;SOR=0.91 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:81050982_G_C:4988,361,0 18 166819 rs563155 T C 730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=1.824;SOR=0.705 GT:AD:DP:GQ:PL 0/1:45,35:80:99:759,0,1074 18 203081 rs471274 A C 1507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.914;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.36;ReadPosRankSum=0.239;SOR=0.834 GT:AD:DP:GQ:PL 0/1:52,53:105:99:1536,0,1346 18 224184 rs631343 C G 530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-0.806;SOR=0.97 GT:AD:DP:GQ:PL 0/1:39,25:64:99:559,0,1021 18 252559 rs657138 G A 2363.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.56;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2392,266,0 18 264012 rs652504 G A 439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.101;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.47;ReadPosRankSum=-1.217;SOR=0.986 GT:AD:DP:GQ:PL 0/1:46,22:68:99:468,0,1122 18 334742 rs2305027 C T 2234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=-0.204;SOR=0.512 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,82:148:99:0|1:334742_C_T:2263,0,1753 18 334758 rs2305026 T C 6167.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.31;SOR=1.373 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,161:161:99:1|1:334742_C_T:6196,484,0 18 334994 rs2305025 A G 7319.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.1;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7348,684,0 18 335244 rs5822558 G GA 3416.73 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.52;QD=30.24;SOR=2.2 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3454,340,0 18 618124 rs518471 T C 927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.73;ReadPosRankSum=-0.098;SOR=0.559 GT:AD:DP:GQ:PL 0/1:27,36:63:99:956,0,677 18 649879 rs34918478 CT C 181.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=5.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.05;ReadPosRankSum=-0.017;SOR=0.516 GT:AD:DP:GQ:PL 0/1:24,12:54:99:219,0,541 18 691266 rs2612086 A G 1227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.906;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.82;SOR=0.808 GT:AD:DP:GQ:PL 0/1:60,51:111:99:1256,0,1386 18 706589 rs2612102 A G 1484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=0.718;SOR=0.839 GT:AD:DP:GQ:PL 0/1:43,65:108:99:1513,0,912 18 712356 rs3786350 G T 9404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.429;ClippingRankSum=0;DB;DP=464;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.5;MQ=58.69;MQRankSum=-2.105;QD=20.27;ReadPosRankSum=0.6;SOR=0.907 GT:AD:DP:GQ:PGT:PID:PL 0/1:215,249:464:99:0|1:712319_TCGG_T:9433,0,10301 18 724612 rs537141 A G 3712.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3741,357,0 18 907675 rs8192597 G A 7194.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.599 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7223,693,0 18 909561 rs2231187 A G 2429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.221;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=3.228;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-1.585;SOR=0.498 GT:AD:DP:GQ:PL 0/1:99,98:197:99:2458,0,2410 18 2539016 rs8084295 C G 3485.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3514,342,0 18 2547500 rs2677879 G T 1582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.372;SOR=0.877 GT:AD:DP:GQ:PL 0/1:69,69:138:99:1611,0,1742 18 2616457 rs9051 G C 683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.349;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-0.119;SOR=0.368 GT:AD:DP:GQ:PL 0/1:25,26:51:99:712,0,638 18 2705700 rs635132 A G 1715.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.81;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1744,191,0 18 2707619 rs2276092 G A 1297.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1326,123,0 18 2724930 rs633422 A T 1503.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.34;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1532,164,0 18 2763697 rs483547 C T 2732.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2761,293,0 18 2771516 rs300291 G T 2947.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2976,305,0 18 2885118 rs592120 C T 2448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.991;SOR=0.748 GT:AD:DP:GQ:PL 0/1:105,113:218:99:2477,0,2413 18 2891847 rs3826638 C T 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-1.423;SOR=0.699 GT:AD:DP:GQ:PL 0/1:132,116:248:99:2677,0,3245 18 2909831 rs607411 C G 5962.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=1.05 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5991,561,0 18 3067278 rs2230164 A G 2699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.634;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.688;SOR=0.813 GT:AD:DP:GQ:PL 0/1:118,107:225:99:2728,0,2849 18 3075712 rs2298539 C A 649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.667;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=4.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=-0.674;SOR=0.849 GT:AD:DP:GQ:PL 0/1:51,30:81:99:678,0,1243 18 3075746 rs1143657 G A 664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.39;ReadPosRankSum=0.055;SOR=0.841 GT:AD:DP:GQ:PL 0/1:57,33:90:99:693,0,1448 18 3075778 rs2298537 A C 640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.544;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-0.66;SOR=0.964 GT:AD:DP:GQ:PL 0/1:46,29:75:99:669,0,1038 18 3089522 rs948298 G T 2307.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2336,234,0 18 3100429 rs7232329 G A 800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.805;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.442;SOR=1.022 GT:AD:DP:GQ:PL 0/1:32,33:65:99:829,0,643 18 3134826 rs143030509 A C 1619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.88;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=6.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.201;SOR=0.319 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1648,0,1586 18 3168816 rs2230167 G A 1287.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.58;SOR=0.927 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1316,0,1720 18 3173964 rs2230163 G A 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.707;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=0.47;SOR=0.667 GT:AD:DP:GQ:PL 0/1:51,44:95:99:1095,0,1233 18 3174018 rs17183883 C T 998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.17;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.32;ReadPosRankSum=-0.085;SOR=0.854 GT:AD:DP:GQ:PL 0/1:37,38:75:99:1027,0,1044 18 3176040 rs8099021 C G 1522.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.19;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1551,167,0 18 3176063 rs2230162 C T 665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.909;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.509;SOR=0.641 GT:AD:DP:GQ:PL 0/1:35,30:65:99:694,0,775 18 3188976 rs1962519 A G 9854.77 PASS AC=2;AF=1;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,313:313:99:9883,937,0 18 3214918 rs7232679 G C 2053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.715;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.719;SOR=0.918 GT:AD:DP:GQ:PL 0/1:89,78:167:99:2082,0,2362 18 3277237 rs10853294 G T 2603.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=1.423 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2632,252,0 18 3452222 rs11571510 CT C 1866.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.144;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=0;QD=6.91;ReadPosRankSum=0.573;SOR=0.697 GT:AD:DP:GQ:PL 0/1:175,95:270:99:1904,0,6037 18 5197503 rs58012253 C CAAAAAAAAAAA 593.73 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.67;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,13:15:42:630,42,0 18 5292030 rs620652 A G 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.158;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=3.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.321;SOR=0.517 GT:AD:DP:GQ:PL 0/1:93,81:174:99:2023,0,2404 18 5410574 rs3817466 A G 3189.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3218,327,0 18 5433570 rs2272130 A C 1191.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.02;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.088;SOR=0.616 GT:AD:DP:GQ:PL 0/1:49,49:98:99:1220,0,1050 18 5956238 rs3737353 C T 3510.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3539,360,0 18 5960165 rs505559 G A 1728.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1757,174,0 18 6032282 . TAA T,TA 1200.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=21.07;ReadPosRankSum=1.034;SOR=1.092 GT:AD:DP:GQ:PL 1/2:4,20,33:67:99:1238,580,683,414,0,333 18 6889973 rs4239328 A G 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.82;ReadPosRankSum=-1.045;SOR=0.663 GT:AD:DP:GQ:PL 0/1:101,70:171:99:1537,0,2513 18 6890434 rs1116757 A G 651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=5.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.921;SOR=0.223 GT:AD:DP:GQ:PL 0/1:24,31:55:99:680,0,609 18 6898415 rs12185460 C T 575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=0.384;SOR=0.795 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,23:41:99:0|1:6898415_C_T:604,0,519 18 6912143 rs1056408 A C 792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.186;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.707;SOR=0.941 GT:AD:DP:GQ:PL 0/1:36,34:70:99:821,0,797 18 6943264 rs2016639 G A 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.497;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=3.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.52;ReadPosRankSum=2.048;SOR=0.782 GT:AD:DP:GQ:PL 0/1:145,86:231:99:1765,0,3256 18 6947143 rs2155697 A C 2067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.045;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.644;SOR=0.915 GT:AD:DP:GQ:PL 0/1:94,90:184:99:2096,0,2193 18 6977719 rs10164200 A G 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.529;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.231;SOR=0.444 GT:AD:DP:GQ:PL 0/1:93,83:176:99:2073,0,2242 18 6977844 rs671871 A G 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=0.509;SOR=0.501 GT:AD:DP:GQ:PL 0/1:102,82:184:99:1806,0,2487 18 6980523 rs607230 T C 1694.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1723,174,0 18 6985270 rs11664063 C T 1806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.168;SOR=0.705 GT:AD:DP:GQ:PL 0/1:74,79:153:99:1835,0,1732 18 6985506 rs616722 T C 4537.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.06;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,103:103:99:4566,316,0 18 6985507 rs523711 G A 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.92;ReadPosRankSum=-1.486;SOR=0.835 GT:AD:DP:GQ:PL 0/1:57,46:103:99:1668,0,2172 18 6985631 rs617206 C T 930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.188;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.712;SOR=0.408 GT:AD:DP:GQ:PL 0/1:39,41:80:99:959,0,1124 18 6985655 rs617573 C T 2513.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.28;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2542,195,0 18 6986259 rs62081531 G A 1589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-1.48;SOR=0.489 GT:AD:DP:GQ:PL 0/1:76,71:147:99:1618,0,1946 18 6997818 rs12961939 A C 1345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.119;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=0.874;SOR=0.754 GT:AD:DP:GQ:PL 0/1:80,66:146:99:1374,0,1708 18 6999628 rs625106 T C 3837.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.517 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3866,375,0 18 6999963 rs12970643 G A 2480.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.015;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.19;ReadPosRankSum=1.297;SOR=1.259 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2509,215,0 18 7011338 rs12969598 C T 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.697;SOR=0.834 GT:AD:DP:GQ:PL 0/1:110,114:224:99:2635,0,2646 18 7011413 rs619106 G A 2895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.771;SOR=0.809 GT:AD:DP:GQ:PL 0/1:91,120:211:99:2924,0,2051 18 7012123 rs9946794 A G 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.088;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=1.389;SOR=0.646 GT:AD:DP:GQ:PL 0/1:82,91:173:99:2359,0,1884 18 7017322 rs539713 A G 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=0.879;SOR=0.822 GT:AD:DP:GQ:PL 0/1:72,64:136:99:1410,0,1777 18 7023371 rs684634 A G 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.249;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=3.2;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.61;ReadPosRankSum=-0.345;SOR=0.402 GT:AD:DP:GQ:PL 0/1:40,50:90:99:1433,0,1050 18 7033037 rs621993 G A 1836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=0.926;QD=11.93;ReadPosRankSum=0.566;SOR=0.648 GT:AD:DP:GQ:PL 0/1:70,84:154:99:1865,0,1553 18 7034464 rs674733 T A 871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=0.151;SOR=1.036 GT:AD:DP:GQ:PL 0/1:26,35:61:99:900,0,674 18 7034508 rs566655 T G 1344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.278;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.222;SOR=0.847 GT:AD:DP:GQ:PL 0/1:49,56:105:99:1373,0,1163 18 7567803 rs67536179 C G 1330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.431;SOR=0.59 GT:AD:DP:GQ:PL 0/1:58,61:119:99:1359,0,1313 18 8069868 rs2230601 C T 2304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=5.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.121;SOR=0.863 GT:AD:DP:GQ:PL 0/1:109,101:210:99:2333,0,2667 18 8343530 rs2279074 G A 2749.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2778,288,0 18 8387058 rs664201 T G 6496.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.43;SOR=1.677 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,143:143:99:1|1:8387058_T_G:6525,439,0 18 8387065 rs594742 C T 6705.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.83;SOR=1.688 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,153:153:99:1|1:8387058_T_G:6734,460,0 18 8387195 rs593978 G A 6359.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6388,653,0 18 8387219 rs593950 G C 5942.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5971,590,0 18 8705679 rs8089706 C T 2399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=1.14;QD=10.86;ReadPosRankSum=-0.346;SOR=0.846 GT:AD:DP:GQ:PL 0/1:124,97:221:99:2428,0,2917 18 8705871 rs142882599 T G 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.586;SOR=0.673 GT:AD:DP:GQ:PL 0/1:142,109:251:99:2597,0,3615 18 8706143 rs11661625 C T 3171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.463;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.583;SOR=0.557 GT:AD:DP:GQ:PL 0/1:150,134:284:99:3200,0,4127 18 8706186 rs11661629 C T 3399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-0.257;SOR=0.595 GT:AD:DP:GQ:PL 0/1:189,148:337:99:3428,0,4529 18 8784370 rs918272 A G 9031.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.08;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,265:265:99:9060,796,0 18 8784612 rs1965665 A G 10523.8 PASS AC=2;AF=1;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,361:361:99:10552,1082,0 18 8798185 rs12386117 G A 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.47;ReadPosRankSum=1.717;SOR=0.711 GT:AD:DP:GQ:PL 0/1:148,88:236:99:1791,0,3637 18 8809568 rs690079 G A 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=1.686;SOR=0.77 GT:AD:DP:GQ:PL 0/1:90,85:175:99:1929,0,2178 18 8825192 rs581894 A G 8532.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.57;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,262:262:99:8561,786,0 18 8826083 rs3744977 G C 7238.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7267,678,0 18 8828952 rs2242273 C T 1945.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.695;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=5.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=1.211;SOR=1.113 GT:AD:DP:GQ:PL 0/1:123,83:206:99:1974,0,2896 18 9117867 rs906807 T C 681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.701;SOR=0.732 GT:AD:DP:GQ:PL 0/1:33,29:62:99:710,0,789 18 9255982 rs4798791 A G 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.762;SOR=0.69 GT:AD:DP:GQ:PL 0/1:81,85:166:99:1921,0,1995 18 9562042 rs2306134 C T 2752.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.396 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2781,280,0 18 9775372 rs6506697 A G 1013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.734;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=5.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.098;SOR=1.206 GT:AD:DP:GQ:PL 0/1:53,44:97:99:1042,0,1195 18 9886567 rs62078799 T G 862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.441;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=3.292;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.424;QD=11.5;ReadPosRankSum=1.129;SOR=1.14 GT:AD:DP:GQ:PGT:PID:PL 0/1:37,38:75:99:0|1:9886567_T_G:891,0,2277 18 9886568 rs112324257 TTATG T 847.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.168;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=3.217;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.497;QD=10.73;ReadPosRankSum=1.066;SOR=1.202 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,38:79:99:0|1:9886567_T_G:885,0,2318 18 9886890 rs601874 A G 5685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.528;ClippingRankSum=0;DB;DP=478;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=59.69;MQRankSum=0.363;QD=12.05;ReadPosRankSum=0.134;SOR=0.731 GT:AD:DP:GQ:PL 0/1:238,234:472:99:5714,0,5654 18 9888069 rs2240905 A G 2115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.963;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.158;SOR=0.825 GT:AD:DP:GQ:PL 0/1:96,89:185:99:2144,0,2269 18 10454960 rs28769876 C G 8152.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=1.126 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8181,837,0 18 10468453 rs539412 C T 1171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-2.765;SOR=0.674 GT:AD:DP:GQ:PL 0/1:60,50:110:99:1200,0,1652 18 10487918 rs3185480 C T 3388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-0.032;SOR=0.78 GT:AD:DP:GQ:PL 0/1:163,146:309:99:3417,0,4260 18 10539739 rs640832 A G 1061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-1.468;SOR=0.466 GT:AD:DP:GQ:PL 0/1:36,46:82:99:1090,0,814 18 10691216 rs3748422 G A 1890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=1.27;SOR=0.738 GT:AD:DP:GQ:PL 0/1:56,78:134:99:1919,0,1323 18 10699129 rs113682091 G T 2597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.243;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.05;SOR=0.814 GT:AD:DP:GQ:PL 0/1:99,108:207:99:2626,0,2555 18 10704619 rs4796901 C G 2399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.544;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.409;SOR=0.55 GT:AD:DP:GQ:PL 0/1:102,100:202:99:2428,0,2735 18 10705744 rs7227022 G A 5571.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=1.442 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5600,572,0 18 10731390 rs78691268 C G 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.157;SOR=0.886 GT:AD:DP:GQ:PL 0/1:53,59:112:99:1341,0,1189 18 10741011 rs5024299 G A 2665.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.2;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2694,291,0 18 10748603 rs8096037 A T 1570.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.332;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-1.761;SOR=1.01 GT:AD:DP:GQ:PL 0/1:66,65:131:99:1599,0,1507 18 10752666 rs7234309 C T 2319.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-1.622;SOR=0.788 GT:AD:DP:GQ:PL 0/1:117,102:219:99:2348,0,2824 18 10758023 rs7407105 G A 5328.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5357,563,0 18 10762962 rs7241380 G A 6775.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=1.025 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6804,681,0 18 10763007 rs7227167 T C 7250.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.67;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7279,783,0 18 10787047 rs6505592 G A 2756.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2785,270,0 18 11609645 rs77993106 G A 5361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.248;ClippingRankSum=0;DB;DP=567;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.5;MQ=58.73;MQRankSum=-0.564;QD=9.46;ReadPosRankSum=-1.348;SOR=0.565 GT:AD:DP:GQ:PL 0/1:333,234:567:99:5390,0,8178 18 11609682 rs117670705 C T 6444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DB;DP=702;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.99;MQRankSum=-6.859;QD=9.18;ReadPosRankSum=-1.481;SOR=0.691 GT:AD:DP:GQ:PL 0/1:409,293:702:99:6473,0,9975 18 11609727 rs8087289 C A 8892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.645;ClippingRankSum=0;DB;DP=709;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.97;MQRankSum=1.507;QD=12.61;ReadPosRankSum=-0.371;SOR=0.737 GT:AD:DP:GQ:PL 0/1:319,386:705:99:8921,0,7704 18 11609754 rs74496495 G A 7411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DB;DP=658;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=56.3;MQRankSum=0.709;QD=11.26;ReadPosRankSum=2.894;SOR=0.55 GT:AD:DP:GQ:PL 0/1:341,317:658:99:7440,0,8467 18 11609811 rs8087666 G C 4300.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.418;ClippingRankSum=0;DB;DP=415;ExcessHet=3.0103;FS=3.379;MLEAC=1;MLEAF=0.5;MQ=49.81;MQRankSum=-12.536;QD=10.36;ReadPosRankSum=-0.642;SOR=0.945 GT:AD:DP:GQ:PL 0/1:266,149:415:99:4329,0,7595 18 11609863 rs112705545 G A 7749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.984;ClippingRankSum=0;DB;DP=545;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.5;MQ=53.47;MQRankSum=8.84;QD=14.22;ReadPosRankSum=1.877;SOR=0.601 GT:AD:DP:GQ:PL 0/1:230,315:545:99:7778,0,5838 18 11609903 rs8087561 C G 26159.8 PASS AC=2;AF=1;AN=2;DB;DP=582;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.17;QD=44.95;SOR=0.757 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,582:582:99:1|1:11609903_C_G:26188,1758,0 18 11609904 rs8087447 A G 26159.8 PASS AC=2;AF=1;AN=2;DB;DP=581;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.17;QD=45.03;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,581:581:99:1|1:11609903_C_G:26188,1758,0 18 11609978 rs79858187 C T 8257.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.78;ClippingRankSum=0;DB;DP=451;ExcessHet=3.0103;FS=4.05;MLEAC=1;MLEAF=0.5;MQ=56.22;MQRankSum=-16.454;QD=18.31;ReadPosRankSum=-0.847;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:240,211:451:99:0|1:11609978_C_T:8286,0,9317 18 11609981 rs76641843 T C 8228.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0;DB;DP=457;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.5;MQ=55.87;MQRankSum=-16.813;QD=18.01;ReadPosRankSum=-1.429;SOR=0.552 GT:AD:DP:GQ:PGT:PID:PL 0/1:240,217:457:99:0|1:11609978_C_T:8257,0,9367 18 11609994 rs75154847 C T 7562.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.876;ClippingRankSum=0;DB;DP=424;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=55.08;MQRankSum=-17.557;QD=17.84;ReadPosRankSum=-1.44;SOR=0.647 GT:AD:DP:GQ:PGT:PID:PL 0/1:226,198:424:99:0|1:11609994_C_T:7591,0,8607 18 11610001 rs79348909 A G 7357.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=416;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.99;MQRankSum=-17.376;QD=17.69;ReadPosRankSum=-0.909;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:222,194:416:99:0|1:11609994_C_T:7386,0,8526 18 11610024 rs80224205 A G 5275.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.805;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.89;MQRankSum=-17.974;QD=12.13;ReadPosRankSum=1.206;SOR=0.711 GT:AD:DP:GQ:PL 0/1:239,196:435:99:5304,0,6131 18 11610042 rs76699910 G A 7412.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.357;ClippingRankSum=0;DB;DP=466;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.5;MQ=55.71;MQRankSum=-15.161;QD=15.94;ReadPosRankSum=1.378;SOR=0.787 GT:AD:DP:GQ:PL 0/1:247,218:465:99:7441,0,9515 18 11610052 rs74410464 T C 9003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.155;ClippingRankSum=0;DB;DP=487;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=55.85;MQRankSum=14.097;QD=18.53;ReadPosRankSum=-0.555;SOR=0.714 GT:AD:DP:GQ:PL 0/1:238,248:486:99:9032,0,9381 18 11610073 rs75301503 G A 6010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.657;ClippingRankSum=0;DB;DP=502;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=55.57;MQRankSum=14.543;QD=12.02;ReadPosRankSum=-0.677;SOR=0.742 GT:AD:DP:GQ:PL 0/1:247,253:500:99:6039,0,7894 18 11610121 rs73943948 G A 5076.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.637;ClippingRankSum=0;DB;DP=472;ExcessHet=3.0103;FS=3.221;MLEAC=1;MLEAF=0.5;MQ=55.16;MQRankSum=-10.875;QD=10.8;ReadPosRankSum=2.157;SOR=0.92 GT:AD:DP:GQ:PL 0/1:251,219:470:99:5105,0,6434 18 11610149 rs74706935 G A 5543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.43;ClippingRankSum=0;DB;DP=437;ExcessHet=3.0103;FS=8.205;MLEAC=1;MLEAF=0.5;MQ=53.76;MQRankSum=-4.004;QD=12.72;ReadPosRankSum=1.447;SOR=1.065 GT:AD:DP:GQ:PL 0/1:254,182:436:99:5572,0,6565 18 11610162 rs73943949 G A 5714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=17.211;MLEAC=1;MLEAF=0.5;MQ=51.9;MQRankSum=-0.341;QD=14.04;ReadPosRankSum=0.252;SOR=1.262 GT:AD:DP:GQ:PL 0/1:250,157:407:99:5743,0,10458 18 11610163 rs62084100 G T,C 14601.8 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=51.43;QD=34.52;SOR=0.707 GT:AD:DP:GQ:PL 1/2:0,155,268:423:99:14630,8430,10458,6567,0,5743 18 11610218 rs112431640 C G 575.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.8;ClippingRankSum=0;DB;DP=513;ExcessHet=3.0103;FS=52.133;MLEAC=1;MLEAF=0.5;MQ=48.67;MQRankSum=-7.514;QD=1.12;ReadPosRankSum=-1.107;SOR=4.327 GT:AD:DP:GQ:PL 0/1:456,56:512:99:604,0,12064 18 11610321 rs200732647 T A 231.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.128;ClippingRankSum=0;DB;DP=566;ExcessHet=3.0103;FS=49.372;MLEAC=1;MLEAF=0.5;MQ=48.23;MQRankSum=-9.785;QD=0.41;ReadPosRankSum=0.418;SOR=6.486 GT:AD:DP:GQ:PL 0/1:509,56:565:99:260,0,12088 18 11610349 rs62084102 G A 12701.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-10.888;ClippingRankSum=0;DB;DP=459;ExcessHet=3.0103;FS=31.69;MLEAC=1;MLEAF=0.5;MQ=44.93;MQRankSum=7.119;QD=27.67;ReadPosRankSum=2.508;SOR=0.006 GT:AD:DP:GQ:PL 0/1:40,419:459:99:12730,0,200 18 11610362 rs200995421 G C 3347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=43.32;MQRankSum=0.867;QD=8.83;ReadPosRankSum=0.951;SOR=0.676 GT:AD:DP:GQ:PL 0/1:224,155:379:99:3376,0,5745 18 11610382 rs201757125 C A 8223.41 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.754;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=15.678;MLEAC=1;MLEAF=0.5;MQ=41.69;MQRankSum=4.356;QD=30.34;ReadPosRankSum=3.818;SOR=0.089 GT:AD:DP:GQ:PL 0/1:21,250:271:8:8251,0,8 18 11610443 rs199989073 T C 3473.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=5.632;MLEAC=2;MLEAF=1;MQ=37.54;MQRankSum=3.084;QD=26.52;ReadPosRankSum=-1.165;SOR=1.764 GT:AD:DP:GQ:PL 1/1:11,120:131:60:3502,60,0 18 11610468 rs376368875 A G 2341.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.999;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.77;MQRankSum=-1.741;QD=32.52;ReadPosRankSum=-0.927;SOR=1.19 GT:AD:DP:GQ:PL 1/1:2,70:72:99:2370,133,0 18 11610490 rs373422559 T A 1163.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.714;ClippingRankSum=0;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.7;MQRankSum=-1.521;QD=33.25;ReadPosRankSum=0.05;SOR=0.399 GT:AD:DP:GQ:PL 1/1:1,34:35:98:1192,98,0 18 11610508 . T C 619.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.009;ClippingRankSum=0;DP=42;ExcessHet=3.0103;FS=31.27;MLEAC=1;MLEAF=0.5;MQ=29.22;MQRankSum=0.802;QD=15.12;ReadPosRankSum=0.292;SOR=0.49 GT:AD:DP:GQ:PL 0/1:18,23:41:99:648,0,625 18 11610518 rs188218846 T C 364.77 SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.456;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=32.48;MLEAC=1;MLEAF=0.5;MQ=29.15;MQRankSum=-1.85;QD=8.11;ReadPosRankSum=1.82;SOR=5.541 GT:AD:DP:GQ:PL 0/1:29,16:45:99:393,0,1071 18 11610570 rs200091851 C T 1959.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.5;MQ=35.2;MQRankSum=3.333;QD=25.79;ReadPosRankSum=-2.066;SOR=0.423 GT:AD:DP:GQ:PGT:PID:PL 0/1:27,49:76:99:0|1:11610570_C_T:1988,0,1088 18 11610580 rs201205019 T G 2296.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.739;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=2.706;MLEAC=1;MLEAF=0.5;MQ=35.78;MQRankSum=3.5;QD=26.1;ReadPosRankSum=-2.549;SOR=0.38 GT:AD:DP:GQ:PGT:PID:PL 0/1:27,61:88:99:0|1:11610570_C_T:2325,0,1075 18 11610583 rs201970255 G T 578.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.641;MLEAC=1;MLEAF=0.5;MQ=35.89;MQRankSum=-3.18;QD=6.36;ReadPosRankSum=1.937;SOR=1.426 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,20:91:99:0|1:11610583_G_T:607,0,3142 18 11610595 rs200189946 G A 549.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.61;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=4.643;MLEAC=1;MLEAF=0.5;MQ=36.22;MQRankSum=-3.011;QD=6.04;ReadPosRankSum=0.65;SOR=1.436 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,19:91:99:0|1:11610583_G_T:578,0,3209 18 11610624 rs192171725 G C 483.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.5;MQ=37;MQRankSum=-2.788;QD=5.09;ReadPosRankSum=-2.562;SOR=0.498 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,20:95:99:0|1:11610624_G_C:512,0,3323 18 11610629 rs139811051 T C 2676.78 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.746;MLEAC=2;MLEAF=1;MQ=37.13;MQRankSum=1.388;QD=28.48;ReadPosRankSum=-1.117;SOR=0.392 GT:AD:DP:GQ:PL 1/1:7,87:94:25:2705,25,0 18 11610630 rs201063997 G A 462.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.41;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.5;MQ=37.13;MQRankSum=-2.547;QD=4.92;ReadPosRankSum=-2.568;SOR=0.446 GT:AD:DP:GQ:PGT:PID:PL 0/1:75,19:94:99:0|1:11610624_G_C:491,0,3326 18 11886563 rs662515 C G 2491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.07;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=2.724;SOR=0.551 GT:AD:DP:GQ:PL 0/1:91,94:185:99:2520,0,2218 18 11887031 rs16976823 C T 1075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.594;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.685;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.008;SOR=1.096 GT:AD:DP:GQ:PL 0/1:61,47:108:99:1104,0,1447 18 11999038 rs45442994 G A 672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=2.803;SOR=0.323 GT:AD:DP:GQ:PL 0/1:35,30:65:99:701,0,883 18 12094006 rs9964971 C T 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.99;ReadPosRankSum=0.469;SOR=0.853 GT:AD:DP:GQ:PL 0/1:39,68:107:99:1846,0,959 18 12094031 rs11664969 G T 1523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.803;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=-1.392;SOR=0.766 GT:AD:DP:GQ:PL 0/1:100,71:171:99:1552,0,2701 18 12096249 rs1986751 G T 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.829;SOR=0.765 GT:AD:DP:GQ:PL 0/1:56,56:112:99:1251,0,1351 18 12099654 rs6505715 T C 670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=-1.126;SOR=0.698 GT:AD:DP:GQ:PL 0/1:39,35:74:99:699,0,894 18 12115509 rs4519391 G A 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=4.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-1.53;SOR=0.618 GT:AD:DP:GQ:PL 0/1:45,58:103:99:1417,0,1189 18 12124152 rs11873244 C G 130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.479;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=48.83;MQRankSum=-0.286;QD=3.85;ReadPosRankSum=0.43;SOR=0.807 GT:AD:DP:GQ:PL 0/1:27,7:34:99:159,0,790 18 12125657 rs7243248 G A 1603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.655;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=3.195;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=-0.939;QD=12.53;ReadPosRankSum=1.854;SOR=0.725 GT:AD:DP:GQ:PL 0/1:61,67:128:99:1632,0,1669 18 12274104 rs11545881 G T 4966.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.874;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=3.546;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.44;ReadPosRankSum=-0.547;SOR=0.629 GT:AD:DP:GQ:PL 1/1:1,180:181:99:4995,527,0 18 12308273 rs11548177 G T 773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=-0.48;SOR=0.812 GT:AD:DP:GQ:PL 0/1:51,35:86:99:802,0,1246 18 12308793 rs11267036 G C 747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.447;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.1;SOR=0.582 GT:AD:DP:GQ:PL 0/1:33,35:68:99:776,0,690 18 12348285 rs11553521 T C 1408.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.652;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=0.687;SOR=0.775 GT:AD:DP:GQ:PL 0/1:42,57:99:99:1437,0,856 18 12351342 rs11080572 C T 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-0.168;SOR=0.55 GT:AD:DP:GQ:PL 0/1:86,105:191:99:2322,0,2070 18 12359920 rs8097342 G A 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.299;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=9.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.686;SOR=1.27 GT:AD:DP:GQ:PL 0/1:61,67:128:99:1671,0,1444 18 12718593 rs2302768 A G 4277.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4306,447,0 18 12986926 . TTCC T 141.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0;DP=178;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.86;ReadPosRankSum=-0.823;SOR=0.773 GT:AD:DP:GQ:PL 0/1:150,15:165:99:179,0,6516 18 13068339 rs75368222 T A 668.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.45;SOR=0.435 GT:AD:DP:GQ:PL 0/1:40,31:71:99:697,0,1037 18 13642721 rs12326169 T C 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.902;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=1;SOR=0.729 GT:AD:DP:GQ:PL 0/1:98,76:174:99:1901,0,2409 18 13671976 . C CA 141.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.267;ClippingRankSum=0;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.3;ReadPosRankSum=-0.668;SOR=0.766 GT:AD:DP:GQ:PL 0/1:31,12:46:99:179,0,634 18 14105923 rs2159940 T C 2686.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.37;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2715,249,0 18 14106039 rs62086326 T C 2196.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2225,203,0 18 14524966 rs8089144 T C 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.508;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=49.69;MQRankSum=-8.818;QD=6.68;ReadPosRankSum=-0.5;SOR=0.626 GT:AD:DP:GQ:PL 0/1:143,63:206:99:1404,0,3572 18 14533105 rs199815986 G C 4223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.473;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.5;MQ=40.73;MQRankSum=-3.715;QD=12.07;ReadPosRankSum=-2.468;SOR=0.733 GT:AD:DP:GQ:PL 0/1:165,185:350:99:4252,0,3716 18 14537949 rs7505568 A G 4112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=419;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.5;MQ=57.87;MQRankSum=-4.242;QD=9.82;ReadPosRankSum=2.485;SOR=0.924 GT:AD:DP:GQ:PL 0/1:239,180:419:99:4141,0,6048 18 14542648 rs12454500 C A 4409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.277;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.5;MQ=59.42;MQRankSum=1.205;QD=11.73;ReadPosRankSum=0.928;SOR=0.587 GT:AD:DP:GQ:PL 0/1:192,184:376:99:4438,0,5333 18 14542791 rs201849570 C T 351.77 SNP_QD_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.769;ClippingRankSum=0;DB;DP=890;ExcessHet=3.0103;FS=43.515;MLEAC=1;MLEAF=0.5;MQ=55.39;MQRankSum=-16.874;QD=0.4;ReadPosRankSum=-0.12;SOR=8.467 GT:AD:DP:GQ:PL 0/1:813,76:889:99:380,0,22220 18 14542867 rs200779556 C T 9589.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.965;ClippingRankSum=0;DB;DP=983;ExcessHet=3.0103;FS=13.734;MLEAC=1;MLEAF=0.5;MQ=54.34;MQRankSum=-13.025;QD=9.95;ReadPosRankSum=-6.395;SOR=1.482 GT:AD:DP:GQ:PGT:PID:PL 0/1:680,284:964:99:0|1:14542867_C_T:9618,0,26066 18 14542890 rs45469098 G C 6671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.12;ClippingRankSum=0;DB;DP=1103;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.5;MQ=53.36;MQRankSum=14.212;QD=6.19;ReadPosRankSum=0.708;SOR=0.593 GT:AD:DP:GQ:PL 0/1:755,323:1078:99:6700,0,29256 18 14542909 rs370268513 G A 18530.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-9.161;ClippingRankSum=0;DB;DP=1189;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=51.97;MQRankSum=-9.254;QD=15.95;ReadPosRankSum=5.203;SOR=0.622 GT:AD:DP:GQ:PGT:PID:PL 0/1:664,498:1162:99:0|1:14542867_C_T:18559,0,27102 18 14542931 rs45554841 C T 8939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.187;ClippingRankSum=0;DB;DP=1224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.5;MQRankSum=-8.255;QD=7.47;ReadPosRankSum=-6.013;SOR=0.713 GT:AD:DP:GQ:PL 0/1:893,304:1197:99:8968,0,36044 18 14542949 rs9807555 T C 7817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.887;ClippingRankSum=0;DB;DP=1164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.02;MQRankSum=-10.24;QD=6.87;ReadPosRankSum=-5.769;SOR=0.661 GT:AD:DP:GQ:PL 0/1:866,272:1138:99:7846,0,35105 18 14542954 . A ACACTTGCCCATCTTGCTCCTGAGCGTCTTCATAAAGGAGTCGTCGTGGTCTCCAGAAGTGCCCATGTTGCTCTTGCCGCTCCCCCTGCAGCAGGGGAAGCGGTGGTGGCAC 18638.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.53;ClippingRankSum=0;DP=1153;ExcessHet=3.0103;FS=7.417;MLEAC=1;MLEAF=0.5;MQ=51.07;MQRankSum=-6.215;QD=19.1;ReadPosRankSum=9.85;SOR=1.202 GT:AD:DP:GQ:PL 0/1:609,367:980:99:18667,0,22816 18 14543039 rs45570841 T C 2335.77 SNP_FS_filter;SNP_MQRankSum_filter;SNP_ReadPosRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=15.15;ClippingRankSum=0;DB;DP=728;ExcessHet=3.0103;FS=67.555;MLEAC=1;MLEAF=0.5;MQ=55.15;MQRankSum=-19.591;QD=3.22;ReadPosRankSum=-8.625;SOR=6.219 GT:AD:DP:GQ:PL 0/1:613,112:725:99:2364,0,24133 18 14543057 rs9807633 T G 8680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.955;ClippingRankSum=0;DB;DP=624;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=57.5;MQRankSum=-0.331;QD=13.93;ReadPosRankSum=2.708;SOR=0.564 GT:AD:DP:GQ:PGT:PID:PL 0/1:366,257:623:99:0|1:14543057_T_G:8709,0,13362 18 14543098 rs11873462 C T 8026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0;DB;DP=511;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.83;MQRankSum=-1.664;QD=15.74;ReadPosRankSum=-0.617;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:280,230:510:99:0|1:14543057_T_G:8055,0,10188 18 14543139 rs28535987 T C 14318.8 PASS AC=2;AF=1;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.12;QD=36.34;SOR=1.229 GT:AD:DP:GQ:PL 1/1:0,394:394:99:14347,1191,0 18 14752957 rs12457503 G A 4848.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,169:169:99:4877,507,0 18 14779969 rs9675365 C G 231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.402;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.41;ReadPosRankSum=-0.01;SOR=0.76 GT:AD:DP:GQ:PL 0/1:54,14:68:99:260,0,1409 18 14796214 rs9303863 G T 1166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.5;MQ=59.31;MQRankSum=-0.265;QD=15.35;ReadPosRankSum=0.657;SOR=0.873 GT:AD:DP:GQ:PL 0/1:32,44:76:99:1195,0,869 18 14848820 rs4090319 C T 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.07;MQRankSum=10.451;QD=13.35;ReadPosRankSum=1.344;SOR=0.745 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,87:156:99:0|1:14848820_C_T:2111,0,2616 18 14848821 rs28555630 G A 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53;MQRankSum=-10.534;QD=9.45;ReadPosRankSum=-1.061;SOR=0.655 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,68:156:99:1|0:14848820_C_T:1502,0,3439 18 14848935 rs3878726 C T 1090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.5;MQ=52.16;MQRankSum=-5.585;QD=8.59;ReadPosRankSum=0.128;SOR=0.623 GT:AD:DP:GQ:PL 0/1:76,51:127:99:1119,0,2001 18 14850375 rs3126404 G A 916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.19;MQRankSum=-0.234;QD=12.22;ReadPosRankSum=0.506;SOR=0.704 GT:AD:DP:GQ:PL 0/1:36,39:75:99:945,0,985 18 14851756 rs148887033 G A 546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.914;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=20.353;MLEAC=1;MLEAF=0.5;MQ=51.5;MQRankSum=-8.096;QD=3.22;ReadPosRankSum=-0.159;SOR=2.071 GT:AD:DP:GQ:PL 0/1:139,31:170:99:575,0,3676 18 14852335 rs12386087 C A 3988.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.23;QD=30.68;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4017,390,0 18 18564483 rs45562542 G C 925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.41;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.175;SOR=0.597 GT:AD:DP:GQ:PL 0/1:43,37:80:99:954,0,1087 18 19110466 rs35451929 TG T 755.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.19;ReadPosRankSum=1.62;SOR=1.675 GT:AD:DP:GQ:PL 1/1:1,29:30:62:793,62,0 18 19119974 rs58118596 GAT G 766.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.292;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.9;MLEAC=1;MLEAF=0.5;MQ=60.63;MQRankSum=-2.674;QD=21.3;ReadPosRankSum=-0.618;SOR=0.399 GT:AD:DP:GQ:PGT:PID:PL 0/1:5,31:36:49:1|0:19119971_CTA_C:804,0,49 18 19153494 rs973730 C T 5215.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5244,481,0 18 19154143 rs13381941 G A 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.59;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=4.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.367;SOR=0.93 GT:AD:DP:GQ:PL 0/1:109,96:205:99:2296,0,2746 18 19752072 . TACC T 92.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.629;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.91;ReadPosRankSum=1.627;SOR=0.578 GT:AD:DP:GQ:PL 0/1:92,10:102:99:130,0,3682 18 19995753 rs9946145 T C 13161.8 PASS AC=2;AF=1;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,450:450:99:13190,1346,0 18 19996011 rs7227477 G A 2539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.852;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=5.869;MLEAC=1;MLEAF=0.5;MQ=58.81;MQRankSum=-3.009;QD=12.51;ReadPosRankSum=-0.473;SOR=0.418 GT:AD:DP:GQ:PL 0/1:103,100:203:99:2568,0,2895 18 20577669 rs17852769 G A 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=0.161;SOR=0.578 GT:AD:DP:GQ:PL 0/1:49,41:90:99:827,0,1184 18 20716014 rs139352344 GGGCGCCGGC G 3811.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.5;MQ=60.93;MQRankSum=3.557;QD=22.16;ReadPosRankSum=2.668;SOR=0.786 GT:AD:DP:GQ:PL 0/1:72,100:172:99:3849,0,4255 18 20953720 rs8099409 G A 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.04;ReadPosRankSum=0.848;SOR=0.891 GT:AD:DP:GQ:PL 0/1:94,61:155:99:1275,0,2304 18 20965034 rs62095860 G A 807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.164;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=-1.374;SOR=0.929 GT:AD:DP:GQ:PL 0/1:53,36:89:99:836,0,1353 18 21017836 rs7226498 T C 3764.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=29.18;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3793,386,0 18 21044607 rs2291993 G A 620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.752;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.34;ReadPosRankSum=-0.174;SOR=0.743 GT:AD:DP:GQ:PL 0/1:15,23:38:99:649,0,281 18 21100240 rs1367083 C T 4524.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4553,479,0 18 21109250 rs1788825 T C 8247.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8276,813,0 18 21109269 rs1652375 T C 6983.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7012,704,0 18 21119777 rs1140458 G A 4339.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4368,461,0 18 21120444 rs1805082 T C 2072.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=29.19;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2101,212,0 18 21123536 rs11299077 TA T 515.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.543;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.621;SOR=0.667 GT:AD:DP:GQ:PL 0/1:18,27:62:99:553,0,264 18 21124907 rs3837910 A ACCCC 280.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=46.79;ReadPosRankSum=-1.042;SOR=4.047 GT:AD:DP:GQ:PL 1/1:1,5:15:18:223,18,0 18 21124945 . C G 1150.77 PASS AC=2;AF=1;AN=2;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.85;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1179,102,0 18 21140432 rs1805081 T C 3787.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.311 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3816,374,0 18 21413869 rs9962023 T C 4982.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5011,521,0 18 21437931 rs867449 G C 5903.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5932,588,0 18 21441717 rs12965685 C T 5989.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6018,612,0 18 21511089 rs1154233 A G 3034.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3063,320,0 18 21511172 rs1258107 G C 2503.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2532,264,0 18 21529722 rs2241643 G A 2708.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.82;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2737,282,0 18 21694618 rs4800176 G A 1580.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1609,162,0 18 21710321 rs12970083 C T 2125.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.97;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2154,227,0 18 21736933 rs1049683 T G 1604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.98;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=-0.088;SOR=0.699 GT:AD:DP:GQ:PL 0/1:74,65:139:99:1633,0,1724 18 21739725 rs1049684 T C 1443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-0.532;SOR=0.803 GT:AD:DP:GQ:PL 0/1:89,64:153:99:1472,0,2346 18 21891975 rs2337961 A G 1042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.69;ReadPosRankSum=-0.309;SOR=0.91 GT:AD:DP:GQ:PL 0/1:70,50:120:99:1071,0,1634 18 21897189 rs34306542 A G 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.365;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.95;ReadPosRankSum=-0.813;SOR=0.954 GT:AD:DP:GQ:PL 0/1:38,41:79:99:1209,0,980 18 21898556 rs12955338 T C 1044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=6.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=-2.836;SOR=1.483 GT:AD:DP:GQ:PL 0/1:31,43:74:99:1073,0,758 18 22020467 rs582234 T A 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.772;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=-0.065;SOR=0.682 GT:AD:DP:GQ:PL 0/1:68,47:115:99:1011,0,1529 18 22020543 rs677688 C G 2513.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.139 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2542,252,0 18 22642716 . CAAAAAAAAAAAA C 200.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0;DP=14;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=18.25;ReadPosRankSum=2.1;SOR=2.258 GT:AD:DP:GQ:PL 0/1:5,6:11:99:238,0,201 18 23854692 rs17224558 C T 2685.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.455;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=-0.397;SOR=0.856 GT:AD:DP:GQ:PL 0/1:79,106:185:99:2714,0,1745 18 23865851 rs12456749 C T 1622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=0.366;SOR=0.9 GT:AD:DP:GQ:PL 0/1:81,72:153:99:1651,0,1929 18 23866349 rs3744961 G A 1843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.534;SOR=0.545 GT:AD:DP:GQ:PL 0/1:91,81:172:99:1872,0,2255 18 23866482 rs8089000 C T 2554.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2583,267,0 18 23872235 rs12963653 A G 1424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.674;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.38;ReadPosRankSum=-0.313;SOR=0.8 GT:AD:DP:GQ:PL 0/1:105,65:170:99:1453,0,2433 18 24035788 rs3755 G A 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.972;QD=9.64;ReadPosRankSum=0.118;SOR=0.815 GT:AD:DP:GQ:PL 0/1:133,104:237:99:2314,0,3295 18 24442392 rs35248760 C A 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=0.791;SOR=0.616 GT:AD:DP:GQ:PL 0/1:154,107:261:99:2314,0,3803 18 25543387 rs1041985 G A 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.547;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.883;SOR=0.703 GT:AD:DP:GQ:PL 0/1:84,76:160:99:1763,0,1824 18 25565082 rs1220144 A G 3420.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3449,354,0 18 25570228 rs1628684 G C 3895.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3924,384,0 18 28581718 rs370710479 A G 817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.866;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.614;SOR=0.385 GT:AD:DP:GQ:PL 0/1:30,31:61:99:846,0,809 18 28586964 rs1313586 A G 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.23;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=0.978;SOR=0.616 GT:AD:DP:GQ:PL 0/1:62,55:117:99:1197,0,1498 18 28604374 rs35630063 T C 1732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=6.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=0.278;SOR=0.46 GT:AD:DP:GQ:PL 0/1:57,72:129:99:1761,0,1322 18 28605715 rs202439 A T 1049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.079;SOR=0.464 GT:AD:DP:GQ:PL 0/1:33,45:78:99:1078,0,798 18 28611139 rs276936 A C 2986.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3015,303,0 18 28666526 rs35717505 T TTAA 4720.73 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=44.96;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,105:105:99:4758,319,0 18 28673565 rs12954874 T C 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.592;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=5.617;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.781;SOR=1.388 GT:AD:DP:GQ:PL 0/1:43,43:86:99:1166,0,963 18 28713994 rs28620831 A G 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.853;SOR=0.671 GT:AD:DP:GQ:PL 0/1:103,106:209:99:2389,0,2315 18 28722039 rs2577075 G A 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=0.573;SOR=0.591 GT:AD:DP:GQ:PL 0/1:67,51:118:99:1146,0,1710 18 28722103 rs2577074 T C 1098.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-1.033;SOR=0.629 GT:AD:DP:GQ:PL 0/1:59,52:111:99:1127,0,1390 18 28734749 rs2249810 A G 1747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.055;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=-0.466;SOR=0.606 GT:AD:DP:GQ:PL 0/1:61,70:131:99:1776,0,1470 18 28739495 rs35550730 C CAA 986.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.618;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.335;SOR=1.179 GT:AD:DP:GQ:PL 0/1:40,35:92:99:1024,0,1158 18 28898294 rs1426310 A G 3709.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3738,396,0 18 28913599 rs12967407 C T 4220.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4249,429,0 18 28968371 rs16959856 G A 5390.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5419,543,0 18 28968959 rs9956865 C T 4326.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4355,435,0 18 28986333 rs4799570 A C 5432.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.93;SOR=1.353 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5461,494,0 18 28993183 rs12960081 A G 6597.77 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6626,639,0 18 28993501 rs7234288 C A 5828.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,203:203:99:5857,609,0 18 29055957 rs1380866 A G 6482.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6511,645,0 18 29101215 . CT C 168.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0;DP=94;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.295;QD=2.52;ReadPosRankSum=-0.277;SOR=0.81 GT:AD:DP:GQ:PL 0/1:50,17:81:99:206,0,1099 18 29104564 rs3737378 C A 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=3.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.368;SOR=1.049 GT:AD:DP:GQ:PL 0/1:49,41:90:99:1150,0,1360 18 29104698 rs2230233 C T 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.376;SOR=0.87 GT:AD:DP:GQ:PL 0/1:72,72:144:99:1712,0,1868 18 29104714 rs2230234 A G 1765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.868;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=0.173;SOR=0.555 GT:AD:DP:GQ:PL 0/1:66,71:137:99:1794,0,1544 18 29122618 rs79241126 G A 2389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.297;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.495;SOR=0.974 GT:AD:DP:GQ:PL 0/1:119,92:211:99:2418,0,2887 18 29122799 rs2278792 G A 1330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=1.947;SOR=0.404 GT:AD:DP:GQ:PL 0/1:56,52:108:99:1359,0,1456 18 29126670 rs1791235 T C 1180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.177;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=5.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.297;SOR=1.296 GT:AD:DP:GQ:PL 0/1:67,48:115:99:1209,0,1711 18 29172865 rs1800458 G A 2157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.842;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=6.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-1.156;SOR=1.183 GT:AD:DP:GQ:PL 0/1:91,86:177:99:2186,0,2102 18 29339910 rs3859364 G T 6994.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.51;QD=31.09;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,225:225:99:7023,675,0 18 29497573 rs6506948 A G 3630.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3659,380,0 18 29797921 rs616114 C T 3244.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3273,339,0 18 30349691 rs17851892 C T 2182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.061;SOR=0.628 GT:AD:DP:GQ:PL 0/1:111,96:207:99:2211,0,2868 18 30804756 rs466113 C T 2628.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=1.382 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2657,264,0 18 30846895 rs9965081 A T 2031.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2060,219,0 18 30950168 rs9965655 T C 2400.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2429,234,0 18 31320229 rs2282632 A G 2498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.196;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.686;SOR=0.835 GT:AD:DP:GQ:PL 0/1:81,100:181:99:2527,0,1825 18 31324934 rs7232237 A G 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=0.344;SOR=0.523 GT:AD:DP:GQ:PL 0/1:112,105:217:99:2347,0,2663 18 32374062 rs117571555 G A 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=2.276;SOR=0.727 GT:AD:DP:GQ:PL 0/1:105,66:171:99:1580,0,2879 18 32444040 rs1617318 G A 1569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.289;SOR=0.904 GT:AD:DP:GQ:PL 0/1:58,71:129:99:1598,0,1287 18 32455379 rs541157 T C 2316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.465;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.39;ReadPosRankSum=-1.049;SOR=0.484 GT:AD:DP:GQ:PL 0/1:85,88:173:99:2345,0,1987 18 32470291 rs9944927 G A 3475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=1.292;SOR=0.695 GT:AD:DP:GQ:PL 0/1:173,151:324:99:3504,0,4357 18 32826088 rs2278463 A G 6874.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.74;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6903,629,0 18 32833766 rs61731888 A C 2164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.957;SOR=0.68 GT:AD:DP:GQ:PL 0/1:82,85:167:99:2193,0,2106 18 32917644 rs2032729 T C 1921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.931;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=-0.181;SOR=0.512 GT:AD:DP:GQ:PL 0/1:65,75:140:99:1950,0,1592 18 33269274 rs3737383 T A 1118.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.29;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1147,123,0 18 33272291 rs201969184 AAT A 66.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.172;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.52;ReadPosRankSum=0.087;SOR=0.816 GT:AD:DP:GQ:PL 0/1:38,6:46:99:104,0,1274 18 33557466 rs2276314 A G 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.218;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-1.461;SOR=0.772 GT:AD:DP:GQ:PL 0/1:90,72:162:99:1638,0,2125 18 33647254 rs1789517 A C 5510.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5539,525,0 18 33694120 rs1050631 G A 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-1.664;SOR=0.677 GT:AD:DP:GQ:PL 0/1:99,79:178:99:1903,0,2698 18 33706614 rs1789528 C G 7542.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7571,748,0 18 33713287 rs1785905 T A 1219.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.95;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1248,140,0 18 33718326 rs1785934 A C 4104.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4133,401,0 18 33719434 rs1785932 C T 5641.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5670,557,0 18 33725931 rs1785928 G A 2305.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.252 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2334,233,0 18 33750046 rs8299 C T 4433.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4462,482,0 18 33779821 rs646424 C A 4848.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.899 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4877,466,0 18 33779855 rs623053 C T 4891.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,168:168:99:4920,496,0 18 33779896 rs540967 A G 6870.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6899,641,0 18 33780020 rs623558 A G 7893.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7922,781,0 18 33785093 rs678560 G A 4937.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=30.48;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4966,486,0 18 33785185 rs667667 A G 5899.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5928,599,0 18 33828980 rs567458 C G 2461.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2490,260,0 18 33831189 rs594445 C A 4350.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4379,454,0 18 33848663 rs111317566 A ATACAT 1503.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.098;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.061;QD=18.12;ReadPosRankSum=0.534;SOR=0.906 GT:AD:DP:GQ:PL 0/1:43,40:83:99:1541,0,2869 18 34647525 rs11311186 CT C 310.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.508;QD=3.61;ReadPosRankSum=0.755;SOR=0.875 GT:AD:DP:GQ:PL 0/1:61,25:116:99:348,0,1344 18 40323497 rs1804730 G T 2390.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2419,245,0 18 40503735 rs10633642 G GA 303.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.042;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=0;QD=4.67;ReadPosRankSum=0.885;SOR=0.858 GT:AD:DP:GQ:PL 0/1:42,23:91:99:341,0,906 18 40613840 rs12954451 A G 537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=1.01;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-0.629;SOR=0.846 GT:AD:DP:GQ:PL 0/1:28,26:54:99:566,0,602 18 42456653 rs663651 G A 2486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.226;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.987;QD=16.47;ReadPosRankSum=1.092;SOR=0.929 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,66:151:99:0|1:42456653_G_A:2515,0,5367 18 42456670 rs3085861 C CTCTT 2583.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.196;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=2.499;QD=17.46;ReadPosRankSum=0.877;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 0/1:81,67:148:99:0|1:42456653_G_A:2621,0,5334 18 42532606 rs3744825 G A 1970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.13;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-1.606;SOR=0.717 GT:AD:DP:GQ:PL 0/1:97,83:180:99:1999,0,2456 18 42533130 rs8096662 A G 6394.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.9 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6423,630,0 18 43206985 rs1484873 A G 4899.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4928,521,0 18 43246156 rs9960464 G A 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.052;SOR=0.818 GT:AD:DP:GQ:PL 0/1:42,49:91:99:1170,0,970 18 43247001 rs2156609 C G 3382.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3411,327,0 18 43247784 rs9964193 C T 720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.316;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=0.691;SOR=0.911 GT:AD:DP:GQ:PL 0/1:55,32:87:99:749,0,1386 18 43262359 rs3745009 G A 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.59;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.357;SOR=0.618 GT:AD:DP:GQ:PL 0/1:75,76:151:99:1695,0,1736 18 43262501 rs3745008 C T 723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=0.122;SOR=0.632 GT:AD:DP:GQ:PL 0/1:30,32:62:99:752,0,847 18 43307246 rs11877062 C T 1652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.93;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-0.552;SOR=0.635 GT:AD:DP:GQ:PL 0/1:93,78:171:99:1681,0,2419 18 43307338 rs11877086 C A 2575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.409;SOR=0.626 GT:AD:DP:GQ:PL 0/1:118,120:238:99:2604,0,2852 18 43316538 rs2298718 A G 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.691;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-1.764;SOR=0.718 GT:AD:DP:GQ:PL 0/1:84,60:144:99:1375,0,1936 18 43319274 rs17675299 G A 1753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.48;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.547;SOR=0.92 GT:AD:DP:GQ:PL 0/1:96,76:172:99:1782,0,2252 18 43319519 rs1058396 G A 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.171;SOR=0.622 GT:AD:DP:GQ:PL 0/1:55,57:112:99:1467,0,1433 18 43445730 rs11333207 CA C 126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.04;ReadPosRankSum=0.958;SOR=0.746 GT:AD:DP:GQ:PL 0/1:48,14:85:99:155,0,1030 18 43497710 rs3744998 A G 1402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.456;SOR=0.675 GT:AD:DP:GQ:PL 0/1:61,60:121:99:1431,0,1500 18 43547127 rs11301517 TG T 4775.73 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=32.49;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4813,442,0 18 43669980 rs2298787 T C 2889.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.82;SOR=1.32 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2918,248,0 18 43833701 rs34068795 T TCTG 5496.73 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.69;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,123:123:99:5534,370,0 18 44063718 rs143514947 AC A 2315.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.453;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=2.146;QD=14.56;ReadPosRankSum=1.293;SOR=0.765 GT:AD:DP:GQ:PL 0/1:75,84:159:99:2353,0,2448 18 44126909 rs1893566 T C 7770.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7799,809,0 18 44126946 rs200068167 C T 2732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=1.009;SOR=0.584 GT:AD:DP:GQ:PL 0/1:113,121:234:99:2761,0,2819 18 44424105 rs34052557 G GA 84.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.812;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=4.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.3;ReadPosRankSum=1.021;SOR=0.793 GT:AD:DP:GQ:PL 0/1:10,6:20:99:122,0,202 18 44549025 . T TGC 1924.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DP=411;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.06;MQRankSum=3.054;QD=4.74;ReadPosRankSum=0.967;SOR=0.046 GT:AD:DP:GQ:PL 0/1:334,72:406:99:1962,0,13821 18 44560300 rs3744863 C T 13883.8 PASS AC=2;AF=1;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=29.86;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,465:465:99:13912,1394,0 18 44560429 rs892586 C A 6435.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6464,611,0 18 44560875 rs2010834 C A 9888.77 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.889 GT:AD:DP:GQ:PL 1/1:0,321:321:99:9917,963,0 18 44561100 rs2571028 C G 17156.8 PASS AC=2;AF=1;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,556:556:99:17185,1669,0 18 44561516 rs2571027 C G 13361.8 PASS AC=2;AF=1;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.42;QD=33.57;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,398:398:99:13390,1194,0 18 44585955 rs7233515 G A 2441.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2470,257,0 18 44635048 rs2635058 C T 2158.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.68;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2187,233,0 18 44771849 rs202058415 AT A 381.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.161;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.53;ReadPosRankSum=1.492;SOR=0.573 GT:AD:DP:GQ:PL 0/1:46,23:95:99:419,0,874 18 46163049 rs2277712 C T 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.09;ReadPosRankSum=-0.368;SOR=0.722 GT:AD:DP:GQ:PL 0/1:97,60:157:99:1141,0,2268 18 46284587 rs1038308 T C 2807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=4.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-1.666;SOR=0.701 GT:AD:DP:GQ:PL 0/1:121,115:236:99:2836,0,2910 18 46343666 rs3764481 C T 3067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=-0.557;SOR=0.714 GT:AD:DP:GQ:PL 0/1:108,129:237:99:3096,0,2531 18 46385948 rs3752082 A G 4126.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=1.117 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4155,431,0 18 47014953 rs35737964 G GTGT 843.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=3.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.44;ReadPosRankSum=-0.406;SOR=0.942 GT:AD:DP:GQ:PL 0/1:14,22:36:99:881,0,641 18 47017820 rs1943676 A G 2181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.94;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=2.443;SOR=0.766 GT:AD:DP:GQ:PL 0/1:87,96:183:99:2210,0,2065 18 47313642 rs71169448 A AC 361.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.889;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=1.543;QD=7.09;ReadPosRankSum=-0.208;SOR=0.671 GT:AD:DP:GQ:PL 0/1:27,24:51:99:399,0,692 18 47375932 rs488890 C G 576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.37;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.48;ReadPosRankSum=-0.565;SOR=0.619 GT:AD:DP:GQ:PL 0/1:41,27:68:99:605,0,1030 18 47405297 . C A 2097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.555;ClippingRankSum=0;DP=145;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.47;ReadPosRankSum=-0.998;SOR=0.569 GT:AD:DP:GQ:PL 0/1:58,87:145:99:2126,0,1469 18 47455923 rs2298628 C T 1254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.464;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.54;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-1.088;QD=11.51;ReadPosRankSum=2.691;SOR=0.656 GT:AD:DP:GQ:PL 0/1:49,60:109:99:1283,0,1302 18 47455980 rs56278513 GA G 637.37 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=0.491;QD=15.93;ReadPosRankSum=-0.205;SOR=0.962 GT:AD:DP:GQ:PL 0/1:9,31:55:70:666,0,70 18 47563299 rs1815930 T C 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3573,339,0 18 47787622 rs71169499 CAA C 2379.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=41.03;ReadPosRankSum=0;SOR=0.563 GT:AD:DP:GQ:PL 1/1:1,57:97:99:2242,217,0 18 47810251 rs3819217 C G 4415.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4444,437,0 18 47810351 rs7228084 A G 5301.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5330,522,0 18 47810731 rs2276367 T C 4403.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=3.568;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.23;ReadPosRankSum=1.526;SOR=0.65 GT:AD:DP:GQ:PL 1/1:1,140:141:99:4432,386,0 18 47908556 rs6507992 G A 1435.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1464,144,0 18 48327815 rs2276186 G A 1235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-0.634;SOR=0.671 GT:AD:DP:GQ:PL 0/1:89,60:149:99:1264,0,2111 18 48331524 rs2586776 G A 847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.647;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.089;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.061;SOR=1.136 GT:AD:DP:GQ:PL 0/1:55,37:92:99:876,0,1397 18 48331553 rs2849233 T C 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.097;SOR=0.941 GT:AD:DP:GQ:PL 0/1:63,44:107:99:1123,0,1606 18 48446953 rs674210 C T 732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.208;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-0.629;SOR=0.465 GT:AD:DP:GQ:PL 0/1:45,30:75:99:761,0,1372 18 48458662 rs649224 G A 1064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=7.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-1.956;SOR=1.153 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1093,0,1411 18 48723217 rs35675106 C T 8522.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.13;SOR=1.087 GT:AD:DP:GQ:PL 1/1:0,303:303:99:8551,894,0 18 49867224 rs9951523 T C 3154.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=28.68;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3183,329,0 18 50278686 rs13381333 G A 1987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.845;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=0.426;SOR=0.62 GT:AD:DP:GQ:PL 0/1:62,80:142:99:2016,0,1383 18 50450240 rs2276204 T G 1902.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.107 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1931,183,0 18 50832102 rs1431196 A G 3776.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3805,380,0 18 50929276 rs72933411 A G 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.822;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-1.003;SOR=0.786 GT:AD:DP:GQ:PL 0/1:44,43:88:99:1059,0,967 18 50936994 rs2229082 T C 2241.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2270,228,0 18 50937026 rs11873515 A G 1820.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1849,186,0 18 51750584 . T TGCC 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.437;ClippingRankSum=0;DP=70;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.5;MQ=61.07;MQRankSum=3.185;QD=14.81;ReadPosRankSum=-0.384;SOR=1.187 GT:AD:DP:GQ:PL 0/1:35,25:62:99:917,0,1470 18 51795957 rs10584411 GCGA G 3123.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=2.73;MLEAC=1;MLEAF=0.5;MQ=60.71;MQRankSum=3.304;QD=19.05;ReadPosRankSum=-0.096;SOR=0.51 GT:AD:DP:GQ:PL 0/1:79,85:164:99:3161,0,3124 18 51820805 rs8305 G A 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.731;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=4.989;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=0.721;SOR=0.869 GT:AD:DP:GQ:PL 0/1:46,53:99:99:1252,0,1252 18 51858197 rs17470798 A G 1438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.452;SOR=0.872 GT:AD:DP:GQ:PL 0/1:74,65:139:99:1467,0,1617 18 52258548 rs35428499 T C 2109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.842;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-1.197;SOR=0.744 GT:AD:DP:GQ:PL 0/1:93,83:176:99:2138,0,2114 18 52575002 rs1944382 G A 1619.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1648,168,0 18 52608329 rs8087479 C A 2195.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.78;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2224,245,0 18 53303101 rs611326 C G 5527.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5556,561,0 18 54339818 rs568078 C G 5185.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5214,540,0 18 54354074 rs1943016 C T 3929.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.17;SOR=1.836 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,87:87:99:1|1:54354074_C_T:3958,265,0 18 54354076 rs5825199 T TTC 3992.73 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.37;SOR=1.863 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,88:88:99:1|1:54354074_C_T:4030,271,0 18 54359062 rs2110414 G A 2567.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2596,275,0 18 54448778 rs2302845 G A 2237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.249;SOR=0.829 GT:AD:DP:GQ:PL 0/1:114,100:214:99:2266,0,2682 18 54694452 rs3745033 C T 6173.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=1.14 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6202,606,0 18 54814730 rs58215084 G A 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.9;SOR=0.835 GT:AD:DP:GQ:PL 0/1:142,105:247:99:2320,0,3513 18 54814771 rs79220676 G A 2652.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.641;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=1.111;SOR=0.869 GT:AD:DP:GQ:PL 0/1:162,109:271:99:2681,0,3839 18 54815025 rs11151997 G T 2357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=-0.213;SOR=0.869 GT:AD:DP:GQ:PL 0/1:165,112:277:99:2386,0,3973 18 55027212 rs1942964 T G 2635.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2664,279,0 18 55143766 rs3745074 C T 2062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.87;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.547;SOR=0.868 GT:AD:DP:GQ:PL 0/1:108,92:200:99:2091,0,2594 18 55221648 rs536560 T C 1244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.57;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=-0.239;SOR=0.698 GT:AD:DP:GQ:PL 0/1:65,58:123:99:1273,0,1500 18 55226383 rs536765 G C 1112.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-1.435;SOR=0.659 GT:AD:DP:GQ:PL 0/1:51,50:101:99:1141,0,1299 18 55238820 rs2272783 A G 1214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.831;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.993;SOR=0.789 GT:AD:DP:GQ:PL 0/1:47,47:94:99:1243,0,1204 18 55254104 rs17063905 T C 3601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=0.743;SOR=0.609 GT:AD:DP:GQ:PL 0/1:107,154:261:99:3630,0,2344 18 55268866 rs2070109 C T 1338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.321;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.068;SOR=0.591 GT:AD:DP:GQ:PL 0/1:49,53:102:99:1367,0,1211 18 55315959 rs12958967 G A 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.335;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=-0.576;SOR=0.561 GT:AD:DP:GQ:PL 0/1:62,72:134:99:1716,0,1716 18 55317676 rs222581 C T 4658.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4687,471,0 18 55335786 . T TAAAA 947.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.244;ClippingRankSum=0;DP=47;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=0;QD=72.9;ReadPosRankSum=-1.613;SOR=0.321 GT:AD:DP:GQ:PL 1/1:1,12:28:28:871,28,0 18 55362532 rs319443 T G 3414.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3443,334,0 18 55364830 rs319439 G A 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=1.229;SOR=0.528 GT:AD:DP:GQ:PL 0/1:65,42:107:99:1002,0,1733 18 55364852 rs319438 A G 3903.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3932,390,0 18 55816791 rs4149601 G A 1096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=1.259;SOR=0.403 GT:AD:DP:GQ:PL 0/1:46,48:94:99:1125,0,1218 18 56149099 rs7240666 T C 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=0.06;SOR=0.657 GT:AD:DP:GQ:PL 0/1:87,73:160:99:1535,0,2002 18 56196451 rs7236563 C T 3292.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3321,338,0 18 56202059 rs10469211 A G 5787.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.05;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5816,510,0 18 56202418 rs10469212 T C 6790.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.34;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6819,630,0 18 56202768 rs3809983 C A 6918.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6947,680,0 18 56202982 rs3826594 A T 7144.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7173,687,0 18 56203074 rs3809982 G A 7205.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7234,716,0 18 56203120 rs3809981 C T 7210.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7239,682,0 18 56203136 rs56145533 T C 2893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.621;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=0.951;SOR=0.788 GT:AD:DP:GQ:PL 0/1:92,111:203:99:2922,0,2170 18 56203411 rs3809980 G C 6593.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.48;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6622,609,0 18 56203447 rs3809979 A G 6173.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6202,584,0 18 56203891 rs3809978 G T 10927.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.943;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=3.173;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=44.6;ReadPosRankSum=2.286;SOR=0.355 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,244:245:99:1|1:56203891_G_T:10956,748,0 18 56203898 rs3809977 T G 10671.8 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.28;SOR=0.824 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,241:241:99:1|1:56203891_G_T:10700,725,0 18 56204250 rs3809976 A C 6780.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=30;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6809,677,0 18 56204387 rs67804623 ACAGTTGATGTGTCCT A 8858.73 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=44.97;SOR=0.788 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,197:197:99:1|1:56204387_ACAGTTGATGTGTCCT_A:8896,607,0 18 56204410 rs55910046 C T 9058.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.41;SOR=0.795 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,204:204:99:1|1:56204387_ACAGTTGATGTGTCCT_A:9087,624,0 18 56204671 rs4940404 A T 6301.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6330,643,0 18 56204747 rs3826593 G A 5483.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5512,545,0 18 56204794 rs56390741 C T 3599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.69;ReadPosRankSum=-1.348;SOR=0.593 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,92:166:99:0|1:56204794_C_T:3628,0,2843 18 56204796 rs34109891 T G 3599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.988;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.43;ReadPosRankSum=-1.526;SOR=0.547 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,94:168:99:0|1:56204794_C_T:3628,0,2843 18 56204932 rs3809973 T G 4275.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.76;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4304,369,0 18 56204945 rs3809972 C G 4435.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.65;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4464,384,0 18 56204977 rs3809971 C T 4440.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.95;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4469,417,0 18 56204991 rs3809970 C T 4694.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4723,461,0 18 56205262 rs12103986 A C 6089.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6118,591,0 18 56246442 rs12606191 T C 2433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.192;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.01;SOR=0.795 GT:AD:DP:GQ:PL 0/1:126,111:237:99:2462,0,2889 18 56246818 rs79863383 G A 3587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.981;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-1.14;SOR=0.594 GT:AD:DP:GQ:PL 0/1:168,161:329:99:3616,0,4585 18 56247180 rs9958735 T C 3415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.718;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=5.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=-0.799;SOR=0.928 GT:AD:DP:GQ:PL 0/1:123,123:246:99:3444,0,2976 18 56247567 rs9956630 A G 3161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.705;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-1.216;SOR=0.698 GT:AD:DP:GQ:PL 0/1:116,125:241:99:3190,0,2822 18 56247600 rs9944810 C A 2823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.343;SOR=0.624 GT:AD:DP:GQ:PL 0/1:112,114:226:99:2852,0,2786 18 56279025 rs6566987 T G 1171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-2.521;SOR=0.616 GT:AD:DP:GQ:PL 0/1:51,50:101:99:1200,0,1276 18 56400826 rs28740963 T C 581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.078;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-1.292;SOR=0.693 GT:AD:DP:GQ:PL 0/1:22,22:44:99:610,0,575 18 56887507 rs1062557 C A 4761.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=1.387 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4790,485,0 18 56936395 rs7226481 T C 5825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.86;ClippingRankSum=0;DB;DP=437;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=1.019;SOR=0.648 GT:AD:DP:GQ:PL 0/1:198,239:437:99:5854,0,4548 18 56940307 rs2271733 G T 3297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.028;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.715;SOR=0.836 GT:AD:DP:GQ:PL 0/1:156,132:288:99:3326,0,3971 18 57000303 rs2298712 G A 614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.487;SOR=0.844 GT:AD:DP:GQ:PL 0/1:32,26:58:99:643,0,874 18 57014812 rs11354119 TA T 63.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.92;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.616;QD=1.12;ReadPosRankSum=-0.122;SOR=1.3 GT:AD:DP:GQ:PL 0/1:45,12:63:99:101,0,1074 18 57026436 rs1043302 C T 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.508;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-2.471;SOR=0.539 GT:AD:DP:GQ:PL 0/1:93,91:184:99:2327,0,2286 18 59166541 rs12964819 C T 4065.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4094,396,0 18 59170304 rs595093 C G 3757.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3786,363,0 18 59483310 rs4362478 G A 2236.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.192;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=0.761;SOR=0.799 GT:AD:DP:GQ:PL 0/1:132,95:227:99:2265,0,3260 18 59739962 rs112622481 T TA 318.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.188;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=6.729;MLEAC=1;MLEAF=0.5;MQ=60.41;MQRankSum=1.43;QD=7.59;ReadPosRankSum=-0.49;SOR=1.781 GT:AD:DP:GQ:PL 0/1:23,19:47:99:356,0,428 18 59780393 rs3862712 T A 1222.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.687;SOR=0.831 GT:AD:DP:GQ:PL 0/1:55,59:114:99:1251,0,1217 18 59805532 rs9959632 T C 1166.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=1.347 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1195,123,0 18 59807635 rs12608212 T C 216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.714;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=-0.41;SOR=0.942 GT:AD:DP:GQ:PL 0/1:14,10:24:99:245,0,288 18 59814268 rs9320000 G A 854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=-0.674;SOR=0.678 GT:AD:DP:GQ:PL 0/1:27,35:62:99:883,0,729 18 59814324 rs9320001 G C 1444.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1473,138,0 18 60027171 rs6567272 C T 793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-1.066;SOR=0.613 GT:AD:DP:GQ:PL 0/1:47,40:87:99:822,0,1141 18 60027241 rs1805034 C T 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.063;SOR=0.618 GT:AD:DP:GQ:PL 0/1:75,64:139:99:1389,0,1751 18 60036083 rs8092336 A G 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.76;SOR=0.726 GT:AD:DP:GQ:PL 0/1:125,113:238:99:2723,0,3063 18 60191428 rs7229802 G A 3482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.71;ReadPosRankSum=1.38;SOR=0.73 GT:AD:DP:GQ:PL 0/1:120,134:254:99:3511,0,3304 18 60562298 rs624821 A T 2478.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2507,246,0 18 60572437 rs3217528 GT G 1048.73 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.39;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,43:45:99:1086,134,0 18 60985879 rs1801018 T C 5185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.3;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=3.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=1.19;SOR=0.802 GT:AD:DP:GQ:PL 0/1:145,206:351:99:5214,0,3574 18 61022791 rs2003149 C T 280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.542;ClippingRankSum=0;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.053;SOR=0.836 GT:AD:DP:GQ:PL 0/1:14,13:27:99:309,0,265 18 61156606 rs12454742 G C 766.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.3;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.558;SOR=0.955 GT:AD:DP:GQ:PGT:PID:PL 0/1:29,31:60:99:1|0:61156605_C_T:795,0,762 18 61160287 rs2289519 T C 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.93;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.471;SOR=0.744 GT:AD:DP:GQ:PL 0/1:66,78:144:99:1779,0,1517 18 61170721 rs1455556 T C 2136.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.511;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.79;ReadPosRankSum=-0.374;SOR=0.602 GT:AD:DP:GQ:PL 0/1:66,89:155:99:2165,0,1695 18 61170925 rs8093128 T C 4563.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4592,441,0 18 61264298 rs1020694 G A 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.564;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=4.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-2.868;SOR=1.047 GT:AD:DP:GQ:PL 0/1:115,73:188:99:1740,0,2774 18 61264468 rs1020693 C T 2517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.277;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-1.335;SOR=0.668 GT:AD:DP:GQ:PL 0/1:108,100:208:99:2546,0,2597 18 61309139 rs2518060 G A 1216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.809;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=6.916;MLEAC=1;MLEAF=0.5;MQ=51.59;MQRankSum=-4.633;QD=11.37;ReadPosRankSum=-1.021;SOR=1.433 GT:AD:DP:GQ:PL 0/1:59,48:107:99:1245,0,1618 18 61323012 rs3180227 C G 2720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.256;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.81;ReadPosRankSum=0.896;SOR=0.763 GT:AD:DP:GQ:PL 0/1:103,94:197:99:2749,0,2766 18 61326628 rs11370831 A AT 4657.73 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.79;QD=34.25;SOR=1.273 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4695,409,0 18 61377579 rs1395268 A C 3636.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3665,338,0 18 61379838 rs4940595 T G 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.39;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.669;SOR=0.667 GT:AD:DP:GQ:PL 0/1:76,58:134:99:1416,0,1831 18 61383354 rs17071550 C T 547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.45;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=1.766;SOR=1.011 GT:AD:DP:GQ:PL 0/1:40,24:64:99:576,0,909 18 61387312 rs1506418 G A 1054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.24;ReadPosRankSum=-0.522;SOR=0.693 GT:AD:DP:GQ:PL 0/1:78,50:128:99:1083,0,2126 18 61387333 rs1506419 T A 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=-2.715;SOR=0.716 GT:AD:DP:GQ:PL 0/1:74,45:119:99:1022,0,1920 18 61387389 rs1506420 G A 479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=6.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.85;ReadPosRankSum=1.596;SOR=0.266 GT:AD:DP:GQ:PL 0/1:57,25:82:99:508,0,1534 18 61388052 rs7239229 T C 905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=-0.506;SOR=0.705 GT:AD:DP:GQ:PL 0/1:27,36:63:99:934,0,664 18 61390316 rs1395265 C A 4618.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4647,435,0 18 61390332 rs1395266 C T 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4590,426,0 18 61390361 rs1395267 T C 5604.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5633,519,0 18 61390570 rs953695 T G 4758.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4787,464,0 18 61390649 rs953696 C T 2633.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.554 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2662,249,0 18 61465822 rs113041735 A AT 785.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.442;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=0.88;SOR=1.119 GT:AD:DP:GQ:PL 0/1:40,36:78:99:823,0,771 18 61471529 rs61735186 C T 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.229;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=1.932;SOR=0.591 GT:AD:DP:GQ:PL 0/1:56,57:113:99:1303,0,1227 18 61650865 rs11537989 G A 3145.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3174,329,0 18 61654297 rs3169983 A G 1708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=4.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-0.489;SOR=0.392 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1737,0,1941 18 61654463 rs3826616 A G 2039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=3.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.954;SOR=0.509 GT:AD:DP:GQ:PL 0/1:102,93:195:99:2068,0,2358 18 63489378 rs8097752 C T 3010.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3039,315,0 18 63530016 rs2291343 A G 4975.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.032;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.91;ReadPosRankSum=1.2;SOR=0.731 GT:AD:DP:GQ:PL 1/1:2,159:161:99:5004,434,0 18 64176365 rs1055335 G T 1355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.436;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.68;ReadPosRankSum=0.294;SOR=0.613 GT:AD:DP:GQ:PL 0/1:83,57:140:99:1384,0,2017 18 65179829 rs2279269 G A 4003.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4032,390,0 18 66504093 rs485613 A C 5428.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.006;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.83;ReadPosRankSum=0.291;SOR=0.228 GT:AD:DP:GQ:PL 1/1:1,181:182:99:5457,536,0 18 66504351 rs637051 G A 5402.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5431,504,0 18 66504459 rs572020 A T 4987.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5016,501,0 18 66513615 rs2187094 A G 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=0.706;SOR=0.744 GT:AD:DP:GQ:PL 0/1:65,60:125:99:1327,0,1489 18 66513662 rs1977942 T C 1158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.146;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=-1.574;SOR=0.796 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1187,0,994 18 66678326 rs3763951 T C 1497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.84;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=5.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.941;SOR=0.945 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1526,0,1996 18 67345034 rs8099030 T C 4022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.743;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-2.254;SOR=0.659 GT:AD:DP:GQ:PL 0/1:149,172:321:99:4051,0,3273 18 67365668 rs4426448 A G 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-0.99;SOR=0.69 GT:AD:DP:GQ:PL 0/1:82,66:148:99:1420,0,1989 18 67531642 rs763361 T C 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.218;SOR=0.449 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1138,0,1317 18 67540368 rs1788101 T G 492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.981;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=0.606;SOR=0.76 GT:AD:DP:GQ:PL 0/1:15,20:35:99:521,0,340 18 67687860 rs2304378 T C 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.72;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=0.021;SOR=0.908 GT:AD:DP:GQ:PL 0/1:52,64:116:99:1677,0,1256 18 67718688 rs4891392 A G 5079.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,163:163:99:5108,489,0 18 67753930 . TAAAAAAAAAAAAAAA T 257.73 PASS AC=2;AF=1;AN=2;DP=20;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=64.43;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,4:7:24:271,24,0 18 67801786 rs75225724 T C 742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.071;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.26;ReadPosRankSum=-1.791;SOR=1.127 GT:AD:DP:GQ:PL 0/1:26,30:56:99:771,0,505 18 67817837 rs117843366 G A 748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.903;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=-0.278;SOR=0.532 GT:AD:DP:GQ:PL 0/1:51,35:86:99:777,0,1432 18 67863850 rs74941514 T TCTC 3965.73 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=47.21;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,84:84:99:4003,279,0 18 67871343 rs3911730 A C 3901.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.086;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.69;ReadPosRankSum=2.247;SOR=0.345 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3930,396,0 18 67992279 rs2231562 G A 2817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.031;SOR=0.947 GT:AD:DP:GQ:PL 0/1:117,116:233:99:2846,0,2980 18 70209321 rs7237888 C A 7811.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7840,793,0 18 70417396 rs922999 C T 5044.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5073,528,0 18 70532185 . TAA T,TA 2052.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0;DP=133;ExcessHet=3.0103;FS=1.432;MLEAC=1,1;MLEAF=0.5,0.5;MQ=59.98;MQRankSum=0.327;QD=18.83;ReadPosRankSum=-2.34;SOR=1.069 GT:AD:DP:GQ:PL 1/2:9,23,77:113:99:2090,1437,1786,348,0,254 18 70532840 rs10164255 T G 3714.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3743,350,0 18 71749154 rs3831448 G GT 578.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.813;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=5.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=-1.355;SOR=1.345 GT:AD:DP:GQ:PL 0/1:33,26:61:99:616,0,777 18 71825718 . T TAATCA 766.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=1.315;QD=13.22;ReadPosRankSum=-1.082;SOR=0.665 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,22:58:99:0|1:71825718_T_TAATCA:804,0,5449 18 71825720 . G GCAAGCA 766.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.413;ClippingRankSum=0;DP=57;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.915;SOR=0.714 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,20:56:99:0|1:71825718_T_TAATCA:804,0,5449 18 72020475 rs8093010 T C 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.631;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-1.124;SOR=0.728 GT:AD:DP:GQ:PL 0/1:47,43:90:99:1053,0,1034 18 72021717 rs12606060 T C 1058.77 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.09;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1087,96,0 18 72103782 rs2278154 T C 5731.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5760,555,0 18 72114455 rs8087020 C T 8583.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.05;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,306:306:99:8612,912,0 18 72186175 rs5826329 T TC 1466.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.341;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-1.92;SOR=1.009 GT:AD:DP:GQ:PL 0/1:80,61:141:99:1504,0,2011 18 72223591 rs10663835 G GTGC 3136.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.56;ReadPosRankSum=0.969;SOR=0.862 GT:AD:DP:GQ:PL 0/1:87,82:175:99:3174,0,3534 18 72226539 rs12607796 T C 889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.94;ReadPosRankSum=0.703;SOR=0.609 GT:AD:DP:GQ:PL 0/1:67,45:112:99:918,0,1618 18 72228124 rs4263028 A G 5125.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.212 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5154,518,0 18 72228269 rs4329999 G A 2147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-0.639;SOR=0.556 GT:AD:DP:GQ:PL 0/1:122,95:217:99:2176,0,2944 18 72234635 rs12960862 C T 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.717;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=0.17;SOR=0.965 GT:AD:DP:GQ:PL 0/1:97,77:174:99:1740,0,2211 18 72238472 rs73973908 C A 846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-1.264;SOR=0.574 GT:AD:DP:GQ:PL 0/1:29,41:70:99:875,0,575 18 72343008 rs7243081 T C 5042.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5071,522,0 18 72343181 rs3794942 A G 2007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.682;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.799;SOR=0.793 GT:AD:DP:GQ:PL 0/1:117,87:204:99:2036,0,2793 18 72344223 rs3794941 T C 1906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=2.131;SOR=0.638 GT:AD:DP:GQ:PL 0/1:96,87:185:99:1935,0,2509 18 72345890 rs948615 A C 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.893;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=0.939;SOR=0.608 GT:AD:DP:GQ:PL 0/1:88,94:182:99:2402,0,2182 18 72347482 rs12327359 T C 8524.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8553,811,0 18 72776121 rs3744913 G A 2969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=14.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-2.093;SOR=0.655 GT:AD:DP:GQ:PL 0/1:118,117:235:99:2998,0,3102 18 72914280 rs7230037 G A 1014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.98;ReadPosRankSum=-2.671;SOR=0.913 GT:AD:DP:GQ:PL 0/1:69,44:113:99:1043,0,1995 18 72997677 rs3826609 C T 6634.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=28.23;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6663,704,0 18 72998004 rs3744908 T C 8229.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.046 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8258,822,0 18 72998268 rs3744909 T C 6953.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6982,684,0 18 72998886 rs3809997 T C 8388.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8417,825,0 18 72999359 rs55679337 T C 8079.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8108,831,0 18 74090957 rs56087742 CG C 9255.73 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=31.06;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9293,896,0 18 74583670 rs139229108 A C 1933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.566;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.502;SOR=0.873 GT:AD:DP:GQ:PL 0/1:78,81:159:99:1962,0,1645 18 74592236 . G T 2547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.211;ClippingRankSum=0;DP=244;ExcessHet=3.0103;FS=0.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-1.209;SOR=0.789 GT:AD:DP:GQ:PL 0/1:128,116:244:99:2576,0,2998 18 74611127 rs608433 A G 5771.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5800,579,0 18 74671768 rs470403 T C 2434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.824;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=0.163;SOR=0.806 GT:AD:DP:GQ:PL 0/1:84,94:178:99:2463,0,1960 18 74680208 rs73968242 C T 2247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=1.1;SOR=0.566 GT:AD:DP:GQ:PL 0/1:93,97:190:99:2276,0,2226 18 74680259 rs657066 C T 5860.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,207:207:99:5889,620,0 18 74962645 rs5374 T C 8237.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.32;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8266,841,0 18 74980809 rs5376 G A 4154.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4183,413,0 18 76753588 rs7240860 A G 10824.8 PASS AC=2;AF=1;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,338:338:99:10853,1013,0 18 76753768 rs2447437 C G 9396.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.44;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=6.965;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.74;ReadPosRankSum=-0.962;SOR=0.502 GT:AD:DP:GQ:PL 1/1:2,314:316:99:9425,919,0 18 76754466 rs2472644 C T 5321.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=3.816 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5350,543,0 18 76829525 rs4078115 A G 1249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.792;QD=8.06;ReadPosRankSum=-0.595;SOR=0.683 GT:AD:DP:GQ:PL 0/1:94,61:155:99:1278,0,2479 18 76829549 . C CG 2652.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DP=128;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.827;QD=21.05;ReadPosRankSum=1.479;SOR=0.43 GT:AD:DP:GQ:PL 0/1:50,76:126:99:2690,0,1556 18 76870347 rs617890 T G 828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.157;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=0.323;SOR=1.044 GT:AD:DP:GQ:PL 0/1:51,34:85:99:857,0,1222 18 76870397 rs492657 G A 1259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.055;SOR=0.762 GT:AD:DP:GQ:PL 0/1:56,58:114:99:1288,0,1359 18 77097360 rs585033 A T 3081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=1.803;SOR=0.675 GT:AD:DP:GQ:PL 0/1:127,133:260:99:3110,0,3162 18 77107934 rs9965202 C T 2561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.225;SOR=0.666 GT:AD:DP:GQ:PL 0/1:110,100:210:99:2590,0,2853 18 77170542 rs55863211 C T 3496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=6.973;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-0.364;SOR=0.73 GT:AD:DP:GQ:PL 0/1:198,157:355:99:3525,0,4947 18 77171061 rs2230112 T G 10516.8 PASS AC=2;AF=1;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,330:330:99:10545,990,0 18 77246406 rs754093 T G 8541.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8570,867,0 18 77440128 rs17855830 T G 4561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.355;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.32;ReadPosRankSum=-0.178;SOR=0.522 GT:AD:DP:GQ:PGT:PID:PL 0/1:129,120:249:99:0|1:77440128_T_G:4590,0,7266 18 77440133 rs79644263 G C 4535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=3.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.82;ReadPosRankSum=0.272;SOR=0.487 GT:AD:DP:GQ:PGT:PID:PL 0/1:124,117:241:99:0|1:77440128_T_G:4564,0,7203 18 77470834 rs676713 C T 2462.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.99;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2491,264,0 18 77473127 rs2279103 C T 1284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.26;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=5.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.128;SOR=1.139 GT:AD:DP:GQ:PL 0/1:61,55:116:99:1313,0,1590 18 77475455 rs11549119 G A 2158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.14;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.12;ReadPosRankSum=0.493;SOR=0.669 GT:AD:DP:GQ:PL 0/1:168,98:266:99:2187,0,4302 18 77477515 rs8084175 C T 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=1.095;SOR=0.495 GT:AD:DP:GQ:PL 0/1:90,74:164:99:1791,0,2392 18 77478011 rs35456241 C T 2623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.602;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.025;SOR=0.624 GT:AD:DP:GQ:PL 0/1:114,114:228:99:2652,0,2957 18 77513721 rs626169 T C 10061.8 PASS AC=2;AF=1;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,351:351:99:10090,1053,0 18 77728135 rs2298645 G T 2202.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2231,225,0 18 77797321 rs748337 C T 3236.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.632 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3265,312,0 18 77805949 rs3744873 A C 8683.77 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8712,816,0 18 77896699 rs11411000 C CA 1188.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.23;ReadPosRankSum=-1.089;SOR=0.896 GT:AD:DP:GQ:PL 0/1:15,54:81:93:1226,0,93 19 110708 rs145455937 C G 1339.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.38;MQRankSum=-2.473;QD=3.1;ReadPosRankSum=-1.365;SOR=0.666 GT:AD:DP:GQ:PL 0/1:336,96:432:99:1368,0,8004 19 111016 rs200336441 T G 88.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.43;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.5;MQ=25.2;MQRankSum=0.507;QD=2.86;ReadPosRankSum=-0.396;SOR=1.489 GT:AD:DP:GQ:PL 0/1:24,7:31:99:117,0,625 19 282753 rs1138439 G A 3583.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3612,375,0 19 290947 rs8111051 C A 2203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=0.096;SOR=0.815 GT:AD:DP:GQ:PL 0/1:130,105:235:99:2232,0,3151 19 327260 . TA T 225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0;DP=170;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.07;ReadPosRankSum=1.155;SOR=0.911 GT:AD:DP:GQ:PL 0/1:86,23:142:99:254,0,1933 19 336102 rs35953308 C T 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=0.448;SOR=0.533 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1671,0,1735 19 374016 rs2303815 G A 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=-0.496;SOR=1.025 GT:AD:DP:GQ:PL 0/1:40,40:80:99:1116,0,998 19 407900 rs10411998 A G 8478.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8507,828,0 19 422128 rs117736448 C T 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.24;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=7.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=1.812;SOR=1.29 GT:AD:DP:GQ:PL 0/1:78,80:158:99:2063,0,2033 19 460668 rs189741717 C G 512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=4.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=0.188;SOR=0.205 GT:AD:DP:GQ:PL 0/1:37,27:64:99:541,0,993 19 460883 rs182361580 C T 1071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.516;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=2.024;SOR=0.834 GT:AD:DP:GQ:PL 0/1:46,54:100:99:1100,0,855 19 498524 rs2302217 A G 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-2.213;SOR=0.662 GT:AD:DP:GQ:PL 0/1:128,116:244:99:2751,0,3262 19 501762 . A AGGAGCCTCCCGACACCACCTCCCAGGAGCCTCCCGACACCACCTCCCC 3834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.147;ClippingRankSum=0;DP=359;ExcessHet=3.0103;FS=1.71;MLEAC=1;MLEAF=0.5;MQ=59.27;MQRankSum=-5.213;QD=16.39;ReadPosRankSum=-0.974;SOR=0.782 GT:AD:DP:GQ:PL 0/1:160,74:234:99:3863,0,6211 19 501900 rs3745925 C A 2416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.502;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=1.056;SOR=0.528 GT:AD:DP:GQ:PL 0/1:116,103:219:99:2445,0,3244 19 544140 rs892209 G A 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-0.138;SOR=0.529 GT:AD:DP:GQ:PL 0/1:52,69:121:99:1468,0,1113 19 549678 rs1599882 A G 4764.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.853 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4793,480,0 19 590172 rs113534512 G A 587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.77;ReadPosRankSum=-3.597;SOR=0.749 GT:AD:DP:GQ:PL 0/1:32,35:67:99:616,0,592 19 605171 rs12981860 T C 6375.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6404,630,0 19 613307 rs2301778 C T 2149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.537;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-0.935;QD=13.03;ReadPosRankSum=-1.832;SOR=0.801 GT:AD:DP:GQ:PL 0/1:78,87:165:99:2178,0,1902 19 613506 rs55989591 GCGCCTGGAGGGGGAGGGGGCA G 1439.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=11.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.85;ReadPosRankSum=1.858;SOR=0.865 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,37:63:99:0|1:613506_GCGCCTGGAGGGGGAGGGGGCA_G:1477,0,5223 19 613898 rs1054786 T C 2537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.019;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.877;QD=10.53;ReadPosRankSum=0.288;SOR=0.759 GT:AD:DP:GQ:PL 0/1:130,111:241:99:2566,0,3143 19 619021 rs14155 G C 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=1.716;SOR=0.713 GT:AD:DP:GQ:PL 0/1:83,90:173:99:2093,0,2011 19 619574 rs10853990 T G 2649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.179;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=4.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=1.475;SOR=0.474 GT:AD:DP:GQ:PL 0/1:127,114:241:99:2678,0,3074 19 619772 rs11669381 G C 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-0.265;SOR=0.744 GT:AD:DP:GQ:PL 0/1:126,90:216:99:2115,0,3260 19 620504 rs41549114 T C 2806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.172;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=2.174;SOR=0.635 GT:AD:DP:GQ:PL 0/1:77,109:186:99:2835,0,1716 19 621712 rs2238547 A G 3412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.405;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.5;MQ=55.85;MQRankSum=-11.841;QD=10.87;ReadPosRankSum=-0.423;SOR=0.793 GT:AD:DP:GQ:PL 0/1:170,144:314:99:3441,0,4218 19 622336 rs2238549 T G 2179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.362;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.5;MQ=58.8;MQRankSum=-4.11;QD=10.05;ReadPosRankSum=0.634;SOR=0.532 GT:AD:DP:GQ:PL 0/1:120,97:217:99:2208,0,2778 19 625198 rs1056766 A G 2128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-1.387;QD=11.76;ReadPosRankSum=-0.52;SOR=0.802 GT:AD:DP:GQ:PL 0/1:89,92:181:99:2157,0,2174 19 630130 rs140649984 C T 2491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0.04;QD=11.75;ReadPosRankSum=0.105;SOR=0.688 GT:AD:DP:GQ:PL 0/1:103,109:212:99:2520,0,2394 19 632915 rs12610885 G A 1337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.991;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=1.983;SOR=0.834 GT:AD:DP:GQ:PL 0/1:83,59:142:99:1366,0,2021 19 633529 rs144095976 G GGCGCCGCCGCCGCC,GGCGCCGCCGCCGCCGCCGCC 10298.7 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.09;QD=47.24;SOR=0.827 GT:AD:DP:GQ:PL 1/2:0,102,116:220:99:10336,5047,4658,4326,0,3890 19 652238 rs11554788 A G 1080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=4.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.58;ReadPosRankSum=-0.211;SOR=1.077 GT:AD:DP:GQ:PL 0/1:75,51:126:99:1109,0,1723 19 680378 rs7246311 C T 4634.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=29.52;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4663,469,0 19 687142 rs8102982 G A 6550.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6579,648,0 19 691909 rs4375794 T C 7376.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7405,725,0 19 731077 rs10405836 G C 3605.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=1.952 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:731077_G_C:3634,244,0 19 731078 rs2074355 G T 3605.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=1.952 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,81:81:99:1|1:731077_G_C:3634,244,0 19 731144 rs1050457 A G 3962.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3991,396,0 19 746712 rs10421265 C T 2088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-1.022;SOR=0.651 GT:AD:DP:GQ:PL 0/1:73,86:159:99:2117,0,1739 19 804396 rs3180287 C T 2561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.759;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=1.544;SOR=0.76 GT:AD:DP:GQ:PL 0/1:112,105:217:99:2590,0,3154 19 804642 rs3170451 C T 1857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.956;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-1.071;SOR=0.715 GT:AD:DP:GQ:PL 0/1:104,74:178:99:1886,0,2579 19 808586 rs13169 C G 3195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15;ReadPosRankSum=-1.149;SOR=0.799 GT:AD:DP:GQ:PL 0/1:90,123:213:99:3224,0,2261 19 808742 rs1135908 G T 2558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.449;SOR=0.804 GT:AD:DP:GQ:PL 0/1:92,103:195:99:2587,0,2348 19 812801 rs3746137 C G 2774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.401;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-1.369;SOR=0.612 GT:AD:DP:GQ:PL 0/1:154,124:278:99:2803,0,3533 19 814680 rs56944467 G T 2479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.275;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=2.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=1.74;SOR=0.741 GT:AD:DP:GQ:PL 0/1:158,111:269:99:2508,0,4154 19 815086 rs351988 A G 6932.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.86;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6961,634,0 19 829568 rs12460890 C T 2666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-1.932;SOR=0.881 GT:AD:DP:GQ:PL 0/1:146,116:262:99:2695,0,3715 19 829723 rs678976 A G 6472.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.36;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6501,582,0 19 830820 rs28626600 G A 3241.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=1.451;SOR=0.617 GT:AD:DP:GQ:PL 0/1:154,143:297:99:3270,0,3842 19 830854 rs595844 T C 9277.77 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9306,924,0 19 844020 rs351111 G A 3427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.847;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.272;SOR=0.746 GT:AD:DP:GQ:PL 0/1:180,146:326:99:3456,0,4358 19 860852 rs1629038 G C 2454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=5.955;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.517;SOR=0.41 GT:AD:DP:GQ:PL 0/1:100,97:199:99:2483,0,2596 19 871222 rs8100258 G A 2409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-1.689;SOR=0.968 GT:AD:DP:GQ:PL 0/1:105,95:200:99:2438,0,2728 19 872089 rs72984031 A G 2495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.072;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.501;SOR=0.557 GT:AD:DP:GQ:PL 0/1:107,107:214:99:2524,0,2411 19 880066 rs34799086 G A 3225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.885;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=3.052;SOR=0.694 GT:AD:DP:GQ:PL 0/1:151,136:287:99:3254,0,3616 19 885818 rs1060442 A G 8995.77 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,286:286:99:9024,856,0 19 886001 rs12462823 G C 3963.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=-1.782;SOR=0.679 GT:AD:DP:GQ:PL 0/1:136,156:292:99:3992,0,3510 19 920642 rs350132 T A 10070.8 PASS AC=2;AF=1;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,335:335:99:10099,1000,0 19 929678 rs3826948 G A 11033.8 PASS AC=2;AF=1;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,372:372:99:11062,1112,0 19 929753 rs1799595 A G 10337.8 PASS AC=2;AF=1;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,335:335:99:10366,1005,0 19 965043 rs12608658 T C 3457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.163;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=0.422;SOR=0.829 GT:AD:DP:GQ:PL 0/1:152,142:294:99:3486,0,3608 19 966693 rs6510986 C T 3774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=0.189;SOR=0.689 GT:AD:DP:GQ:PL 0/1:129,149:278:99:3803,0,3165 19 971933 rs1051504 A G 7129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.997;ClippingRankSum=0;DB;DP=426;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.65;ReadPosRankSum=2.023;SOR=0.568 GT:AD:DP:GQ:PL 0/1:216,188:404:99:7158,0,9694 19 971949 rs1051505 G A 7533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.966;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.47;ReadPosRankSum=1.134;SOR=0.628 GT:AD:DP:GQ:PL 0/1:197,190:387:99:7562,0,9534 19 984533 rs2301810 T C 7522.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.73;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,223:223:99:7551,669,0 19 984554 rs4806884 C G 6144.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.91;SOR=1.286 GT:AD:DP:GQ:PL 1/1:0,176:176:99:6173,528,0 19 984578 rs2301811 T G 5206.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.66;SOR=1.726 GT:AD:DP:GQ:PL 1/1:0,146:146:99:5235,439,0 19 990281 rs2158367 G A 7997.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,275:275:99:8026,823,0 19 1000420 rs112743753 A G 2103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=1.121;SOR=0.739 GT:AD:DP:GQ:PL 0/1:119,99:218:99:2132,0,2703 19 1000568 rs112236900 C A 967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=7.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.876;SOR=0.213 GT:AD:DP:GQ:PL 0/1:39,39:78:99:996,0,1113 19 1000785 rs12986002 C T 2463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.11;ReadPosRankSum=-0.519;SOR=0.593 GT:AD:DP:GQ:PL 0/1:42,102:144:99:2492,0,831 19 1000799 rs2301813 G C 2648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.438;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.31;ReadPosRankSum=1.438;SOR=0.655 GT:AD:DP:GQ:PL 0/1:46,107:153:99:2677,0,822 19 1003172 rs2240154 C T 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-1.027;SOR=0.784 GT:AD:DP:GQ:PL 0/1:96,81:177:99:2115,0,2433 19 1003221 rs35592366 C A 2636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.416;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.001;SOR=0.912 GT:AD:DP:GQ:PL 0/1:123,107:230:99:2665,0,2822 19 1004740 rs2240157 T C 3281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.582;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=0.774;SOR=0.678 GT:AD:DP:GQ:PL 0/1:131,132:263:99:3310,0,3038 19 1008683 rs2285906 G A 2805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.467;SOR=0.54 GT:AD:DP:GQ:PL 0/1:119,117:236:99:2834,0,3052 19 1008879 rs2285907 G C 4761.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.53;SOR=1.908 GT:AD:DP:GQ:PL 1/1:0,142:144:99:4790,426,0 19 1009485 rs10401245 C G 8858.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.933 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8887,855,0 19 1009585 rs10401454 C G 6648.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.216 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6677,660,0 19 1010691 rs2240159 A G 11879.8 PASS AC=2;AF=1;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,395:395:99:11908,1185,0 19 1011999 rs116854930 A G 12844.8 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.76;SOR=0.714 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,287:287:99:1|1:1011999_A_G:12873,864,0 19 1012002 rs117246624 A G 12811.8 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.11;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,284:284:99:1|1:1011999_A_G:12840,861,0 19 1014398 rs7146 A G 7930.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,267:267:99:7959,801,0 19 1032689 rs1141534 G T 3944.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=29.88;SOR=1.539 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3973,396,0 19 1036456 rs1064410 C G 10240.8 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.95;SOR=0.702 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,233:233:99:1|1:1036456_C_G:10269,701,0 19 1036468 rs1064411 A G 10193.8 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.13;SOR=0.792 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,231:231:99:1|1:1036456_C_G:10222,695,0 19 1036552 rs2304262 T C 9182.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.12;SOR=0.936 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,218:218:99:1|1:1036552_T_C:9211,659,0 19 1036575 rs2304260 G A 8159.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.59;SOR=1.058 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,183:183:99:1|1:1036552_T_C:8188,563,0 19 1037809 rs144570484 C T 2986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.363;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.802;SOR=0.725 GT:AD:DP:GQ:PL 0/1:161,128:289:99:3015,0,3902 19 1043324 rs11672201 C G 3643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=3.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.178;SOR=0.716 GT:AD:DP:GQ:PL 0/1:176,145:321:99:3672,0,4374 19 1044753 rs3764648 T C 8729.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8758,873,0 19 1047002 rs3752234 A G 3457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.435;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-1.277;SOR=0.852 GT:AD:DP:GQ:PL 0/1:131,133:264:99:3486,0,3293 19 1047161 rs3752237 A G 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.808;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=-0.666;SOR=1.025 GT:AD:DP:GQ:PL 0/1:89,62:151:99:1770,0,2594 19 1049012 rs4147912 A C 986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.44;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.22;ReadPosRankSum=-0.763;SOR=0.606 GT:AD:DP:GQ:PL 0/1:69,51:120:99:1015,0,1622 19 1049269 rs4147914 G A 2077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=5.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=1.714;SOR=1.127 GT:AD:DP:GQ:PL 0/1:91,88:179:99:2106,0,2339 19 1051137 rs9282562 CTG C 6098.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.452;QD=18.77;ReadPosRankSum=2.609;SOR=0.745 GT:AD:DP:GQ:PL 0/1:166,159:325:99:6136,0,6560 19 1052005 rs3764652 C T 3030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=1.606;SOR=0.742 GT:AD:DP:GQ:PL 0/1:120,121:241:99:3059,0,2964 19 1054060 rs3752243 A G 2928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.29;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=0.418;SOR=1.034 GT:AD:DP:GQ:PL 0/1:109,109:218:99:2957,0,2544 19 1055191 rs3745842 G A 3359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.145;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.095;SOR=0.745 GT:AD:DP:GQ:PL 0/1:152,135:287:99:3388,0,3552 19 1056065 rs881768 A G 4530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.58;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=7.777;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.408;QD=12.84;ReadPosRankSum=-0.9;SOR=0.702 GT:AD:DP:GQ:PL 0/1:175,178:353:99:4559,0,4375 19 1056492 rs3752246 G C 3778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.956;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=3.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=1.387;SOR=0.887 GT:AD:DP:GQ:PL 0/1:149,148:297:99:3807,0,3770 19 1059004 rs2279796 A G 4449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=6.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.998;SOR=0.475 GT:AD:DP:GQ:PL 0/1:173,186:359:99:4478,0,4288 19 1064193 rs4147930 G A 3143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=1.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-1.482;SOR=0.802 GT:AD:DP:GQ:PL 0/1:150,141:291:99:3172,0,3427 19 1065018 rs4147934 G T 9901.77 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,334:334:99:9930,1002,0 19 1067452 rs149152517 G A 1556.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.015;SOR=0.612 GT:AD:DP:GQ:PL 0/1:88,64:152:99:1585,0,2509 19 1068734 rs3764653 T C 8484.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.19;SOR=1.387 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,192:192:99:1|1:1068734_T_C:8513,578,0 19 1068738 rs1801284 G A 8390.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.6;SOR=1.46 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,184:184:99:1|1:1068734_T_C:8419,569,0 19 1071312 rs4807506 C T 6571.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6600,644,0 19 1074000 rs2074442 A T 7917.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=1.326 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7946,752,0 19 1074252 rs11084881 T G 7802.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.35;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7831,702,0 19 1077985 rs7251797 A G 4626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.387;ClippingRankSum=0;DB;DP=352;ExcessHet=3.0103;FS=5.467;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=1.662;SOR=0.489 GT:AD:DP:GQ:PL 0/1:158,193:351:99:4655,0,3867 19 1080311 rs2074454 G C 8049.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,267:267:99:8078,801,0 19 1081617 rs10404947 A G 5972.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6001,561,0 19 1082988 . T A 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0;DP=217;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.419;SOR=0.641 GT:AD:DP:GQ:PL 0/1:109,108:217:99:2499,0,2623 19 1085966 rs3761028 A G 2430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.473;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.092;SOR=0.56 GT:AD:DP:GQ:PL 0/1:131,99:230:99:2459,0,3167 19 1094004 rs12459404 G A 7655.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,271:271:99:7684,809,0 19 1104078 rs4807542 G A 1378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.349;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.67;ReadPosRankSum=-1.565;SOR=0.965 GT:AD:DP:GQ:PL 0/1:37,51:88:99:1407,0,956 19 1106477 rs8178977 G C 2034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-1.578;SOR=0.746 GT:AD:DP:GQ:PL 0/1:99,85:184:99:2063,0,2386 19 1106615 rs713041 T C 1513.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.622;SOR=0.926 GT:AD:DP:GQ:PL 0/1:77,66:143:99:1542,0,1962 19 1109213 rs2159133 A G 5774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.71;ReadPosRankSum=-0.589;SOR=0.73 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,151:293:99:0|1:1109213_A_G:5803,0,7304 19 1109215 rs11669443 G A 5774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.78;ReadPosRankSum=0.04;SOR=0.721 GT:AD:DP:GQ:PGT:PID:PL 0/1:146,146:292:99:0|1:1109213_A_G:5803,0,7304 19 1110829 rs2302109 G A 1907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.756;SOR=0.659 GT:AD:DP:GQ:PL 0/1:114,85:199:99:1936,0,2969 19 1116935 rs7251039 G A 1694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.122;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.13;ReadPosRankSum=0.889;SOR=0.509 GT:AD:DP:GQ:PL 0/1:43,69:112:99:1723,0,1068 19 1119019 rs2074920 C T 2329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.782;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.15;SOR=0.741 GT:AD:DP:GQ:PL 0/1:110,93:203:99:2358,0,2745 19 1119963 rs2074921 A G 1877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.032;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=1.439;SOR=0.768 GT:AD:DP:GQ:PL 0/1:61,73:134:99:1906,0,1414 19 1122147 rs2072280 G A 1525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.84;ReadPosRankSum=1.414;SOR=0.668 GT:AD:DP:GQ:PL 0/1:77,78:155:99:1554,0,1681 19 1123652 rs4807570 G A 1190.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=0.366;SOR=0.82 GT:AD:DP:GQ:PL 0/1:43,51:94:99:1219,0,980 19 1124031 rs2024092 G A 1176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.95;ReadPosRankSum=0.261;SOR=0.679 GT:AD:DP:GQ:PL 0/1:93,55:148:99:1205,0,2316 19 1147431 rs5826725 TG T 66.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.439;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=6.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.85;ReadPosRankSum=0.549;SOR=1.242 GT:AD:DP:GQ:PL 0/1:29,7:38:99:104,0,684 19 1222012 rs2075607 G C 5061.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5090,510,0 19 1231142 rs8110590 T C 6964.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.049 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6993,659,0 19 1233597 rs3746102 G A 6977.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7006,695,0 19 1235878 rs79529846 C A 3993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.399;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.876;SOR=0.71 GT:AD:DP:GQ:PL 0/1:219,181:400:99:4022,0,5495 19 1272040 rs12488 T C 5209.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=1.199 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5238,501,0 19 1277275 rs757292 G C 3181.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3210,321,0 19 1299955 rs57847680 G A 2856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=1.038;SOR=0.768 GT:AD:DP:GQ:PL 0/1:124,129:253:99:2885,0,3009 19 1357082 rs713042 T C 2488.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.367 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2517,246,0 19 1360575 rs3826942 G A 7058.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.1;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7087,677,0 19 1370675 rs12608765 C G 3307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-1.67;SOR=0.768 GT:AD:DP:GQ:PL 0/1:125,128:253:99:3336,0,3220 19 1388538 rs1142530 C T 1329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=0.379;SOR=0.655 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1358,0,1994 19 1440068 rs201657403 G C 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.5;MQ=54.62;MQRankSum=-9.522;QD=3.5;ReadPosRankSum=-3.267;SOR=0.792 GT:AD:DP:GQ:PL 0/1:195,59:254:99:916,0,5006 19 1460794 . C T 2061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.85;ClippingRankSum=0;DP=171;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=1.112;SOR=0.815 GT:AD:DP:GQ:PL 0/1:85,86:171:99:2090,0,2149 19 1467684 rs265273 A C 11818.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.067;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.18;ReadPosRankSum=-0.089;SOR=0.248 GT:AD:DP:GQ:PL 1/1:1,404:405:99:11847,1204,0 19 1487083 rs4807119 C T 3536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-1.645;SOR=0.705 GT:AD:DP:GQ:PL 0/1:131,150:281:99:3565,0,3239 19 1495277 rs12459408 C T 1290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.885;SOR=0.468 GT:AD:DP:GQ:PL 0/1:49,54:103:99:1319,0,1203 19 1510661 rs265291 A G 6727.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6756,669,0 19 1529821 rs143475861 C T 1928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.335;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=-0.813;SOR=0.734 GT:AD:DP:GQ:PL 0/1:120,93:213:99:1957,0,2705 19 1622116 rs2240590 G A 3675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=5.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=1.704;SOR=1.008 GT:AD:DP:GQ:PL 0/1:170,153:323:99:3704,0,4460 19 1789556 rs12978609 C T 3081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=5.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.321;SOR=0.995 GT:AD:DP:GQ:PL 0/1:136,121:257:99:3110,0,3642 19 1796166 rs8100856 C T 2713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.218;SOR=0.803 GT:AD:DP:GQ:PL 0/1:125,117:242:99:2742,0,3079 19 1810605 rs716993 T C 3675.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.896 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3704,351,0 19 1811547 rs12609187 A G 7052.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.861 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7081,689,0 19 1811603 rs7250872 C T 6885.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=0.751 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6914,629,0 19 1819125 rs2396359 T C 4098.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.27;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4127,434,0 19 1821637 rs4807145 A G 6601.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.2;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6630,615,0 19 1825895 rs117819413 G A 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1;QD=11.67;ReadPosRankSum=0.764;SOR=0.762 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1242,0,1162 19 1825927 rs149465929 TCTC T 3449.73 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=43.12;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,80:80:99:3487,241,0 19 1827020 . TGGA T 300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.508;ClippingRankSum=0;DP=146;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.49;ReadPosRankSum=1.739;SOR=0.275 GT:AD:DP:GQ:PL 0/1:55,12:69:99:329,0,2258 19 1827565 rs10415018 A G 8586.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8615,815,0 19 1848243 rs12984809 A G 4789.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4818,450,0 19 1854557 rs3746045 A G 7055.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7084,687,0 19 1880950 rs4807160 T C 3745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.178;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-0.185;SOR=0.576 GT:AD:DP:GQ:PL 0/1:189,165:354:99:3774,0,4280 19 1881355 . T C 92.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.665;ClippingRankSum=0;DP=305;ExcessHet=3.0103;FS=34.744;MLEAC=1;MLEAF=0.5;MQ=47;MQRankSum=-8.055;QD=0.3;ReadPosRankSum=-2.63;SOR=3.092 GT:AD:DP:GQ:PGT:PID:PL 0/1:279,26:305:99:0|1:1881347_A_G:121,0,12532 19 1881395 rs199929215 T C 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DB;DP=361;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.5;MQ=47.2;MQRankSum=-8.121;QD=5.11;ReadPosRankSum=-2.654;SOR=0.909 GT:AD:DP:GQ:PGT:PID:PL 0/1:296,65:361:99:0|1:1881395_T_C:1874,0,13199 19 1881397 rs200867680 T G 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.326;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.5;MQ=47.37;MQRankSum=-8.127;QD=5.03;ReadPosRankSum=-2.439;SOR=0.819 GT:AD:DP:GQ:PGT:PID:PL 0/1:300,67:367:99:0|1:1881395_T_C:1874,0,13199 19 1881408 rs199712154 A G 858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.443;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.5;MQ=49.02;MQRankSum=-5.488;QD=2.12;ReadPosRankSum=-0.434;SOR=0.654 GT:AD:DP:GQ:PL 0/1:331,75:406:99:887,0,8867 19 1881526 . AG A 1043.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.984;ClippingRankSum=0;DP=285;ExcessHet=3.0103;FS=8.719;MLEAC=1;MLEAF=0.5;MQ=57.78;MQRankSum=-11.147;QD=3.71;ReadPosRankSum=-1.208;SOR=1.327 GT:AD:DP:GQ:PGT:PID:PL 0/1:238,43:281:99:0|1:1881526_AG_A:1081,0,10408 19 1881528 . AAG A 1042.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0;DP=283;ExcessHet=3.0103;FS=8.719;MLEAC=1;MLEAF=0.5;MQ=57.86;MQRankSum=-11.147;QD=3.71;ReadPosRankSum=-1.313;SOR=1.327 GT:AD:DP:GQ:PGT:PID:PL 0/1:238,43:281:99:0|1:1881526_AG_A:1080,0,10409 19 1912817 rs35870594 C T 4813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.904;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=0.373;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.036;SOR=0.661 GT:AD:DP:GQ:PL 0/1:180,196:376:99:4842,0,4639 19 1912934 rs12984675 T C 4396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.484;ClippingRankSum=0;DB;DP=393;ExcessHet=3.0103;FS=5.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=1.742;SOR=0.629 GT:AD:DP:GQ:PL 0/1:203,177:392:99:4425,0,4072 19 2037846 rs1064543 A C 2816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.081;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=13.061;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-1.175;QD=16.19;ReadPosRankSum=0.829;SOR=0.263 GT:AD:DP:GQ:PL 0/1:76,98:183:99:2845,0,2568 19 2041032 rs2287003 T C 5249.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.02;SOR=1.305 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5278,477,0 19 2042886 rs7253052 A G 3039.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.337 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3068,291,0 19 2050823 rs3746101 G T 1345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=-1.069;SOR=0.876 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1374,0,1965 19 2078409 rs2074893 A G 2395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.687;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=1.089;SOR=0.519 GT:AD:DP:GQ:PL 0/1:147,107:254:99:2424,0,3512 19 2078488 rs2074894 T C 2346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-1.134;SOR=0.476 GT:AD:DP:GQ:PL 0/1:109,103:212:99:2375,0,2588 19 2097416 rs116274260 G T 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.045;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.38;ReadPosRankSum=-1.44;SOR=0.468 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,36:71:99:0|1:2097416_G_T:1333,0,1802 19 2097417 rs115105239 A C 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.294;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.38;ReadPosRankSum=-1.137;SOR=0.468 GT:AD:DP:GQ:PGT:PID:PL 0/1:35,36:71:99:0|1:2097416_G_T:1333,0,1802 19 2129473 rs758287 T C 2505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=7.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.16;ReadPosRankSum=0.744;SOR=0.316 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,66:138:99:0|1:2129473_T_C:2534,0,3923 19 2129474 rs758288 C G 2505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.94;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=6.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.29;ReadPosRankSum=0.966;SOR=0.333 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,65:137:99:0|1:2129473_T_C:2534,0,3923 19 2138654 rs25672 T G 1409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-0.456;SOR=0.509 GT:AD:DP:GQ:PL 0/1:65,62:127:99:1438,0,1546 19 2216414 . C T 3852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0;DP=351;ExcessHet=3.0103;FS=4.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.19;SOR=0.815 GT:AD:DP:GQ:PL 0/1:188,162:350:99:3881,0,4941 19 2226676 rs3815308 G A 11994.8 PASS AC=2;AF=1;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,387:387:99:12023,1161,0 19 2226847 rs113842228 G T 6123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.657;ClippingRankSum=0;DB;DP=449;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=1.764;SOR=0.811 GT:AD:DP:GQ:PL 0/1:222,227:449:99:6152,0,5596 19 2248152 . T TGGAGTCCACCCTCCAGCCCCC 1082.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.104;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=21.505;MLEAC=1;MLEAF=0.5;MQ=61.4;MQRankSum=5.887;QD=15.47;ReadPosRankSum=0.932;SOR=3.686 GT:AD:DP:GQ:PL 0/1:51,19:70:99:1120,0,2320 19 2249477 rs10407022 G T 8137.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,263:265:99:8166,789,0 19 2251512 rs7252789 T A 8916.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8945,861,0 19 2251817 rs10417628 T C 9840.77 PASS AC=2;AF=1;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.69;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,301:301:99:9869,903,0 19 2252990 rs80043033 C G 1284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=4.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.11;ReadPosRankSum=0.302;SOR=0.352 GT:AD:DP:GQ:PL 0/1:31,54:85:99:1313,0,761 19 2339949 rs3746285 T C 10402.8 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.84;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,232:232:99:1|1:2339949_T_C:10431,704,0 19 2339958 rs1609752 T C 10668.8 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.72;SOR=0.726 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,244:244:99:1|1:2339949_T_C:10697,740,0 19 2340154 rs5826760 G GC 5449.73 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.39;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5487,463,0 19 2389872 rs891174 G C 2842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-1.229;SOR=0.799 GT:AD:DP:GQ:PL 0/1:134,123:257:99:2871,0,3277 19 2396556 rs7252886 C T 2485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=2.275;SOR=0.733 GT:AD:DP:GQ:PL 0/1:148,108:256:99:2514,0,4031 19 2396611 rs17685098 C T 2842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.737;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-2.272;SOR=0.79 GT:AD:DP:GQ:PL 0/1:171,133:304:99:2871,0,3751 19 2432415 . G A 934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.99;ReadPosRankSum=-0.272;SOR=0.771 GT:AD:DP:GQ:PL 0/1:58,46:104:99:963,0,1452 19 2433890 rs11084940 A G 7522.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.43;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7551,696,0 19 2732986 rs759073 T C 3738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.41;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-2.128;SOR=0.804 GT:AD:DP:GQ:PL 0/1:152,135:287:99:3767,0,3519 19 2762585 rs2302491 A C 2021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=2.68;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=-2.834;QD=11.96;ReadPosRankSum=-0.934;SOR=0.742 GT:AD:DP:GQ:PL 0/1:86,83:169:99:2050,0,2165 19 2767192 rs1128925 G T 1325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.146;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=0.152;SOR=0.81 GT:AD:DP:GQ:PL 0/1:66,57:123:99:1354,0,1592 19 2820105 rs2537856 G A 5977.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6006,621,0 19 2833802 rs867168 A G 2959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.299;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=0.785;SOR=0.752 GT:AD:DP:GQ:PL 0/1:101,121:222:99:2988,0,2403 19 2833864 rs867169 G A 3367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.117;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.15;ReadPosRankSum=1.141;SOR=0.69 GT:AD:DP:GQ:PL 0/1:105,133:238:99:3396,0,2511 19 2834808 rs8102063 T C 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.269;SOR=0.662 GT:AD:DP:GQ:PL 0/1:86,87:173:99:2195,0,2312 19 2853566 rs10412087 A G 5837.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.98;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5866,528,0 19 2877426 rs34849844 C T 2243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=0.098;SOR=0.835 GT:AD:DP:GQ:PL 0/1:116,94:210:99:2272,0,2950 19 2917186 rs2288959 T C 2774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.38;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=2.83;SOR=0.776 GT:AD:DP:GQ:PL 0/1:131,121:252:99:2803,0,3250 19 2917612 rs10410539 T C 3265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.266;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.61;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.884;QD=14.2;ReadPosRankSum=0.184;SOR=0.57 GT:AD:DP:GQ:PL 0/1:102,128:230:99:3294,0,2674 19 2933480 rs3786948 C T 5809.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.197 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5838,576,0 19 2934282 rs3746073 T C 7470.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7499,719,0 19 2936623 rs4807371 C T 3164.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3193,329,0 19 2993427 rs435806 T C 1959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.9;ReadPosRankSum=-1.636;SOR=0.605 GT:AD:DP:GQ:PL 0/1:110,88:198:99:1988,0,2543 19 2994107 rs34438430 C CT 4572.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=3.59;MLEAC=2;MLEAF=1;MQ=60.33;MQRankSum=0.225;QD=35.72;ReadPosRankSum=-1.341;SOR=0.667 GT:AD:DP:GQ:PL 1/1:1,127:128:99:4610,377,0 19 2994885 rs11084986 G T 2342.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2371,249,0 19 3053802 rs425485 T C 3181.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3210,306,0 19 3062857 rs11539938 T C 584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.969;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=1.933;SOR=0.693 GT:AD:DP:GQ:PL 0/1:34,25:59:99:613,0,816 19 3110349 rs11085000 T G 1138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.761;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.034;SOR=0.737 GT:AD:DP:GQ:PL 0/1:51,47:98:99:1167,0,1220 19 3119184 rs308046 T G 3367.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3396,309,0 19 3119239 rs4900 C T 1265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.04;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=0.047;SOR=0.597 GT:AD:DP:GQ:PL 0/1:56,53:109:99:1294,0,1410 19 3150238 rs310680 A G 5510.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5539,557,0 19 3162909 rs1637656 C T 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=-0.666;SOR=0.818 GT:AD:DP:GQ:PL 0/1:49,80:129:99:1879,0,1075 19 3452683 rs8105687 A G 8783.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8812,858,0 19 3543478 . GC G 447.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0;DP=100;ExcessHet=3.0103;FS=41.375;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.256;QD=5.89;ReadPosRankSum=0.116;SOR=0.129 GT:AD:DP:GQ:PL 0/1:50,26:83:99:485,0,1222 19 3595032 rs5758 C T 1192.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.08;SOR=2.368 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1221,105,0 19 3595076 rs34885751 T TA 53.06 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.712;ClippingRankSum=-0;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-0;QD=7.58;ReadPosRankSum=-0.712;SOR=0.18 GT:AD:DP:GQ:PL 0/1:2,5:7:11:90,0,11 19 3595794 rs4523 A G 11797.8 PASS AC=2;AF=1;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.71;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,372:372:99:11826,1115,0 19 3611972 rs2158935 G A 6892.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6921,697,0 19 3613346 rs2074789 G A 7922.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.44;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7951,755,0 19 3613596 rs57918402 A G 7061.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7090,689,0 19 3614403 rs7255692 T C 5778.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.026;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.74;ReadPosRankSum=-0.605;SOR=1.313 GT:AD:DP:GQ:PL 1/1:2,186:188:99:5807,514,0 19 3637395 rs10408855 T C 5445.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5474,516,0 19 3653525 rs2074957 C T 6324.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6353,653,0 19 3660944 rs3826944 G A 2339.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.89;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2368,243,0 19 3728495 rs58440297 CCT C 5443.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=2.833;QD=16.11;ReadPosRankSum=0.411;SOR=0.606 GT:AD:DP:GQ:PL 0/1:192,146:338:99:5481,0,7797 19 3730041 rs7258176 C T 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=1.385;SOR=0.83 GT:AD:DP:GQ:PL 0/1:71,69:140:99:1679,0,1790 19 3738649 rs599587 A C 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.774;SOR=0.661 GT:AD:DP:GQ:PL 0/1:64,83:147:99:1877,0,1445 19 3738971 rs600986 A G 2280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=-1.873;SOR=0.582 GT:AD:DP:GQ:PL 0/1:133,111:244:99:2309,0,3218 19 3740658 rs10416362 T G 3702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.602;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=13.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-0.419;SOR=1.324 GT:AD:DP:GQ:PL 0/1:146,136:282:99:3731,0,3385 19 3746087 rs501168 G A 942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.112;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.15;ReadPosRankSum=0.915;SOR=0.754 GT:AD:DP:GQ:PL 0/1:61,42:103:99:971,0,1474 19 3750615 rs1046268 T C 3277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.8;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=8.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.87;ReadPosRankSum=-0.819;SOR=1.245 GT:AD:DP:GQ:PGT:PID:PL 0/1:81,84:165:99:0|1:3750615_T_C:3306,0,3539 19 3750622 rs1046271 A C 3328.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.108;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=7.828;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.35;ReadPosRankSum=-0.387;SOR=1.255 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,87:172:99:0|1:3750615_T_C:3357,0,3577 19 3750690 rs1046278 A C 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.192;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=1.1;SOR=0.737 GT:AD:DP:GQ:PL 0/1:69,92:161:99:2185,0,1374 19 3752874 rs8102086 A G 3044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=0.29;SOR=0.724 GT:AD:DP:GQ:PL 0/1:125,129:254:99:3073,0,3039 19 3753769 rs3746120 C T 2691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.384;SOR=0.692 GT:AD:DP:GQ:PL 0/1:123,116:239:99:2720,0,2943 19 3762698 rs13960 C T 1920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.86;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=6.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=1.573;SOR=0.356 GT:AD:DP:GQ:PL 0/1:65,88:153:99:1949,0,1611 19 3767265 rs7239 C T 2043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.266;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=4.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.77;ReadPosRankSum=1.35;SOR=0.989 GT:AD:DP:GQ:PL 0/1:135,98:233:99:2072,0,3649 19 3820191 rs2301843 C T 4879.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.301 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4908,492,0 19 3820293 rs2301844 A G 6155.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6184,683,0 19 3820305 rs2301845 T G 5903.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.957 GT:AD:DP:GQ:PL 1/1:0,211:211:99:5932,632,0 19 3823237 rs2240231 G A 5873.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=1.337 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5902,587,0 19 3831449 rs2240232 G A 12238.8 PASS AC=2;AF=1;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,412:412:99:12267,1233,0 19 3831525 rs2240233 C A 9597.77 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=1.05 GT:AD:DP:GQ:PL 1/1:0,317:317:99:9626,949,0 19 3831765 rs2240235 G A 8594.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8623,872,0 19 3855426 rs8111014 G A 1321.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.885;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=1.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=1.255;SOR=0.865 GT:AD:DP:GQ:PL 0/1:66,58:124:99:1350,0,1518 19 3977413 rs202184545 G A 3245.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.086;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.367;SOR=0.719 GT:AD:DP:GQ:PL 0/1:180,132:312:99:3274,0,4780 19 3977486 rs36527 A G 11213.8 PASS AC=2;AF=1;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,359:359:99:11242,1078,0 19 3979408 rs36526 A G 4489.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4518,461,0 19 3980824 rs36525 A G 8445.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,272:272:99:8474,816,0 19 4024020 rs2028827 G A 1576.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=1.524 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1605,159,0 19 4028783 rs2289863 C T 5186.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.62;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5215,477,0 19 4033462 rs7255988 T C 5174.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5203,515,0 19 4099187 rs350911 T C 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=1.998;SOR=0.595 GT:AD:DP:GQ:PL 0/1:71,88:159:99:2097,0,1615 19 4101062 rs10250 G T 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.932;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.732;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-1.803;QD=9.58;ReadPosRankSum=1.172;SOR=0.57 GT:AD:DP:GQ:PL 0/1:132,81:213:99:2069,0,3276 19 4174950 rs350845 A G 7978.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,249:249:99:8007,747,0 19 4180836 rs352493 C T 7226.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7255,727,0 19 4217207 rs353693 T G 3313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.023;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.616;SOR=0.693 GT:AD:DP:GQ:PL 0/1:130,124:254:99:3342,0,3208 19 4234809 rs150368083 G A 3305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=4.945;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=1.598;SOR=0.486 GT:AD:DP:GQ:PL 0/1:187,148:335:99:3334,0,4816 19 4236996 rs4740 G A 7248.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,256:256:99:7277,766,0 19 4237067 rs4905 A G 7193.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,227:227:99:7222,681,0 19 4251069 rs1045750 T C 4147.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4176,414,0 19 4254375 rs11085068 C T 3158.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=1.38 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3187,320,0 19 4280186 rs10419363 C T 11228.8 PASS AC=2;AF=1;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,370:370:99:11257,1110,0 19 4288220 rs888929 C T 1375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.14;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=7.699;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=1.146;SOR=1.281 GT:AD:DP:GQ:PL 0/1:82,60:142:99:1404,0,2157 19 4288332 rs888930 A G 2534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.66;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=2.208;SOR=0.74 GT:AD:DP:GQ:PL 0/1:114,104:218:99:2563,0,2672 19 4292841 rs28477168 C G 2634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.651;QD=13.65;ReadPosRankSum=-0.852;SOR=0.562 GT:AD:DP:GQ:PL 0/1:91,102:193:99:2663,0,2440 19 4292898 rs55767880 C G 1699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.69;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=1.594;QD=13.71;ReadPosRankSum=0.924;SOR=0.805 GT:AD:DP:GQ:PL 0/1:56,68:124:99:1728,0,1358 19 4294551 rs62129297 T C 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.597;SOR=0.503 GT:AD:DP:GQ:PL 0/1:62,81:143:99:1903,0,2188 19 4304774 rs17523436 G A 109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.23;ReadPosRankSum=-0.602;SOR=1.162 GT:AD:DP:GQ:PL 0/1:12,9:21:99:138,0,321 19 4306311 rs4807578 T C 4547.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.23;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,167:167:99:4576,501,0 19 4318365 rs3745990 G A 2767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.569;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.002;SOR=0.691 GT:AD:DP:GQ:PL 0/1:112,114:226:99:2796,0,2650 19 4318854 rs45460791 C G 1590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.649;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=4.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=-0.271;SOR=1.162 GT:AD:DP:GQ:PL 0/1:50,63:113:99:1619,0,1052 19 4322990 rs67511110 G A 2817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.763;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.094;SOR=0.641 GT:AD:DP:GQ:PL 0/1:136,115:251:99:2846,0,3343 19 4324564 rs57455784 C T 1282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.51;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.167;SOR=0.633 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1311,0,1208 19 4325433 rs1138253 G A 2666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=-1.555;SOR=0.597 GT:AD:DP:GQ:PL 0/1:164,127:291:99:2695,0,3875 19 4333711 rs7247504 C T 5696.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5725,563,0 19 4352959 rs11882587 A G 7305.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.913 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7334,747,0 19 4355035 rs2041772 A G 3346.77 SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=5.192 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3375,339,0 19 4357555 rs4807583 A G 6593.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6622,623,0 19 4362691 rs243261 G C 2635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.569;SOR=0.833 GT:AD:DP:GQ:PL 0/1:130,113:243:99:2664,0,3363 19 4400314 rs62129356 C T 1323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.283;SOR=0.565 GT:AD:DP:GQ:PL 0/1:68,63:131:99:1352,0,1746 19 4409756 rs2230636 A G 3129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.37;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-2.134;SOR=0.547 GT:AD:DP:GQ:PL 0/1:113,136:249:99:3158,0,2626 19 4442336 rs9352 C T 3657.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.3;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3686,400,0 19 4442999 rs243383 T G 3744.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.59;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3773,392,0 19 4452497 rs243395 G A 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.37;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.48;ReadPosRankSum=0.13;SOR=0.742 GT:AD:DP:GQ:PL 0/1:148,109:257:99:2464,0,3462 19 4454083 rs1127888 C T 1798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.9;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=5.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.373;SOR=1.168 GT:AD:DP:GQ:PL 0/1:112,71:183:99:1827,0,3116 19 4457650 rs1044510 C T 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.064;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.041;SOR=0.82 GT:AD:DP:GQ:PL 0/1:85,75:160:99:1869,0,2057 19 4475362 rs2288932 T G 2534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.947;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=5.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.85;ReadPosRankSum=1.642;SOR=0.73 GT:AD:DP:GQ:PL 0/1:81,102:183:99:2563,0,1827 19 4493708 rs892161 A G 2157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.397;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=2.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=0.047;SOR=0.575 GT:AD:DP:GQ:PL 0/1:115,93:208:99:2186,0,2807 19 4499632 rs72100503 AAGCTGGCCGGGGAGG A 5205.73 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.61;QD=44.12;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,118:118:99:5243,362,0 19 4508945 rs8105775 A G 6722.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6751,684,0 19 4510560 rs7251858 C T 3871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.991;ClippingRankSum=0;DB;DP=389;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-0.077;SOR=0.631 GT:AD:DP:GQ:PL 0/1:205,181:386:99:3900,0,5040 19 4510723 rs78776990 G A 3829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.292;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.243;SOR=0.745 GT:AD:DP:GQ:PL 0/1:177,159:336:99:3858,0,4181 19 4511140 rs7255715 C G 10880.8 PASS AC=2;AF=1;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,353:353:99:10909,1058,0 19 4511278 rs10422078 C T 11202.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.408;ClippingRankSum=0;DB;DP=501;ExcessHet=3.0103;FS=4.108;MLEAC=1;MLEAF=0.5;MQ=55.57;MQRankSum=4.128;QD=22.36;ReadPosRankSum=4.284;SOR=0.466 GT:AD:DP:GQ:PGT:PID:PL 0/1:215,286:501:99:0|1:4511278_C_T:11231,0,8293 19 4511281 rs7254934 G A 5071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.517;ClippingRankSum=0;DB;DP=501;ExcessHet=3.0103;FS=3.254;MLEAC=1;MLEAF=0.5;MQ=55.57;MQRankSum=-3.823;QD=10.12;ReadPosRankSum=-4.121;SOR=0.961 GT:AD:DP:GQ:PL 0/1:281,220:501:99:5100,0,11199 19 4511283 rs80238130 C T 11051.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=4.078;MLEAC=1;MLEAF=0.5;MQ=55.59;MQRankSum=3.634;QD=21.97;ReadPosRankSum=4.09;SOR=0.487 GT:AD:DP:GQ:PGT:PID:PL 0/1:224,279:503:99:0|1:4511278_C_T:11080,0,8592 19 4511284 rs10422854 A G 10989.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.58;ClippingRankSum=0;DB;DP=502;ExcessHet=3.0103;FS=3.24;MLEAC=1;MLEAF=0.5;MQ=55.58;MQRankSum=3.549;QD=21.89;ReadPosRankSum=4.158;SOR=0.482 GT:AD:DP:GQ:PGT:PID:PL 0/1:225,277:502:99:0|1:4511278_C_T:11018,0,8598 19 4511350 rs7259721 T A 13946.8 PASS AC=2;AF=1;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.85;QD=30.25;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,461:461:99:13975,1382,0 19 4511453 rs7255187 G A 10186.8 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,341:341:99:10215,1021,0 19 4511525 rs7256712 A G 13381.8 PASS AC=2;AF=1;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.25;QD=30.62;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,437:437:99:13410,1305,0 19 4511575 rs62115185 C G 4975.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.841;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.5;MQ=59.16;MQRankSum=-1.672;QD=13.45;ReadPosRankSum=-6.004;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 0/1:233,137:370:99:0|1:4511575_C_G:5004,0,9413 19 4511578 rs62115186 A G 4937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.5;MQ=59.15;MQRankSum=-1.769;QD=13.45;ReadPosRankSum=-6.969;SOR=0.811 GT:AD:DP:GQ:PGT:PID:PL 0/1:234,133:367:99:0|1:4511575_C_G:4966,0,9500 19 4511580 rs78884463 C T 4815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.263;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.5;MQ=59.14;MQRankSum=-1.913;QD=13.3;ReadPosRankSum=-7.199;SOR=0.809 GT:AD:DP:GQ:PGT:PID:PL 0/1:235,127:362:99:0|1:4511575_C_G:4844,0,9929 19 4511581 rs75029810 A G 4758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.707;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=59.07;MQRankSum=-1.639;QD=12.93;ReadPosRankSum=-7.079;SOR=0.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:241,127:368:99:0|1:4511575_C_G:4787,0,10142 19 4511598 rs76022477 A G 2745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.504;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.5;MQ=58.3;MQRankSum=-1.235;QD=7.87;ReadPosRankSum=-6.069;SOR=0.832 GT:AD:DP:GQ:PGT:PID:PL 0/1:276,73:349:99:0|1:4511575_C_G:2774,0,11414 19 4511599 rs78467378 C G 2409.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.961;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.5;MQ=58.25;MQRankSum=-1.296;QD=6.96;ReadPosRankSum=-6.091;SOR=0.772 GT:AD:DP:GQ:PGT:PID:PL 0/1:276,70:346:99:0|1:4511575_C_G:2438,0,11438 19 4511619 rs77044499 T C 730.77 SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.574;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=4.466;MLEAC=1;MLEAF=0.5;MQ=57.23;MQRankSum=-2.545;QD=2.49;ReadPosRankSum=-10.156;SOR=1.093 GT:AD:DP:GQ:PGT:PID:PL 0/1:260,33:293:99:0|1:4511575_C_G:759,0,10974 19 4511620 . G A 649.77 SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.587;ClippingRankSum=0;DP=291;ExcessHet=3.0103;FS=4.66;MLEAC=1;MLEAF=0.5;MQ=57.1;MQRankSum=-2.342;QD=2.23;ReadPosRankSum=-10.124;SOR=1.138 GT:AD:DP:GQ:PGT:PID:PL 0/1:260,31:291:99:0|1:4511575_C_G:678,0,10918 19 4511622 rs62115187 C T 487.77 SNP_QD_filter;SNP_ReadPosRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.246;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.5;MQ=57.07;MQRankSum=-2.286;QD=1.71;ReadPosRankSum=-10.293;SOR=0.879 GT:AD:DP:GQ:PGT:PID:PL 0/1:259,27:286:99:0|1:4511575_C_G:516,0,10846 19 4511647 rs7256387 C G 7325.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.419;ClippingRankSum=0;DB;DP=494;ExcessHet=3.0103;FS=12.846;MLEAC=2;MLEAF=1;MQ=57;MQRankSum=-4.86;QD=19.48;ReadPosRankSum=16.383;SOR=0.383 GT:AD:DP:GQ:PL 1/1:134,242:376:99:7354,319,0 19 4511674 . C T 3783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0;DP=515;ExcessHet=3.0103;FS=15.53;MLEAC=1;MLEAF=0.5;MQ=56.47;MQRankSum=-5.876;QD=9.53;ReadPosRankSum=1.975;SOR=0.614 GT:AD:DP:GQ:PGT:PID:PL 0/1:295,102:397:99:0|1:4511674_C_T:3812,0,6690 19 4511677 rs28546567 A G 4013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0;DB;DP=515;ExcessHet=3.0103;FS=16.275;MLEAC=1;MLEAF=0.5;MQ=56.47;MQRankSum=-5.062;QD=10.11;ReadPosRankSum=2.238;SOR=0.477 GT:AD:DP:GQ:PGT:PID:PL 0/1:286,111:397:99:0|1:4511674_C_T:4042,0,6490 19 4511679 rs200355083 C T 4119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0;DB;DP=516;ExcessHet=3.0103;FS=18.634;MLEAC=1;MLEAF=0.5;MQ=56.47;MQRankSum=-4.826;QD=10.35;ReadPosRankSum=2.709;SOR=0.557 GT:AD:DP:GQ:PGT:PID:PL 0/1:284,114:398:99:0|1:4511674_C_T:4148,0,6432 19 4511680 . A G 4125.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.718;ClippingRankSum=0;DP=518;ExcessHet=3.0103;FS=18.382;MLEAC=1;MLEAF=0.5;MQ=56.49;MQRankSum=-4.617;QD=10.31;ReadPosRankSum=2.725;SOR=0.522 GT:AD:DP:GQ:PGT:PID:PL 0/1:283,117:400:99:0|1:4511674_C_T:4154,0,6348 19 4511725 rs73920825 T C 13391.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.381;ClippingRankSum=0;DB;DP=577;ExcessHet=3.0103;FS=2.73;MLEAC=2;MLEAF=1;MQ=56.86;MQRankSum=-4.985;QD=29.11;ReadPosRankSum=16.037;SOR=0.505 GT:AD:DP:GQ:PGT:PID:PL 1/1:134,326:460:99:1|1:4511725_T_C:13420,596,0 19 4511730 rs62115190 T C 9397.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0;DB;DP=578;ExcessHet=3.0103;FS=1.962;MLEAC=2;MLEAF=1;MQ=56.86;MQRankSum=-5.068;QD=20.39;ReadPosRankSum=16.195;SOR=0.516 GT:AD:DP:GQ:PL 1/1:136,325:461:99:9426,523,0 19 4511737 rs57610751 T C 13585.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.496;ClippingRankSum=0;DB;DP=600;ExcessHet=3.0103;FS=1.995;MLEAC=2;MLEAF=1;MQ=57.13;MQRankSum=-3.947;QD=28.13;ReadPosRankSum=16.802;SOR=0.514 GT:AD:DP:GQ:PGT:PID:PL 1/1:136,347:483:99:1|1:4511725_T_C:13614,587,0 19 4511830 rs7257142 A G 4672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0;DB;DP=530;ExcessHet=3.0103;FS=1.79;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=0.75;QD=8.83;ReadPosRankSum=-0.992;SOR=0.764 GT:AD:DP:GQ:PL 0/1:326,203:529:99:4701,0,10403 19 4511908 rs10423606 C T 7577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.128;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.553;QD=18.66;ReadPosRankSum=2.544;SOR=0.673 GT:AD:DP:GQ:PGT:PID:PL 0/1:201,205:406:99:0|1:4511908_C_T:7606,0,8375 19 4511927 rs10422025 G A 8009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.417;QD=21.59;ReadPosRankSum=-0.727;SOR=0.636 GT:AD:DP:GQ:PGT:PID:PL 0/1:169,202:371:99:0|1:4511908_C_T:8038,0,7533 19 4511929 rs10424401 A G 8089.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.41;QD=22.1;ReadPosRankSum=-0.987;SOR=0.647 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,200:366:99:0|1:4511908_C_T:8118,0,7191 19 4511955 rs7260518 T C 6419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.4;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0.068;QD=18.83;ReadPosRankSum=0.935;SOR=0.85 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,175:341:99:0|1:4511908_C_T:6448,0,6160 19 4512514 rs7259625 G C 6230.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0;DB;DP=529;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-2.926;QD=11.82;ReadPosRankSum=0.07;SOR=0.73 GT:AD:DP:GQ:PL 0/1:255,272:527:99:6259,0,5832 19 4512669 rs55901236 T C 4079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.31;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-0.038;SOR=0.618 GT:AD:DP:GQ:PL 0/1:146,160:306:99:4108,0,3578 19 4512748 rs112063407 T C 4116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=1.12;SOR=0.781 GT:AD:DP:GQ:PL 0/1:171,168:339:99:4145,0,4338 19 4512806 rs367547488 A T 4698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=-0.141;SOR=0.575 GT:AD:DP:GQ:PL 0/1:162,182:344:99:4727,0,4226 19 4513143 rs4807595 C T 8917.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.285;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.415;MLEAC=2;MLEAF=1;MQ=57.11;MQRankSum=0.644;QD=41.48;ReadPosRankSum=0.254;SOR=0.386 GT:AD:DP:GQ:PGT:PID:PL 1/1:8,207:215:99:1|1:4513143_C_T:8946,232,0 19 4513144 rs4807596 A G 8917.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.033;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=3.036;MLEAC=2;MLEAF=1;MQ=57.25;MQRankSum=0.716;QD=39.46;ReadPosRankSum=-0.068;SOR=0.419 GT:AD:DP:GQ:PGT:PID:PL 1/1:8,218:226:99:1|1:4513143_C_T:8946,232,0 19 4513559 rs4807597 A G 8780.77 PASS AC=2;AF=1;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,283:283:99:8809,849,0 19 4525046 rs1610090 A G 6154.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6183,585,0 19 4538599 rs966384 G A 7905.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.25;SOR=0.783 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7934,758,0 19 4558431 rs2304213 C G 1940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=12.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.335;SOR=1.457 GT:AD:DP:GQ:PL 0/1:106,89:195:99:1969,0,2708 19 4659924 rs72620522 C T 904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.765;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.14;ReadPosRankSum=1.173;SOR=0.622 GT:AD:DP:GQ:PL 0/1:58,41:99:99:933,0,1381 19 4670236 rs10401515 C G 4007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.988;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.932;SOR=0.79 GT:AD:DP:GQ:PL 0/1:179,173:352:99:4036,0,4068 19 4670313 rs2270090 C G 3617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.219;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.636;SOR=0.868 GT:AD:DP:GQ:PL 0/1:164,151:315:99:3646,0,3954 19 4818378 rs7255265 T C 2764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-2.099;SOR=0.728 GT:AD:DP:GQ:PL 0/1:102,114:216:99:2793,0,2474 19 4844665 rs36066928 TC T 5553.73 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.28;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5591,488,0 19 4847713 rs9973235 A G 3790.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.85;SOR=1.428 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3819,336,0 19 4847874 rs9304915 A G 1747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.087;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=1.369;SOR=0.619 GT:AD:DP:GQ:PL 0/1:65,67:132:99:1776,0,1524 19 4852106 rs2271058 A G 6772.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6801,626,0 19 4859937 rs8289 T C 5198.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5227,525,0 19 4902754 rs2779168 G A 2148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.02;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.969;SOR=0.679 GT:AD:DP:GQ:PL 0/1:102,93:195:99:2177,0,2553 19 4910889 rs2261988 G T 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.925;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=6.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-1.487;SOR=1.123 GT:AD:DP:GQ:PL 0/1:97,90:187:99:2327,0,2335 19 4910924 rs2261986 C T 2309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.138;SOR=0.88 GT:AD:DP:GQ:PL 0/1:114,102:216:99:2338,0,2743 19 4930838 rs2307205 G A 3179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=3.755;SOR=0.634 GT:AD:DP:GQ:PL 0/1:149,140:289:99:3208,0,3571 19 4945974 rs2250978 T C 1983.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.19;SOR=3.428 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2012,232,0 19 4950770 rs2307213 C T 3912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.05;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.5;MQ=59.32;MQRankSum=1.948;QD=12.27;ReadPosRankSum=1.089;SOR=0.814 GT:AD:DP:GQ:PL 0/1:160,159:319:99:3941,0,3919 19 4954644 rs2307207 C T 2696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.49;MQRankSum=-1.523;QD=13.48;ReadPosRankSum=-0.241;SOR=0.725 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2725,0,2497 19 4954679 rs55946225 G GC 7760.73 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.55;QD=37.13;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,209:209:99:7798,629,0 19 5041178 rs2240678 T C 2078.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2107,207,0 19 5047691 rs2620818 G A 2138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.489;SOR=0.877 GT:AD:DP:GQ:PL 0/1:71,93:164:99:2167,0,1724 19 5110794 rs2613739 A G 5934.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,201:201:99:5963,603,0 19 5135392 rs2620836 A G 4220.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=1.628 GT:AD:DP:GQ:PL 1/1:0,131:131:99:4249,393,0 19 5137298 rs17179181 G A 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.08;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=1.111;SOR=1.023 GT:AD:DP:GQ:PL 0/1:84,58:142:99:1275,0,2146 19 5144411 rs57489512 T TGAGAGCATCACGGTGAGCTGTGGGGTGGGGCAGGGGGCGGGGGGAGGCTGGGAGCACAGCGACAACCTGTACCCC 779.73 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.72;QD=28.88;SOR=2.753 GT:AD:DP:GQ:PL 1/1:0,27:27:35:817,35,0 19 5206775 rs1143700 A G 3928.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3957,410,0 19 5208236 rs55727125 G A 1949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.914;SOR=0.646 GT:AD:DP:GQ:PL 0/1:110,83:193:99:1978,0,2787 19 5210622 rs2302224 G A 3700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.445;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=0.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10;ReadPosRankSum=0.419;SOR=0.747 GT:AD:DP:GQ:PL 0/1:211,159:370:99:3729,0,5222 19 5212380 rs1064300 C T 3360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.959;SOR=0.704 GT:AD:DP:GQ:PL 0/1:141,144:285:99:3389,0,3578 19 5212482 rs2230611 G A 2799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.85;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-1.07;SOR=0.797 GT:AD:DP:GQ:PL 0/1:127,125:252:99:2828,0,3030 19 5214697 rs4807697 A G 7886.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=1.093 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7915,738,0 19 5265222 rs4807703 G A 1728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=1.109;SOR=0.885 GT:AD:DP:GQ:PL 0/1:87,73:160:99:1757,0,2265 19 5273571 rs1141371 T G 2814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.81;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.784;SOR=0.751 GT:AD:DP:GQ:PL 0/1:102,124:226:99:2843,0,2388 19 5455611 rs2240743 C T 10053.8 PASS AC=2;AF=1;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.975 GT:AD:DP:GQ:PL 1/1:0,343:343:99:10082,1028,0 19 5455796 rs420325 A G 12029.8 PASS AC=2;AF=1;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,405:405:99:12058,1213,0 19 5455971 rs8103406 G T 14730.8 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=47.37;SOR=0.766 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,311:311:99:1|1:5455971_G_T:14759,999,0 19 5455976 rs61740902 C T 14920.8 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.91;SOR=0.724 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,325:325:99:1|1:5455971_G_T:14949,1008,0 19 5455978 rs8107825 T C 14745.8 PASS AC=2;AF=1;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.37;SOR=0.75 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,325:325:99:1|1:5455971_G_T:14774,993,0 19 5456450 rs8111108 T C 10758.8 PASS AC=2;AF=1;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,356:356:99:10787,1066,0 19 5595354 rs10413286 T C 2681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.067;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-1.435;SOR=0.945 GT:AD:DP:GQ:PL 0/1:104,111:215:99:2710,0,2525 19 5684775 rs35832694 G A 2329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=0.395;SOR=0.627 GT:AD:DP:GQ:PL 0/1:79,96:175:99:2358,0,1861 19 5696245 rs4073993 A G 2684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.45;SOR=0.751 GT:AD:DP:GQ:PL 0/1:152,119:271:99:2713,0,3900 19 5831724 rs112313064 T C 3422.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.882;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.5;MQ=37.98;MQRankSum=1.606;QD=13.86;ReadPosRankSum=1.398;SOR=0.64 GT:AD:DP:GQ:PL 0/1:139,108:247:99:3451,0,4209 19 5832209 rs778805 G A 3111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.332;SOR=0.751 GT:AD:DP:GQ:PL 0/1:133,123:256:99:3140,0,3592 19 5844537 rs778986 A G 3968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.3;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=0.23;SOR=0.662 GT:AD:DP:GQ:PL 0/1:132,160:292:99:3997,0,3162 19 5844649 rs812936 G A 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.901;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.964;SOR=0.532 GT:AD:DP:GQ:PL 0/1:83,72:155:99:1796,0,2001 19 5866654 rs778983 A G 8857.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.8;QD=30.86;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,287:287:99:8886,863,0 19 5866724 rs4807054 G A 2485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.789;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=42.19;MQRankSum=-0.619;QD=12.01;ReadPosRankSum=-0.71;SOR=0.761 GT:AD:DP:GQ:PL 0/1:104,103:207:99:2514,0,2765 19 5866736 rs57100281 T C 6868.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.15;QD=39.48;SOR=1.809 GT:AD:DP:GQ:PL 1/1:0,174:174:99:6897,529,0 19 5866816 rs28541500 G A 3516.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.48;QD=33.18;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3545,317,0 19 5866840 rs702065 T C 1529.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.932;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.595;MLEAC=1;MLEAF=0.5;MQ=34.77;MQRankSum=0.779;QD=11.86;ReadPosRankSum=0.023;SOR=0.466 GT:AD:DP:GQ:PL 0/1:76,53:129:99:1558,0,2189 19 5867177 rs778970 G A 5565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.645;ClippingRankSum=0;DB;DP=411;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=50.32;MQRankSum=0.618;QD=13.54;ReadPosRankSum=0.585;SOR=0.58 GT:AD:DP:GQ:PL 0/1:188,223:411:99:5594,0,4458 19 5867191 rs10412834 G A 4209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0;DB;DP=411;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=51.53;MQRankSum=-0.825;QD=10.24;ReadPosRankSum=-0.37;SOR=0.758 GT:AD:DP:GQ:PL 0/1:226,185:411:99:4238,0,5681 19 5867748 rs778971 G T 6120.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6149,582,0 19 5892954 rs1678868 T C 2657.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.473;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=0;QD=13.7;ReadPosRankSum=-1.73;SOR=0.56 GT:AD:DP:GQ:PL 0/1:93,101:194:99:2686,0,2314 19 5908969 rs10404195 G A 3327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.566;SOR=0.583 GT:AD:DP:GQ:PL 0/1:125,140:265:99:3356,0,3058 19 5994823 rs71942694 CGAG C 1577.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.83;MLEAC=1;MLEAF=0.5;MQ=60.52;MQRankSum=1.978;QD=19.01;ReadPosRankSum=-0.32;SOR=0.818 GT:AD:DP:GQ:PL 0/1:40,43:83:99:1615,0,1880 19 6151703 rs7252466 C T 1872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.1;ReadPosRankSum=1.6;SOR=0.983 GT:AD:DP:GQ:PL 0/1:47,77:124:99:1901,0,1049 19 6156483 rs4807840 T C 1485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.187;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=-2.504;SOR=0.676 GT:AD:DP:GQ:PL 0/1:86,69:155:99:1514,0,1951 19 6222353 rs11880101 C T 1676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.892;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=-0.98;SOR=0.489 GT:AD:DP:GQ:PL 0/1:48,60:108:99:1705,0,1457 19 6415443 rs1616305 T C 8386.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8415,830,0 19 6417855 rs2258496 G A 1381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=-0.009;SOR=0.647 GT:AD:DP:GQ:PL 0/1:49,55:104:99:1410,0,1293 19 6419275 rs2305059 A G 1437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.89;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=6.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.482;SOR=1.208 GT:AD:DP:GQ:PL 0/1:69,62:131:99:1466,0,1488 19 6452305 rs173229 A G 3519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.256;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.15;ReadPosRankSum=-0.74;SOR=0.571 GT:AD:DP:GQ:PL 0/1:85,133:218:99:3548,0,2031 19 6458351 rs150694715 G A 1561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.349;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=1.273;SOR=0.551 GT:AD:DP:GQ:PL 0/1:90,68:158:99:1590,0,2108 19 6466482 rs348362 A G 1034.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.965;SOR=0.374 GT:AD:DP:GQ:PL 0/1:46,43:89:99:1063,0,1242 19 6466638 rs140748113 A G 3021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.628;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.692;SOR=0.913 GT:AD:DP:GQ:PL 0/1:128,126:254:99:3050,0,2993 19 6468331 rs62107586 T C 2713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.83;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.382;SOR=0.603 GT:AD:DP:GQ:PL 0/1:136,123:259:99:2742,0,3407 19 6475613 rs3745571 T C 6959.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.14;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6988,630,0 19 6477256 rs348398 G T 7245.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7274,709,0 19 6495736 rs2071347 A G 6950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.251;ClippingRankSum=0;DB;DP=580;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.7;QD=12.03;ReadPosRankSum=-0.412;SOR=0.643 GT:AD:DP:GQ:PL 0/1:310,268:580:99:6979,0,7631 19 6665020 rs344560 T C 8619.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.67;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,256:256:99:8648,768,0 19 6669934 rs2291668 G A 3494.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.458;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=4.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=0.053;SOR=0.464 GT:AD:DP:GQ:PL 0/1:135,131:266:99:3523,0,3553 19 6677989 rs17030 G A 2720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.325;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=0.105;SOR=0.816 GT:AD:DP:GQ:PL 0/1:95,106:201:99:2749,0,2429 19 6679511 rs2277984 C T 466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.441;SOR=0.917 GT:AD:DP:GQ:PL 0/1:28,22:50:99:495,0,622 19 6696496 rs2287847 T C 1058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.108;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=-0.449;SOR=0.527 GT:AD:DP:GQ:PL 0/1:40,38:78:99:1087,0,1112 19 6696597 rs2287845 G A 1673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=1.578;SOR=0.666 GT:AD:DP:GQ:PL 0/1:98,79:177:99:1702,0,2257 19 6697406 rs423490 A G 1545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=0.974;SOR=0.735 GT:AD:DP:GQ:PL 0/1:68,65:133:99:1574,0,1769 19 6702157 rs428453 C G 641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-0.791;SOR=0.643 GT:AD:DP:GQ:PL 0/1:34,33:67:99:670,0,823 19 6702598 rs406514 G A 509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.398;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=2.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-0.885;SOR=1.154 GT:AD:DP:GQ:PL 0/1:31,22:53:99:538,0,668 19 6709848 rs2230204 C T 1869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=3.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-1.714;SOR=0.457 GT:AD:DP:GQ:PL 0/1:84,83:167:99:1898,0,2176 19 6731057 rs2279624 T C 2238.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-1.624;SOR=0.689 GT:AD:DP:GQ:PL 0/1:117,98:215:99:2267,0,3045 19 6732018 rs2291666 C T 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.032;SOR=0.668 GT:AD:DP:GQ:PL 0/1:112,120:232:99:2869,0,2658 19 6737481 rs340138 T C 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.301;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.943;SOR=0.608 GT:AD:DP:GQ:PL 0/1:113,105:218:99:2426,0,2953 19 6737509 rs339401 G A 2237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.939;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.244;SOR=0.746 GT:AD:DP:GQ:PL 0/1:117,101:218:99:2266,0,3273 19 6746076 rs144735071 G A 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.169;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.332;SOR=0.582 GT:AD:DP:GQ:PL 0/1:48,47:95:99:1108,0,1042 19 6913707 rs466876 C T 2075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.014;SOR=0.718 GT:AD:DP:GQ:PL 0/1:93,92:185:99:2104,0,2237 19 6913811 rs457857 A G 5905.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,198:198:99:5934,594,0 19 6919624 rs373533 A C 5450.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5479,581,0 19 6919753 rs461645 A G 3691.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=1.51 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3720,348,0 19 6921713 rs34941944 G GT 1297.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=-0.165;SOR=0.448 GT:AD:DP:GQ:PL 0/1:85,62:149:99:1335,0,1752 19 6924672 rs2290634 A G 904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=1.697;SOR=0.326 GT:AD:DP:GQ:PL 0/1:39,36:75:99:933,0,1069 19 6926378 rs2228539 T C 2904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.442;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.24;ReadPosRankSum=1.393;SOR=0.717 GT:AD:DP:GQ:PGT:PID:PL 0/1:71,80:151:99:0|1:6926355_T_C:2933,0,3203 19 6935033 rs11666741 C A 1348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=4.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=0.565;SOR=1.057 GT:AD:DP:GQ:PL 0/1:48,61:109:99:1377,0,1032 19 7293898 rs7508518 G C 6069.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,191:191:99:6098,572,0 19 7504982 rs10422503 C T 4879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0;DB;DP=427;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.072;SOR=0.62 GT:AD:DP:GQ:PL 0/1:209,215:424:99:4908,0,5005 19 7506668 rs2287909 T G 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.714;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=2.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=-0.315;SOR=0.465 GT:AD:DP:GQ:PL 0/1:67,40:107:99:1022,0,1753 19 7528734 rs2287918 A G 3902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=0.942;SOR=0.63 GT:AD:DP:GQ:PL 0/1:130,161:291:99:3931,0,3157 19 7533767 rs10405143 T G 3931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.762;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=1.065;SOR=0.596 GT:AD:DP:GQ:PL 0/1:150,162:312:99:3960,0,3400 19 7533850 rs9329368 A G 4536.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.051;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-1.292;SOR=0.653 GT:AD:DP:GQ:PL 0/1:176,172:348:99:4565,0,3947 19 7570978 rs685034 T C 7916.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=0.88 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7945,762,0 19 7584223 rs11555037 A G 7148.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,218:218:99:7177,654,0 19 7593589 rs612862 C T 7750.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7779,758,0 19 7606908 rs17854645 G C 1701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=0.595;SOR=0.654 GT:AD:DP:GQ:PL 0/1:98,82:180:99:1730,0,2332 19 7607441 rs574930 C T 3413.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.428 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3442,336,0 19 7607564 rs620744 T C 4424.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4453,438,0 19 7615903 rs8107538 G A 1264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.65;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=0.845;SOR=0.885 GT:AD:DP:GQ:PL 0/1:81,58:139:99:1293,0,1932 19 7619760 rs539887 A C 1844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.229;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.41;ReadPosRankSum=-1.316;SOR=0.745 GT:AD:DP:GQ:PL 0/1:55,73:128:99:1873,0,1227 19 7620116 rs563826 A G 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.423;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.198;SOR=0.941 GT:AD:DP:GQ:PL 0/1:44,34:78:99:1022,0,1213 19 7621475 rs45505598 T G 911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.581;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-1.545;SOR=0.85 GT:AD:DP:GQ:PL 0/1:44,41:85:99:940,0,990 19 7626013 rs11307097 AC A 1889.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.825;QD=15.88;ReadPosRankSum=1.784;SOR=0.902 GT:AD:DP:GQ:PL 0/1:47,72:119:99:1927,0,1102 19 7675369 rs62113420 C T 3711.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.016 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3740,376,0 19 7688039 rs4134846 C T 5103.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5132,497,0 19 7688614 rs2335521 T C 7508.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.16;SOR=1.232 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7537,723,0 19 7694393 rs4134809 G A 4553.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4582,468,0 19 7698320 rs1862514 C T 5480.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.4;QD=29.31;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5509,559,0 19 7703605 rs8104339 C T 3791.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3820,398,0 19 7710210 rs889187 A G 5253.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5282,525,0 19 7711221 rs10001 T C 5685.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5714,582,0 19 7712277 rs6791 A G 10873.8 PASS AC=2;AF=1;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,351:351:99:10902,1053,0 19 7735089 rs10402265 G C 2548.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.98;SOR=1.402 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2577,224,0 19 7743821 rs72996468 A G 797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.598;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.313;SOR=0.431 GT:AD:DP:GQ:PL 0/1:39,31:70:99:826,0,1132 19 7743879 rs4804766 C T 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=-0.889;SOR=0.681 GT:AD:DP:GQ:PL 0/1:68,48:116:99:1190,0,1811 19 7747129 rs80109157 G C 2073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.338;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=8.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.791;SOR=1.255 GT:AD:DP:GQ:PL 0/1:105,77:182:99:2102,0,2801 19 7747293 rs6952 T G 4860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.267;ClippingRankSum=0;DB;DP=376;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.557;SOR=0.603 GT:AD:DP:GQ:PL 0/1:188,187:375:99:4889,0,4683 19 7761812 rs2277989 A G 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=2.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.31;ReadPosRankSum=-1.853;SOR=0.418 GT:AD:DP:GQ:PL 0/1:38,53:91:99:1330,0,919 19 7763703 rs2287866 A G 2122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.198;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.36;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.16;ReadPosRankSum=-1.041;SOR=0.872 GT:AD:DP:GQ:PL 0/1:60,80:140:99:2151,0,1463 19 7913974 rs555609 T C 7191.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7220,726,0 19 7916475 rs2452012 T C 9718.77 PASS AC=2;AF=1;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,320:320:99:9747,960,0 19 7916620 rs580790 A G 6888.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6917,677,0 19 7928462 rs10410459 T C 11006.8 PASS AC=2;AF=1;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,344:344:99:11035,1031,0 19 7936208 rs525420 A G 7300.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7329,701,0 19 7938306 rs58971992 A AG 8217.73 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=35.12;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,234:234:99:8255,704,0 19 7963914 rs524029 A C 8195.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.39;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8224,759,0 19 7964616 rs45603833 G C 8171.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8200,789,0 19 7976116 rs10412007 T C 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.572;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.48;ReadPosRankSum=-0.146;SOR=0.745 GT:AD:DP:GQ:PL 0/1:64,68:132:99:1940,0,2405 19 7990155 rs150061390 G C 4299.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4328,407,0 19 7998386 rs118048213 G C 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.121;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=1.391;SOR=0.912 GT:AD:DP:GQ:PL 0/1:51,43:94:99:1076,0,1257 19 8000045 rs35989631 C T 1963.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1992,201,0 19 8028544 rs14394 A G 10286.8 PASS AC=2;AF=1;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,341:341:99:10315,1023,0 19 8032680 rs1077340 C T 4625.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=1.853 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4654,461,0 19 8121096 rs74959615 G A 1175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=6.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=1.396;SOR=0.272 GT:AD:DP:GQ:PL 0/1:53,43:96:99:1204,0,1419 19 8121360 rs2032887 A G 2467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=6.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=0.768;SOR=0.689 GT:AD:DP:GQ:PL 0/1:85,110:195:99:2496,0,2014 19 8138054 rs7257948 C A 6287.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.06;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=3.029;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.2;ReadPosRankSum=0.9;SOR=0.135 GT:AD:DP:GQ:PL 1/1:2,238:240:99:6316,692,0 19 8145921 rs2303168 C T 4303.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4332,429,0 19 8152725 rs12460643 A G 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.73;ReadPosRankSum=3.62;SOR=0.706 GT:AD:DP:GQ:PL 0/1:98,85:183:99:1809,0,2355 19 8159362 rs7245429 G T 1386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=5.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.97;ReadPosRankSum=-0.557;SOR=0.868 GT:AD:DP:GQ:PL 0/1:106,68:174:99:1415,0,2708 19 8159409 rs7245552 G T 4527.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.984;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.4;ReadPosRankSum=-0.943;SOR=0.287 GT:AD:DP:GQ:PL 1/1:1,153:154:99:4556,451,0 19 8160334 rs12608849 G A 2288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.02;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.38;ReadPosRankSum=0.022;SOR=0.804 GT:AD:DP:GQ:PL 0/1:78,93:171:99:2317,0,1842 19 8161450 rs3829817 C T 1996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.229;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.516;SOR=0.666 GT:AD:DP:GQ:PL 0/1:77,83:160:99:2025,0,1842 19 8165868 rs56182050 G A 622.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.24;ReadPosRankSum=1.078;SOR=0.62 GT:AD:DP:GQ:PL 0/1:53,33:86:99:651,0,1337 19 8174650 rs3813779 A G 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.956;SOR=0.822 GT:AD:DP:GQ:PL 0/1:85,81:166:99:2056,0,2145 19 8176009 rs17160196 C T 3348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.31;ReadPosRankSum=-1.363;SOR=0.781 GT:AD:DP:GQ:PL 0/1:110,124:234:99:3377,0,2746 19 8176569 rs35306870 G A 1050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.781;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=3.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.221;SOR=1.101 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1079,0,1480 19 8176640 rs12975322 C T 1073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.137;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.72;ReadPosRankSum=-0.058;SOR=0.764 GT:AD:DP:GQ:PL 0/1:88,51:139:99:1102,0,2179 19 8176919 rs4804264 C T 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.272;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=-0.152;SOR=0.997 GT:AD:DP:GQ:PL 0/1:64,50:114:99:1084,0,1491 19 8186281 rs57957109 A AG 2086.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.125;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=1.363;SOR=0.62 GT:AD:DP:GQ:PL 0/1:87,83:170:99:2124,0,2236 19 8191184 rs35025963 C T 1703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.128;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-1.384;SOR=0.933 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1732,0,1659 19 8191238 rs10906993 C T 5647.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.12;SOR=0.757 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,128:128:99:1|1:8191238_C_T:5676,397,0 19 8191248 rs10906994 A G 5793.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.89;SOR=0.82 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,132:132:99:1|1:8191238_C_T:5822,406,0 19 8196444 rs4804271 C T 4317.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=1.194 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4346,446,0 19 8196643 rs61744943 G A 2901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.467;SOR=0.81 GT:AD:DP:GQ:PL 0/1:121,128:249:99:2930,0,3009 19 8201266 rs62123271 G T 3682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.479;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.581;SOR=0.669 GT:AD:DP:GQ:PL 0/1:162,162:324:99:3711,0,4173 19 8321497 rs199930954 T A 1117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.007;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-0.25;SOR=0.595 GT:AD:DP:GQ:PL 0/1:58,47:105:99:1146,0,1399 19 8326904 rs36259 G A 9547.77 PASS AC=2;AF=1;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,339:339:99:9576,1014,0 19 8389520 rs1019757 C T 2840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.414;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.968;SOR=0.645 GT:AD:DP:GQ:PL 0/1:98,117:215:99:2869,0,2609 19 8389723 rs2972571 T A 1823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.508;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.327;SOR=0.747 GT:AD:DP:GQ:PL 0/1:78,74:152:99:1852,0,1854 19 8398597 rs2913954 G A 1268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.914;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.197;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.06;ReadPosRankSum=-0.212;SOR=0.973 GT:AD:DP:GQ:PL 0/1:85,55:140:99:1297,0,2060 19 8398975 rs2913955 C T 3005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.394;SOR=0.788 GT:AD:DP:GQ:PL 0/1:124,128:252:99:3034,0,2948 19 8399628 rs710949 A G 3164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.062;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.76;ReadPosRankSum=-0.427;SOR=0.758 GT:AD:DP:GQ:PL 0/1:112,118:230:99:3193,0,2839 19 8399709 rs890852 C A 2770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.131;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=0.766;SOR=0.857 GT:AD:DP:GQ:PL 0/1:152,116:268:99:2799,0,3864 19 8399799 rs890851 G A 2187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.795;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=1.886;SOR=0.775 GT:AD:DP:GQ:PL 0/1:130,84:214:99:2216,0,3432 19 8399849 rs890850 C A 2757.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.433;SOR=0.752 GT:AD:DP:GQ:PL 0/1:123,110:233:99:2786,0,3303 19 8438716 rs11672433 G A 2700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.587;SOR=0.712 GT:AD:DP:GQ:PL 0/1:135,121:256:99:2729,0,3223 19 8468337 rs2230876 C T 8403.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8432,862,0 19 8551094 rs2230647 T C 12257.8 PASS AC=2;AF=1;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,398:398:99:12286,1193,0 19 8553630 rs6992 C T 4977.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.2;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5006,545,0 19 8563456 rs2910435 C G 7390.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7419,746,0 19 8645786 rs7252299 A C 3638.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3667,369,0 19 8808900 rs10410943 A G 2933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.474;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=-0.242;SOR=0.65 GT:AD:DP:GQ:PL 0/1:176,121:297:99:2962,0,4342 19 8808942 rs2340550 A G 3406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.935;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=1.77;SOR=0.62 GT:AD:DP:GQ:PL 0/1:193,145:338:99:3435,0,4423 19 8841558 rs28324 T C 2208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.911;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=0.137;SOR=0.69 GT:AD:DP:GQ:PL 0/1:81,85:166:99:2237,0,2015 19 8953801 rs2969292 T C 5837.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.25;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5866,542,0 19 8953922 rs2972588 C T 4183.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4212,424,0 19 8962389 rs72999925 G A 497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.16;ReadPosRankSum=1.19;SOR=0.672 GT:AD:DP:GQ:PL 0/1:37,24:61:99:526,0,908 19 8987348 rs150904213 A AAG 1663.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.701;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=30.81;ReadPosRankSum=0.942;SOR=0.213 GT:AD:DP:GQ:PL 0/1:5,49:54:27:1701,0,27 19 8999453 rs11085765 C T 9917.77 PASS AC=2;AF=1;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.775 GT:AD:DP:GQ:PL 1/1:0,354:354:99:9946,1060,0 19 9001822 rs12976111 A G 3135.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.8;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,70:70:99:1|1:9001822_A_G:3164,214,0 19 9001833 rs12976122 A G 3380.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.48;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,76:76:99:1|1:9001822_A_G:3409,229,0 19 9001835 rs12985778 G A 3380.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.48;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,76:76:99:1|1:9001822_A_G:3409,229,0 19 9003618 rs11085776 C T 2914.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.03;SOR=1.043 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2943,311,0 19 9003645 rs11085777 G A 974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.629;SOR=0.583 GT:AD:DP:GQ:PL 0/1:37,42:79:99:1003,0,905 19 9003706 rs11085778 T G 872.77 PASS AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.37;SOR=4.091 GT:AD:DP:GQ:PL 1/1:0,24:24:72:901,72,0 19 9005674 rs4804091 G A 2726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.826;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=1.438;SOR=0.685 GT:AD:DP:GQ:PL 0/1:125,122:247:99:2755,0,3128 19 9005719 rs4804375 A G 5285.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=1.265 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5314,531,0 19 9014551 rs12459127 T C 3487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.124;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=5.848;MLEAC=1;MLEAF=0.5;MQ=57.5;MQRankSum=-3.612;QD=16.15;ReadPosRankSum=2.911;SOR=0.405 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,94:216:99:0|1:9014551_T_C:3516,0,6356 19 9014569 rs12462963 A G 3550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.12;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.5;MQ=55.75;MQRankSum=-2.227;QD=15.31;ReadPosRankSum=0.378;SOR=0.51 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,96:232:99:0|1:9014551_T_C:3579,0,6664 19 9020154 rs11882881 A G 2981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=5.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=0.085;SOR=0.426 GT:AD:DP:GQ:PL 0/1:134,116:250:99:3010,0,3599 19 9024994 rs67631215 C T 3206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=4.327;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.869;SOR=0.488 GT:AD:DP:GQ:PL 0/1:111,140:251:99:3235,0,2613 19 9028373 rs56396897 G A 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.476;SOR=0.844 GT:AD:DP:GQ:PL 0/1:88,69:157:99:1763,0,2326 19 9046876 rs4804378 G T 2306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.73;ReadPosRankSum=0.94;SOR=0.892 GT:AD:DP:GQ:PL 0/1:82,86:168:99:2335,0,2140 19 9048320 rs56334501 C T 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.583;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=4.411;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=2.29;SOR=0.573 GT:AD:DP:GQ:PL 0/1:91,83:174:99:2088,0,3568 19 9048342 rs10854118 C T 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=4.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-1.698;SOR=0.736 GT:AD:DP:GQ:PL 0/1:86,97:183:99:2432,0,3179 19 9048421 rs56194405 T C 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.828;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.756;SOR=0.632 GT:AD:DP:GQ:PL 0/1:105,99:204:99:2487,0,2625 19 9049339 rs11883220 C G 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-0.272;SOR=0.688 GT:AD:DP:GQ:PL 0/1:74,78:152:99:1868,0,1801 19 9049726 rs11670328 G A 2907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.91;ReadPosRankSum=-0.824;SOR=0.59 GT:AD:DP:GQ:PL 0/1:74,121:195:99:2936,0,1692 19 9049910 rs56307190 C T 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.752;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.069;SOR=0.633 GT:AD:DP:GQ:PL 0/1:90,79:169:99:2002,0,2253 19 9056982 rs11670318 G A 2316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.225;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.488;SOR=0.889 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,100:186:99:0|1:9056982_G_A:2345,0,3203 19 9056989 rs4804381 C G 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.59;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=5.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.12;ReadPosRankSum=0.812;SOR=0.426 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,81:180:99:1|0:9056982_G_A:1849,0,3806 19 9057408 rs1423051 A G 3835.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3864,386,0 19 9057687 rs1895364 A G 5364.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5393,495,0 19 9057721 rs2216662 C T 6083.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6112,602,0 19 9058624 rs11878666 G A 2444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=1.254;SOR=0.52 GT:AD:DP:GQ:PL 0/1:118,102:220:99:2473,0,3186 19 9058907 rs1833777 G C 2780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=0.198;SOR=0.665 GT:AD:DP:GQ:PL 0/1:85,112:197:99:2809,0,2021 19 9058942 rs1833778 C T 6108.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6137,624,0 19 9059808 rs7508222 A G 7533.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7562,722,0 19 9060085 rs4804382 C T 2394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=3.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=0.262;SOR=0.518 GT:AD:DP:GQ:PL 0/1:106,103:209:99:2423,0,2619 19 9060541 rs11882256 C T 1294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-0.309;SOR=0.576 GT:AD:DP:GQ:PL 0/1:58,45:103:99:1323,0,1751 19 9060572 rs56405542 G A 804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.421;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=1.782;SOR=0.356 GT:AD:DP:GQ:PL 0/1:40,28:68:99:833,0,1162 19 9060605 rs2194168 G A 2025.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.93;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2054,174,0 19 9060656 rs2216663 C T 661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.608;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.14;SOR=0.524 GT:AD:DP:GQ:PL 0/1:41,22:63:99:690,0,1232 19 9060812 rs1820099 T C 5171.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5200,533,0 19 9061559 rs1423052 C G 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.353;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.5;ReadPosRankSum=0.838;SOR=0.833 GT:AD:DP:GQ:PL 0/1:46,52:98:99:1449,0,1026 19 9062415 rs12978757 T G 2932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.718;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=-1.425;SOR=0.888 GT:AD:DP:GQ:PL 0/1:101,113:214:99:2961,0,2279 19 9062544 rs2547063 T G 5550.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.27;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5579,516,0 19 9063678 rs2547064 T G 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.692;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=0.831;SOR=0.952 GT:AD:DP:GQ:PL 0/1:83,73:156:99:1828,0,2004 19 9063935 rs2252675 G A 2502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=1.394;SOR=0.661 GT:AD:DP:GQ:PL 0/1:120,102:222:99:2531,0,3162 19 9065632 rs1867691 T C 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.439;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=3.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.5;ReadPosRankSum=-0.398;SOR=1.096 GT:AD:DP:GQ:PL 0/1:45,59:104:99:1640,0,1086 19 9066390 rs11667414 G A 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.899;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.232;SOR=0.664 GT:AD:DP:GQ:PL 0/1:70,83:153:99:2031,0,1896 19 9066874 rs12609150 G T 2340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.935;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=0.826;SOR=0.543 GT:AD:DP:GQ:PL 0/1:97,105:202:99:2369,0,2460 19 9069792 rs1862458 G A 1880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.431;SOR=0.931 GT:AD:DP:GQ:PL 0/1:79,82:161:99:1909,0,1936 19 9069892 rs1862460 A C 1749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.88;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=1.259;SOR=0.724 GT:AD:DP:GQ:PL 0/1:69,66:135:99:1778,0,1770 19 9070194 rs1344572 A G 3309.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.77;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3338,302,0 19 9070225 rs1559172 G C 4351.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34;SOR=1.224 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4380,384,0 19 9070837 rs2547067 G A 5102.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5131,528,0 19 9071763 rs10422567 T A 2467.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2496,231,0 19 9071834 rs17000803 G C 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.505;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.189;SOR=0.72 GT:AD:DP:GQ:PL 0/1:61,62:123:99:1655,0,1563 19 9072221 rs66498329 G A 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.564;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-1.696;SOR=0.644 GT:AD:DP:GQ:PL 0/1:72,70:142:99:1762,0,1756 19 9072313 rs2121133 A G 1644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.246;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.273;SOR=0.775 GT:AD:DP:GQ:PL 0/1:84,68:152:99:1673,0,2061 19 9072742 rs2591590 T C 1846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=1.145;SOR=0.85 GT:AD:DP:GQ:PL 0/1:77,79:156:99:1875,0,2000 19 9072875 rs73009098 G A 1969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=-0.917;SOR=0.462 GT:AD:DP:GQ:PL 0/1:51,78:129:99:1998,0,1215 19 9072975 rs17000816 G A 1987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.2;ReadPosRankSum=1;SOR=0.88 GT:AD:DP:GQ:PL 0/1:63,77:140:99:2016,0,1433 19 9074073 rs72486387 G A 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.949;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=1.593;SOR=0.584 GT:AD:DP:GQ:PL 0/1:76,55:131:99:1170,0,2086 19 9074950 rs2591591 G T 2038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=0.484;SOR=0.891 GT:AD:DP:GQ:PL 0/1:80,83:163:99:2067,0,2014 19 9075217 rs2547068 T A 2383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.536;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.542;SOR=0.779 GT:AD:DP:GQ:PL 0/1:119,102:221:99:2412,0,2929 19 9075346 rs2591592 T A 2122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=1.203;SOR=0.852 GT:AD:DP:GQ:PL 0/1:114,86:200:99:2151,0,3026 19 9075584 rs2547069 T A 2277.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.262;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=1.817;SOR=0.711 GT:AD:DP:GQ:PL 0/1:90,100:190:99:2306,0,2480 19 9075635 rs2547070 G A 2281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.707;SOR=0.784 GT:AD:DP:GQ:PL 0/1:86,96:182:99:2310,0,2269 19 9075737 rs2547071 T C 1876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.818;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=9.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.556;SOR=1.272 GT:AD:DP:GQ:PL 0/1:86,69:155:99:1905,0,2186 19 9075969 rs2591593 C T 2445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=0.424;SOR=0.72 GT:AD:DP:GQ:PL 0/1:110,103:213:99:2474,0,2662 19 9076083 rs2547072 G A 1835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.397;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=11.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=0.288;SOR=0.672 GT:AD:DP:GQ:PL 0/1:95,82:177:99:1864,0,2643 19 9076163 rs2547073 C T 2127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.46;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.278;SOR=0.726 GT:AD:DP:GQ:PL 0/1:97,88:185:99:2156,0,2497 19 9076278 rs953551 G A 1495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.699;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=1.089;SOR=0.981 GT:AD:DP:GQ:PL 0/1:77,65:142:99:1524,0,1830 19 9076728 rs2591594 C T 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.064;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.539;SOR=0.748 GT:AD:DP:GQ:PL 0/1:90,81:171:99:1914,0,2080 19 9076858 rs2547074 C T 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=1;QD=12.13;ReadPosRankSum=1.07;SOR=0.754 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1848,0,2001 19 9076929 rs2547075 T G 2240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.541;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.207;SOR=0.548 GT:AD:DP:GQ:PL 0/1:100,88:188:99:2269,0,2365 19 9076950 rs2547076 C A 2046.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.047;SOR=0.662 GT:AD:DP:GQ:PL 0/1:102,87:189:99:2075,0,2448 19 9076991 rs2591595 C T 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.603;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-0.534;SOR=0.818 GT:AD:DP:GQ:PL 0/1:95,90:185:99:2250,0,2274 19 9077060 rs2591596 C T 1471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.191;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=5.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=1.655;SOR=0.697 GT:AD:DP:GQ:PL 0/1:77,61:138:99:1500,0,2359 19 9077264 rs1862461 T G 1853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.408;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=4.826;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.273;SOR=0.568 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1882,0,1928 19 9077436 rs1862462 G A 2005.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.325;SOR=0.716 GT:AD:DP:GQ:PL 0/1:79,80:159:99:2034,0,2160 19 9077581 rs73011014 G T 2078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.057;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=4.809;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-1.633;SOR=0.631 GT:AD:DP:GQ:PL 0/1:117,90:207:99:2107,0,2875 19 9077803 rs2591597 T C 1496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.283;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=1.079;SOR=0.606 GT:AD:DP:GQ:PL 0/1:92,66:158:99:1525,0,2202 19 9080462 rs2547065 C G 2855.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2884,291,0 19 9083124 rs12608495 G A 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=0.418;SOR=0.847 GT:AD:DP:GQ:PL 0/1:62,80:142:99:2059,0,1598 19 9083427 rs1609453 A G 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.61;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=7.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=0.167;SOR=0.338 GT:AD:DP:GQ:PL 0/1:66,79:145:99:1952,0,1510 19 9083457 rs17000886 C T 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.105;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-1.666;SOR=0.619 GT:AD:DP:GQ:PL 0/1:71,84:155:99:2062,0,1733 19 9084183 rs1609460 G A 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=0.788;SOR=0.74 GT:AD:DP:GQ:PL 0/1:88,94:182:99:2393,0,2276 19 9084299 rs1609458 T C 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.37;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.625;SOR=0.776 GT:AD:DP:GQ:PL 0/1:102,83:185:99:2195,0,2454 19 9085004 rs11085805 T C 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.326;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.622;SOR=0.779 GT:AD:DP:GQ:PL 0/1:66,60:126:99:1580,0,1553 19 9085643 rs1574479 A G 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=3.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.39;ReadPosRankSum=-2.348;SOR=1.402 GT:AD:DP:GQ:PL 0/1:13,22:35:99:567,0,321 19 9086184 rs74999347 G A 2719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=4.178;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=-2.042;SOR=0.814 GT:AD:DP:GQ:PL 0/1:82,110:192:99:2748,0,2023 19 9086318 rs4520945 G A 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.71;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=1.075;SOR=0.709 GT:AD:DP:GQ:PL 0/1:99,76:175:99:1823,0,2851 19 9086819 rs1823056 G A 2157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=11.931;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-1.162;SOR=1.375 GT:AD:DP:GQ:PL 0/1:114,91:205:99:2186,0,3020 19 9087615 rs1596798 T A 6665.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.29;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6694,637,0 19 9087758 rs12611293 G A 2793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.5;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=-1.6;SOR=0.66 GT:AD:DP:GQ:PL 0/1:103,116:219:99:2822,0,2466 19 9088017 rs1596797 T G 2158.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.196;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=4.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=-1.236;SOR=0.538 GT:AD:DP:GQ:PL 0/1:80,82:162:99:2187,0,1967 19 9088330 rs17000947 G A 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=2.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-2.042;SOR=0.587 GT:AD:DP:GQ:PL 0/1:101,109:210:99:2426,0,2363 19 9088772 rs17000950 T C 2127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=1.471;SOR=0.772 GT:AD:DP:GQ:PL 0/1:89,89:178:99:2156,0,2264 19 9204307 rs4804097 A G 1519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.133;SOR=0.625 GT:AD:DP:GQ:PL 0/1:83,70:153:99:1548,0,2110 19 9213026 rs4804400 T C 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=4.847;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.174;SOR=0.426 GT:AD:DP:GQ:PL 0/1:50,55:105:99:1432,0,1329 19 9213079 rs4804401 A C 1528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.541;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.119;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.484;SOR=0.413 GT:AD:DP:GQ:PL 0/1:74,63:137:99:1557,0,1574 19 9213132 rs12610094 A G 1700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.958;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.734;SOR=1.001 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1729,0,1841 19 9236698 rs111279560 G GATGGT 1702.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.251;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.01;ReadPosRankSum=1.759;SOR=0.808 GT:AD:DP:GQ:PL 0/1:34,40:74:99:1740,0,2184 19 9236886 rs10424352 A G 2172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=4.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.297;SOR=1.069 GT:AD:DP:GQ:PL 0/1:81,85:166:99:2201,0,2016 19 9237435 rs10407484 A G 2478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.316;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.949;SOR=0.554 GT:AD:DP:GQ:PL 0/1:105,105:210:99:2507,0,2482 19 9237542 rs10414255 T C 1669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.419;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=1.941;SOR=0.62 GT:AD:DP:GQ:PL 0/1:79,73:152:99:1698,0,1826 19 9324758 rs61732676 A G 2066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.58;MQRankSum=-1.33;QD=13.33;ReadPosRankSum=0.169;SOR=0.667 GT:AD:DP:GQ:PL 0/1:73,82:155:99:2095,0,1919 19 9362343 rs2240927 C T 1082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.567;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.565;SOR=0.637 GT:AD:DP:GQ:PL 0/1:68,46:114:99:1111,0,1668 19 9362443 rs2240928 C T 1174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=1.179;SOR=0.762 GT:AD:DP:GQ:PL 0/1:71,52:123:99:1203,0,1908 19 9406562 . T C 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.357;ClippingRankSum=0;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=1.151;SOR=0.685 GT:AD:DP:GQ:PL 0/1:116,77:193:99:2111,0,3011 19 9949152 rs2233682 G A 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-1.792;SOR=0.838 GT:AD:DP:GQ:PL 0/1:80,99:179:99:2163,0,1752 19 9968434 rs2303100 C T 2564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.78;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=2.763;SOR=0.829 GT:AD:DP:GQ:PL 0/1:101,105:206:99:2593,0,2320 19 10097443 . TA T 46.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.49;ReadPosRankSum=-1.668;SOR=0.344 GT:AD:DP:GQ:PL 0/1:80,15:97:84:84,0,1941 19 10112346 rs2287803 T C 4991.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.28;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,150:150:99:5020,451,0 19 10221151 rs2305792 C G 7133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0;DB;DP=529;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-1.556;SOR=0.629 GT:AD:DP:GQ:PL 0/1:249,277:526:99:7162,0,6503 19 10221855 rs117177141 C T 3786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=4.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=1.106;SOR=0.498 GT:AD:DP:GQ:PL 0/1:160,157:317:99:3815,0,3936 19 10224526 rs3745600 C T 4830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DB;DP=443;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=0.806;SOR=0.628 GT:AD:DP:GQ:PL 0/1:237,204:441:99:4859,0,5756 19 10224580 rs117405797 T C 5358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.25;ReadPosRankSum=0.266;SOR=0.778 GT:AD:DP:GQ:PL 0/1:169,207:376:99:5387,0,4204 19 10225777 rs7401 A G 2819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.22;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=1.944;SOR=0.722 GT:AD:DP:GQ:PL 0/1:123,126:249:99:2848,0,2723 19 10226256 rs7710 A G 2068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.401;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=20.088;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.916;QD=11.18;ReadPosRankSum=-0.266;SOR=1.91 GT:AD:DP:GQ:PL 0/1:101,84:185:99:2097,0,2633 19 10226340 rs150759321 GTGCC G 2921.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=7.484;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=1.96;QD=10.78;ReadPosRankSum=0.44;SOR=1.078 GT:AD:DP:GQ:PL 0/1:147,124:271:99:2959,0,6181 19 10229726 rs149991692 TGGCAGTCCTCACTCACCTCCC T 2528.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.296;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.53;ReadPosRankSum=3.181;SOR=0.812 GT:AD:DP:GQ:PL 0/1:86,67:153:99:2566,0,4500 19 10265312 rs721186 T C 11044.8 PASS AC=2;AF=1;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,371:371:99:11073,1113,0 19 10334663 rs2116942 T G 3706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.636;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=21.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-1.107;SOR=0.437 GT:AD:DP:GQ:PL 0/1:137,164:301:99:3735,0,2812 19 10369086 rs17000211 C T 3262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.337;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.25;ReadPosRankSum=0.093;SOR=0.61 GT:AD:DP:GQ:PL 0/1:85,129:214:99:3291,0,2258 19 10370133 rs8104608 G A 3935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.152;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.021;SOR=0.864 GT:AD:DP:GQ:PL 0/1:185,155:340:99:3964,0,4859 19 10370490 rs1059840 T A 3320.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.69;ReadPosRankSum=0.8;SOR=0.541 GT:AD:DP:GQ:PL 0/1:94,132:226:99:3349,0,2231 19 10394792 rs1799969 G A 2716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.337;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=0.911;SOR=0.62 GT:AD:DP:GQ:PL 0/1:114,122:236:99:2745,0,2486 19 10395683 rs5498 A G 3003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.153;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=-2.255;SOR=0.683 GT:AD:DP:GQ:PL 0/1:108,121:229:99:3032,0,2494 19 10402938 rs1056538 G A 2376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=1.889;SOR=0.755 GT:AD:DP:GQ:PL 0/1:121,108:229:99:2405,0,2973 19 10403368 rs2228615 G A 2549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.177;SOR=0.706 GT:AD:DP:GQ:PL 0/1:119,111:230:99:2578,0,3021 19 10407169 rs710845 G C 3128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.871;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=2.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.708;SOR=0.538 GT:AD:DP:GQ:PL 0/1:140,104:244:99:3157,0,4152 19 10419130 rs281417 C T 3482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.419;SOR=0.786 GT:AD:DP:GQ:PL 0/1:132,139:271:99:3511,0,3418 19 10426422 rs378395 A C 2838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.949;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=6.206;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.456;SOR=1.085 GT:AD:DP:GQ:PL 0/1:130,115:245:99:2867,0,3196 19 10426512 rs78295726 C T 2164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.51;ReadPosRankSum=-0.488;SOR=0.682 GT:AD:DP:GQ:PL 0/1:99,89:188:99:2193,0,2561 19 10426628 rs395782 T C 2999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.333;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.15;ReadPosRankSum=-0.68;SOR=0.594 GT:AD:DP:GQ:PL 0/1:101,97:198:99:3028,0,2368 19 10431799 rs281425 G T 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.647;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.049;SOR=0.697 GT:AD:DP:GQ:PL 0/1:99,86:185:99:2148,0,2427 19 10449392 rs2304240 A G 4580.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4609,455,0 19 10450285 rs281414 G A 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.63;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.23;ReadPosRankSum=0.402;SOR=0.537 GT:AD:DP:GQ:PL 0/1:52,45:97:99:1021,0,1229 19 10469975 rs12720356 A C 2274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.759;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=-0.113;SOR=0.455 GT:AD:DP:GQ:PL 0/1:76,87:163:99:2303,0,1826 19 10472933 rs280519 A G 2736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.01;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.33;ReadPosRankSum=-0.361;SOR=0.618 GT:AD:DP:GQ:PL 0/1:85,106:191:99:2765,0,2185 19 10475652 rs2304256 C A 2456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.285;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=1.719;SOR=0.973 GT:AD:DP:GQ:PL 0/1:84,103:187:99:2485,0,2117 19 10556897 rs118115488 C T 2352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=0.148;SOR=0.908 GT:AD:DP:GQ:PL 0/1:119,103:222:99:2381,0,2954 19 10561261 . A AT 156.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0;DP=275;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.64;ReadPosRankSum=-1.078;SOR=0.821 GT:AD:DP:GQ:PL 0/1:207,38:270:99:194,0,4483 19 10625067 rs6511701 A C 4505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.725;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=1.584;SOR=0.74 GT:AD:DP:GQ:PL 0/1:136,170:306:99:4534,0,3338 19 10659630 . G T 3218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0;DP=273;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.536;SOR=0.825 GT:AD:DP:GQ:PL 0/1:132,141:273:99:3247,0,3166 19 10668452 rs3745255 A G 11287.8 PASS AC=2;AF=1;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,360:360:99:11316,1080,0 19 10668673 rs1982074 A G 2596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.999;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.381;SOR=0.608 GT:AD:DP:GQ:PL 0/1:102,106:208:99:2625,0,2749 19 10670184 rs3826709 C G 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-1.747;SOR=0.734 GT:AD:DP:GQ:PL 0/1:75,62:137:99:1823,0,2370 19 10670992 rs3745249 C T 1690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=1.451;SOR=0.703 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1719,0,2009 19 10671664 rs7259124 T C 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.794;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-1.991;SOR=0.963 GT:AD:DP:GQ:PL 0/1:62,48:110:99:1031,0,1293 19 10672493 rs12984043 C T 1356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=4.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.563;SOR=0.355 GT:AD:DP:GQ:PL 0/1:60,58:118:99:1385,0,1521 19 10676423 rs3745245 G A 1142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=5.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.4;ReadPosRankSum=0.556;SOR=0.9 GT:AD:DP:GQ:PL 0/1:83,53:136:99:1171,0,2240 19 10676681 rs3218222 T C 1340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.473;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=3.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.499;SOR=0.419 GT:AD:DP:GQ:PL 0/1:60,51:111:99:1369,0,1568 19 10679240 rs1968445 C G 5260.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5289,522,0 19 10690557 rs10426276 G C 3918.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.49;SOR=1.713 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3947,350,0 19 10692000 rs1045361 T C 2994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.454;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=1.167;SOR=0.624 GT:AD:DP:GQ:PL 0/1:178,131:309:99:3023,0,4354 19 10738639 rs3087969 C T 4329.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4358,441,0 19 10742170 rs2288904 A G 6481.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.77;SOR=0.979 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6510,612,0 19 10742287 rs1560711 C T 7272.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7301,708,0 19 10742443 rs1560710 C T 6532.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6561,639,0 19 10745764 rs2163832 T C 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.646;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=1.755;SOR=0.607 GT:AD:DP:GQ:PL 0/1:87,89:176:99:2148,0,1896 19 10939792 rs2229920 T C 3832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.915;SOR=0.629 GT:AD:DP:GQ:PL 0/1:140,160:300:99:3861,0,3464 19 11105608 rs7935 T C 1495.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=1.377;SOR=0.646 GT:AD:DP:GQ:PL 0/1:80,66:146:99:1524,0,1928 19 11113997 rs74942410 G T 746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-2.343;SOR=0.957 GT:AD:DP:GQ:PL 0/1:50,32:82:99:775,0,1459 19 11145691 rs28997582 C T 2284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-1.638;SOR=0.517 GT:AD:DP:GQ:PL 0/1:101,99:200:99:2313,0,2274 19 11210912 rs2228671 C T 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.12;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.94;ReadPosRankSum=0.179;SOR=0.82 GT:AD:DP:GQ:PL 0/1:88,59:147:99:1196,0,2038 19 11221454 rs2738442 T C 5821.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.61;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5850,478,0 19 11221457 rs12710260 G C 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.658;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.355;SOR=0.539 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1720,0,1943 19 11222300 rs11669576 G A 1955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.933;SOR=0.676 GT:AD:DP:GQ:PL 0/1:115,92:207:99:1984,0,2683 19 11224181 rs1003723 C T 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.52;SOR=0.966 GT:AD:DP:GQ:PL 0/1:64,64:128:99:1609,0,1605 19 11224265 rs5930 A G 4539.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.857 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4568,428,0 19 11227602 rs688 C T 1417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.996;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.048;SOR=0.481 GT:AD:DP:GQ:PL 0/1:80,63:143:99:1446,0,1910 19 11230881 rs5925 T C 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.073;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.448;SOR=0.651 GT:AD:DP:GQ:PL 0/1:83,57:140:99:1546,0,1996 19 11233941 rs5927 A G 2214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.092;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=3.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=1.342;SOR=0.457 GT:AD:DP:GQ:PL 0/1:73,89:162:99:2243,0,1674 19 11277232 rs4804573 G A 2587.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2616,270,0 19 11303943 rs3745681 A G 2872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.811;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.186;SOR=0.794 GT:AD:DP:GQ:PL 0/1:142,111:253:99:2901,0,3495 19 11304240 . TG T 3867.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0;DP=260;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.88;ReadPosRankSum=0.749;SOR=0.702 GT:AD:DP:GQ:PL 0/1:144,116:260:99:3905,0,4953 19 11313256 rs3745682 G A 4333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=4.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-1.436;SOR=0.873 GT:AD:DP:GQ:PL 0/1:168,185:353:99:4362,0,4082 19 11319491 rs8409 G A 3530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.062;SOR=0.687 GT:AD:DP:GQ:PL 0/1:167,150:317:99:3559,0,4357 19 11326119 rs2304155 A G 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.767;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.26;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=-0.689;SOR=0.581 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,64:162:99:0|1:11326119_A_G:2294,0,5016 19 11326125 rs2304154 C T 2168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.261;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=-0.005;SOR=0.624 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,57:155:99:0|1:11326119_A_G:2197,0,5028 19 11327571 rs4804150 C T 1853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.14;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=1.305;SOR=0.798 GT:AD:DP:GQ:PL 0/1:55,70:125:99:1882,0,1644 19 11327608 rs4804151 T C 3863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.22;ReadPosRankSum=1.797;SOR=0.678 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,100:201:99:0|1:11327608_T_C:3892,0,4710 19 11327626 rs4804152 A G 4221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.889;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.52;ReadPosRankSum=0.391;SOR=0.567 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,118:241:99:0|1:11327608_T_C:4250,0,5238 19 11350340 rs892066 C G 2846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.245;SOR=0.579 GT:AD:DP:GQ:PL 0/1:112,116:228:99:2875,0,3021 19 11358799 rs12978266 G A 1163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.233;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=3.898;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=-0.9;QD=10.88;ReadPosRankSum=1.422;SOR=1.107 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1192,0,1726 19 11363146 rs8113582 A T 1663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=1.085;SOR=0.553 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1692,0,1913 19 11411997 . TA T 110.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0;DP=108;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.571;QD=1.26;ReadPosRankSum=0.055;SOR=0.786 GT:AD:DP:GQ:PL 0/1:72,16:102:99:148,0,1703 19 11465316 rs6887 G C 6776.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=1.083 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6805,627,0 19 11526759 rs160838 G A 2744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=5.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.417;SOR=0.587 GT:AD:DP:GQ:PGT:PID:PL 0/1:114,122:236:99:0|1:11526759_G_A:2773,0,4276 19 11526765 rs167479 G T 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=6.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.125;SOR=0.917 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,110:229:99:1|0:11526759_G_A:2499,0,4715 19 11529958 rs1549168 C T 1808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.894;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.283;SOR=0.591 GT:AD:DP:GQ:PL 0/1:88,75:163:99:1837,0,2062 19 11541712 rs34094 T C 5701.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=0.738 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5730,539,0 19 11558240 rs186375 T C 3790.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=31.59;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3819,360,0 19 11558340 rs3217229 AGAG A 490.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=3.406;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=4.704;QD=2.3;ReadPosRankSum=-0.559;SOR=1.026 GT:AD:DP:GQ:PL 0/1:185,28:219:99:528,0,7373 19 11598483 rs311805 T C 4009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=-0.315;SOR=0.895 GT:AD:DP:GQ:PL 0/1:178,161:339:99:4038,0,4464 19 11708464 rs72997090 G C 1199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.597;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=1.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.37;ReadPosRankSum=1.429;SOR=0.558 GT:AD:DP:GQ:PL 0/1:71,57:128:99:1228,0,1914 19 11727503 rs4545929 T C 1160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.82;ReadPosRankSum=-0.241;SOR=1.009 GT:AD:DP:GQ:PL 0/1:38,46:84:99:1189,0,878 19 11891003 rs799193 G A 2157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=2.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.605;SOR=0.536 GT:AD:DP:GQ:PL 0/1:102,91:193:99:2186,0,2442 19 11918093 rs71166630 AT A 905.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=0.924;QD=12.24;ReadPosRankSum=-0.348;SOR=0.796 GT:AD:DP:GQ:PL 0/1:33,41:74:99:943,0,783 19 11941221 rs424132 T A 3632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.5;MQ=57.97;MQRankSum=-8.028;QD=10.38;ReadPosRankSum=0.732;SOR=0.89 GT:AD:DP:GQ:PL 0/1:195,155:350:99:3661,0,4903 19 11942362 rs427880 A G 4863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.588;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=1.017;QD=13.74;ReadPosRankSum=-2.134;SOR=0.785 GT:AD:DP:GQ:PL 0/1:175,179:354:99:4892,0,4300 19 11942615 rs394416 A C 3896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.282;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=-0.481;SOR=0.693 GT:AD:DP:GQ:PL 0/1:143,149:292:99:3925,0,3371 19 11942771 rs436411 G A 3728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=4.02;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=0.691;SOR=0.497 GT:AD:DP:GQ:PL 0/1:129,145:274:99:3757,0,3370 19 11943697 rs400106 G A 8687.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.308;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.27;ReadPosRankSum=2.07;SOR=0.452 GT:AD:DP:GQ:PL 1/1:1,286:287:99:8716,835,0 19 11998777 rs3810314 C T 1371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=4.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.051;SOR=1.117 GT:AD:DP:GQ:PL 0/1:69,62:131:99:1400,0,1546 19 12015545 rs111999105 G A 4327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.84;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-2.302;QD=10.87;ReadPosRankSum=0.199;SOR=0.698 GT:AD:DP:GQ:PL 0/1:204,194:398:99:4356,0,4965 19 12059467 rs73509026 C G 2614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.591;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=1.069;SOR=0.598 GT:AD:DP:GQ:PL 0/1:143,98:241:99:2643,0,3916 19 12089903 rs112017572 G A 2852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.062;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.496;SOR=0.646 GT:AD:DP:GQ:PL 0/1:106,110:216:99:2881,0,2739 19 12146370 rs3745672 T C 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=1.538;SOR=0.525 GT:AD:DP:GQ:PL 0/1:93,83:176:99:1910,0,2274 19 12154799 rs67102109 G C 3115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.686;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=0.645;SOR=0.739 GT:AD:DP:GQ:PL 0/1:131,115:246:99:3144,0,3390 19 12157253 rs10417006 G A 586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.639;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.589;SOR=0.863 GT:AD:DP:GQ:PL 0/1:26,23:49:99:615,0,701 19 12186148 rs10424893 T C 3771.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3800,392,0 19 12186611 rs7259684 A G 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.106;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=1.194;SOR=0.582 GT:AD:DP:GQ:PL 0/1:61,74:135:99:2028,0,1426 19 12186732 rs76842919 A G 1339.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.309;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=7.904;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.247;SOR=0.952 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,55:132:99:0|1:12186732_A_G:1368,0,2148 19 12186761 rs7259845 A G 4366.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.7;SOR=1.015 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,119:119:99:1|1:12186732_A_G:4395,359,0 19 12186857 rs6511763 G C 4788.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.12;SOR=0.74 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,129:129:99:1|1:12186857_G_C:4817,387,0 19 12186921 rs8102258 T C 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.602;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.12;ReadPosRankSum=-1.853;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,79:159:99:0|1:12186857_G_C:3068,0,3099 19 12186922 rs8112094 G T 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.24;ReadPosRankSum=-2.139;SOR=0.854 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,79:158:99:0|1:12186857_G_C:3068,0,3099 19 12187210 rs6511764 A G 13504.8 PASS AC=2;AF=1;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.73;QD=33.02;SOR=1.011 GT:AD:DP:GQ:PL 1/1:0,409:409:99:13533,1224,0 19 12187861 rs10426017 T G 7073.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7102,682,0 19 12187907 rs55703333 G A 2344.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.161;SOR=0.75 GT:AD:DP:GQ:PL 0/1:135,99:234:99:2373,0,3345 19 12256912 rs7258368 C T 1818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.2;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=-1.171;SOR=0.857 GT:AD:DP:GQ:PL 0/1:129,86:215:99:1847,0,3141 19 12297369 rs8111785 G T 865.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.473;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.709;SOR=1 GT:AD:DP:GQ:PL 0/1:39,34:73:99:894,0,954 19 12383540 rs56056044 G C 2442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.047;SOR=0.687 GT:AD:DP:GQ:PL 0/1:103,92:195:99:2471,0,2846 19 12384580 rs11879168 T C 2533.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.797;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.85;SOR=0.839 GT:AD:DP:GQ:PL 0/1:116,101:217:99:2562,0,2947 19 12502457 rs4804669 A G 8939.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.8;QD=30.72;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8968,873,0 19 12502787 rs12974755 G A 3573.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.906;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=4.012;MLEAC=1;MLEAF=0.5;MQ=59.54;MQRankSum=-1.794;QD=13.09;ReadPosRankSum=0.733;SOR=0.919 GT:AD:DP:GQ:PL 0/1:141,132:273:99:3602,0,3566 19 12541532 rs10422063 C A 5988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.82;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=0.81;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.098;QD=17.21;ReadPosRankSum=1.458;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 0/1:186,162:348:99:0|1:12541532_C_A:6017,0,9450 19 12541547 rs10402252 T G 6024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.75;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.075;QD=17.98;ReadPosRankSum=-0.558;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 0/1:173,162:335:99:0|1:12541532_C_A:6053,0,9179 19 12542772 rs1134389 C T 1599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.418;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.5;MQ=51.52;MQRankSum=0.882;QD=9.14;ReadPosRankSum=0.699;SOR=0.88 GT:AD:DP:GQ:PL 0/1:109,66:175:99:1628,0,3294 19 12551715 rs11881297 A C 3914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.339;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-1.163;SOR=0.756 GT:AD:DP:GQ:PL 0/1:146,151:297:99:3943,0,3528 19 12576049 rs7259240 G A 1847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.768;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=1.254;SOR=0.658 GT:AD:DP:GQ:PL 0/1:117,80:197:99:1876,0,2800 19 12692001 rs3745651 G A 5466.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5495,541,0 19 12772090 rs1133330 C T 972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.72;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-0.5;SOR=0.671 GT:AD:DP:GQ:PL 0/1:58,44:102:99:1001,0,1402 19 12772165 rs1054487 G A 948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=1.356;SOR=0.405 GT:AD:DP:GQ:PL 0/1:49,42:91:99:977,0,1238 19 12774208 rs1054486 G C 2402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.567;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=-2.444;SOR=0.77 GT:AD:DP:GQ:PL 0/1:106,106:212:99:2431,0,2711 19 12863429 rs79300835 G A 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.496;SOR=0.677 GT:AD:DP:GQ:PL 0/1:125,100:225:99:2110,0,3111 19 12958697 rs2290688 T C 2850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.873;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.742;SOR=0.838 GT:AD:DP:GQ:PL 0/1:99,118:217:99:2879,0,2180 19 12963143 rs1078264 T C 3411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.691;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.34;SOR=0.858 GT:AD:DP:GQ:PL 0/1:121,146:267:99:3440,0,2986 19 12985576 rs11085822 A G 8681.77 PASS AC=2;AF=1;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8710,851,0 19 12989560 rs2293682 G A 7324.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,253:253:99:7353,756,0 19 12996740 rs2072597 A G 7049.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.64;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,216:216:99:7078,649,0 19 12998102 rs79334031 C T 2579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.975;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.322;SOR=0.769 GT:AD:DP:GQ:PL 0/1:108,105:215:99:2608,0,2731 19 13039284 rs2293683 A G 6394.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.5;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6423,609,0 19 13084333 rs45513495 G A 4227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0;DB;DP=356;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.062;SOR=0.543 GT:AD:DP:GQ:PL 0/1:181,174:355:99:4256,0,4609 19 13318672 rs370146696 CCTG C 485.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.53;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=2.605;QD=2.25;ReadPosRankSum=-1.79;SOR=0.593 GT:AD:DP:GQ:PL 0/1:188,28:216:99:523,0,7103 19 13319693 rs16051 A G 4908.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.312;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=11.477;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.05;ReadPosRankSum=0.074;SOR=4.06 GT:AD:DP:GQ:PL 1/1:5,164:169:99:4937,316,0 19 13387904 rs16030 A G 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.392;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.118;QD=10.76;ReadPosRankSum=-0.324;SOR=0.776 GT:AD:DP:GQ:PL 0/1:58,48:106:99:1169,0,1341 19 13411482 rs16018 G A 417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.63;ReadPosRankSum=0.95;SOR=0.801 GT:AD:DP:GQ:PL 0/1:41,22:63:99:446,0,945 19 13445208 rs2248069 C T 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.751;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.22;SOR=0.541 GT:AD:DP:GQ:PL 0/1:25,33:58:99:630,0,585 19 13868669 rs6511886 G A 2609.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.68;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2638,272,0 19 13875539 . AGCGGGGCGGCGGGGCGGCGGGGCGGCGGGGCGGCGGGGCG A 4656.73 PASS AC=2;AF=1;AN=2;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.64;QD=44.35;SOR=2.992 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,105:105:99:1|1:13875539_AGCGGGGCGGCGGGGCGGCGGGGCGGCGGGGCGGCGGGGCG_A:4694,347,0 19 13879622 rs346152 T C 3122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.238;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=4.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=-1.448;SOR=0.991 GT:AD:DP:GQ:PL 0/1:101,117:218:99:3151,0,2412 19 13883099 rs1469071 A G 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.371;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=6.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.962;SOR=1.3 GT:AD:DP:GQ:PL 0/1:78,59:137:99:1708,0,1934 19 13885309 rs1128749 C T 1970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.393;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-1.171;SOR=0.505 GT:AD:DP:GQ:PL 0/1:88,82:170:99:1999,0,2654 19 13885484 rs10104 A G 3660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.54;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=1.024;SOR=0.707 GT:AD:DP:GQ:PL 0/1:171,144:315:99:3689,0,4115 19 13910539 rs28480458 G A 1673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.408;SOR=0.949 GT:AD:DP:GQ:PL 0/1:88,71:159:99:1702,0,2210 19 13988416 rs2016163 A G 4384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.584;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.57;ReadPosRankSum=-0.903;SOR=0.781 GT:AD:DP:GQ:PL 0/1:136,165:301:99:4413,0,3176 19 14000170 rs3803892 T C 3340.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=0.138;SOR=0.725 GT:AD:DP:GQ:PL 0/1:139,131:270:99:3369,0,3622 19 14000400 rs3803891 A G 3568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.7;ReadPosRankSum=1.179;SOR=0.682 GT:AD:DP:GQ:PL 0/1:154,151:305:99:3597,0,3916 19 14000870 rs2305775 C T 3382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.258;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-0.231;SOR=0.565 GT:AD:DP:GQ:PL 0/1:179,146:325:99:3411,0,4743 19 14015711 rs6511898 C A 814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=0.065;SOR=0.845 GT:AD:DP:GQ:PL 0/1:42,38:80:99:843,0,998 19 14030689 rs10410239 T C 1843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.158;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=0.223;SOR=0.824 GT:AD:DP:GQ:PL 0/1:114,87:201:99:1872,0,2648 19 14038791 rs2305777 C T 1579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.368;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.659;SOR=0.669 GT:AD:DP:GQ:PL 0/1:95,67:162:99:1608,0,2356 19 14065488 rs1056143 A G 2361.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.765;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.321;SOR=0.598 GT:AD:DP:GQ:PL 0/1:92,89:181:99:2390,0,2186 19 14067171 rs118005906 G A 2936.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=5.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.976;SOR=0.971 GT:AD:DP:GQ:PL 0/1:145,124:269:99:2965,0,3866 19 14070706 rs141180609 A AGGTGGGCCCAGGGCGGGCAG 1438.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.958;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=14.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-2.043;SOR=2.584 GT:AD:DP:GQ:PL 0/1:91,37:128:99:1476,0,3675 19 14083761 rs2305780 T C 3157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.852;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=5.207;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.666;SOR=0.71 GT:AD:DP:GQ:PL 0/1:117,122:239:99:3186,0,2747 19 14139004 rs1982632 A G 2304.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.55;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2333,234,0 19 14141666 rs78161395 G T 1365.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.67;ReadPosRankSum=0.656;SOR=0.638 GT:AD:DP:GQ:PL 0/1:109,69:178:99:1394,0,2553 19 14153293 rs35026308 T C 2109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.339;SOR=0.579 GT:AD:DP:GQ:PL 0/1:78,93:171:99:2138,0,1850 19 14157331 rs149202847 C T 2240.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=3.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.013;SOR=0.944 GT:AD:DP:GQ:PL 0/1:102,97:199:99:2269,0,2513 19 14162676 rs2306190 A C 2258.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.27;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2287,210,0 19 14165278 rs56202530 G A 3431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=1.987;SOR=0.623 GT:AD:DP:GQ:PL 0/1:143,145:288:99:3460,0,3565 19 14231325 rs8102267 C G 4477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.22;ReadPosRankSum=-1.002;SOR=0.841 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,114:233:99:0|1:14231325_C_G:4506,0,5593 19 14231330 rs8102698 A G 4680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=4.274;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.87;ReadPosRankSum=-1.862;SOR=0.848 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,126:248:99:0|1:14231325_C_G:4709,0,5623 19 14268685 rs76576638 C T 1735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.18;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=6.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=0.962;SOR=0.464 GT:AD:DP:GQ:PL 0/1:86,74:160:99:1764,0,2324 19 14515368 rs45466292 C T 1348.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.43;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.743;SOR=0.871 GT:AD:DP:GQ:PL 0/1:76,57:133:99:1377,0,1985 19 14518044 rs117878245 G C 1869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.295;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=2.27;SOR=0.976 GT:AD:DP:GQ:PL 0/1:70,78:148:99:1898,0,1624 19 14523508 rs117106249 C T 2196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-1.741;SOR=0.82 GT:AD:DP:GQ:PL 0/1:71,92:163:99:2225,0,1711 19 14561722 rs8107892 A G 3908.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.92;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3937,415,0 19 14569199 rs150703202 AC A 1288.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.41;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.68;ReadPosRankSum=0.226;SOR=0.98 GT:AD:DP:GQ:PL 0/1:28,41:69:99:1326,0,831 19 14580635 rs74889788 G A 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.174;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.16;ReadPosRankSum=-0.735;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,38:79:99:0|1:14580635_G_A:1463,0,3471 19 14580638 rs78858120 T C 1434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.893;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.5;ReadPosRankSum=-0.278;SOR=1.04 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,38:82:99:0|1:14580635_G_A:1463,0,3471 19 14581063 rs1042728 A G 2143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.07;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=0.566;SOR=0.741 GT:AD:DP:GQ:PL 0/1:106,94:200:99:2172,0,2566 19 14590279 rs45458894 G C 853.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.83;ReadPosRankSum=0.673;SOR=0.617 GT:AD:DP:GQ:PL 0/1:64,45:109:99:882,0,1481 19 14629150 rs3962158 G A 2149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.999;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=1.063;SOR=0.447 GT:AD:DP:GQ:PL 0/1:77,84:161:99:2178,0,2155 19 14629171 rs34966794 C T 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.068;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.322;SOR=1.037 GT:AD:DP:GQ:PL 0/1:65,47:112:99:1236,0,1782 19 14676578 rs61732092 C T 3463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=4.666;MLEAC=1;MLEAF=0.5;MQ=57.99;MQRankSum=-0.604;QD=12.24;ReadPosRankSum=-0.998;SOR=0.589 GT:AD:DP:GQ:PL 0/1:137,146:283:99:3492,0,3551 19 14682804 rs9543 G C 4399.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=1.264 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4428,453,0 19 14694175 rs34295949 T TGGA 2103.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=2.58;MLEAC=1;MLEAF=0.5;MQ=45.75;MQRankSum=-1.392;QD=20.42;ReadPosRankSum=0.132;SOR=0.452 GT:AD:DP:GQ:PL 0/1:50,53:103:99:2141,0,1940 19 14698416 rs138728953 C A 873.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.1;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.5;MQ=42.73;MQRankSum=1.012;QD=14.09;ReadPosRankSum=-0.324;SOR=0.343 GT:AD:DP:GQ:PL 0/1:31,31:62:99:902,0,900 19 14705499 rs34335847 G A 3542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.428;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.09;ReadPosRankSum=0.479;SOR=0.485 GT:AD:DP:GQ:PGT:PID:PL 0/1:76,92:168:99:0|1:14705499_G_A:3571,0,3450 19 14705509 rs35049360 T C 3507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.145;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.13;ReadPosRankSum=0.501;SOR=0.633 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,92:166:99:0|1:14705499_G_A:3536,0,3360 19 14705574 rs78269670 T C 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.539;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.838;SOR=0.823 GT:AD:DP:GQ:PL 0/1:80,71:151:99:1734,0,1941 19 14717791 rs10409868 A G 706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.613;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.83;ReadPosRankSum=-0.404;SOR=0.815 GT:AD:DP:GQ:PL 0/1:48,32:80:99:735,0,1189 19 14721019 rs6511944 C T 4047.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4076,399,0 19 14752325 rs8102646 C T 4021.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.934;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.99;MQRankSum=-8.076;QD=11.66;ReadPosRankSum=-2.108;SOR=0.682 GT:AD:DP:GQ:PL 0/1:177,168:345:99:4050,0,3945 19 14758168 rs34226397 G A 747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=4.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.598;SOR=1.328 GT:AD:DP:GQ:PL 0/1:31,34:65:99:776,0,778 19 14769339 rs4606855 C G 999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.279;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=0.955;SOR=0.64 GT:AD:DP:GQ:PL 0/1:61,47:108:99:1028,0,1248 19 14817548 rs6511961 T A 2069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=0.313;SOR=0.459 GT:AD:DP:GQ:PL 0/1:62,88:150:99:2098,0,1499 19 14857791 rs34186967 T TA 3222.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=4.698;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.02;ReadPosRankSum=0.558;SOR=1.423 GT:AD:DP:GQ:PL 1/1:1,114:118:99:3260,327,0 19 14862430 rs2524383 C G 5645.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5674,581,0 19 14877043 rs2074892 C T 2211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.5;MQ=58.64;MQRankSum=-1.662;QD=9.92;ReadPosRankSum=0.295;SOR=0.918 GT:AD:DP:GQ:PL 0/1:124,99:223:99:2240,0,3114 19 14877799 rs12976472 G C 209.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.677;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=7.6;MLEAC=1;MLEAF=0.5;MQ=58.95;MQRankSum=-8.703;QD=1.57;ReadPosRankSum=-3.076;SOR=1.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:119,15:134:99:0|1:14877799_G_C:238,0,13309 19 14877806 rs12976475 G A 143.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.426;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=11.3;MLEAC=1;MLEAF=0.5;MQ=59.07;MQRankSum=-9.107;QD=1.11;ReadPosRankSum=-1.836;SOR=1.948 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,12:130:99:0|1:14877799_G_C:172,0,13607 19 14910210 rs73004304 C G 6626.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.13;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6655,600,0 19 14910321 rs16979912 A G 5367.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.03;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5396,519,0 19 14910438 rs10415312 C T 5541.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5570,548,0 19 14910573 rs10415562 C T 7848.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7877,788,0 19 14910654 rs17230134 T C 6694.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6723,655,0 19 14951898 rs3752195 G T 5459.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5488,546,0 19 14952706 . C CAG 245.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.68;ReadPosRankSum=0.844;SOR=0.643 GT:AD:DP:GQ:PL 0/1:18,14:40:99:283,0,521 19 14991963 rs10404119 C A 7889.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.1;QD=29.33;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,269:269:99:7918,806,0 19 14992031 rs10405129 A G 8547.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.91;QD=29.58;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8576,866,0 19 14992042 rs10405136 A G 12193.8 PASS AC=2;AF=1;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.78;QD=44.67;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,273:273:99:1|1:14992042_A_G:12222,822,0 19 14992045 rs10404335 C T 12168.8 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.77;QD=44.74;SOR=0.902 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,272:272:99:1|1:14992042_A_G:12197,819,0 19 14992178 rs149867911 CTATTTATTTATT C 2018.73 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.62;QD=43.89;SOR=3.08 GT:AD:DP:GQ:PL 1/1:0,46:48:99:2056,145,0 19 15052983 rs3044711 T TATC 6257.73 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.02;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:6295,421,0 19 15083693 rs3746295 C A 4679.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4708,477,0 19 15124474 rs11085935 C T 835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=-0.135;SOR=0.755 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,34:64:99:0|1:15124453_C_A:864,0,777 19 15131261 rs4405675 C T 1038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.77;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=0.268;SOR=0.781 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1067,0,1154 19 15131330 rs35352238 G A 2197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.203;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=5.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.265;SOR=1.064 GT:AD:DP:GQ:PL 0/1:115,95:210:99:2226,0,2712 19 15133762 rs8111625 G C 6832.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.96;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6861,573,0 19 15133787 rs10424547 C A 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.698;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=1.012;SOR=0.607 GT:AD:DP:GQ:PL 0/1:108,107:215:99:2415,0,2727 19 15133926 rs8112667 C A 1907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=0.232;SOR=0.609 GT:AD:DP:GQ:PL 0/1:84,82:166:99:1936,0,2091 19 15198263 rs8105277 A G 5223.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5252,501,0 19 15198292 rs8104843 C G 5314.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5343,540,0 19 15198507 rs8108721 T C 6352.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.07;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.01;ReadPosRankSum=2.274;SOR=0.246 GT:AD:DP:GQ:PL 1/1:1,218:219:99:6381,623,0 19 15198631 rs8105737 A C 4759.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.76;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4788,423,0 19 15198764 rs12975625 T C 4311.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4340,423,0 19 15226970 rs2074262 G A 2893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.214;SOR=0.853 GT:AD:DP:GQ:PL 0/1:109,121:230:99:2922,0,2658 19 15227030 rs2074263 G A 6700.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6729,668,0 19 15271771 rs1044009 G A 6383.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6412,614,0 19 15273381 rs4809030 A G 1956.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=0.966 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1985,186,0 19 15276919 rs2074619 G A 3924.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.13;SOR=1.46 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,91:91:99:1|1:15276919_G_A:3953,273,0 19 15278057 rs1548555 A G 4827.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.19;SOR=1.097 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4856,450,0 19 15285052 rs1044006 T C 6043.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6072,597,0 19 15292437 rs1043997 T C 8358.77 PASS AC=2;AF=1;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8387,864,0 19 15295134 rs1043996 G A 1391.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.126;SOR=0.698 GT:AD:DP:GQ:PL 0/1:69,59:128:99:1420,0,1743 19 15300069 rs10423702 T C 7863.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.63;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7892,724,0 19 15302844 rs1043994 T C 6891.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6920,630,0 19 15303225 rs3815188 G A 2438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.267;SOR=0.778 GT:AD:DP:GQ:PL 0/1:141,105:246:99:2467,0,3615 19 15338677 rs148609218 T C 2676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.996;SOR=0.781 GT:AD:DP:GQ:PL 0/1:118,117:235:99:2705,0,2866 19 15508362 rs2058322 G C 3211.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.54;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3240,279,0 19 15565646 rs56209154 G A 2784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.783;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.255;SOR=0.638 GT:AD:DP:GQ:PL 0/1:91,114:205:99:2813,0,2252 19 15582863 rs34440547 C T 6706.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.059 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6735,663,0 19 15586672 rs892145 A T 8357.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,279:279:99:8386,835,0 19 15587185 rs733731 C T 6531.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6560,657,0 19 15587345 rs3813135 T C 5858.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5887,582,0 19 15651539 rs201608860 GCC G 5794.73 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=44.23;SOR=2.712 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,131:131:99:1|1:15651539_GCC_G:5832,395,0 19 15651548 rs372183725 AAT A 5764.73 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.12;SOR=2.871 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,125:125:99:1|1:15651539_GCC_G:5802,388,0 19 15726487 rs4646523 G T 4594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0;DB;DP=379;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=2.038;SOR=0.69 GT:AD:DP:GQ:PL 0/1:176,203:379:99:4623,0,4274 19 15730498 rs55848814 G GC 8687.73 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=39.85;SOR=1.462 GT:AD:DP:GQ:PL 1/1:0,218:218:99:8725,656,0 19 15739597 rs2056822 A C 6102.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=0.969 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6131,582,0 19 15739992 rs2239366 T C 7941.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=1.679 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7970,726,0 19 15757927 rs1290626 T C 5200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.059;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=0.364;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0;QD=13.1;ReadPosRankSum=-1.492;SOR=0.665 GT:AD:DP:GQ:PL 0/1:190,207:397:99:5229,0,4509 19 15763721 rs1805042 G A 4544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.255;ClippingRankSum=0;DB;DP=423;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.606;QD=10.77;ReadPosRankSum=0.214;SOR=0.68 GT:AD:DP:GQ:PL 0/1:214,208:422:99:4573,0,5503 19 15769379 rs4646515 G C 3726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.29;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=4.723;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.029;QD=13.12;ReadPosRankSum=-0.125;SOR=0.972 GT:AD:DP:GQ:PL 0/1:147,137:284:99:3755,0,3922 19 15769529 rs4646518 G T 3599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.37;ReadPosRankSum=-1.059;SOR=0.695 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,93:196:99:0|1:15769529_G_T:3628,0,4065 19 15769530 rs4646519 C T 3599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.287;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.09;ReadPosRankSum=-1.526;SOR=0.714 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,95:199:99:0|1:15769529_G_T:3628,0,4065 19 15769625 rs1915390 A G 3156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.228;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.006;SOR=0.597 GT:AD:DP:GQ:PL 0/1:136,135:271:99:3185,0,3222 19 15770012 rs56167713 T C 392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.554;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=14.698;MLEAC=1;MLEAF=0.5;MQ=55.65;MQRankSum=-11.577;QD=2.65;ReadPosRankSum=-5.369;SOR=2.267 GT:AD:DP:GQ:PL 0/1:120,28:148:99:421,0,5123 19 15770018 rs68106141 T C 5333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.31;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=9.584;MLEAC=1;MLEAF=0.5;MQ=55.28;MQRankSum=12.68;QD=30.65;ReadPosRankSum=6.433;SOR=0.226 GT:AD:DP:GQ:PGT:PID:PL 0/1:42,132:174:99:0|1:15770018_T_C:5362,0,1618 19 15770020 rs2460819 C T 5330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.173;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.44;MLEAC=1;MLEAF=0.5;MQ=55;MQRankSum=12.871;QD=29.78;ReadPosRankSum=7.063;SOR=0.433 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,132:179:99:0|1:15770018_T_C:5359,0,1647 19 15770027 rs55876862 A T 1548.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.369;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=7.636;MLEAC=1;MLEAF=0.5;MQ=55.33;MQRankSum=-15.004;QD=6.17;ReadPosRankSum=-4.911;SOR=1.219 GT:AD:DP:GQ:PL 0/1:176,75:251:99:1577,0,6533 19 15793235 rs2285888 T C 6464.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.16;QD=31.69;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6493,612,0 19 15807305 rs688755 T C 8691.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8720,878,0 19 15807830 rs593421 T C 10074.8 PASS AC=2;AF=1;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,353:353:99:10103,1059,0 19 15807884 rs593818 A G 7625.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7654,750,0 19 15838972 rs4569397 T A 12803.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0;DB;DP=402;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.62;MQRankSum=3.988;QD=31.93;ReadPosRankSum=0.732;SOR=0.508 GT:AD:DP:GQ:PL 1/1:1,400:401:99:12832,1177,0 19 15839081 rs2067083 C T 16919.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.94;ClippingRankSum=0;DB;DP=588;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.54;MQRankSum=6.427;QD=28.78;ReadPosRankSum=-1.233;SOR=0.735 GT:AD:DP:GQ:PL 1/1:8,580:588:99:16948,1564,0 19 15852223 rs1966357 A C 3122.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3151,300,0 19 15852363 rs11670007 G A 6425.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=29.48;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6454,654,0 19 15852544 rs11670326 C T 7162.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7191,707,0 19 15853150 rs16980824 C T 3988.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=1.108 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4017,421,0 19 15905661 rs67455341 C A 3746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.92;MQRankSum=-0.632;QD=12.83;ReadPosRankSum=0.925;SOR=0.67 GT:AD:DP:GQ:PL 0/1:138,154:292:99:3775,0,3618 19 15918380 rs28426969 C T 5309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0;DB;DP=471;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=-1.319;QD=11.3;ReadPosRankSum=0.324;SOR=0.867 GT:AD:DP:GQ:PL 0/1:251,219:470:99:5338,0,6315 19 15918647 rs4081570 G T 1325.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.487;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.5;MQ=55.61;MQRankSum=-16.005;QD=3.95;ReadPosRankSum=-4.445;SOR=0.555 GT:AD:DP:GQ:PL 0/1:266,70:336:99:1354,0,6691 19 15989589 rs3093200 G T 4798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0;DB;DP=402;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.03;MQRankSum=-5.395;QD=11.94;ReadPosRankSum=-0.193;SOR=0.656 GT:AD:DP:GQ:PL 0/1:206,196:402:99:4827,0,5218 19 15989730 rs4020346 T C 58.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.302;ClippingRankSum=0;DB;DP=446;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=58.17;MQRankSum=-16.276;QD=0.13;ReadPosRankSum=1.752;SOR=0.44 GT:AD:DP:GQ:PL 0/1:391,54:445:87:87,0,10609 19 15997136 rs3093159 A AC 888.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=1.278;QD=12.17;ReadPosRankSum=0.161;SOR=0.527 GT:AD:DP:GQ:PL 0/1:32,41:73:99:926,0,741 19 16024538 rs1060467 A G 4915.77 SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=5.598 GT:AD:DP:GQ:PL 1/1:0,172:172:99:4944,496,0 19 16024662 rs1064796 G C 11208.8 PASS AC=2;AF=1;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,373:373:99:11237,1117,0 19 16024739 rs2072269 A G 6638.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=1.374 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6667,628,0 19 16025176 rs1060463 C T 5135.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5164,525,0 19 16034714 rs8104361 A G 14136.8 PASS AC=2;AF=1;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.954 GT:AD:DP:GQ:PL 1/1:0,480:480:99:14165,1438,0 19 16040292 rs3765070 A G 6833.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6862,656,0 19 16045141 rs2305801 T C 10849.8 PASS AC=2;AF=1;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,360:360:99:10878,1079,0 19 16259623 rs8103852 C T 2053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.265;SOR=0.766 GT:AD:DP:GQ:PL 0/1:70,90:160:99:2082,0,1565 19 16265241 rs36088948 C T 920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.451;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=2.007;SOR=0.788 GT:AD:DP:GQ:PL 0/1:54,41:95:99:949,0,1547 19 16268207 rs5827321 TA T 6014.73 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=28.24;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6052,640,0 19 16275515 rs6512086 A G 3692.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.56;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3721,351,0 19 16275655 rs6512087 C T 4147.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=1.001 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4176,417,0 19 16301312 rs206231 A G 1547.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1576,150,0 19 16339030 rs62116347 C T 1443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.386;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=2.212;SOR=0.697 GT:AD:DP:GQ:PL 0/1:78,63:141:99:1472,0,1905 19 16339715 rs3752797 C T 7492.77 PASS AC=2;AF=1;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7521,748,0 19 16345099 rs897774 T C 4931.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4960,474,0 19 16435717 rs8106384 T C 3993.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.049 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4022,405,0 19 16436262 rs3745318 T C 3378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=3.156;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=2.035;SOR=0.757 GT:AD:DP:GQ:PL 0/1:153,140:293:99:3407,0,3810 19 16547778 rs33914440 C T 673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.67;ReadPosRankSum=-0.168;SOR=0.728 GT:AD:DP:GQ:PL 0/1:65,36:101:99:702,0,1672 19 16591464 rs9305079 G A 3405.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3434,351,0 19 16593318 rs118131979 C T 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.48;MQRankSum=-0.242;QD=10.88;ReadPosRankSum=-0.291;SOR=0.67 GT:AD:DP:GQ:PL 0/1:82,74:156:99:1726,0,2016 19 16601194 rs3810198 C T 3737.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.495 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3766,362,0 19 16612368 rs201607227 AT A 102.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.615;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=2.462;QD=1.09;ReadPosRankSum=-0.505;SOR=0.522 GT:AD:DP:GQ:PL 0/1:77,17:103:99:140,0,1797 19 16633950 rs1043481 T C 8338.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8367,838,0 19 16640639 rs183319111 G A 3771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-2.952;SOR=0.749 GT:AD:DP:GQ:PL 0/1:152,165:317:99:3800,0,3535 19 16666101 rs2287869 G C 7814.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7843,770,0 19 16842052 rs8107776 G T 1903.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1932,183,0 19 16855265 rs812847 A G 4234.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.81;ReadPosRankSum=-0.626;SOR=0.258 GT:AD:DP:GQ:PL 1/1:1,146:147:99:4263,399,0 19 16860105 rs706764 G A 4365.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.043;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.5;ReadPosRankSum=-0.253;SOR=0.807 GT:AD:DP:GQ:PL 1/1:2,146:148:99:4394,394,0 19 16860882 rs61746179 G A 2563.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.204;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=1.165;SOR=0.796 GT:AD:DP:GQ:PL 0/1:106,103:209:99:2592,0,2582 19 16872940 rs773852 G A 3174.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=1.115 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3203,315,0 19 16899838 rs2608737 A T 3459.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=1.258 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3488,350,0 19 16976286 rs773911 A G 6223.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.49;SOR=1.118 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,166:166:99:1|1:16976286_A_G:6252,505,0 19 16976289 rs2303091 T C 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.497;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,84:169:99:0|1:16976286_A_G:1931,0,1978 19 16988456 rs2303090 A G 3103.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=1.158 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3132,321,0 19 17025311 rs45485597 G A 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.539;SOR=0.737 GT:AD:DP:GQ:PL 0/1:67,64:131:99:1421,0,1821 19 17088299 rs1824152 T C 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.041;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.86;MQRankSum=-6.326;QD=10.65;ReadPosRankSum=-1.137;SOR=0.671 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1434,0,1573 19 17088319 rs3745335 G T 1453.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.709;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.88;MQRankSum=-5.99;QD=10.93;ReadPosRankSum=-1.702;SOR=0.682 GT:AD:DP:GQ:PL 0/1:69,64:133:99:1482,0,1493 19 17091368 rs8103646 T G 2632.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.844;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=1.165;QD=13.93;ReadPosRankSum=1.298;SOR=0.559 GT:AD:DP:GQ:PL 0/1:81,108:189:99:2661,0,1800 19 17108053 rs12974937 C T 1105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=3.99;MLEAC=1;MLEAF=0.5;MQ=49.09;MQRankSum=0.828;QD=12.29;ReadPosRankSum=-0.389;SOR=0.704 GT:AD:DP:GQ:PL 0/1:46,44:90:99:1134,0,1204 19 17111297 rs4808551 A G 1264.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.62;QD=29.41;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1293,129,0 19 17113147 rs3745345 A G 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.051;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=-0.509;SOR=0.46 GT:AD:DP:GQ:PL 0/1:43,43:86:99:984,0,978 19 17273893 rs7256689 G T 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=-0.024;SOR=0.779 GT:AD:DP:GQ:PL 0/1:79,76:155:99:1777,0,2062 19 17330060 rs414528 T C 7886.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,271:271:99:7915,810,0 19 17392894 rs8100241 G A 8765.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8794,827,0 19 17393015 rs1864116 C T 9003.77 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=29.23;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9032,918,0 19 17393504 rs1864113 G C 5476.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5505,564,0 19 17393530 rs8108174 T A 5626.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5655,582,0 19 17394124 rs2363956 T G 9654.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,312:312:99:9683,936,0 19 17394504 rs891017 A C 8396.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8425,813,0 19 17395003 rs11086065 A G 6991.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.65;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7020,731,0 19 17395055 rs11882562 C G 6715.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6744,672,0 19 17396549 rs751599 T C 7233.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7262,717,0 19 17412366 rs11086066 G A 3929.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.422;SOR=0.614 GT:AD:DP:GQ:PL 0/1:201,171:372:99:3958,0,4960 19 17412399 rs11086067 G A 3706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.355;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.395;SOR=0.582 GT:AD:DP:GQ:PL 0/1:168,161:329:99:3735,0,4464 19 17424932 rs2288463 A G 1773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.15;ReadPosRankSum=-0.965;SOR=0.69 GT:AD:DP:GQ:PL 0/1:67,79:146:99:1802,0,1487 19 17434587 rs12977101 T G 3525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.288;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=6.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.864;SOR=0.802 GT:AD:DP:GQ:PL 0/1:151,152:303:99:3554,0,3461 19 17435884 rs755123 T C 7371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.61;ReadPosRankSum=1.614;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,186:326:99:0|1:17435884_T_C:7400,0,7569 19 17435887 rs56286266 C T 7338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.099;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.51;ReadPosRankSum=1.348;SOR=0.803 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,188:326:99:0|1:17435884_T_C:7367,0,7637 19 17438642 rs8102944 A G 3061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.628;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=5.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.03;ReadPosRankSum=-0.188;SOR=1.074 GT:AD:DP:GQ:PL 0/1:79,112:191:99:3090,0,1786 19 17448961 rs1864112 A C 3284.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.086;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.673;SOR=0.712 GT:AD:DP:GQ:PL 0/1:113,131:244:99:3313,0,2731 19 17450016 rs3810206 T C 3738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.272;SOR=0.806 GT:AD:DP:GQ:PL 0/1:143,157:300:99:3767,0,3355 19 17514646 rs113321277 T TGGG 8115.73 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=44.59;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,182:182:99:8153,551,0 19 17516400 rs111617488 A AGCTGAAAG 3726.73 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.5;QD=44.37;SOR=1.845 GT:AD:DP:GQ:PL 1/1:0,84:84:99:3764,256,0 19 17533126 rs2303678 A G 5449.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5478,557,0 19 17547292 rs4808641 A G 5959.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5988,591,0 19 17556054 rs3810209 A G 5021.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=1.066 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5050,501,0 19 17559076 rs4808643 T C 7078.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,222:222:99:7107,666,0 19 17622614 rs11086075 C T 3127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.783;SOR=0.742 GT:AD:DP:GQ:PL 0/1:126,123:249:99:3156,0,3461 19 17628587 rs6743 A G 5643.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5672,584,0 19 17641667 rs74336438 G A 2476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-0.435;SOR=0.75 GT:AD:DP:GQ:PL 0/1:96,107:203:99:2505,0,2335 19 17643065 rs12984143 T C 8366.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8395,830,0 19 17648350 rs8107859 T C 5167.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5196,513,0 19 17650229 rs114207587 C A 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.219;SOR=0.827 GT:AD:DP:GQ:PL 0/1:84,62:146:99:1550,0,2398 19 17651370 rs11878663 A G 7262.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=1.188 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7291,716,0 19 17654182 rs76814516 G A 1610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.317;SOR=0.914 GT:AD:DP:GQ:PL 0/1:57,69:126:99:1639,0,1314 19 17660300 rs11666267 G A 1102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.093;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.119;SOR=0.9 GT:AD:DP:GQ:PL 0/1:58,48:106:99:1131,0,1361 19 17666636 rs7259723 C T 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.26;ReadPosRankSum=0.377;SOR=0.698 GT:AD:DP:GQ:PL 0/1:121,79:200:99:1881,0,3342 19 17716896 rs3746198 G T 3090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.079;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.633;SOR=0.633 GT:AD:DP:GQ:PL 0/1:133,124:257:99:3119,0,3049 19 17728502 rs2287851 T C 2901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.98;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=4.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=1.014;SOR=0.459 GT:AD:DP:GQ:PL 0/1:108,122:230:99:2930,0,2587 19 17728572 rs56174023 C T 2890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.943;SOR=0.658 GT:AD:DP:GQ:PL 0/1:137,126:263:99:2919,0,3419 19 17729787 rs56257446 T G 1068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.32;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.071;SOR=0.961 GT:AD:DP:GQ:PL 0/1:50,44:94:99:1097,0,1277 19 17741047 rs10413821 A G 3662.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.557;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=1.131;SOR=0.754 GT:AD:DP:GQ:PL 0/1:139,150:289:99:3691,0,3159 19 17746947 rs4239634 A G 5019.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5048,512,0 19 17759289 rs73922174 G C 4246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.501;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-0.07;SOR=0.59 GT:AD:DP:GQ:PL 0/1:176,172:348:99:4275,0,4347 19 17766900 rs34752754 C T 8713.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8742,875,0 19 17777508 rs9305092 C G 4100.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.16;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4129,452,0 19 17837090 rs12975100 C T 10579.8 PASS AC=2;AF=1;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=0.843 GT:AD:DP:GQ:PL 1/1:0,342:342:99:10608,1025,0 19 17837512 rs12983721 G A 11129.8 PASS AC=2;AF=1;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,371:371:99:11158,1110,0 19 17889044 rs34062212 G A 1946.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1975,192,0 19 17892591 rs2042298 A G 3990.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4019,417,0 19 17918772 . A C 327.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.053;ClippingRankSum=0;DP=169;ExcessHet=3.0103;FS=254.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.06;ReadPosRankSum=-5.228;SOR=6.516 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,25:159:99:0|1:17918772_A_C:356,0,8396 19 17918776 . A C 305.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.225;ClippingRankSum=0;DP=167;ExcessHet=3.0103;FS=216.161;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.97;ReadPosRankSum=-4.704;SOR=6.089 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,20:155:99:0|1:17918772_A_C:334,0,8854 19 17918780 . G C 260.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.751;ClippingRankSum=0;DP=166;ExcessHet=3.0103;FS=168.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.67;ReadPosRankSum=-4.327;SOR=5.781 GT:AD:DP:GQ:PGT:PID:PL 0/1:139,17:156:99:0|1:17918772_A_C:289,0,9297 19 17918784 . A C 209.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.58;ClippingRankSum=0;DP=162;ExcessHet=3.0103;FS=134.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.38;ReadPosRankSum=-4.854;SOR=5.545 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,15:152:99:0|1:17918772_A_C:238,0,9272 19 17918785 . G C 206.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.812;ClippingRankSum=0;DP=160;ExcessHet=3.0103;FS=118.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.38;ReadPosRankSum=-4.588;SOR=5.278 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,13:150:99:0|1:17918772_A_C:235,0,9339 19 17918790 . G C 59.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.343;ClippingRankSum=0;DP=162;ExcessHet=3.0103;FS=84.021;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.39;ReadPosRankSum=-4.46;SOR=4.796 GT:AD:DP:GQ:PGT:PID:PL 0/1:142,10:152:88:0|1:17918772_A_C:88,0,10001 19 17919024 rs2240813 A T 3172.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.588;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=2.472;SOR=0.976 GT:AD:DP:GQ:PL 0/1:154,126:280:99:3201,0,3560 19 17922795 rs36686 G A 8910.77 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.22;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,305:305:99:8939,914,0 19 17932138 rs6523 T C 3325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.26;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=5.211;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.115;SOR=1.014 GT:AD:DP:GQ:PL 0/1:137,122:259:99:3354,0,3303 19 17932190 rs1047233 T C 4437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.237;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=3.51;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=1.208;SOR=0.884 GT:AD:DP:GQ:PL 0/1:170,171:341:99:4466,0,3800 19 17941294 rs2302603 T C 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.641;SOR=0.637 GT:AD:DP:GQ:PL 0/1:64,68:135:99:1512,0,1444 19 17946054 rs2072496 G A 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.384;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=6.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=-0.039;SOR=1.401 GT:AD:DP:GQ:PL 0/1:83,47:130:99:1252,0,2317 19 18047283 rs4808722 T G 2219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.207;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.231;SOR=0.765 GT:AD:DP:GQ:PL 0/1:99,89:188:99:2248,0,2358 19 18180413 rs401502 C G 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.343;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.6;ReadPosRankSum=0.784;SOR=0.79 GT:AD:DP:GQ:PL 0/1:107,70:177:99:1550,0,2506 19 18180451 rs375947 A G 1586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=-2.904;SOR=0.841 GT:AD:DP:GQ:PL 0/1:97,70:167:99:1615,0,2272 19 18186575 rs17852635 G A 619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.28;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.59;ReadPosRankSum=1.565;SOR=0.818 GT:AD:DP:GQ:PL 0/1:61,33:94:99:648,0,1573 19 18186618 rs11575934 T C 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.62;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.86;ReadPosRankSum=0.614;SOR=0.93 GT:AD:DP:GQ:PL 0/1:69,44:113:99:916,0,1640 19 18188408 rs11575926 C T 702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.213;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-1.795;SOR=0.826 GT:AD:DP:GQ:PL 0/1:34,32:66:99:731,0,767 19 18197635 rs436857 G A 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.22;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.029;SOR=0.653 GT:AD:DP:GQ:PL 0/1:113,106:219:99:2359,0,2598 19 18218444 rs62123561 A G 3785.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3814,398,0 19 18248146 rs541225 T C 5735.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5764,576,0 19 18252829 rs613339 A G 5953.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5982,582,0 19 18272190 rs2241088 A C 5432.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.16 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5461,537,0 19 18273047 rs1011320 T C 4334.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4363,416,0 19 18279638 rs273269 T C 6214.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6243,610,0 19 18284651 rs2241089 G T 2886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-1.176;SOR=0.748 GT:AD:DP:GQ:PL 0/1:152,135:287:99:2915,0,3519 19 18285944 rs11554159 G A 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.708;SOR=0.762 GT:AD:DP:GQ:PL 0/1:79,79:158:99:1892,0,2054 19 18288069 rs7125 A G 7023.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7052,714,0 19 18304700 rs874628 A G 2560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.505;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=1.531;SOR=0.84 GT:AD:DP:GQ:PL 0/1:104,101:205:99:2589,0,2540 19 18305578 rs16982263 G C 2347.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.432 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2376,225,0 19 18305824 rs2271881 C T 2807.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=2.377;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.53;SOR=0.541 GT:AD:DP:GQ:PL 0/1:96,113:209:99:2836,0,2414 19 18311199 rs1046565 A G 1268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.019;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.81;ReadPosRankSum=0.693;SOR=0.625 GT:AD:DP:GQ:PL 0/1:85,59:144:99:1297,0,2109 19 18322095 rs12611244 G A 2685.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2714,255,0 19 18329240 rs1042050 T C 5790.77 PASS AC=2;AF=1;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5819,573,0 19 18329784 rs2229228 C T 962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-2.458;SOR=0.676 GT:AD:DP:GQ:PL 0/1:41,47:88:99:991,0,889 19 18368810 rs999813 G T 4209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.72;ReadPosRankSum=-0.612;SOR=0.665 GT:AD:DP:GQ:PL 0/1:119,167:286:99:4238,0,2848 19 18375563 rs12608744 G A 3972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=1.714;SOR=0.749 GT:AD:DP:GQ:PL 0/1:161,151:312:99:4001,0,4259 19 18375659 rs12608843 C T 2860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.148;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.236;SOR=0.666 GT:AD:DP:GQ:PL 0/1:139,122:261:99:2889,0,3879 19 18376407 rs8110972 T A 2747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.935;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.815;SOR=0.538 GT:AD:DP:GQ:PL 0/1:115,109:224:99:2776,0,2825 19 18376522 rs2277922 T G 3068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.144;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.42;ReadPosRankSum=-1.031;SOR=0.617 GT:AD:DP:GQ:PL 0/1:125,122:247:99:3097,0,3170 19 18377274 rs3746186 A G 3333.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.7;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=-2.483;SOR=0.667 GT:AD:DP:GQ:PL 0/1:134,136:270:99:3362,0,3254 19 18377496 rs8104533 C G 3026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.984;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=1.704;SOR=0.668 GT:AD:DP:GQ:PL 0/1:156,116:272:99:3055,0,4050 19 18377647 rs8103906 G C 3940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.68;ReadPosRankSum=0.85;SOR=0.802 GT:AD:DP:GQ:PL 0/1:132,156:288:99:3969,0,3412 19 18378219 rs1469023 A G 3015.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=8.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.498;SOR=0.655 GT:AD:DP:GQ:PL 0/1:133,127:260:99:3044,0,3338 19 18423402 rs2232968 T C 3504.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3533,370,0 19 18497024 rs1059519 G C 3910.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.14;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3939,354,0 19 18497137 rs6413435 G A 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.855;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=0.045;SOR=0.676 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,76:178:99:0|1:18497137_G_A:1770,0,4024 19 18497141 rs1059369 T A 2532.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.86;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=0.256;SOR=0.686 GT:AD:DP:GQ:PGT:PID:PL 0/1:78,100:178:99:1|0:18497137_G_A:2561,0,2914 19 18499151 rs1059022 C T 1500.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.092;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=-1.85;SOR=0.767 GT:AD:DP:GQ:PL 0/1:49,57:106:99:1529,0,1271 19 18499238 rs1804826 G T 1448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=0.891;SOR=0.809 GT:AD:DP:GQ:PL 0/1:75,60:137:99:1477,0,1977 19 18502835 rs6512265 G A 6392.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.792 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6421,630,0 19 18544501 rs62122438 C T 6868.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=46.1;SOR=3.672 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,149:149:99:1|1:18544498_A_C:6897,475,0 19 18544505 rs2544724 G C 6758.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=43.33;SOR=3.116 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,156:156:99:1|1:18544498_A_C:6787,469,0 19 18650278 rs7247733 T C 5413.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.81;SOR=1.008 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5442,495,0 19 18679379 rs7648 C G 2272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.196;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=1.102;SOR=0.66 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2301,0,2323 19 18684563 rs2302055 C T 1174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.7;ReadPosRankSum=1.136;SOR=0.826 GT:AD:DP:GQ:PL 0/1:77,58:135:99:1203,0,1761 19 18685964 rs6554 G T 2060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.083;SOR=0.723 GT:AD:DP:GQ:PL 0/1:84,88:172:99:2089,0,2116 19 18707878 rs7247346 A C 2645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.346;QD=12.6;ReadPosRankSum=1.799;SOR=0.562 GT:AD:DP:GQ:PL 0/1:99,111:210:99:2674,0,2397 19 18726856 rs709679 T C 2465.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-2.351;SOR=0.767 GT:AD:DP:GQ:PL 0/1:110,110:220:99:2494,0,2459 19 18856650 . G C 2528.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.615;ClippingRankSum=0;DP=233;ExcessHet=3.0103;FS=2.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-1.732;SOR=0.513 GT:AD:DP:GQ:PL 0/1:126,105:231:99:2557,0,3023 19 18888150 rs78830644 C T 1794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.88;ReadPosRankSum=-0.217;SOR=0.8 GT:AD:DP:GQ:PL 0/1:117,85:202:99:1823,0,2875 19 18897440 rs61739916 T C 1126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.243;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1;QD=12.25;ReadPosRankSum=0.575;SOR=0.593 GT:AD:DP:GQ:PL 0/1:45,47:92:99:1155,0,991 19 18980172 rs4808863 G A 2803.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.887;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.467;SOR=0.777 GT:AD:DP:GQ:PL 0/1:107,128:235:99:2832,0,2395 19 18980213 rs4808864 A G 6078.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6107,615,0 19 19006666 rs3746263 G C 1449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.411;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.417;SOR=0.665 GT:AD:DP:GQ:PL 0/1:74,60:134:99:1478,0,1869 19 19011244 rs1127821 T C 1660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.185;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=-0.706;SOR=0.696 GT:AD:DP:GQ:PL 0/1:49,70:119:99:1689,0,1051 19 19023853 rs3177137 T C 1538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-2.437;SOR=0.811 GT:AD:DP:GQ:PL 0/1:71,71:142:99:1567,0,1645 19 19032637 rs2231997 T C 3305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=4.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.74;ReadPosRankSum=-0.103;SOR=0.793 GT:AD:DP:GQ:PL 0/1:85,125:210:99:3334,0,2115 19 19040312 rs1059240 G C 6809.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6838,663,0 19 19136541 rs4808907 C T 5002.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5031,462,0 19 19218861 rs376550651 A G 2186.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.776;SOR=0.538 GT:AD:DP:GQ:PL 0/1:79,92:171:99:2215,0,2120 19 19230868 rs756791 A G 9921.77 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,329:329:99:9950,985,0 19 19329924 rs2228603 C T 3871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.014;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.797;SOR=0.769 GT:AD:DP:GQ:PL 0/1:146,158:304:99:3900,0,3854 19 19369435 rs2074295 A G 4311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.6;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-1.372;SOR=0.807 GT:AD:DP:GQ:PL 0/1:148,176:324:99:4340,0,3313 19 19380996 rs2074300 G T 3114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.284;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.733;SOR=0.557 GT:AD:DP:GQ:PL 0/1:130,112:242:99:3143,0,3650 19 19387743 rs2074550 A C 3478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.62;ReadPosRankSum=0.504;SOR=0.849 GT:AD:DP:GQ:PL 0/1:106,132:238:99:3507,0,2752 19 19408164 rs2301785 G A 845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=3.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.133;SOR=0.322 GT:AD:DP:GQ:PL 0/1:35,33:68:99:874,0,1027 19 19431963 rs12460764 G T 2206.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.47;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.236;SOR=0.527 GT:AD:DP:GQ:PL 0/1:114,91:205:99:2235,0,3247 19 19446936 rs769267 G A 951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=-1.763;SOR=0.746 GT:AD:DP:GQ:PL 0/1:31,41:72:99:980,0,742 19 19449686 rs2074090 G T 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.985;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.233;SOR=0.653 GT:AD:DP:GQ:PL 0/1:57,58:115:99:1433,0,1360 19 19606634 rs1047361 G A 1473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.37;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.18;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.931;SOR=0.502 GT:AD:DP:GQ:PL 0/1:71,65:136:99:1502,0,1703 19 19625547 rs7250893 A G 4456.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.872;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.22;ReadPosRankSum=0.171;SOR=0.657 GT:AD:DP:GQ:PL 0/1:159,178:337:99:4485,0,3834 19 19646272 rs2304098 T C 3040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.073;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.702;SOR=0.666 GT:AD:DP:GQ:PL 0/1:139,127:266:99:3069,0,3138 19 19648346 rs1054930 G C 2477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-2.15;SOR=0.743 GT:AD:DP:GQ:PL 0/1:75,106:181:99:2506,0,1785 19 19735257 rs1266503 G T 5426.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=1.13 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5455,550,0 19 19737686 rs33982830 C T 3682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.339;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=3.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.234;SOR=0.524 GT:AD:DP:GQ:PL 0/1:149,157:306:99:3711,0,3980 19 19746214 rs2304129 C G 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.085;SOR=0.764 GT:AD:DP:GQ:PL 0/1:59,70:129:99:1726,0,1428 19 19790159 rs4808209 A C 3148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.561;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=0.107;SOR=0.727 GT:AD:DP:GQ:PL 0/1:135,133:268:99:3177,0,3150 19 19823270 rs12973901 T A 6481.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.41;SOR=0.754 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6510,600,0 19 20003109 rs8106559 A G 4976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.312;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=0.336;SOR=0.631 GT:AD:DP:GQ:PL 0/1:164,185:349:99:5005,0,4057 19 20003576 rs12460570 C G 1439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.33;ReadPosRankSum=2.046;SOR=0.525 GT:AD:DP:GQ:PL 0/1:51,57:108:99:1468,0,1403 19 20044041 rs12151060 G T 1730.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.51;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=6.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=0.469;SOR=1.178 GT:AD:DP:GQ:PL 0/1:87,74:161:99:1759,0,2389 19 20229486 rs1725935 G A 4458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.6;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=1.58;QD=13.93;ReadPosRankSum=0.917;SOR=0.606 GT:AD:DP:GQ:PL 0/1:143,177:320:99:4487,0,3707 19 20295146 rs1097510 G A 1740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.25;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-2.153;SOR=0.773 GT:AD:DP:GQ:PL 0/1:113,80:193:99:1769,0,4456 19 20807133 . GGCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA G 10980.7 PASS AC=2;AF=1;AN=2;DP=335;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.43;QD=32.98;SOR=1.015 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,333:333:99:1|1:20807133_GGCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA_G:11018,860,0 19 20807352 rs62107361 C T 17061.8 PASS AC=2;AF=1;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.09;QD=40.92;SOR=0.955 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,417:417:99:1|1:20807133_GGCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA_G:17090,1288,0 19 20807438 rs62107362 A G 15014.8 PASS AC=2;AF=1;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.01;QD=30.58;SOR=0.855 GT:AD:DP:GQ:PL 1/1:0,491:491:99:15043,1462,0 19 20808149 rs1991528 A G 8391.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.808;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=4.097;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=32.03;ReadPosRankSum=1.927;SOR=1.008 GT:AD:DP:GQ:PL 1/1:1,261:262:99:8420,760,0 19 21292448 rs7248410 C A 266.78 PASS AC=2;AF=1;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,9:9:27:295,27,0 19 21299774 rs36125838 T TATA 7228.73 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=44.62;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,162:162:99:7266,487,0 19 21300462 rs2884554 A G 10938.8 PASS AC=2;AF=1;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,344:344:99:10967,1024,0 19 21477431 rs1781873 T C 5535.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=0.904 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5564,525,0 19 21492062 rs547516 G A 7698.77 PASS AC=2;AF=1;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.92;QD=28.83;SOR=1.128 GT:AD:DP:GQ:PL 1/1:0,267:267:99:7727,800,0 19 21587918 rs7254059 G T 10881.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.849;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.34;ReadPosRankSum=1.101;SOR=0.297 GT:AD:DP:GQ:PL 1/1:1,383:384:99:10910,1134,0 19 21606429 rs4621113 G T 5231.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.58;QD=32.5;SOR=1.373 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5260,482,0 19 21719401 rs35782355 T C 4270.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.63;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4299,381,0 19 22154510 . C A 421.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0;DP=678;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=59.12;MQRankSum=-4.199;QD=0.62;ReadPosRankSum=-5.491;SOR=0.815 GT:AD:DP:GQ:PGT:PID:PL 0/1:611,65:676:99:0|1:22154510_C_A:450,0,33862 19 22156110 rs139171819 T C 7703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.785;ClippingRankSum=0;DB;DP=618;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=56.88;MQRankSum=-0.787;QD=12.53;ReadPosRankSum=-0.806;SOR=0.796 GT:AD:DP:GQ:PL 0/1:307,308:615:99:7732,0,7272 19 22498943 rs8104705 T C 6648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.931;ClippingRankSum=0;DB;DP=516;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=56.99;MQRankSum=-11.271;QD=12.91;ReadPosRankSum=1.015;SOR=0.767 GT:AD:DP:GQ:PL 0/1:260,255:515:99:6677,0,6099 19 22574699 rs200563839 T C 857.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.6;QD=30.63;SOR=5.283 GT:AD:DP:GQ:PL 1/1:0,28:28:84:886,84,0 19 23328432 rs61744908 A G 1634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.916;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-1.866;SOR=0.82 GT:AD:DP:GQ:PL 0/1:65,65:130:99:1663,0,1616 19 23328940 rs7247102 G A 6541.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.9;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6570,580,0 19 23542290 rs428549 A G 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.686;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.5;MQ=59.49;MQRankSum=-1.902;QD=20.45;ReadPosRankSum=-0.354;SOR=0.558 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,53:100:99:0|1:23542290_A_G:2073,0,2876 19 23542291 rs385750 G C 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.5;MQ=59.5;MQRankSum=-1.942;QD=20.05;ReadPosRankSum=-0.061;SOR=0.515 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,53:102:99:0|1:23542290_A_G:2073,0,2876 19 23542697 rs1821845 G C 4912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0;DB;DP=445;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=1.231;QD=11.04;ReadPosRankSum=0.034;SOR=0.768 GT:AD:DP:GQ:PL 0/1:254,191:445:99:4941,0,7004 19 23543834 rs7255296 C T 5024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.751;ClippingRankSum=0;DB;DP=454;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=57.27;MQRankSum=1.137;QD=11.07;ReadPosRankSum=0.132;SOR=0.601 GT:AD:DP:GQ:PL 0/1:243,211:454:99:5053,0,6653 19 23544625 rs403356 C T 1027.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.683;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=79.028;MLEAC=1;MLEAF=0.5;MQ=42.58;MQRankSum=-8.668;QD=5.14;ReadPosRankSum=-0.749;SOR=4.171 GT:AD:DP:GQ:PL 0/1:148,52:200:99:1056,0,3995 19 23545004 rs296092 G A 3032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.734;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.5;MQ=59.83;MQRankSum=0.873;QD=10.32;ReadPosRankSum=-1.122;SOR=0.91 GT:AD:DP:GQ:PL 0/1:168,126:294:99:3061,0,4831 19 23545250 rs1044095 A G 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=0.046;SOR=0.714 GT:AD:DP:GQ:PL 0/1:97,100:197:99:2621,0,2537 19 23545530 . G GA 49.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.954;QD=0.52;ReadPosRankSum=-0.92;SOR=0.795 GT:AD:DP:GQ:PL 0/1:82,14:104:87:87,0,1733 19 23837145 rs11671053 A G 2106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.548;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.14;ReadPosRankSum=0.341;SOR=0.636 GT:AD:DP:GQ:PL 0/1:66,83:149:99:2135,0,1627 19 23837365 rs4380159 A C 4199.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4228,397,0 19 23869823 rs2364624 T G 4606.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4635,456,0 19 23926708 rs1852433 A G 11169.8 PASS AC=2;AF=1;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=0.912 GT:AD:DP:GQ:PL 1/1:0,351:351:99:11198,1050,0 19 23927468 rs1818989 A G 8632.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.74;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,235:235:99:8661,705,0 19 23928102 rs7248674 C G 3318.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=1.396 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3347,314,0 19 23938360 . A AACAC 1342.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.19;ClippingRankSum=0;DP=286;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.63;ReadPosRankSum=-1.44;SOR=0.644 GT:AD:DP:GQ:PL 0/1:134,42:204:99:1380,0,5535 19 29704002 rs11666764 T C 6329.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.75;QD=43.65;SOR=1.981 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,145:145:99:1|1:29704002_T_C:6358,436,0 19 29704010 rs8100724 A C 6012.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54;QD=44.87;SOR=1.851 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,134:134:99:1|1:29704002_T_C:6041,409,0 19 30101339 rs11556817 G A 2995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-3.647;SOR=0.888 GT:AD:DP:GQ:PL 0/1:146,126:272:99:3024,0,3821 19 30102856 rs2288477 A G 2569.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2598,267,0 19 30106130 . CTT C,CT 1326.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DP=97;ExcessHet=3.0103;FS=2.572;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.33;MQRankSum=0.729;QD=15.25;ReadPosRankSum=1.789;SOR=0.913 GT:AD:DP:GQ:PL 1/2:13,19,55:92:99:1364,808,1202,175,0,211 19 30193721 rs10424582 G A 2966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=3.801;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=1.243;SOR=0.515 GT:AD:DP:GQ:PL 0/1:168,133:301:99:2995,0,4137 19 30500118 rs10559374 GTGA G 6941.73 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.82;QD=43.12;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,161:168:99:6979,494,0 19 31038995 rs1469705 T C 7344.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7373,717,0 19 31039256 rs111707808 C T 1721.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.045;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.386;SOR=0.865 GT:AD:DP:GQ:PL 0/1:91,78:169:99:1750,0,2508 19 31039669 rs77238711 C T 3123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.451;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.948;SOR=0.653 GT:AD:DP:GQ:PL 0/1:155,132:287:99:3152,0,3794 19 31768416 rs3745784 A G 3499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.978;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.344;SOR=0.679 GT:AD:DP:GQ:PL 0/1:144,153:297:99:3528,0,3598 19 31768945 rs61747224 G A 3704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.593;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=0.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.336;SOR=0.644 GT:AD:DP:GQ:PL 0/1:156,156:312:99:3733,0,3494 19 32873698 rs2270399 A G 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-0.21;SOR=0.738 GT:AD:DP:GQ:PL 0/1:119,92:211:99:2069,0,2954 19 32930069 rs6510249 G A 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=2.147;SOR=0.683 GT:AD:DP:GQ:PL 0/1:66,67:133:99:1507,0,1517 19 33098632 rs2302970 G C 3257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=1.927;SOR=0.781 GT:AD:DP:GQ:PL 0/1:125,142:267:99:3286,0,2763 19 33106621 rs405858 C T 2496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.016;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-2.716;SOR=0.711 GT:AD:DP:GQ:PL 0/1:112,111:223:99:2525,0,2465 19 33110149 rs28615461 T C 1437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=16.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=-1.799;SOR=1.38 GT:AD:DP:GQ:PL 0/1:89,68:157:99:1466,0,2223 19 33110204 rs2287669 T C 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=11.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=1.254;SOR=1.144 GT:AD:DP:GQ:PL 0/1:112,94:206:99:2209,0,2739 19 33117666 rs6510271 T C 1743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=0.36;SOR=0.79 GT:AD:DP:GQ:PL 0/1:57,77:134:99:1772,0,1388 19 33167208 rs3826926 C G 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.403;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=-0.973;SOR=0.631 GT:AD:DP:GQ:PL 0/1:73,63:136:99:1669,0,2003 19 33167455 rs259290 G T 2369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=-2.118;SOR=0.833 GT:AD:DP:GQ:PL 0/1:96,98:194:99:2398,0,2537 19 33167879 rs259291 G A 1677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=3.101;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=0.102;SOR=0.475 GT:AD:DP:GQ:PL 0/1:84,68:152:99:1706,0,2219 19 33183352 rs61732600 G C 2248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-1.064;SOR=0.505 GT:AD:DP:GQ:PL 0/1:84,94:178:99:2277,0,2139 19 33239450 rs4805805 C G 1023.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.24;ReadPosRankSum=-0.58;SOR=0.789 GT:AD:DP:GQ:PL 0/1:53,47:100:99:1052,0,1293 19 33264348 rs12608647 G T 878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.455;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=2.05;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.271;SOR=1.091 GT:AD:DP:GQ:PL 0/1:35,35:70:99:907,0,844 19 33281924 rs11881633 A G 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.595;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=0.267;SOR=0.652 GT:AD:DP:GQ:PL 0/1:84,76:160:99:1765,0,1923 19 33293948 rs35110475 G A 1709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.32;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-0.088;SOR=0.828 GT:AD:DP:GQ:PL 0/1:78,77:155:99:1738,0,1768 19 33304690 rs8107900 C T 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.758;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.3;ReadPosRankSum=0.707;SOR=0.505 GT:AD:DP:GQ:PL 0/1:27,56:83:99:1298,0,546 19 33353041 rs1007161 G A 850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.513;SOR=0.813 GT:AD:DP:GQ:PL 0/1:51,38:89:99:879,0,1203 19 33353061 rs1007160 G T 922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.908;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-0.787;SOR=0.892 GT:AD:DP:GQ:PL 0/1:54,42:96:99:951,0,1220 19 33353464 rs11084673 G A 1601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0;QD=11.28;ReadPosRankSum=0.898;SOR=0.522 GT:AD:DP:GQ:PL 0/1:74,68:142:99:1630,0,1942 19 33355055 rs12150889 A G 2460.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.95;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.826;SOR=0.6 GT:AD:DP:GQ:PL 0/1:110,101:211:99:2489,0,2667 19 33355081 rs35170371 G A 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.799;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.275;SOR=0.673 GT:AD:DP:GQ:PL 0/1:105,108:215:99:2736,0,2466 19 33390796 rs10418340 G A 3313.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3342,330,0 19 33406442 rs7246178 A G 2555.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=2.332 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2584,236,0 19 33439158 rs12710001 T C 2172.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.22;SOR=1.15 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2201,230,0 19 33439187 rs3764633 G A 1072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.005;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.67;SOR=0.993 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1101,0,950 19 33444707 rs10411735 C T 992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=7.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.995;SOR=0.247 GT:AD:DP:GQ:PL 0/1:47,42:89:99:1021,0,1181 19 33467357 rs2304102 G A 1722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.653;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=0.486;SOR=0.588 GT:AD:DP:GQ:PL 0/1:68,69:137:99:1751,0,2005 19 33467576 rs7258185 G A 2681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.15;ReadPosRankSum=3.238;SOR=0.887 GT:AD:DP:GQ:PL 0/1:96,108:204:99:2710,0,2495 19 33487071 rs12610600 G C 2672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=1.468;QD=11.88;ReadPosRankSum=-1.09;SOR=0.632 GT:AD:DP:GQ:PL 0/1:109,116:225:99:2701,0,2726 19 33490480 rs74603434 G A 3432.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=15.128;MLEAC=1;MLEAF=0.5;MQ=55.56;MQRankSum=-13.419;QD=11.4;ReadPosRankSum=-3.68;SOR=1.35 GT:AD:DP:GQ:PL 0/1:183,118:301:99:3461,0,6040 19 33490488 rs12608926 G A 1854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.5;MQ=55.02;MQRankSum=7.005;QD=5.71;ReadPosRankSum=1.113;SOR=0.564 GT:AD:DP:GQ:PL 0/1:230,95:325:99:1883,0,7835 19 33490566 rs201801079 T C 2041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.94;ClippingRankSum=0;DB;DP=405;ExcessHet=3.0103;FS=3.602;MLEAC=1;MLEAF=0.5;MQ=53.6;MQRankSum=-6.981;QD=5.08;ReadPosRankSum=2.926;SOR=0.96 GT:AD:DP:GQ:PL 0/1:281,121:402:99:2070,0,7431 19 33490585 rs78615454 G A 159.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.62;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=53.98;MQRankSum=-5.037;QD=0.41;ReadPosRankSum=3.102;SOR=0.675 GT:AD:DP:GQ:PL 0/1:340,54:394:99:188,0,9887 19 33498978 rs2163807 A G 2636.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.922;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.221;SOR=0.546 GT:AD:DP:GQ:PL 0/1:111,110:221:99:2665,0,2517 19 33499071 rs10410414 G A 1654.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.148;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-1;QD=12.54;ReadPosRankSum=-0.162;SOR=0.956 GT:AD:DP:GQ:PL 0/1:65,67:132:99:1683,0,1614 19 33502714 rs2288854 A G 1680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.762;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.2;ReadPosRankSum=0.241;SOR=0.864 GT:AD:DP:GQ:PL 0/1:128,77:205:99:1709,0,3114 19 33579018 . CTT C 210.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.514;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=16.79;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.43;ReadPosRankSum=-0.437;SOR=3.108 GT:AD:DP:GQ:PL 0/1:14,11:29:99:248,0,382 19 33696708 rs2112800 T C 9206.77 PASS AC=2;AF=1;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9235,894,0 19 33696897 rs11084712 C T 8822.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.7 GT:AD:DP:GQ:PL 1/1:0,289:289:99:8851,867,0 19 33698291 rs3745974 T C 6781.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.08;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6810,598,0 19 33702245 rs2241378 A G 5867.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5896,597,0 19 33878837 rs17570 G A 5196.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.53;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5225,528,0 19 33878884 rs142070498 T C 1790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=1.348;SOR=0.558 GT:AD:DP:GQ:PL 0/1:89,80:169:99:1819,0,2120 19 34712654 rs536367 C T 4073.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.213 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4102,404,0 19 34842488 rs392340 T C 1142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.164;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.37;SOR=0.752 GT:AD:DP:GQ:PL 0/1:44,50:94:99:1171,0,972 19 34843761 rs397414 C A 2398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=38.083;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.872;QD=13.25;ReadPosRankSum=0.758;SOR=0.069 GT:AD:DP:GQ:PL 0/1:77,104:181:99:2427,0,1833 19 34843874 rs67192986 AGCCTGCCT A 3271.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.886;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.447;QD=22.26;ReadPosRankSum=0.407;SOR=0.641 GT:AD:DP:GQ:PL 0/1:62,85:153:99:3309,0,3480 19 34942872 rs2161472 A T 1892.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.05;SOR=1.567 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1921,189,0 19 34951356 . CT C 200.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0;DP=51;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.74;ReadPosRankSum=-1.266;SOR=0.392 GT:AD:DP:GQ:PL 0/1:22,13:51:99:238,0,506 19 34959979 rs7259160 A G 5159.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=28.99;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5188,532,0 19 34972892 rs12609305 A C 4083.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=1.406 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4112,431,0 19 34973413 rs1465433 T C 14259.8 PASS AC=2;AF=1;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,477:477:99:14288,1430,0 19 34973476 rs8107479 G A 12476.8 PASS AC=2;AF=1;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.698 GT:AD:DP:GQ:PL 1/1:0,415:415:99:12505,1236,0 19 35175877 rs117665320 G A 2879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.06;QD=11.03;ReadPosRankSum=-0.54;SOR=0.784 GT:AD:DP:GQ:PL 0/1:139,122:261:99:2908,0,3507 19 35487055 rs118155315 C T 1512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.925;QD=10.58;ReadPosRankSum=1.194;SOR=0.628 GT:AD:DP:GQ:PL 0/1:76,67:143:99:1541,0,1839 19 35501051 rs2290642 T C 1302.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=-0.497;SOR=0.394 GT:AD:DP:GQ:PL 0/1:37,55:92:99:1331,0,960 19 35510102 rs2290646 G C 922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.73;SOR=0.781 GT:AD:DP:GQ:PL 0/1:40,37:77:99:951,0,961 19 35512400 rs117408896 C T 1719.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.2;ReadPosRankSum=0.124;SOR=0.537 GT:AD:DP:GQ:PL 0/1:26,74:100:99:1748,0,497 19 35521779 rs72556351 G T 896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-1.04;SOR=0.637 GT:AD:DP:GQ:PL 0/1:51,43:94:99:925,0,1166 19 35524453 . C T 2499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.121;ClippingRankSum=0;DP=215;ExcessHet=3.0103;FS=6.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.433;SOR=0.475 GT:AD:DP:GQ:PL 0/1:107,108:215:99:2528,0,2756 19 35524824 rs55742440 T C 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=-2.263;SOR=0.696 GT:AD:DP:GQ:PL 0/1:63,98:161:99:2522,0,1504 19 35612159 rs2290649 C G 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.139;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=-0.611;SOR=0.692 GT:AD:DP:GQ:PL 0/1:79,83:162:99:2069,0,1836 19 35614336 rs1672974 T C 1912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.677;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.18;ReadPosRankSum=0.736;SOR=0.589 GT:AD:DP:GQ:PL 0/1:57,69:126:99:1941,0,1327 19 35616087 rs3826989 G A 1860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.784;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.125;SOR=0.614 GT:AD:DP:GQ:PL 0/1:79,82:161:99:1889,0,2096 19 35622695 rs1673007 A G 770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.66;ReadPosRankSum=0.506;SOR=0.765 GT:AD:DP:GQ:PL 0/1:53,36:89:99:799,0,1319 19 35648365 rs1688005 T G 1123.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1152,117,0 19 35655151 rs1672994 T C 1784.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1813,192,0 19 35660508 rs12110 G A 1896.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.89;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1925,204,0 19 35741456 rs2073900 T C 2092.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.778;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=0.192;SOR=0.722 GT:AD:DP:GQ:PL 0/1:151,94:245:99:2121,0,3391 19 35770056 rs2280746 G A 3683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.11;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=0.687;SOR=0.675 GT:AD:DP:GQ:PL 0/1:154,150:304:99:3712,0,3799 19 35770174 rs12742 A G 2870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.367;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.279;SOR=0.833 GT:AD:DP:GQ:PL 0/1:131,120:251:99:2899,0,2942 19 35786868 rs2301600 C T 2146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.653;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=0.59;SOR=0.785 GT:AD:DP:GQ:PL 0/1:119,97:216:99:2175,0,3011 19 35790503 rs3746248 G A 1783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.417;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=0.373;SOR=0.785 GT:AD:DP:GQ:PL 0/1:87,81:168:99:1812,0,2457 19 35836530 rs10406069 G A 1106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.369;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=1.182;SOR=0.998 GT:AD:DP:GQ:PL 0/1:42,47:89:99:1135,0,948 19 35843086 rs2301151 G A 8952.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.879 GT:AD:DP:GQ:PL 1/1:0,291:291:99:8981,872,0 19 35849926 rs79251979 G A 1359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.077;ClippingRankSum=0;DB;DP=487;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.77;MQRankSum=-1.027;QD=2.8;ReadPosRankSum=1.384;SOR=0.714 GT:AD:DP:GQ:PL 0/1:390,96:486:99:1388,0,9969 19 35850416 rs146211359 G A 1726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.268;ClippingRankSum=0;DB;DP=328;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.5;MQ=45.25;MQRankSum=-5.233;QD=5.3;ReadPosRankSum=1.585;SOR=0.539 GT:AD:DP:GQ:PL 0/1:230,96:328:99:1755,0,6298 19 35850672 rs142125121 T C 531.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.943;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.5;MQ=37.83;MQRankSum=-1.41;QD=3.67;ReadPosRankSum=0.71;SOR=1.038 GT:AD:DP:GQ:PL 0/1:114,31:145:99:560,0,3028 19 35991442 rs909072 T G 2512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=0.372;SOR=0.665 GT:AD:DP:GQ:PL 0/1:147,115:262:99:2541,0,3417 19 35998362 rs4254439 T G 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=3.378;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.008;SOR=0.925 GT:AD:DP:GQ:PL 0/1:62,55:117:99:1190,0,1404 19 36002361 . ACTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG A 4172.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.33;ClippingRankSum=0;DP=495;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=5.628;QD=9.42;ReadPosRankSum=2.214;SOR=0.829 GT:AD:DP:GQ:PL 0/1:319,124:443:99:4210,0,16499 19 36002710 rs4806162 C A 1405.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.81;ReadPosRankSum=-0.985;SOR=0.535 GT:AD:DP:GQ:PL 0/1:109,71:180:99:1434,0,2635 19 36004106 rs4806163 A G 4129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.276;ClippingRankSum=0;DB;DP=382;ExcessHet=3.0103;FS=0.376;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=2.418;SOR=0.66 GT:AD:DP:GQ:PL 0/1:212,166:378:99:4158,0,5394 19 36004171 rs12460932 C A 4475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.258;ClippingRankSum=0;DB;DP=421;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-0.848;SOR=0.514 GT:AD:DP:GQ:PL 0/1:227,192:419:99:4504,0,5893 19 36017928 rs10775583 G C 2776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.031;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.29;ReadPosRankSum=-1.175;SOR=0.562 GT:AD:DP:GQ:PL 0/1:103,106:209:99:2805,0,2646 19 36018272 rs12461911 C T 4916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0;DB;DP=588;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.46;MQRankSum=1.143;QD=10.33;ReadPosRankSum=1.813;SOR=0.726 GT:AD:DP:GQ:PL 0/1:249,227:476:99:4945,0,6158 19 36033460 rs2239945 C T 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=0.058;SOR=0.94 GT:AD:DP:GQ:PL 0/1:46,50:96:99:1253,0,1173 19 36038221 rs759996 T C 2736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=0.621;SOR=0.746 GT:AD:DP:GQ:PL 0/1:145,120:265:99:2765,0,3851 19 36050969 rs2733743 A G 4356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.691;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=2.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.829;SOR=0.545 GT:AD:DP:GQ:PL 0/1:154,177:331:99:4385,0,3480 19 36168914 rs2285421 T C 2930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=1.431;SOR=1.014 GT:AD:DP:GQ:PL 0/1:101,122:223:99:2959,0,2396 19 36214632 rs11373774 A AG 5180.73 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=37.01;SOR=1.576 GT:AD:DP:GQ:PL 1/1:0,140:140:99:5218,421,0 19 36224705 rs231591 A G 2103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.534;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-1.212;SOR=0.809 GT:AD:DP:GQ:PL 0/1:73,78:151:99:2132,0,1815 19 36235655 rs34632325 G C 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=-0.601;SOR=0.753 GT:AD:DP:GQ:PL 0/1:37,51:88:99:1327,0,927 19 36236120 rs231597 A G 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.173;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=5.099;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=-1.589;SOR=0.733 GT:AD:DP:GQ:PL 0/1:60,81:141:99:2218,0,1458 19 36243089 rs170758 T C 3077.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.17;ReadPosRankSum=-0.654;SOR=0.452 GT:AD:DP:GQ:PL 1/1:1,101:102:99:3106,266,0 19 36243813 rs231243 G A 6081.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6110,606,0 19 36255965 rs7252936 C G 3226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.594;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-0.342;SOR=0.629 GT:AD:DP:GQ:PL 0/1:149,126:275:99:3255,0,3929 19 36258937 rs5827939 AG A 11444.7 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=35.21;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,325:325:99:11482,978,0 19 36259292 rs11881839 C T 2168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.026;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.497;SOR=0.792 GT:AD:DP:GQ:PL 0/1:101,85:186:99:2197,0,2677 19 36259415 rs35178229 G A 2603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=1.058;SOR=0.867 GT:AD:DP:GQ:PL 0/1:101,108:209:99:2632,0,2453 19 36268771 rs231228 C T 2132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.918;SOR=0.745 GT:AD:DP:GQ:PL 0/1:78,94:172:99:2161,0,1832 19 36269915 rs231230 T C 745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=0.712;SOR=0.546 GT:AD:DP:GQ:PL 0/1:37,33:70:99:774,0,969 19 36271139 rs231233 C T 2661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.413;SOR=0.591 GT:AD:DP:GQ:PL 0/1:97,118:217:99:2690,0,2306 19 36276403 rs120959 T G 3399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.388;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=1.782;SOR=0.643 GT:AD:DP:GQ:PL 0/1:187,138:325:99:3428,0,4688 19 36278470 rs231235 C G 3549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.33;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.953;SOR=0.689 GT:AD:DP:GQ:PL 0/1:126,148:274:99:3578,0,3070 19 36343206 rs139954720 GTC G 407.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.023;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=3.173;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.04;ReadPosRankSum=0.162;SOR=0.976 GT:AD:DP:GQ:PL 0/1:170,30:209:99:445,0,5544 19 36355595 rs382789 A G 3540.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3569,364,0 19 36486445 rs7249826 G C 5820.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.34;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5849,540,0 19 36497358 rs2285422 C G 4559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.223;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.78;SOR=0.764 GT:AD:DP:GQ:PL 0/1:156,179:335:99:4588,0,4212 19 36517654 rs138291759 G A 4920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.467;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.93;ReadPosRankSum=-1.419;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 0/1:131,129:260:99:0|1:36517654_G_A:4949,0,7417 19 36517655 rs10418015 C T 4920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19;ReadPosRankSum=-1.576;SOR=0.747 GT:AD:DP:GQ:PGT:PID:PL 0/1:130,129:259:99:0|1:36517654_G_A:4949,0,7417 19 36530332 rs10420353 G A 3553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.896;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=5.139;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=1.886;SOR=0.972 GT:AD:DP:GQ:PL 0/1:166,146:312:99:3582,0,4109 19 36530343 rs10421966 C T 3772.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.187;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=14.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=1.337;SOR=0.953 GT:AD:DP:GQ:PL 0/1:153,145:298:99:3801,0,3876 19 36558712 rs10423651 C T 1168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.731;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.099;SOR=0.519 GT:AD:DP:GQ:PL 0/1:55,51:106:99:1197,0,1541 19 36590329 rs2285745 T C 2650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=-0.181;SOR=0.689 GT:AD:DP:GQ:PL 0/1:96,118:214:99:2679,0,2060 19 36594659 rs2074435 A T 2966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.259;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=0.825;SOR=0.682 GT:AD:DP:GQ:PL 0/1:150,116:266:99:2995,0,3694 19 36595436 rs1008328 A C 2219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=4.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.057;SOR=0.463 GT:AD:DP:GQ:PL 0/1:102,101:203:99:2248,0,2435 19 36603703 rs2072605 T A 2780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.472;SOR=0.713 GT:AD:DP:GQ:PL 0/1:121,115:236:99:2809,0,2887 19 36727365 rs2070132 G A 5688.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.109 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5717,575,0 19 36940760 rs2967532 G T 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=0.145;SOR=0.582 GT:AD:DP:GQ:PL 0/1:102,73:175:99:1587,0,2565 19 37038092 rs2278168 T C 1617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.043;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-0.283;SOR=0.559 GT:AD:DP:GQ:PL 0/1:86,73:159:99:1646,0,2042 19 37039069 rs2912444 A C 2374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-0.899;SOR=0.728 GT:AD:DP:GQ:PL 0/1:77,103:180:99:2403,0,1751 19 37063218 rs11448179 C CA 1148.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.839;QD=11.26;ReadPosRankSum=-0.837;SOR=0.779 GT:AD:DP:GQ:PL 0/1:48,54:119:99:1186,0,878 19 37117302 rs3108171 A G 4528.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4557,445,0 19 37118439 rs61732180 C T 1258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.783;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=6.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.052;SOR=1.361 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1287,0,1231 19 37147330 rs12981751 T G 1338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.557;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-0.315;SOR=0.711 GT:AD:DP:GQ:PL 0/1:53,56:109:99:1367,0,1139 19 37210529 rs3108200 A G 2973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.614;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.65;ReadPosRankSum=0.159;SOR=0.473 GT:AD:DP:GQ:PL 0/1:78,112:190:99:3002,0,1945 19 37210805 rs3108201 C T 5213.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5242,501,0 19 37241141 rs1673082 A G 4221.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4250,404,0 19 37441111 rs571294 C T 1659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.347;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-2.025;SOR=0.774 GT:AD:DP:GQ:PL 0/1:99,71:170:99:1688,0,2503 19 37441365 rs547483 T C 2720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=2.14;SOR=0.692 GT:AD:DP:GQ:PL 0/1:110,112:222:99:2749,0,2544 19 37441462 rs546589 T C 2314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.67;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=1.048;QD=12.25;ReadPosRankSum=-0.79;SOR=0.744 GT:AD:DP:GQ:PL 0/1:91,98:189:99:2343,0,2253 19 37441980 rs1644634 A G 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.884;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=-0.984;SOR=0.81 GT:AD:DP:GQ:PL 0/1:47,62:109:99:1640,0,1110 19 37482068 rs1644679 T G 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.186;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=-0.93;QD=10.86;ReadPosRankSum=2.042;SOR=0.797 GT:AD:DP:GQ:PL 0/1:74,66:140:99:1549,0,1753 19 37482151 rs1667354 A G 2227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.276;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-1.006;QD=12.59;ReadPosRankSum=0.529;SOR=0.725 GT:AD:DP:GQ:PL 0/1:87,90:177:99:2256,0,1977 19 37482765 rs1644681 T C 2257.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.774;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.81;ReadPosRankSum=-0.587;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,60:120:99:0|1:37482765_T_C:2286,0,3180 19 37482766 rs7248693 G A 2278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.68;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.64;ReadPosRankSum=0.201;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,56:116:99:0|1:37482765_T_C:2307,0,3177 19 37487632 rs935706 G A 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=3.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.309;SOR=0.726 GT:AD:DP:GQ:PL 0/1:86,73:159:99:1693,0,2207 19 37487723 rs935707 G A 2628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=0.307;SOR=0.819 GT:AD:DP:GQ:PL 0/1:96,111:207:99:2657,0,2342 19 37487866 rs1667363 A T 3274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.57;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.49;ReadPosRankSum=-0.316;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 0/1:80,88:168:99:0|1:37487866_A_T:3303,0,4645 19 37487873 rs1667364 C A 3144.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=4.596;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.29;ReadPosRankSum=2.232;SOR=1.014 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,80:163:99:0|1:37487866_A_T:3173,0,4790 19 37487975 rs16971886 G A 2449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.594;SOR=0.784 GT:AD:DP:GQ:PL 0/1:112,106:218:99:2478,0,2494 19 37488197 rs1345748 G A 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.122;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.118;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.554;SOR=0.515 GT:AD:DP:GQ:PL 0/1:101,105:206:99:2452,0,2707 19 37488299 rs1363752 A G 2540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.744;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.06;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.949;SOR=0.592 GT:AD:DP:GQ:PL 0/1:110,102:212:99:2569,0,2808 19 37488472 rs1644698 C G 2312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.495;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.32;ReadPosRankSum=-0.099;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,64:151:99:0|1:37488472_C_G:2341,0,4063 19 37488481 rs1363753 G C 2201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.62;ReadPosRankSum=0.238;SOR=0.874 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,58:141:99:0|1:37488472_C_G:2230,0,4195 19 37488499 rs1667366 T C 1931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.75;ReadPosRankSum=0.866;SOR=0.948 GT:AD:DP:GQ:PGT:PID:PL 0/1:77,54:131:99:0|1:37488472_C_G:1960,0,3739 19 37642917 rs77675231 G A 4896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=0.412;MLEAC=1;MLEAF=0.5;MQ=55.93;MQRankSum=-2.743;QD=15.55;ReadPosRankSum=1.432;SOR=0.687 GT:AD:DP:GQ:PGT:PID:PL 0/1:182,133:315:99:0|1:37642917_G_A:4925,0,8926 19 37642922 rs79071992 C T 4866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.5;MQ=55.6;MQRankSum=-2.355;QD=15.8;ReadPosRankSum=1.873;SOR=0.632 GT:AD:DP:GQ:PGT:PID:PL 0/1:177,131:308:99:0|1:37642917_G_A:4895,0,8782 19 37644051 rs57916401 T C 3282.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.64;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=3.235;MLEAC=1;MLEAF=0.5;MQ=58.18;MQRankSum=-6.643;QD=11.64;ReadPosRankSum=-0.749;SOR=0.795 GT:AD:DP:GQ:PL 0/1:140,142:282:99:3311,0,3416 19 37676528 rs75662394 G A 4110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.5;MQ=57.22;MQRankSum=1.466;QD=12.85;ReadPosRankSum=2.156;SOR=0.692 GT:AD:DP:GQ:PL 0/1:153,167:322:99:4139,0,3811 19 37677748 rs45626541 T A 3299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.011;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-0.503;QD=12.36;ReadPosRankSum=-0.608;SOR=0.612 GT:AD:DP:GQ:PL 0/1:138,129:267:99:3328,0,3257 19 37726433 rs320880 G A 1150.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.216;SOR=0.609 GT:AD:DP:GQ:PL 0/1:47,50:97:99:1179,0,1161 19 37838785 rs377635462 A G 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.523;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=-0.319;SOR=0.762 GT:AD:DP:GQ:PL 0/1:30,39:69:99:1005,0,649 19 37879852 rs376931538 C CTGTG 4502.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.34;ReadPosRankSum=1.132;SOR=0.71 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,112:211:99:0|1:37879852_C_CTGTG:4540,0,6576 19 37879854 rs200420244 AT A 4499.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.166;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.643;QD=21.13;ReadPosRankSum=0.738;SOR=0.711 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,113:213:99:0|1:37879852_C_CTGTG:4537,0,6608 19 38027957 rs45593644 A G 1946.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.469;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-1.078;SOR=0.717 GT:AD:DP:GQ:PL 0/1:100,83:183:99:1975,0,2482 19 38055612 rs4802029 A T 1689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.071;SOR=0.444 GT:AD:DP:GQ:PL 0/1:83,74:157:99:1718,0,2091 19 38056574 rs28512414 T A 1792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-2.099;SOR=0.712 GT:AD:DP:GQ:PL 0/1:66,75:141:99:1821,0,1611 19 38056763 rs8111790 C G 1974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.314;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.46;ReadPosRankSum=-0.767;SOR=0.63 GT:AD:DP:GQ:PL 0/1:50,70:120:99:2003,0,1271 19 38091932 rs1975937 A T 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=-0.398;SOR=0.585 GT:AD:DP:GQ:PL 0/1:58,54:112:99:1150,0,1442 19 38160760 rs79684824 G A 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.9;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.44;ReadPosRankSum=1.588;SOR=0.583 GT:AD:DP:GQ:PL 0/1:82,101:183:99:2487,0,2104 19 38189440 rs958305 T C 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.11;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=0.134;SOR=0.669 GT:AD:DP:GQ:PL 0/1:86,95:181:99:2469,0,2116 19 38189555 rs61910733 T C 2470.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=-1.356;SOR=0.833 GT:AD:DP:GQ:PL 0/1:86,96:182:99:2499,0,2232 19 38189616 rs2075284 T C 2314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-1.001;SOR=0.691 GT:AD:DP:GQ:PL 0/1:92,98:190:99:2343,0,2315 19 38202516 rs2909097 A C 3187.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.46;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3216,335,0 19 38229378 rs1291 G A 1609.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.262;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=1.54;SOR=0.971 GT:AD:DP:GQ:PL 0/1:75,63:138:99:1638,0,1919 19 38229824 rs3095726 T C 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-1.416;SOR=0.562 GT:AD:DP:GQ:PL 0/1:69,82:151:99:2100,0,1760 19 38376103 rs73027454 A G 2940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.183;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=-0.149;SOR=0.69 GT:AD:DP:GQ:PL 0/1:114,118:232:99:2969,0,2682 19 38376485 rs10408510 T A 8554.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.28;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8583,795,0 19 38377391 . TCCTCCTCCTCCTCCCTTA T 1610.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.5;MQ=63.26;MQRankSum=3.951;QD=22.37;ReadPosRankSum=0.639;SOR=1.147 GT:AD:DP:GQ:PGT:PID:PL 0/1:25,47:72:99:0|1:38377391_TCCTCCTCCTCCTCCCTTA_T:1648,0,854 19 38377409 rs7252765 A T 637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.333;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.5;MQ=63.26;MQRankSum=-3.936;QD=8.86;ReadPosRankSum=-0.45;SOR=0.382 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,25:72:99:1|0:38377391_TCCTCCTCCTCCTCCCTTA_T:666,0,1648 19 38377564 rs7253969 T C 8353.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8382,826,0 19 38377773 rs34785154 G A 2974.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-1.229;SOR=0.681 GT:AD:DP:GQ:PL 0/1:113,124:237:99:3003,0,2751 19 38378107 rs60704260 G A 2351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.876;SOR=0.801 GT:AD:DP:GQ:PL 0/1:133,100:233:99:2380,0,3516 19 38378539 rs10422056 G C 8284.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.09;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,243:243:99:8313,729,0 19 38379446 rs6508750 C T 3684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.129;SOR=0.674 GT:AD:DP:GQ:PL 0/1:143,154:297:99:3713,0,3648 19 38382328 rs953370 C T 2704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.598;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=1.045;SOR=0.635 GT:AD:DP:GQ:PL 0/1:119,103:222:99:2733,0,2911 19 38384421 rs3894129 C G 7284.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,227:229:99:7313,681,0 19 38573149 rs10405667 G C 3753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.51;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.71;SOR=0.679 GT:AD:DP:GQ:PL 0/1:140,141:281:99:3782,0,3388 19 38610504 rs59185302 G A 1309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-1.942;SOR=0.55 GT:AD:DP:GQ:PL 0/1:52,59:111:99:1338,0,1315 19 38610542 rs59924887 G A 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-2.304;SOR=0.791 GT:AD:DP:GQ:PL 0/1:48,43:91:99:952,0,1109 19 38709552 rs2288909 C T 10395.8 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.8;SOR=1.144 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,227:227:99:1|1:38709532_C_G:10424,704,0 19 38709568 rs2255456 C T 10695.8 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.3;SOR=0.974 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,247:247:99:1|1:38709532_C_G:10724,749,0 19 38861333 rs1052375 G A 5725.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5754,564,0 19 38876725 rs202082712 G A 3683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.248;SOR=0.662 GT:AD:DP:GQ:PL 0/1:147,149:296:99:3712,0,3657 19 38882863 rs151129136 CCCT C 160.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=4.933;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.55;ReadPosRankSum=2.489;SOR=1.161 GT:AD:DP:GQ:PL 0/1:268,24:296:99:198,0,11002 19 38893856 rs3745957 G C 2221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.587;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=0.375;SOR=0.886 GT:AD:DP:GQ:PL 0/1:89,83:172:99:2250,0,2218 19 38935280 rs2229139 A G 5044.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.25;QD=29.5;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5073,512,0 19 38939408 rs10406027 T C 6878.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6907,705,0 19 38946182 rs2288888 G A 5032.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5061,509,0 19 38949904 rs3745847 C T 5344.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5373,528,0 19 38956803 rs2228069 G A 5800.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5829,578,0 19 39018347 rs55876273 G C 2418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.576;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=0.253;SOR=0.759 GT:AD:DP:GQ:PL 0/1:147,104:251:99:2447,0,3556 19 39074117 rs11325385 CA C 902.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.806;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=5.986;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=0.475;QD=13.89;ReadPosRankSum=-2.481;SOR=1.609 GT:AD:DP:GQ:PL 0/1:18,47:78:99:940,0,276 19 39196736 rs11553600 G A 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.816;SOR=0.688 GT:AD:DP:GQ:PGT:PID:PL 0/1:72,88:160:99:0|1:39196736_G_A:2062,0,2677 19 39196745 rs3745859 C T 1516.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.259;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.008;SOR=0.687 GT:AD:DP:GQ:PGT:PID:PL 0/1:84,67:151:99:1|0:39196736_G_A:1545,0,3256 19 39215193 rs145474119 G A 3025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.397;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=4.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=-1.303;SOR=0.953 GT:AD:DP:GQ:PL 0/1:144,126:270:99:3054,0,4026 19 39219780 rs1136956 T C 4048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.965;QD=13.19;ReadPosRankSum=-1.613;SOR=0.804 GT:AD:DP:GQ:PL 0/1:149,158:307:99:4077,0,3943 19 39224413 rs4801861 A G 2468.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.29;SOR=1.577 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2497,215,0 19 39228193 rs141065284 C A 2827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=1.432;SOR=0.912 GT:AD:DP:GQ:PL 0/1:120,109:229:99:2856,0,3083 19 39228244 rs73038948 T C 2423.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.334;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=-1.183;SOR=0.758 GT:AD:DP:GQ:PL 0/1:113,92:205:99:2452,0,2790 19 39233146 rs936524 A G 4409.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=1.027 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4438,450,0 19 39262459 rs201990738 A T 531.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.4;QD=29.54;SOR=5.892 GT:AD:DP:GQ:PL 1/1:0,18:18:54:560,54,0 19 39262681 rs201209491 A G 422.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.96;QD=28.18;SOR=4.047 GT:AD:DP:GQ:PL 1/1:0,15:15:45:451,45,0 19 39281540 rs147201724 T A 3731.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.02;QD=34.24;SOR=9.401 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3760,328,0 19 39308190 rs15570 C T 2578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.052;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-1.78;SOR=0.752 GT:AD:DP:GQ:PL 0/1:121,101:222:99:2607,0,3003 19 39322087 rs9419 T G 1543.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.2;SOR=0.541 GT:AD:DP:GQ:PL 0/1:75,64:139:99:1572,0,2018 19 39329517 rs8111670 C T 1154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=-0.454;SOR=0.772 GT:AD:DP:GQ:PL 0/1:79,49:128:99:1183,0,2129 19 39360720 rs8110393 G A 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.677;SOR=0.488 GT:AD:DP:GQ:PL 0/1:92,78:170:99:1920,0,2599 19 39364584 rs61747761 C T 1254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.756;SOR=0.646 GT:AD:DP:GQ:PL 0/1:39,58:97:99:1283,0,842 19 39408360 rs7508411 A G 796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=7.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.535;SOR=0.658 GT:AD:DP:GQ:PL 0/1:34,36:70:99:825,0,775 19 39421388 rs730078 A G 1182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.034;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.268;SOR=0.469 GT:AD:DP:GQ:PL 0/1:54,42:96:99:1211,0,1495 19 39433299 rs8113389 A G 2374.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.357;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.247;SOR=0.716 GT:AD:DP:GQ:PL 0/1:100,95:195:99:2403,0,2489 19 39440918 rs2304117 T C 2911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.395;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=1.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.65;SOR=0.822 GT:AD:DP:GQ:PL 0/1:131,118:249:99:2940,0,2911 19 39440966 rs2304118 T C 2915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.976;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=1.178;SOR=0.911 GT:AD:DP:GQ:PL 0/1:137,117:254:99:2944,0,3095 19 39590955 rs8110736 G A 3422.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.731;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=0.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=0.644;SOR=0.638 GT:AD:DP:GQ:PL 0/1:163,140:303:99:3451,0,3848 19 39735106 rs8103142 T C 1254.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.731;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.5;MQ=56.17;MQRankSum=-7.357;QD=9.09;ReadPosRankSum=-0.601;SOR=0.607 GT:AD:DP:GQ:PL 0/1:83,55:138:99:1283,0,1958 19 39738317 rs111531283 A C 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.81;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-1.361;QD=11.92;ReadPosRankSum=1.39;SOR=0.63 GT:AD:DP:GQ:PL 0/1:83,89:172:99:2078,0,1969 19 39738578 rs117648444 G A 2677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.013;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.331;SOR=0.744 GT:AD:DP:GQ:PL 0/1:123,122:245:99:2706,0,3093 19 39739153 rs11322783 CT C 4340.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.2;ReadPosRankSum=-2.467;SOR=0.605 GT:AD:DP:GQ:PGT:PID:PL 0/1:153,115:268:99:0|1:39739153_CT_C:4378,0,8186 19 39739155 rs74597329 T G 4349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.276;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.93;ReadPosRankSum=-2.156;SOR=0.625 GT:AD:DP:GQ:PGT:PID:PL 0/1:157,116:273:99:0|1:39739153_CT_C:4378,0,8186 19 39826177 rs201685815 G A 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.046;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-0.693;SOR=0.873 GT:AD:DP:GQ:PL 0/1:35,49:84:99:1162,0,754 19 39905903 rs3859551 A G 4739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.401;ClippingRankSum=0;DB;DP=342;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-0.794;SOR=0.566 GT:AD:DP:GQ:PL 0/1:159,182:341:99:4768,0,3825 19 39906985 rs10401595 T C 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=3.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.484;SOR=0.446 GT:AD:DP:GQ:PL 0/1:93,77:170:99:1874,0,2352 19 39907036 rs2277743 C T 2362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.112;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=7.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=0.145;SOR=0.371 GT:AD:DP:GQ:PL 0/1:104,100:204:99:2391,0,2880 19 39914308 rs31725 C T 8842.77 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.25;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,313:313:99:8871,927,0 19 39914748 rs31726 G A 7534.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7563,744,0 19 39915637 rs31727 G A 7781.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.087 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7810,762,0 19 39915758 rs31728 C G 9358.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.561;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=7.494;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.89;ReadPosRankSum=1.154;SOR=0.705 GT:AD:DP:GQ:PL 1/1:2,301:305:99:9387,882,0 19 39926509 rs17628 A C 5260.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,172:174:99:5289,518,0 19 39926521 rs17626 G A 5413.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5442,542,0 19 39944082 rs1130180 C T 5005.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5034,524,0 19 39955533 rs2304217 G A 7143.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,235:235:99:7172,703,0 19 39971432 rs2304220 G C 8908.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.87;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8937,813,0 19 39976464 rs4803245 C G 6793.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6822,663,0 19 39991237 rs2304223 C G 667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.26;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=3.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.76;ReadPosRankSum=1.205;SOR=1.139 GT:AD:DP:GQ:PL 0/1:54,32:86:99:696,0,1317 19 39993560 rs8107127 T G 2882.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.908;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=2.05;SOR=0.848 GT:AD:DP:GQ:PL 0/1:163,113:276:99:2911,0,3902 19 39993591 rs8106337 C G 2984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.715;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.47;SOR=0.859 GT:AD:DP:GQ:PL 0/1:147,118:265:99:3013,0,3538 19 39994711 rs1110627 T C 5774.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.21;ReadPosRankSum=-0.889;SOR=0.624 GT:AD:DP:GQ:PL 1/1:1,184:185:99:5803,516,0 19 39996027 rs2304214 C T 3510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DB;DP=323;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.058;SOR=0.586 GT:AD:DP:GQ:PL 0/1:164,156:320:99:3539,0,3885 19 40009396 rs56149652 A G 1884.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.902;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.851;QD=11.02;ReadPosRankSum=-1.71;SOR=0.791 GT:AD:DP:GQ:PL 0/1:98,73:171:99:1913,0,2590 19 40009778 . A G 1231.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.191;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=4.399;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=1.381;SOR=1.095 GT:AD:DP:GQ:PL 0/1:72,52:124:99:1260,0,1692 19 40023308 rs1123301 A G 9268.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.49;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,304:304:99:9297,910,0 19 40030559 . G A 6683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.316;ClippingRankSum=0;DP=495;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=1.58;SOR=0.759 GT:AD:DP:GQ:PL 0/1:238,255:493:99:6712,0,5813 19 40030654 rs76765165 G C 4847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.901;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=9.226;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.16;ReadPosRankSum=-0.638;SOR=1.143 GT:AD:DP:GQ:PL 0/1:140,160:300:99:4876,0,3643 19 40149297 rs1860134 T A 2241.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.5;SOR=1.519 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2270,228,0 19 40149330 rs997104 G C 1634.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=1.412 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1663,168,0 19 40197924 rs4830 T C 1379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.547;SOR=0.771 GT:AD:DP:GQ:PL 0/1:66,58:124:99:1408,0,1500 19 40199914 rs10755 C G 1545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.86;ReadPosRankSum=0.929;SOR=0.668 GT:AD:DP:GQ:PL 0/1:35,69:104:99:1574,0,734 19 40224986 rs384138 A G 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.488;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.212;SOR=0.724 GT:AD:DP:GQ:PL 0/1:65,68:133:99:1668,0,1534 19 40225646 rs17608 G A 1210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.209;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=2.273;SOR=0.514 GT:AD:DP:GQ:PL 0/1:52,55:107:99:1239,0,1386 19 40328339 rs62621202 C A 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=3.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=0.12;SOR=0.882 GT:AD:DP:GQ:PL 0/1:85,72:157:99:1549,0,2069 19 40357360 rs2075097 C G 1589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.86;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=9.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.275;SOR=1.44 GT:AD:DP:GQ:PL 0/1:71,64:135:99:1618,0,1713 19 40357683 rs759120 T G 3799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.611;SOR=0.587 GT:AD:DP:GQ:PL 0/1:146,170:316:99:3828,0,3226 19 40363916 rs77005739 C T 1554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.19;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=1.948;SOR=0.532 GT:AD:DP:GQ:PL 0/1:113,71:184:99:1583,0,3200 19 40366240 rs62106922 G A 6077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.596;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=57.98;MQRankSum=-0.515;QD=12.11;ReadPosRankSum=1.489;SOR=0.634 GT:AD:DP:GQ:PL 0/1:253,249:502:99:6106,0,6272 19 40366362 rs3855679 G C 18334.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.923;ClippingRankSum=0;DB;DP=564;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.57;MQRankSum=-0.498;QD=32.51;ReadPosRankSum=-0.742;SOR=0.309 GT:AD:DP:GQ:PL 1/1:1,563:564:99:18363,1681,0 19 40367444 rs201370318 C T 94.28 PASS AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40;QD=31.43;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,3:3:9:122,9,0 19 40367862 rs6508920 T C 6383.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.14;QD=26.6;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6412,707,0 19 40368391 rs76288738 G A 2797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0;DB;DP=610;ExcessHet=3.0103;FS=5.858;MLEAC=1;MLEAF=0.5;MQ=53.52;MQRankSum=-6.24;QD=4.83;ReadPosRankSum=3.769;SOR=1.16 GT:AD:DP:GQ:PL 0/1:423,156:579:99:2826,0,10905 19 40368395 rs28472548 C T 10509.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0;DB;DP=608;ExcessHet=3.0103;FS=7.161;MLEAC=1;MLEAF=0.5;MQ=53.76;MQRankSum=6.691;QD=18.18;ReadPosRankSum=-2.952;SOR=0.337 GT:AD:DP:GQ:PL 0/1:152,426:578:99:10538,0,2670 19 40368498 rs12610683 A C 20881.8 PASS AC=2;AF=1;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.59;QD=44.91;SOR=0.806 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,465:465:99:1|1:40368498_A_C:20910,1403,0 19 40368499 rs11083540 A C 20881.8 PASS AC=2;AF=1;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.55;QD=44.91;SOR=0.806 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,465:465:99:1|1:40368498_A_C:20910,1403,0 19 40368520 rs36079378 G C 12125.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-6.66;ClippingRankSum=0;DB;DP=471;ExcessHet=3.0103;FS=2.966;MLEAC=2;MLEAF=1;MQ=53.35;MQRankSum=7.563;QD=25.74;ReadPosRankSum=6.65;SOR=0.291 GT:AD:DP:GQ:PL 1/1:24,447:471:99:12154,587,0 19 40370213 rs144686927 G A 572.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.49;MQRankSum=0.612;QD=20.46;ReadPosRankSum=0.906;SOR=0.836 GT:AD:DP:GQ:PL 0/1:9,19:28:99:601,0,243 19 40370273 rs146481015 C T 858.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.3;QD=37.34;SOR=1.708 GT:AD:DP:GQ:PL 1/1:0,23:23:69:887,69,0 19 40370296 rs149092429 G C 513.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.654;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.5;MQ=33.79;MQRankSum=1.077;QD=19.76;ReadPosRankSum=-0.129;SOR=0.269 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,14:26:99:0|1:40370296_G_C:542,0,462 19 40370297 rs142203788 G A 510.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.241;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.5;MQ=33.51;MQRankSum=0.901;QD=20.43;ReadPosRankSum=0;SOR=0.339 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,13:25:99:0|1:40370296_G_C:539,0,490 19 40370312 rs151225679 G A 561.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.858;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.5;MQ=33.17;MQRankSum=0.173;QD=17.02;ReadPosRankSum=-1.119;SOR=0.247 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,17:33:99:0|1:40370296_G_C:590,0,578 19 40370346 rs140913216 G A 501.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.227;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=32.2;MQRankSum=-0.553;QD=12.24;ReadPosRankSum=0.884;SOR=0.536 GT:AD:DP:GQ:PL 0/1:22,19:41:99:530,0,621 19 40370471 rs146362587 G A 1920.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.038;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.47;MLEAC=1;MLEAF=0.5;MQ=36.36;MQRankSum=-2.092;QD=11.71;ReadPosRankSum=1.685;SOR=0.522 GT:AD:DP:GQ:PL 0/1:90,74:164:99:1949,0,2428 19 40374023 . C T 578.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DP=164;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=35.84;MQRankSum=1.438;QD=3.53;ReadPosRankSum=-1.212;SOR=1.027 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,26:164:99:0|1:40374023_C_T:607,0,5684 19 40374025 . A C 578.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.938;ClippingRankSum=0;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=35.54;MQRankSum=-0.34;QD=3.73;ReadPosRankSum=0.149;SOR=0.635 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,21:155:99:0|1:40374023_C_T:607,0,5684 19 40374034 rs138587194 A G 3831.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=6.072;MLEAC=2;MLEAF=1;MQ=35.16;MQRankSum=0.119;QD=27.37;ReadPosRankSum=-0.383;SOR=0.07 GT:AD:DP:GQ:PL 1/1:3,137:140:99:3860,345,0 19 40376811 rs4802062 C T 317.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.812;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=31.709;MLEAC=1;MLEAF=0.5;MQ=29.04;MQRankSum=-1.502;QD=2.48;ReadPosRankSum=0.525;SOR=0.742 GT:AD:DP:GQ:PL 0/1:101,27:128:99:346,0,2906 19 40376880 rs75009537 T C 1699.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.21;QD=43.58;SOR=2.362 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,39:39:99:1|1:40376880_T_C:1728,117,0 19 40376881 rs74819672 G C 1699.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.05;QD=45.94;SOR=2.774 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,37:37:99:1|1:40376880_T_C:1728,117,0 19 40382736 rs200801843 A T 5348.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=1.918;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=3.815;MLEAC=2;MLEAF=1;MQ=37.55;MQRankSum=-0.681;QD=27.43;ReadPosRankSum=-0.443;SOR=0.818 GT:AD:DP:GQ:PL 1/1:1,194:195:99:5377,574,0 19 40384605 rs143306165 A G 480.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.15;QD=36.98;SOR=5.283 GT:AD:DP:GQ:PL 1/1:0,13:13:39:509,39,0 19 40384623 rs151293840 A G 377.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.9;QD=37.78;SOR=4.804 GT:AD:DP:GQ:PL 1/1:0,10:10:30:406,30,0 19 40384650 rs201415831 G A 65.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.76;MQRankSum=-0.524;QD=13.15;ReadPosRankSum=-1.645;SOR=1.022 GT:AD:DP:GQ:PL 0/1:2,3:5:69:94,0,69 19 40384654 rs140677440 C T 36.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.76;MQRankSum=0.524;QD=7.35;ReadPosRankSum=1.645;SOR=0.446 GT:AD:DP:GQ:PL 0/1:3,2:5:65:65,0,95 19 40389657 rs148187888 T G 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.389;ClippingRankSum=0;DB;DP=419;ExcessHet=3.0103;FS=3.01;MLEAC=1;MLEAF=0.5;MQ=43.03;MQRankSum=-7.271;QD=3.7;ReadPosRankSum=-3.341;SOR=0.779 GT:AD:DP:GQ:PL 0/1:323,96:419:99:1580,0,7125 19 40389741 rs141158749 A G 53.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.891;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=21.311;MLEAC=1;MLEAF=0.5;MQ=36.63;MQRankSum=-2.877;QD=0.26;ReadPosRankSum=0.724;SOR=2.974 GT:AD:DP:GQ:PL 0/1:189,21:210:82:82,0,4633 19 40392359 rs56242719 T C 3608.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35;QD=31.66;SOR=1.25 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3637,342,0 19 40392482 rs62108883 A G 8258.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.5;QD=32.26;SOR=1.783 GT:AD:DP:GQ:PL 1/1:0,256:256:99:8287,768,0 19 40392496 rs143680639 C T 560.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.196;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.5;MQ=47.69;MQRankSum=-6.402;QD=1.67;ReadPosRankSum=-1.98;SOR=0.838 GT:AD:DP:GQ:PL 0/1:283,53:336:99:589,0,7600 19 40392585 rs79253448 T G 5272.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0;DB;DP=772;ExcessHet=3.0103;FS=1.82;MLEAC=1;MLEAF=0.5;MQ=50.39;MQRankSum=-19.029;QD=6.84;ReadPosRankSum=7.261;SOR=0.889 GT:AD:DP:GQ:PL 0/1:489,282:771:99:5301,0,11604 19 40396323 rs369105601 C G 857.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.833;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.81;MQRankSum=0.926;QD=14.79;ReadPosRankSum=0.435;SOR=0.61 GT:AD:DP:GQ:PL 0/1:30,28:58:99:886,0,953 19 40399383 rs138090709 T C 215.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.525;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.4;MQRankSum=-0.05;QD=4;ReadPosRankSum=0.205;SOR=0.383 GT:AD:DP:GQ:PL 0/1:41,13:54:99:244,0,1332 19 40399385 rs201168964 C T 181.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.511;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.47;MQRankSum=-1.513;QD=3.43;ReadPosRankSum=-0.737;SOR=0.338 GT:AD:DP:GQ:PL 0/1:41,12:53:99:210,0,1326 19 40399430 rs149549244 T C 107.03 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25.68;MQRankSum=0.431;QD=17.84;ReadPosRankSum=-0;SOR=2.303 GT:AD:DP:GQ:PL 0/1:1,5:6:12:135,0,12 19 40402212 rs146299561 C T 851.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.23;QD=31.55;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,27:27:81:880,81,0 19 40402410 rs2023286 G A 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.051;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.26;MQRankSum=-0.692;QD=15.21;ReadPosRankSum=0.158;SOR=0.73 GT:AD:DP:GQ:PL 0/1:50,58:108:99:1671,0,1283 19 40405899 rs7507507 G T 2202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.54;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.5;MQ=56.46;MQRankSum=-10.768;QD=11.18;ReadPosRankSum=-0.615;SOR=0.621 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,60:197:99:0|1:40405899_G_T:2231,0,6409 19 40405903 rs199846896 A AGCCC 1723.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.594;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=2.02;MLEAC=1;MLEAF=0.5;MQ=56.16;MQRankSum=-11.613;QD=8.79;ReadPosRankSum=-0.397;SOR=0.527 GT:AD:DP:GQ:PL 0/1:143,53:196:99:1761,0,6670 19 40405905 . C G 2298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.647;ClippingRankSum=0;DP=205;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.5;MQ=56.12;MQRankSum=-11.539;QD=11.32;ReadPosRankSum=-1.924;SOR=0.638 GT:AD:DP:GQ:PGT:PID:PL 0/1:139,64:203:99:0|1:40405899_G_T:2327,0,6443 19 40405912 rs45494494 T C 2541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.124;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=56.09;MQRankSum=-10.964;QD=11.93;ReadPosRankSum=-4.178;SOR=0.568 GT:AD:DP:GQ:PGT:PID:PL 0/1:138,75:213:99:0|1:40405899_G_T:2570,0,6355 19 40406029 rs61735676 C T 3389.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.837;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.5;MQ=53;MQRankSum=4.596;QD=11.11;ReadPosRankSum=-1.453;SOR=0.598 GT:AD:DP:GQ:PL 0/1:165,140:305:99:3418,0,3754 19 40408128 rs4803310 C T 3140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.5;MQ=57.27;MQRankSum=-6.14;QD=12.27;ReadPosRankSum=-0.087;SOR=0.636 GT:AD:DP:GQ:PL 0/1:136,120:256:99:3169,0,3792 19 40408857 rs4802064 T C 6094.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=54.4;QD=30.47;SOR=1.417 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6123,599,0 19 40719076 rs1129156 T C 4529.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4558,441,0 19 40719410 rs3746006 C T 2526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.623;SOR=0.748 GT:AD:DP:GQ:PL 0/1:132,111:243:99:2555,0,3269 19 40720079 rs3746005 C T 9749.77 PASS AC=2;AF=1;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.86;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,350:350:99:9778,1047,0 19 40723844 rs79666308 C T 643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=5.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.19;ReadPosRankSum=0.478;SOR=0.346 GT:AD:DP:GQ:PL 0/1:62,42:104:99:672,0,1522 19 40730558 rs143673271 G C 2705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.62;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=-1.048;SOR=0.569 GT:AD:DP:GQ:PL 0/1:97,109:206:99:2734,0,2603 19 40828026 rs138317244 C T 3544.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.189;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=1.652;SOR=0.721 GT:AD:DP:GQ:PL 0/1:171,154:325:99:3573,0,3998 19 40875800 rs3745198 C G 5326.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.14;SOR=1.437 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:40875800_C_G:5355,364,0 19 40875810 rs3745199 C G 6049.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.01;SOR=1.318 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,144:144:99:1|1:40875800_C_G:6078,436,0 19 40886223 rs56237517 G A 1725.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.185;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.422;SOR=0.491 GT:AD:DP:GQ:PL 0/1:89,74:163:99:1754,0,2125 19 40900179 rs139624657 TTCC T 584.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0;DB;DP=400;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=3.952;QD=1.8;ReadPosRankSum=-1.845;SOR=0.875 GT:AD:DP:GQ:PL 0/1:287,37:324:99:622,0,11960 19 40900865 rs268674 C T 9194.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9223,882,0 19 40929363 rs268687 T C 2019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.479;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-0.556;SOR=0.613 GT:AD:DP:GQ:PL 0/1:93,81:174:99:2048,0,2446 19 40947373 rs10560834 GGATC G 1996.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=0.961;QD=20.37;ReadPosRankSum=-0.441;SOR=0.555 GT:AD:DP:GQ:PL 0/1:46,52:98:99:2034,0,2004 19 40947448 rs2887292 A G 1990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.946;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=0.112;SOR=0.747 GT:AD:DP:GQ:PL 0/1:77,75:152:99:2019,0,1891 19 40947751 rs35314597 G A 2614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.137;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=28.707;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.511;SOR=0.481 GT:AD:DP:GQ:PL 0/1:108,118:230:99:2643,0,2591 19 41009982 rs71358911 C T 2702.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=3.69;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=1.823;SOR=0.494 GT:AD:DP:GQ:PL 0/1:121,109:230:99:2731,0,3149 19 41038574 rs814501 G A 2390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=1.141;SOR=0.561 GT:AD:DP:GQ:PL 0/1:110,106:216:99:2419,0,2784 19 41095086 . TGAGGACAGTCCTGTCCAACAGGGAGG T 1129.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DP=157;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=2.959;QD=10.36;ReadPosRankSum=-1.469;SOR=1.031 GT:AD:DP:GQ:PL 0/1:74,35:109:99:1167,0,3897 19 41096189 rs396118 A G 3198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-1.172;SOR=0.573 GT:AD:DP:GQ:PL 0/1:140,141:281:99:3227,0,3344 19 41111069 rs2303729 G A 2669.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.408;SOR=0.768 GT:AD:DP:GQ:PL 0/1:128,115:243:99:2698,0,3315 19 41116455 rs33937741 C G 2886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.229;SOR=0.831 GT:AD:DP:GQ:PL 0/1:119,121:240:99:2915,0,2843 19 41117869 rs1131620 A G 3083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.014;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.141;SOR=0.697 GT:AD:DP:GQ:PL 0/1:133,116:249:99:3112,0,3218 19 41118056 rs1051303 A G 3100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.604;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-1.033;SOR=0.682 GT:AD:DP:GQ:PL 0/1:101,120:221:99:3129,0,2483 19 41123093 rs59030801 A AG 10441.8 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.55;QD=36.26;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,288:293:99:10470,891,0 19 41128309 rs10880 C T 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.044;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-1.244;SOR=0.951 GT:AD:DP:GQ:PL 0/1:130,108:238:99:2522,0,3138 19 41129842 rs7367 C T 2272.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.01;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=-2.265;SOR=0.775 GT:AD:DP:GQ:PL 0/1:104,96:200:99:2301,0,2704 19 41173880 rs2604901 C T 7457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.639;ClippingRankSum=0;DB;DP=381;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.15;MQRankSum=6.373;QD=19.89;ReadPosRankSum=-1.54;SOR=0.693 GT:AD:DP:GQ:PL 0/1:176,199:375:99:7486,0,8189 19 41173892 rs71173669 CTGCTGT C 5449.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.5;MQ=61.41;MQRankSum=6.391;QD=15.71;ReadPosRankSum=0.892;SOR=0.745 GT:AD:DP:GQ:PL 0/1:199,148:347:99:5487,0,10803 19 41206208 rs2246095 A G 3448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=2.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=1.307;SOR=0.875 GT:AD:DP:GQ:PL 0/1:122,153:275:99:3477,0,2691 19 41211056 rs3865452 T C 6269.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6298,614,0 19 41255500 rs2254343 C G 8971.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.27;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,278:278:99:9000,834,0 19 41349874 rs143731390 T A 427.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.786;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=16.709;MLEAC=1;MLEAF=0.5;MQ=37.75;MQRankSum=-0.729;QD=1.54;ReadPosRankSum=-1.694;SOR=2.075 GT:AD:DP:GQ:PL 0/1:237,40:277:99:456,0,6652 19 41350664 rs1809810 A T 8708.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.8;QD=28.46;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,306:306:99:8737,914,0 19 41356281 rs1137115 T C 9329.77 PASS AC=2;AF=1;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,313:313:99:9358,938,0 19 41381647 rs12460590 A C 8706.77 PASS AC=2;AF=1;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.7;QD=32.98;SOR=1.6 GT:AD:DP:GQ:PL 1/1:0,264:264:99:8735,793,0 19 41381771 rs12462918 T A 801.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.307;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=7.841;MLEAC=1;MLEAF=0.5;MQ=37.91;MQRankSum=-2.059;QD=7.1;ReadPosRankSum=0.703;SOR=0.356 GT:AD:DP:GQ:PL 0/1:72,41:113:99:830,0,1916 19 41383153 rs2261144 A G 3057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.669;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=56.9;MQRankSum=1.521;QD=11.85;ReadPosRankSum=-1.139;SOR=0.728 GT:AD:DP:GQ:PL 0/1:132,126:258:99:3086,0,3180 19 41383217 rs2302987 T C 2948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.828;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.5;MQ=53.18;MQRankSum=-7.412;QD=10;ReadPosRankSum=-2.801;SOR=0.774 GT:AD:DP:GQ:PL 0/1:174,121:295:99:2977,0,4095 19 41383799 rs3869579 G A 3070.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.197;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=8.716;MLEAC=1;MLEAF=0.5;MQ=59.33;MQRankSum=0.567;QD=11.9;ReadPosRankSum=1.765;SOR=0.78 GT:AD:DP:GQ:PL 0/1:122,136:258:99:3099,0,3004 19 41384675 rs4079366 T C 12010.8 PASS AC=2;AF=1;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.59;QD=29.8;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,403:403:99:12039,1207,0 19 41384702 rs117539170 T C 4906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0;DB;DP=429;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.59;MQRankSum=-5.404;QD=11.49;ReadPosRankSum=-2.297;SOR=0.666 GT:AD:DP:GQ:PL 0/1:216,211:427:99:4935,0,5445 19 41386033 rs73032311 T C 3549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.66;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-1.539;QD=10.17;ReadPosRankSum=-1.894;SOR=0.678 GT:AD:DP:GQ:PL 0/1:200,149:349:99:3578,0,4977 19 41386136 rs4142867 A C 3602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.679;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.5;MQ=57.6;MQRankSum=-7.974;QD=12.34;ReadPosRankSum=-0.263;SOR=0.855 GT:AD:DP:GQ:PL 0/1:158,134:292:99:3631,0,3828 19 41386366 rs3815706 T G 4156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.311;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=9.466;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=1.718;QD=13.72;ReadPosRankSum=0.308;SOR=0.375 GT:AD:DP:GQ:PL 0/1:140,163:303:99:4185,0,3667 19 41386420 rs56081734 A C 3776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.227;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=58.87;MQRankSum=-6.921;QD=9.49;ReadPosRankSum=2.88;SOR=0.833 GT:AD:DP:GQ:PL 0/1:231,167:398:99:3805,0,5610 19 41386486 rs3815708 C A 4437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.997;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=7.576;MLEAC=1;MLEAF=0.5;MQ=57.41;MQRankSum=-12.214;QD=12.64;ReadPosRankSum=-0.515;SOR=1.071 GT:AD:DP:GQ:PGT:PID:PL 0/1:230,121:351:99:0|1:41386486_C_A:4466,0,13530 19 41386487 rs3815709 A G 4458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.219;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=7.552;MLEAC=1;MLEAF=0.5;MQ=57.38;MQRankSum=-12.202;QD=12.78;ReadPosRankSum=-1.136;SOR=1.051 GT:AD:DP:GQ:PGT:PID:PL 0/1:227,122:349:99:0|1:41386486_C_A:4487,0,13570 19 41386494 rs3815710 A C 4359.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.223;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=6.047;MLEAC=1;MLEAF=0.5;MQ=57.08;MQRankSum=-12.772;QD=12.75;ReadPosRankSum=-2.803;SOR=1.021 GT:AD:DP:GQ:PGT:PID:PL 0/1:221,121:342:99:0|1:41386486_C_A:4388,0,13336 19 41387620 rs10425150 A G 2821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.692;ClippingRankSum=0;DB;DP=367;ExcessHet=3.0103;FS=5.8;MLEAC=1;MLEAF=0.5;MQ=53.86;MQRankSum=-10.068;QD=7.73;ReadPosRankSum=-2.13;SOR=0.994 GT:AD:DP:GQ:PL 0/1:244,121:365:99:2850,0,5865 19 41387647 rs10425169 A G 3957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.739;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=3.797;MLEAC=1;MLEAF=0.5;MQ=56.08;MQRankSum=-11.306;QD=11.74;ReadPosRankSum=-0.379;SOR=0.898 GT:AD:DP:GQ:PGT:PID:PL 0/1:225,112:337:99:0|1:41387647_A_G:3986,0,8876 19 41387656 rs10425176 A T 3937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.124;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.5;MQ=56.62;MQRankSum=-12.477;QD=12.04;ReadPosRankSum=0.27;SOR=0.903 GT:AD:DP:GQ:PGT:PID:PL 0/1:216,111:327:99:0|1:41387647_A_G:3966,0,8792 19 41387669 rs10425185 A G 8908.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.24;QD=29.02;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,307:307:99:8937,920,0 19 41512792 rs4803419 C T 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-1.026;SOR=1.036 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1422,0,1618 19 41522715 rs3211371 C T 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=5.037;MLEAC=1;MLEAF=0.5;MQ=58.78;MQRankSum=-5.684;QD=10.5;ReadPosRankSum=0.955;SOR=0.742 GT:AD:DP:GQ:PL 0/1:104,89:193:99:2054,0,2472 19 41631417 rs144315434 T C 400.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=36.85;MQRankSum=-0.39;QD=9.54;ReadPosRankSum=-2.034;SOR=0.283 GT:AD:DP:GQ:PL 0/1:27,15:42:99:429,0,902 19 41700493 rs338599 G C 9652.77 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=1.11 GT:AD:DP:GQ:PL 1/1:0,328:328:99:9681,981,0 19 41703793 rs57266494 G A 3120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=3.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=2.894;SOR=0.509 GT:AD:DP:GQ:PL 0/1:145,132:277:99:3149,0,3428 19 41743861 rs7249222 A G 7249.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.85;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,208:208:99:7278,625,0 19 41759631 rs3835078 ACCC A 1820.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=19.878;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=32.51;ReadPosRankSum=-1.582;SOR=0.015 GT:AD:DP:GQ:PL 0/1:10,46:64:99:1858,0,647 19 41762525 rs2304232 A G 2247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.323;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=6.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-2.218;SOR=1.155 GT:AD:DP:GQ:PL 0/1:116,84:200:99:2276,0,3001 19 41809995 rs1056854 A G 2200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.698;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=0.103;SOR=0.499 GT:AD:DP:GQ:PL 0/1:76,84:160:99:2229,0,1845 19 41811730 rs12745 T C 3706.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=4.425 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3735,357,0 19 41825776 rs3826714 A G 742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.552;ClippingRankSum=0;DB;DP=46;ExcessHet=3.0103;FS=6.073;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.15;ReadPosRankSum=-1.187;SOR=2.035 GT:AD:DP:GQ:PL 0/1:24,22:46:99:771,0,679 19 41858921 rs1800470 G A 2397.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=3.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=2.049;SOR=0.482 GT:AD:DP:GQ:PL 0/1:89,99:188:99:2426,0,2391 19 41869392 rs2241714 T C 1908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.5;MQ=60.23;MQRankSum=2.169;QD=10.32;ReadPosRankSum=1.964;SOR=0.574 GT:AD:DP:GQ:PL 0/1:99,86:185:99:1937,0,2450 19 41889748 rs12602 T C 4149.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=-2.349;SOR=0.733 GT:AD:DP:GQ:PL 0/1:175,172:347:99:4178,0,4345 19 41903220 rs10853751 G A 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-0.066;SOR=0.757 GT:AD:DP:GQ:PL 0/1:90,80:170:99:2002,0,2368 19 41919944 rs3213861 A C 1480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-0.847;SOR=1.133 GT:AD:DP:GQ:PL 0/1:73,64:137:99:1509,0,1722 19 41928652 rs284652 C T 3745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.026;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-0.58;SOR=0.906 GT:AD:DP:GQ:PL 0/1:150,153:303:99:3774,0,3578 19 41928867 rs3217385 G GC 3825.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.224;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.355;QD=11.32;ReadPosRankSum=1.049;SOR=0.727 GT:AD:DP:GQ:PL 0/1:161,177:338:99:3863,0,4520 19 41930396 rs4674 A G 2950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.528;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=8.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.41;ReadPosRankSum=-1.222;SOR=1.223 GT:AD:DP:GQ:PL 0/1:110,110:220:99:2979,0,2507 19 41932084 rs284660 G T 4146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=-1.243;SOR=0.75 GT:AD:DP:GQ:PL 0/1:145,160:305:99:4175,0,3795 19 41932120 rs284661 C T 3514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=0.922;SOR=0.644 GT:AD:DP:GQ:PL 0/1:153,143:296:99:3543,0,4159 19 41932275 rs284662 T C 3012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.27;ReadPosRankSum=-0.623;SOR=0.728 GT:AD:DP:GQ:PL 0/1:118,109:227:99:3041,0,3535 19 41932612 rs284663 C T 2987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.851;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.307;SOR=0.696 GT:AD:DP:GQ:PL 0/1:180,136:316:99:3016,0,4754 19 41939297 rs1043413 C G 3661.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.876;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=1.629;SOR=0.811 GT:AD:DP:GQ:PL 0/1:138,142:280:99:3690,0,3368 19 41944237 rs2231940 T C 2834.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.817;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=0.91;SOR=0.705 GT:AD:DP:GQ:PL 0/1:115,122:237:99:2863,0,2560 19 42083849 rs714106 C A 5447.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5476,528,0 19 42085873 rs2302188 A G 5470.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.37;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5499,507,0 19 42132314 rs1126454 G C 1223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.675;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.251;SOR=1.057 GT:AD:DP:GQ:PL 0/1:70,53:123:99:1252,0,1589 19 42221607 rs7249230 A G 7394.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.089 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7423,707,0 19 42265866 rs28547939 C G 4920.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.94;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,112:112:99:1|1:42265866_C_G:4949,337,0 19 42265889 rs11548735 G T 5771.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.23;SOR=1.211 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,140:140:99:1|1:42265866_C_G:5800,424,0 19 42315281 rs899662 G T 627.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.055;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=4.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.09;ReadPosRankSum=-0.472;SOR=1.167 GT:AD:DP:GQ:PL 0/1:72,31:103:99:656,0,1814 19 42342319 rs2290695 A G 6086.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.202 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6115,600,0 19 42354629 rs2305809 T C 9726.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.64;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,298:298:99:9755,894,0 19 42373298 rs1366610 G A 1537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.027;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.143;SOR=0.694 GT:AD:DP:GQ:PL 0/1:66,61:127:99:1566,0,1675 19 42489516 rs2217342 A C 2128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.004;SOR=0.751 GT:AD:DP:GQ:PL 0/1:105,90:195:99:2157,0,2610 19 42558629 rs3736109 G A 1899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=9.009;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.991;SOR=1.32 GT:AD:DP:GQ:PL 0/1:94,82:176:99:1928,0,2264 19 42603776 rs1205817 A G 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.968;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=-0.363;SOR=0.84 GT:AD:DP:GQ:PL 0/1:69,74:143:99:2069,0,1636 19 42703833 rs2303652 A G 3776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.317;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-1.5;SOR=0.58 GT:AD:DP:GQ:PL 0/1:160,140:300:99:3805,0,4170 19 42713835 rs3745231 A G 3074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=-0.731;SOR=0.896 GT:AD:DP:GQ:PL 0/1:118,130:248:99:3103,0,2924 19 42728836 rs3810151 T C 2786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.396;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=1.221;SOR=0.531 GT:AD:DP:GQ:PL 0/1:121,114:235:99:2815,0,2976 19 42736267 rs851609 A G 3082.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3111,318,0 19 42799049 rs1052023 C T 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.048;SOR=0.627 GT:AD:DP:GQ:PL 0/1:113,111:224:99:2866,0,3026 19 42873171 . C T 2875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DP=260;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=2.233;SOR=0.663 GT:AD:DP:GQ:PL 0/1:139,120:259:99:2904,0,3433 19 43243217 rs12185496 A G 8848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0;DB;DP=393;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.5;MQ=59.72;MQRankSum=-4.449;QD=22.52;ReadPosRankSum=-0.136;SOR=0.642 GT:AD:DP:GQ:PGT:PID:PL 0/1:173,220:393:99:0|1:43243217_A_G:8877,0,18275 19 43243218 rs12185497 A G 8845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=59.71;MQRankSum=-4.468;QD=22.86;ReadPosRankSum=0.216;SOR=0.621 GT:AD:DP:GQ:PGT:PID:PL 0/1:171,216:387:99:0|1:43243217_A_G:8874,0,18353 19 43243238 rs11559136 A G 8356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.045;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-4.415;QD=22.9;ReadPosRankSum=0.396;SOR=0.665 GT:AD:DP:GQ:PGT:PID:PL 0/1:159,206:365:99:0|1:43243217_A_G:8385,0,18164 19 43243248 rs12185500 G A 7851.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=0.399;MLEAC=1;MLEAF=0.5;MQ=59.68;MQRankSum=-4.421;QD=22.5;ReadPosRankSum=0.992;SOR=0.663 GT:AD:DP:GQ:PGT:PID:PL 0/1:152,197:349:99:0|1:43243217_A_G:7880,0,16906 19 43382368 rs707745 T G 11245.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.505;ClippingRankSum=0;DB;DP=594;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.87;MQRankSum=-16.817;QD=19;ReadPosRankSum=-1.84;SOR=0.705 GT:AD:DP:GQ:PL 0/1:294,298:592:99:11274,0,14439 19 43382374 rs707744 C G 10962.8 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.236;ClippingRankSum=0;DB;DP=582;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.8;MQRankSum=-17.179;QD=18.97;ReadPosRankSum=-0.986;SOR=0.686 GT:AD:DP:GQ:PL 0/1:295,283:580:99:10991,0,14482 19 43420264 rs2074856 C T 5072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0;DB;DP=384;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.46;MQRankSum=-3.318;QD=13.21;ReadPosRankSum=1.47;SOR=0.681 GT:AD:DP:GQ:PL 0/1:168,216:384:99:5101,0,4072 19 43420451 rs3198831 G C 7988.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.173;ClippingRankSum=0;DB;DP=609;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.947;QD=13.14;ReadPosRankSum=-0.947;SOR=0.719 GT:AD:DP:GQ:PL 0/1:295,313:608:99:8017,0,7064 19 43433805 rs1065178 A G 7261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.685;ClippingRankSum=0;DB;DP=526;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.818;SOR=0.552 GT:AD:DP:GQ:PL 0/1:237,287:524:99:7290,0,5448 19 43439694 rs113247044 A G 7910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0;DB;DP=508;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.51;MQRankSum=-4.736;QD=15.63;ReadPosRankSum=0.371;SOR=0.67 GT:AD:DP:GQ:PL 0/1:201,305:506:99:7939,0,4987 19 43439739 rs58684857 T C 7921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.493;ClippingRankSum=0;DB;DP=504;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.5;MQ=58.1;MQRankSum=-9.324;QD=15.78;ReadPosRankSum=-0.197;SOR=0.475 GT:AD:DP:GQ:PL 0/1:208,294:502:99:7950,0,5161 19 43439793 rs7245978 G A 21210.8 PASS AC=2;AF=1;AN=2;DB;DP=590;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.99;QD=36.07;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,588:588:99:21239,1795,0 19 43439848 rs113195821 G A 6969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.239;ClippingRankSum=0;DB;DP=669;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.5;MQ=56.89;MQRankSum=-6.901;QD=10.45;ReadPosRankSum=0.812;SOR=0.758 GT:AD:DP:GQ:PL 0/1:365,302:667:99:6998,0,8338 19 43519442 rs10414166 T C 3748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.536;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=0.332;SOR=0.647 GT:AD:DP:GQ:PL 0/1:157,146:303:99:3777,0,3806 19 43575905 rs77035666 C T 5893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0;DB;DP=536;ExcessHet=3.0103;FS=4.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.007;SOR=0.782 GT:AD:DP:GQ:PL 0/1:280,254:534:99:5922,0,6867 19 43579679 rs1058086 T A 7078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.992;ClippingRankSum=0;DB;DP=592;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=-0.928;QD=11.98;ReadPosRankSum=0.802;SOR=0.579 GT:AD:DP:GQ:PL 0/1:285,306:591:99:7107,0,7010 19 43585111 rs149579909 C G 5639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0;DB;DP=484;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.75;MQRankSum=-2.376;QD=11.68;ReadPosRankSum=-1.166;SOR=0.68 GT:AD:DP:GQ:PL 0/1:258,225:483:99:5668,0,6837 19 43585325 rs7248878 G A 6747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.379;ClippingRankSum=0;DB;DP=725;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.71;MQRankSum=-7.567;QD=9.32;ReadPosRankSum=-0.912;SOR=0.665 GT:AD:DP:GQ:PL 0/1:414,310:724:99:6776,0,9949 19 43585404 rs7248679 A T 6900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0;DB;DP=430;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=0.274;QD=16.16;ReadPosRankSum=-0.418;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:230,197:427:99:0|1:43585404_A_T:6929,0,8493 19 43586664 rs3887660 C G 5175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.846;ClippingRankSum=0;DB;DP=437;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=56.09;MQRankSum=-11.741;QD=11.87;ReadPosRankSum=-1.096;SOR=0.603 GT:AD:DP:GQ:PL 0/1:229,207:436:99:5204,0,5305 19 43680215 rs199505054 C T 78.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.281;ClippingRankSum=0;DB;DP=572;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.5;MQ=52.36;MQRankSum=-7.329;QD=0.14;ReadPosRankSum=4.099;SOR=0.55 GT:AD:DP:GQ:PGT:PID:PL 0/1:529,42:571:99:0|1:43680215_C_T:107,0,25736 19 43680221 rs200537553 T G 71.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.545;ClippingRankSum=0;DB;DP=554;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.93;MQRankSum=-7.815;QD=0.13;ReadPosRankSum=3.389;SOR=0.561 GT:AD:DP:GQ:PGT:PID:PL 0/1:512,41:553:99:0|1:43680215_C_T:100,0,25559 19 43709637 rs141508635 C G 6506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.199;ClippingRankSum=0;DB;DP=540;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=57.17;MQRankSum=-9.872;QD=12.07;ReadPosRankSum=0.193;SOR=0.622 GT:AD:DP:GQ:PL 0/1:277,262:539:99:6535,0,6487 19 43709654 rs11883277 C A 10037.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.615;ClippingRankSum=0;DB;DP=541;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.3;MQRankSum=-9.904;QD=18.59;ReadPosRankSum=1.333;SOR=0.695 GT:AD:DP:GQ:PGT:PID:PL 0/1:280,260:540:99:0|1:43709654_C_A:10066,0,10969 19 43709656 rs11883278 C G 10037.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0;DB;DP=546;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.32;MQRankSum=-9.909;QD=18.42;ReadPosRankSum=1.411;SOR=0.717 GT:AD:DP:GQ:PGT:PID:PL 0/1:283,262:545:99:0|1:43709654_C_A:10066,0,10969 19 43762316 rs2072284 A C 4926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.829;ClippingRankSum=0;DB;DP=412;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.1;MQRankSum=-8.913;QD=11.99;ReadPosRankSum=-1.179;SOR=0.724 GT:AD:DP:GQ:PL 0/1:213,198:411:99:4955,0,5159 19 43763019 rs1135906 T C 3648.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.83;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=9.155;MLEAC=1;MLEAF=0.5;MQ=54.84;MQRankSum=-16.935;QD=10.76;ReadPosRankSum=-3.75;SOR=1.159 GT:AD:DP:GQ:PGT:PID:PL 0/1:236,103:339:99:0|1:43763019_T_C:3677,0,16113 19 43763023 rs1135905 A G 4037.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.508;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=6.862;MLEAC=1;MLEAF=0.5;MQ=54.88;MQRankSum=-17.004;QD=11.41;ReadPosRankSum=-4.319;SOR=1.03 GT:AD:DP:GQ:PGT:PID:PL 0/1:243,111:354:99:0|1:43763019_T_C:4066,0,16422 19 43763033 rs3180651 T A 4468.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.693;ClippingRankSum=0;DB;DP=374;ExcessHet=3.0103;FS=4.252;MLEAC=1;MLEAF=0.5;MQ=55.04;MQRankSum=-16.464;QD=11.98;ReadPosRankSum=-4.687;SOR=0.916 GT:AD:DP:GQ:PGT:PID:PL 0/1:249,124:373:99:0|1:43763019_T_C:4497,0,16506 19 43763042 rs1058281 G T 4733.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.281;ClippingRankSum=0;DB;DP=396;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.5;MQ=55.23;MQRankSum=-15.796;QD=12.01;ReadPosRankSum=-3.787;SOR=0.78 GT:AD:DP:GQ:PGT:PID:PL 0/1:257,137:394:99:0|1:43763019_T_C:4762,0,16279 19 43860192 rs71337594 T G 502.88 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.93;ClippingRankSum=0;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.54;MQRankSum=1.282;QD=31.43;ReadPosRankSum=0.696;SOR=2.712 GT:AD:DP:GQ:PL 1/1:1,15:16:16:531,16,0 19 43860251 rs199668750 G A 196.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.9;QD=39.38;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,5:5:15:1|1:43860251_G_A:225,15,0 19 43860255 rs200662237 T G 196.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.9;QD=39.38;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,5:5:15:1|1:43860251_G_A:225,15,0 19 43865316 rs200660811 C G 862.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.526;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.5;MQ=27.65;MQRankSum=1.078;QD=26.14;ReadPosRankSum=1.185;SOR=0.096 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,22:33:99:0|1:43865316_C_G:891,0,1575 19 43865319 . CCT C 976.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.636;ClippingRankSum=0;DP=35;ExcessHet=3.0103;FS=5.453;MLEAC=1;MLEAF=0.5;MQ=27.61;MQRankSum=1.094;QD=27.91;ReadPosRankSum=0.533;SOR=0.116 GT:AD:DP:GQ:PGT:PID:PL 0/1:11,24:35:99:0|1:43865316_C_G:1014,0,1625 19 43865324 . A AAG 1046.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DP=36;ExcessHet=3.0103;FS=5.553;MLEAC=1;MLEAF=0.5;MQ=27.59;MQRankSum=1.077;QD=29.08;ReadPosRankSum=0.587;SOR=0.099 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,24:36:99:0|1:43865316_C_G:1084,0,1619 19 43865333 rs201266439 G A 1037.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.744;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=5.461;MLEAC=1;MLEAF=0.5;MQ=27.93;MQRankSum=1.282;QD=25.94;ReadPosRankSum=-0.419;SOR=0.111 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,27:40:99:0|1:43865316_C_G:1066,0,1647 19 43865499 rs71339512 T C 3716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.226;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.5;MQ=40.23;MQRankSum=-2.397;QD=12.95;ReadPosRankSum=0.412;SOR=0.55 GT:AD:DP:GQ:PL 0/1:133,154:287:99:3745,0,2833 19 43865692 rs61625631 G A 3992.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-7.814;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=77.215;MLEAC=1;MLEAF=0.5;MQ=47.31;MQRankSum=7.942;QD=21.7;ReadPosRankSum=1.162;SOR=0.001 GT:AD:DP:GQ:PL 0/1:35,149:184:99:4021,0,538 19 43922061 rs3816438 A G 2341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.095;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.678;SOR=0.649 GT:AD:DP:GQ:PL 0/1:95,101:196:99:2370,0,2075 19 43922300 rs2278834 G A 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.433;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=1.806;SOR=0.76 GT:AD:DP:GQ:PL 0/1:72,60:132:99:1480,0,1820 19 44047550 rs3547 T C 1907.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.77;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1936,185,0 19 44047825 rs2307177 T G 1531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.87;ReadPosRankSum=0.009;SOR=0.649 GT:AD:DP:GQ:PGT:PID:PL 0/1:41,62:103:99:0|1:44047825_T_G:1560,0,1005 19 44047826 rs2682557 T A 4077.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.37;SOR=0.884 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,101:101:99:1|1:44047825_T_G:4106,310,0 19 44055726 rs25487 T C 1507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.067;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=3.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.15;ReadPosRankSum=-1.547;SOR=0.75 GT:AD:DP:GQ:PL 0/1:112,73:185:99:1536,0,2670 19 44057227 rs915927 T C 1903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.822;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.155;SOR=0.822 GT:AD:DP:GQ:PL 0/1:86,83:169:99:1932,0,1930 19 44079611 rs2307187 G A 1566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.06;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.27;ReadPosRankSum=0.264;SOR=0.457 GT:AD:DP:GQ:PL 0/1:74,65:139:99:1595,0,1920 19 44081288 rs2682585 A G 5076.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.281 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5105,479,0 19 44081433 rs113689452 A G 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.809;QD=17.25;ReadPosRankSum=0.425;SOR=0.599 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,74:153:99:0|1:44081433_A_G:2668,0,2921 19 44082791 rs12608635 T C 1733.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.432;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.85;ReadPosRankSum=0.352;SOR=0.607 GT:AD:DP:GQ:PL 0/1:114,82:196:99:1762,0,2624 19 44098963 rs304725 C G 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.302;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.26;ReadPosRankSum=1.175;SOR=0.97 GT:AD:DP:GQ:PL 0/1:61,63:124:99:1796,0,1498 19 44099044 rs370694283 C G 1957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=1.524;SOR=0.869 GT:AD:DP:GQ:PL 0/1:61,76:137:99:1986,0,1480 19 44111890 rs11553724 C T 3412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.752;ClippingRankSum=0;DB;DP=373;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=2.4;SOR=0.708 GT:AD:DP:GQ:PL 0/1:194,142:336:99:3441,0,5310 19 44116956 rs13343696 A G 3615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.415;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=2.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.52;ReadPosRankSum=-1.563;SOR=0.536 GT:AD:DP:GQ:PL 0/1:107,126:233:99:3644,0,2806 19 44118191 rs34163641 G A 2677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.736;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=2.011;SOR=0.581 GT:AD:DP:GQ:PL 0/1:115,104:219:99:2706,0,2980 19 44153100 rs4760 A G 1252.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=1.366;SOR=0.739 GT:AD:DP:GQ:PL 0/1:77,58:135:99:1281,0,1968 19 44302624 rs349053 T C 2961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.442;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=-0.522;SOR=0.643 GT:AD:DP:GQ:PL 0/1:98,108:206:99:2990,0,2329 19 44303066 rs11547806 C G 2981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.684;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=7.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=-0.349;SOR=0.82 GT:AD:DP:GQ:PL 0/1:125,123:248:99:3010,0,2883 19 44351694 rs2195980 C T 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.257;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.443;SOR=0.577 GT:AD:DP:GQ:PL 0/1:109,100:209:99:2294,0,3071 19 44351836 rs957569 G A 1799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.749;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-1.03;QD=12.86;ReadPosRankSum=1.864;SOR=0.755 GT:AD:DP:GQ:PL 0/1:73,67:140:99:1828,0,2265 19 44352639 rs1061768 G A 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.91;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=2.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.541;SOR=0.913 GT:AD:DP:GQ:PL 0/1:80,59:139:99:1546,0,2111 19 44352665 rs2356437 T C 1646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.282;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-0.953;SOR=0.913 GT:AD:DP:GQ:PL 0/1:85,62:147:99:1675,0,2069 19 44377357 rs239942 C T 3865.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3894,372,0 19 44377669 rs12977303 G A 3857.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3886,398,0 19 44417575 rs417699 A G 5194.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.026 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5223,513,0 19 44418077 rs407731 C T 6572.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6601,646,0 19 44418343 rs406968 C T 6785.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6814,662,0 19 44418544 rs425221 A G 7843.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.899;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=3.243;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.5;ReadPosRankSum=1.145;SOR=0.406 GT:AD:DP:GQ:PL 1/1:1,248:249:99:7872,735,0 19 44418680 rs388685 G C 10079.8 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.26;SOR=0.81 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,233:233:99:1|1:44418680_G_C:10108,710,0 19 44418693 rs388706 T C 9827.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.68;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,225:225:99:1|1:44418680_G_C:9856,680,0 19 44418824 rs399098 C T 6973.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,223:223:99:7002,668,0 19 44419030 rs420242 A G 6482.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6511,648,0 19 44470189 rs454301 T A 7372.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.51;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7401,702,0 19 44470420 rs439676 T C 5268.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.44;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,153:153:99:5297,459,0 19 44470548 rs453640 A G 8026.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,258:258:99:8055,772,0 19 44470663 rs435590 G C 7256.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.69;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7285,687,0 19 44471209 rs365745 T A 6151.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6180,606,0 19 44471323 rs366111 G A 6468.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6497,636,0 19 44494215 rs381983 T C 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.006;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.96;ReadPosRankSum=-0.057;SOR=0.629 GT:AD:DP:GQ:PL 0/1:32,57:89:99:1449,0,640 19 44496070 rs431509 A G 1317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.159;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=5.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-0.368;SOR=0.875 GT:AD:DP:GQ:PL 0/1:71,55:126:99:1346,0,1751 19 44500478 rs398235 A T 7064.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.48;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,211:211:99:7093,634,0 19 44500761 rs448921 G A 9739.77 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=29.88;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,326:326:99:9768,978,0 19 44501116 rs388812 A G 7876.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=0.803 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7905,740,0 19 44501227 rs388471 A G 8900.77 PASS AC=2;AF=1;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,280:280:99:8929,838,0 19 44501518 rs446016 G A 2598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.011;SOR=0.581 GT:AD:DP:GQ:PL 0/1:129,109:238:99:2627,0,3359 19 44501627 rs35292176 T C 1127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.632;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.516;SOR=0.582 GT:AD:DP:GQ:PL 0/1:58,42:100:99:1156,0,1596 19 44511223 rs424147 T G 2520.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2549,251,0 19 44535999 rs7258517 G T 1557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.515;SOR=0.61 GT:AD:DP:GQ:PL 0/1:78,69:147:99:1586,0,2095 19 44564981 rs3826941 G A 1437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.292;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-0.659;SOR=0.607 GT:AD:DP:GQ:PL 0/1:82,65:147:99:1466,0,1918 19 44570393 rs6509138 C A 1953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.4;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=6.85;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.3;ReadPosRankSum=-1.066;SOR=0.523 GT:AD:DP:GQ:PL 0/1:123,87:210:99:1982,0,3488 19 44570551 rs4375771 G A 3557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=4.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.88;ReadPosRankSum=0.61;SOR=0.765 GT:AD:DP:GQ:PL 0/1:170,157:327:99:3586,0,4335 19 44571154 rs4433920 T C 6965.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6994,639,0 19 44585159 rs4803674 T A 4102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.252;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.8;SOR=0.686 GT:AD:DP:GQ:PL 0/1:156,175:331:99:4131,0,3567 19 44589999 rs139900131 TCTC T 3687.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.95;ReadPosRankSum=0.989;SOR=0.831 GT:AD:DP:GQ:PL 0/1:74,94:168:99:3725,0,3512 19 44590558 rs7255701 C T 2602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.54;ReadPosRankSum=-1.218;SOR=0.708 GT:AD:DP:GQ:PL 0/1:77,102:179:99:2631,0,1858 19 44591360 rs8113249 G A 5461.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.87;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5490,584,0 19 44610665 rs2068061 A G 5684.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5713,554,0 19 44610798 rs4239529 A T 6749.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6778,653,0 19 44611066 rs7508149 T C 11290.8 PASS AC=2;AF=1;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,349:349:99:11319,1046,0 19 44611420 rs4508518 A G 7429.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7458,677,0 19 44612005 rs3746321 A G 10271.8 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.9;SOR=0.8 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,234:234:99:1|1:44612005_A_G:10300,716,0 19 44612014 rs3200505 A T 10181.8 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.66;SOR=0.842 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,228:228:99:1|1:44612005_A_G:10210,704,0 19 44612231 rs3746319 A G 7125.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,234:234:99:7154,703,0 19 44652954 rs2293587 G A 7393.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7422,753,0 19 44660967 rs12609635 A G 6509.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=33.04;SOR=0.952 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6538,590,0 19 44662274 rs35483237 T TA 1577.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=0.375;QD=22.87;ReadPosRankSum=1.468;SOR=0.534 GT:AD:DP:GQ:PL 1/1:8,61:80:56:1579,56,0 19 44778405 rs1233428 A C 8269.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,259:259:99:8298,776,0 19 44778795 rs59660444 CG C 5342.73 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.52;SOR=1.476 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:44778795_CG_C:5380,361,0 19 44778797 rs2884015 T A 5351.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.6;SOR=1.476 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:44778795_CG_C:5380,361,0 19 44778799 rs2884016 G A 5351.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.35;SOR=1.437 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:44778795_CG_C:5380,361,0 19 44792969 rs2609908 G A 3102.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3131,303,0 19 44831989 rs2609881 T G 8041.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=6.707;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.29;ReadPosRankSum=-0.791;SOR=0.405 GT:AD:DP:GQ:PL 1/1:2,255:257:99:8070,697,0 19 44832684 rs2609880 T G 7368.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.952;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.13;ReadPosRankSum=-0.807;SOR=0.701 GT:AD:DP:GQ:PL 1/1:2,251:253:99:7397,707,0 19 44832875 rs2722722 A G 5217.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.21;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,162:162:99:5246,485,0 19 44832992 rs2722723 C G 5322.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.9;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,157:157:99:5351,470,0 19 44833506 rs4325673 C T 5435.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5464,513,0 19 44833851 rs4280359 G C 6728.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6757,636,0 19 44840789 rs2571104 T C 2693.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.848 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2722,285,0 19 44890697 rs1836280 A G 2379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.534;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.5;MQ=58.77;MQRankSum=-4.023;QD=12.93;ReadPosRankSum=1.327;SOR=0.738 GT:AD:DP:GQ:PL 0/1:93,91:184:99:2408,0,2233 19 44890801 rs12610859 T C 2134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.602;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.5;MQ=58.8;MQRankSum=-3.889;QD=12.56;ReadPosRankSum=3.751;SOR=0.791 GT:AD:DP:GQ:PL 0/1:86,84:170:99:2163,0,2202 19 44891784 rs2571089 T C 6218.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6247,588,0 19 44896487 rs2571123 G C 8584.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,281:281:99:8613,842,0 19 44932972 rs1434579 C T 3503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.106;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.96;ReadPosRankSum=1.382;SOR=0.589 GT:AD:DP:GQ:PL 0/1:154,139:293:99:3532,0,3752 19 44933947 rs12151338 G A 3448.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.481;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.1;ReadPosRankSum=-0.092;SOR=0.709 GT:AD:DP:GQ:PL 0/1:142,143:285:99:3477,0,3408 19 44934489 rs2571174 G A 8867.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,305:305:99:8896,914,0 19 45004305 rs12977470 G C 4897.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.951 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4926,489,0 19 45016116 rs8100718 A G 830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.23;ReadPosRankSum=0.521;SOR=0.828 GT:AD:DP:GQ:PL 0/1:52,38:90:99:859,0,1316 19 45016990 rs5828200 CT C 3882.73 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=36.98;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3920,316,0 19 45024581 rs12982449 C G 3120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.235;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=-1.86;SOR=0.705 GT:AD:DP:GQ:PL 0/1:111,134:245:99:3149,0,2441 19 45028112 rs35443082 T C 2478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.31;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=1.087;SOR=0.724 GT:AD:DP:GQ:PL 0/1:94,104:198:99:2507,0,2180 19 45028169 rs7260180 C T 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.85;ReadPosRankSum=0.512;SOR=0.846 GT:AD:DP:GQ:PL 0/1:111,78:189:99:1700,0,2752 19 45033485 rs62116895 A G 1105.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=2.674;SOR=0.74 GT:AD:DP:GQ:PL 0/1:50,50:100:99:1134,0,1183 19 45126994 rs846857 A G 3773.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.4;SOR=1.695 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3802,338,0 19 45162038 rs203710 A G 3441.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3470,339,0 19 45322744 rs1135062 A G 5749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0;DB;DP=404;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=-2.953;SOR=0.799 GT:AD:DP:GQ:PL 0/1:179,223:402:99:5778,0,4425 19 45375413 rs71352236 G A 1562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.666;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=-0.453;SOR=0.76 GT:AD:DP:GQ:PL 0/1:93,63:156:99:1591,0,2394 19 45389224 rs283814 A G 3905.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3934,394,0 19 45395714 rs157581 T C 1508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.762;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=0.528;SOR=0.761 GT:AD:DP:GQ:PL 0/1:54,59:113:99:1537,0,1176 19 45396144 rs11556505 C T 1385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.36;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-1.159;SOR=0.565 GT:AD:DP:GQ:PL 0/1:69,66:135:99:1414,0,1607 19 45411941 rs429358 T C 3828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.576;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=2.379;SOR=0.694 GT:AD:DP:GQ:PL 0/1:152,156:308:99:3857,0,3639 19 45412079 . C . . PASS . GT:DP:GQ:MIN_DP:PL 0/0:289:99:38:0,99,1485 19 45448036 rs1132899 T C 7587.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.004 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7616,764,0 19 45448465 rs5167 T G 2201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=2.992;SOR=0.606 GT:AD:DP:GQ:PL 0/1:107,98:205:99:2230,0,2488 19 45476422 rs204481 T C 6655.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6684,648,0 19 45488567 rs204471 T C 2472.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2501,263,0 19 45490570 rs3786505 A G 2995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.814;SOR=0.859 GT:AD:DP:GQ:PL 0/1:108,122:230:99:3024,0,2740 19 45490636 rs204468 T C 2824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.074;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=0.88;SOR=0.756 GT:AD:DP:GQ:PL 0/1:112,119:231:99:2853,0,2506 19 45495668 rs2075618 G C 2006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.317;SOR=0.722 GT:AD:DP:GQ:PL 0/1:92,84:176:99:2035,0,2159 19 45561063 rs4803794 A G 6649.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6678,684,0 19 45596635 rs75282681 A G 2558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.632;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=5.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=0.653;SOR=0.984 GT:AD:DP:GQ:PL 0/1:116,107:223:99:2587,0,2631 19 45645553 rs112401916 G A 2799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=0.522;SOR=0.57 GT:AD:DP:GQ:PL 0/1:106,117:223:99:2828,0,2703 19 45655647 rs117934605 G T 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.259;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.487;SOR=0.717 GT:AD:DP:GQ:PL 0/1:101,89:190:99:2359,0,2582 19 45801018 rs173179 T C 6801.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.976 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6830,665,0 19 45810035 rs4884 A G 5466.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5495,530,0 19 45818835 rs1133190 A G 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.833;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.183;SOR=0.849 GT:AD:DP:GQ:PL 0/1:101,86:187:99:2159,0,2428 19 45854919 rs13181 T G 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.617;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.91;ReadPosRankSum=1.759;SOR=0.958 GT:AD:DP:GQ:PL 0/1:65,69:134:99:1892,0,1682 19 45867259 rs1799793 C T 3395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.826;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-2.007;QD=12.48;ReadPosRankSum=1.907;SOR=0.785 GT:AD:DP:GQ:PL 0/1:136,136:272:99:3424,0,3346 19 45868309 rs238406 T G 3275.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.43;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3304,302,0 19 45912002 rs735482 A C 4794.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.07;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4823,435,0 19 45912343 rs762562 A G 6796.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6825,656,0 19 45912406 rs2336219 G A 5474.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.81;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5503,564,0 19 45918245 rs41558212 G A 623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=5.435;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.677;SOR=0.275 GT:AD:DP:GQ:PL 0/1:24,31:55:99:652,0,554 19 45923653 rs11615 A G 2306.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.2;ReadPosRankSum=-0.488;SOR=0.377 GT:AD:DP:GQ:PL 1/1:1,78:79:99:2335,196,0 19 45971961 rs2282695 C G 1598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.77;SOR=0.696 GT:AD:DP:GQ:PL 0/1:84,66:150:99:1627,0,2131 19 46002456 rs3745821 G T 4102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.023;SOR=0.735 GT:AD:DP:GQ:PL 0/1:140,165:305:99:4131,0,3360 19 46024584 rs2301283 T G 1278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=-0.149;SOR=0.473 GT:AD:DP:GQ:PL 0/1:92,63:155:99:1307,0,2237 19 46026970 rs11880111 T A 2087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.604;SOR=0.631 GT:AD:DP:GQ:PL 0/1:111,95:206:99:2116,0,2565 19 46057081 rs3826860 A G 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.968;SOR=0.646 GT:AD:DP:GQ:PL 0/1:107,82:189:99:2029,0,2749 19 46145025 rs2286756 G T 4416.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.46;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4445,433,0 19 46181392 rs1800437 G C 1650.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.477;SOR=0.574 GT:AD:DP:GQ:PL 0/1:105,72:177:99:1679,0,2815 19 46202172 rs2287019 C T 1676.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.022;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=0.187;SOR=0.724 GT:AD:DP:GQ:PL 0/1:87,80:167:99:1705,0,1944 19 46205050 rs4803848 T C 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.183;SOR=0.672 GT:AD:DP:GQ:PL 0/1:50,42:92:99:901,0,1242 19 46206262 rs17850756 G A 2902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=2.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.417;SOR=0.854 GT:AD:DP:GQ:PL 0/1:142,132:274:99:2931,0,3492 19 46268902 rs2341097 C T 3742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.439;SOR=0.778 GT:AD:DP:GQ:PL 0/1:152,159:311:99:3771,0,3911 19 46269076 rs2014576 G A 3961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=0.367;SOR=0.664 GT:AD:DP:GQ:PL 0/1:214,172:386:99:3990,0,5288 19 46269313 rs2014377 G C 6950.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,232:232:99:6979,696,0 19 46281745 rs1799894 A G 2485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=1.083;SOR=0.564 GT:AD:DP:GQ:PL 0/1:78,101:179:99:2514,0,1882 19 46287897 . A G 813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.503;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-0.283;SOR=1.292 GT:AD:DP:GQ:PL 0/1:49,32:81:99:842,0,1225 19 46289392 rs8110017 G C 7959.77 PASS AC=2;AF=1;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7988,774,0 19 46289503 rs8109951 C T 3370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=1.963;SOR=0.731 GT:AD:DP:GQ:PGT:PID:PL 0/1:120,141:261:99:0|1:46289503_C_T:3399,0,4626 19 46289509 rs11545326 G A 2837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-2.847;SOR=0.714 GT:AD:DP:GQ:PGT:PID:PL 0/1:144,123:267:99:1|0:46289503_C_T:2866,0,5617 19 46317768 . T A 86.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.214;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=61.399;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.71;ReadPosRankSum=-0.345;SOR=5.993 GT:AD:DP:GQ:PGT:PID:PL 0/1:103,19:122:99:0|1:46317761_G_C:115,0,4560 19 46317771 . T A 83.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.196;ClippingRankSum=0;DP=132;ExcessHet=3.0103;FS=60.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.64;ReadPosRankSum=-0.021;SOR=5.993 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,19:131:99:0|1:46317761_G_C:112,0,4593 19 46318963 rs3810331 C A 6777.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6806,665,0 19 46319415 rs1132645 G C 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.87;ReadPosRankSum=1.072;SOR=0.732 GT:AD:DP:GQ:PL 0/1:93,65:158:99:1587,0,2652 19 46320041 rs74821481 G T 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.536;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-1.7;SOR=0.731 GT:AD:DP:GQ:PL 0/1:70,64:134:99:1535,0,2057 19 46338492 rs7256192 G A 780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.384;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=8.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.23;ReadPosRankSum=-0.836;SOR=1.53 GT:AD:DP:GQ:PL 0/1:73,35:108:99:809,0,1977 19 46387344 rs11550348 G A 2367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=0.82;SOR=0.757 GT:AD:DP:GQ:PL 0/1:88,91:179:99:2396,0,2411 19 46387503 rs3745926 T C 2949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.005;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=2.037;SOR=0.579 GT:AD:DP:GQ:PL 0/1:113,108:221:99:2978,0,2842 19 46394100 rs142323830 C T 1850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.214;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.003;SOR=0.588 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1879,0,2154 19 46394322 rs114387602 G A 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.363;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.52;ReadPosRankSum=-1.722;SOR=1.055 GT:AD:DP:GQ:PL 0/1:48,46:94:99:1487,0,1607 19 46404579 rs10423899 A G 6669.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.051;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27;ReadPosRankSum=1.251;SOR=1.083 GT:AD:DP:GQ:PL 1/1:2,245:247:99:6698,674,0 19 46443739 rs28742045 T G 8985.77 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=31.2;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,288:288:99:9014,863,0 19 46443886 rs1047061 C A 7804.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7833,771,0 19 46511548 rs2287305 T C 2448.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.01;SOR=1.885 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2477,213,0 19 46519335 . C T 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.309;ClippingRankSum=0;DP=194;ExcessHet=3.0103;FS=4.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.77;ReadPosRankSum=0.14;SOR=1.037 GT:AD:DP:GQ:PL 0/1:122,71:193:99:1720,0,3004 19 46520026 rs2287306 A G 7595.77 PASS AC=2;AF=1;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.72;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,274:274:99:7624,819,0 19 46526047 . C T 2403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0;DP=227;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.68;ReadPosRankSum=-0.836;SOR=0.557 GT:AD:DP:GQ:PL 0/1:121,104:225:99:2432,0,3009 19 46526298 rs2072562 T G 5110.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.595 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5139,476,0 19 46627592 rs2287307 G A 2347.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2376,248,0 19 46811984 rs2311054 A G 4563.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4592,488,0 19 46815499 rs8101480 T C 6534.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6563,660,0 19 46823702 rs3764609 A G 1412.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.82;ReadPosRankSum=-0.765;SOR=0.303 GT:AD:DP:GQ:PL 0/1:28,56:84:99:1441,0,657 19 46823751 rs3764610 C T 1742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=1.55;SOR=0.412 GT:AD:DP:GQ:PL 0/1:64,74:138:99:1771,0,1602 19 46914921 rs34186470 G A 3765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0;DB;DP=410;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0;QD=9.28;ReadPosRankSum=-1.627;SOR=0.928 GT:AD:DP:GQ:PL 0/1:237,169:406:99:3794,0,6279 19 47030234 rs62136886 T C 2181.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.69;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.5;MQ=50.16;MQRankSum=-13.559;QD=7.6;ReadPosRankSum=-2.396;SOR=0.733 GT:AD:DP:GQ:PL 0/1:200,87:287:99:2210,0,5251 19 47124714 rs2229129 T G 10711.8 PASS AC=2;AF=1;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.833 GT:AD:DP:GQ:PL 1/1:0,349:349:99:10740,1047,0 19 47127324 rs2229128 C G 3426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.016;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=0.682;SOR=0.691 GT:AD:DP:GQ:PL 0/1:117,123:240:99:3455,0,3097 19 47137481 rs3833245 GAT G 3915.73 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.7;QD=43.03;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3953,273,0 19 47152941 . G T 2580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-1.633;SOR=0.71 GT:AD:DP:GQ:PL 0/1:99,105:204:99:2609,0,2631 19 47153145 rs375074031 CA C 1335.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.778;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=3.87;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.729;QD=10.69;ReadPosRankSum=0.75;SOR=1.018 GT:AD:DP:GQ:PL 0/1:58,67:171:99:1373,0,1017 19 47177913 rs314665 A G 8445.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.927 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8474,819,0 19 47193850 rs314671 T C 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.77;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=-0.284;SOR=0.548 GT:AD:DP:GQ:PL 0/1:67,63:130:99:1475,0,1507 19 47207654 rs11083846 G A 3906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.278;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=0.393;SOR=0.831 GT:AD:DP:GQ:PL 0/1:174,153:327:99:3935,0,4593 19 47217113 rs12461666 C T 1281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.57;ReadPosRankSum=-0.437;SOR=0.605 GT:AD:DP:GQ:PL 0/1:70,64:134:99:1310,0,1801 19 47249707 rs1693994 T C 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=5.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=-0.142;SOR=0.285 GT:AD:DP:GQ:PL 0/1:32,31:63:99:711,0,852 19 47278859 rs3027961 C G 2704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.412;SOR=0.604 GT:AD:DP:GQ:PL 0/1:106,109:215:99:2733,0,2852 19 47287405 rs3027958 T C 1267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.963;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.43;ReadPosRankSum=1.167;SOR=1.036 GT:AD:DP:GQ:PL 0/1:50,52:102:99:1296,0,1077 19 47291174 rs3027956 G C 2468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.12;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=10.176;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.27;ReadPosRankSum=1.499;SOR=1.098 GT:AD:DP:GQ:PL 0/1:81,92:176:99:2497,0,1997 19 47342867 rs312185 A C 5769.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.6;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5798,530,0 19 47543774 rs3745615 G A 2825.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2854,293,0 19 47548678 rs889169 G A 10902.8 PASS AC=2;AF=1;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,367:367:99:10931,1101,0 19 47570199 rs202213560 G A 5735.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=-1.245;SOR=0.656 GT:AD:DP:GQ:PL 0/1:208,227:435:99:5764,0,5333 19 47585517 rs7250850 G C 3484.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.44;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3513,380,0 19 47588325 rs2287842 G A 2479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.286;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.29;SOR=0.459 GT:AD:DP:GQ:PL 0/1:121,106:227:99:2508,0,2762 19 47761646 rs12985905 G C 2438.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2467,243,0 19 47768128 rs2032811 G C 3094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=-0.383;SOR=0.877 GT:AD:DP:GQ:PL 0/1:135,125:260:99:3123,0,3446 19 47770015 rs10413121 A C 1960.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.429;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.6;ReadPosRankSum=-0.964;SOR=0.628 GT:AD:DP:GQ:PL 0/1:101,84:185:99:1989,0,2383 19 47773647 rs73061366 C T 815.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.16;ReadPosRankSum=-2.054;SOR=0.623 GT:AD:DP:GQ:PL 0/1:61,39:100:99:844,0,1627 19 47774447 rs66726054 G A 1831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=1.755;SOR=0.714 GT:AD:DP:GQ:PL 0/1:101,86:187:99:1860,0,2493 19 47774572 rs60930438 C T 1818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=-0.671;SOR=0.704 GT:AD:DP:GQ:PL 0/1:124,79:203:99:1847,0,3217 19 47774665 rs373093080 TGAG T 3513.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.218;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=4.784;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=2.697;QD=16.97;ReadPosRankSum=-0.416;SOR=0.999 GT:AD:DP:GQ:PL 0/1:112,95:207:99:3551,0,5174 19 47774772 rs888836 T C 2582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.458;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=2.541;QD=10.67;ReadPosRankSum=-0.235;SOR=0.732 GT:AD:DP:GQ:PL 0/1:124,118:242:99:2611,0,3170 19 47778221 rs10407367 A C 2354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.675;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=11.202;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=-1.726;QD=11.83;ReadPosRankSum=0.299;SOR=0.295 GT:AD:DP:GQ:PL 0/1:100,99:199:99:2383,0,2387 19 47813165 rs11670330 G A 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.289;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=0.06;SOR=0.735 GT:AD:DP:GQ:PL 0/1:62,43:105:99:1022,0,1416 19 47823038 rs4467185 G A 2308.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=1.81 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2337,219,0 19 47823484 rs4804049 T C 7095.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7124,692,0 19 47823871 rs11880097 G T 5432.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=0.704 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5461,549,0 19 47933728 rs8104926 A G 3802.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.908 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3831,393,0 19 47944710 rs2254560 T C 736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.668;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.9;ReadPosRankSum=-0.288;SOR=0.656 GT:AD:DP:GQ:PL 0/1:24,29:53:99:765,0,570 19 47980153 rs2293424 G A 2087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=2.364;SOR=0.507 GT:AD:DP:GQ:PL 0/1:82,88:170:99:2116,0,1960 19 48182568 rs2911005 C T 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.547;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=9.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.315;SOR=1.572 GT:AD:DP:GQ:PL 0/1:51,49:100:99:1275,0,1231 19 48182946 rs2911006 T C 2895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.248;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=0.345;SOR=0.743 GT:AD:DP:GQ:PL 0/1:120,114:234:99:2924,0,2884 19 48183114 rs2914438 A G 2166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=5.42;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.65;SOR=0.412 GT:AD:DP:GQ:PL 0/1:88,85:173:99:2195,0,2255 19 48184547 rs889337 G A 1935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.19;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.374;QD=12.57;ReadPosRankSum=1.326;SOR=0.72 GT:AD:DP:GQ:PL 0/1:74,80:154:99:1964,0,1601 19 48244194 rs7255434 A G 3574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.366;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.043;QD=12.59;ReadPosRankSum=-0.443;SOR=0.801 GT:AD:DP:GQ:PL 0/1:147,137:284:99:3603,0,3453 19 48244401 rs35910701 G A 3446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.4;ReadPosRankSum=0.168;SOR=0.588 GT:AD:DP:GQ:PL 0/1:140,138:278:99:3475,0,3756 19 48244569 rs3745758 G A 3583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.445;QD=11.75;ReadPosRankSum=-0.847;SOR=0.793 GT:AD:DP:GQ:PL 0/1:155,150:305:99:3612,0,3879 19 48244692 rs3833256 C CG 2799.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=6.786;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.522;QD=13.33;ReadPosRankSum=-0.605;SOR=1.14 GT:AD:DP:GQ:PL 0/1:112,98:210:99:2837,0,3263 19 48255804 rs1042558 A G 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.7;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.29;ReadPosRankSum=0.632;SOR=0.446 GT:AD:DP:GQ:PL 0/1:68,36:104:99:682,0,1591 19 48258717 rs1804994 A G 2266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-1.609;SOR=0.62 GT:AD:DP:GQ:PL 0/1:94,102:196:99:2295,0,2222 19 48258772 rs11083895 G A 2307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.425;SOR=0.87 GT:AD:DP:GQ:PL 0/1:96,96:192:99:2336,0,2265 19 48282077 rs111841672 C CGCAGCGG 2857.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.41;ReadPosRankSum=0.082;SOR=0.719 GT:AD:DP:GQ:PL 0/1:62,78:140:99:2895,0,5134 19 48284025 rs34362700 C CG 1949.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.55;ReadPosRankSum=-0.987;SOR=0.831 GT:AD:DP:GQ:PL 0/1:57,77:134:99:1987,0,1373 19 48305638 . TGGGCCTGGGATC T 7765.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.387;ClippingRankSum=0;DP=635;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.5;MQ=61.05;MQRankSum=10.74;QD=14.74;ReadPosRankSum=0.551;SOR=0.706 GT:AD:DP:GQ:PL 0/1:311,216:529:99:7803,0,13780 19 48389425 rs11083907 A G 3965.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.74;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3994,387,0 19 48495304 rs60213124 G A 787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=2.001;SOR=0.481 GT:AD:DP:GQ:PL 0/1:48,40:88:99:816,0,1100 19 48519241 rs3745751 C G 1854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=4.222;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=0.753;SOR=0.783 GT:AD:DP:GQ:PL 0/1:104,83:187:99:1883,0,2671 19 48525507 rs2303690 G A 4932.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.35;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,174:174:99:4961,521,0 19 48533856 rs35063174 A G 697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.279;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.31;ReadPosRankSum=-1.345;SOR=0.914 GT:AD:DP:GQ:PL 0/1:54,30:84:99:726,0,1488 19 48537585 rs3745746 A G 1647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.367;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=2.138;SOR=0.68 GT:AD:DP:GQ:PL 0/1:79,65:144:99:1676,0,1895 19 48543862 rs8105198 G A 5365.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5394,546,0 19 48543923 rs12982629 C A 2210.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=-1.729;SOR=0.718 GT:AD:DP:GQ:PL 0/1:87,93:180:99:2239,0,2121 19 48558286 rs2307281 G A 1758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.689;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=0.814;SOR=0.824 GT:AD:DP:GQ:PL 0/1:64,72:136:99:1787,0,1691 19 48598823 rs156631 A G 3232.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3261,326,0 19 48601454 rs251684 T C 3688.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=29.75;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3717,371,0 19 48601528 rs251683 G T 3100.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=27.93;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3129,333,0 19 48602948 rs2303744 T C 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=-1.92;SOR=0.462 GT:AD:DP:GQ:PL 0/1:61,47:108:99:1069,0,1522 19 48613788 rs138501838 T TGCTCCGGAATCCGGTGCGGAGGCTTGG 2844.73 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.59;QD=44.45;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2882,185,0 19 48621036 rs13436 C G 5535.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=1.516 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5564,522,0 19 48622427 rs20581 A G 3610.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3639,372,0 19 48634319 rs392891 T A 2577.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.02;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2606,276,0 19 48654553 rs20580 G T 2532.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2561,259,0 19 48660243 rs3730867 GAAGGGGCA G 2607.73 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.53;QD=43.46;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2645,181,0 19 48668795 rs3730849 G A 740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0;DB;DP=48;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=1.612;SOR=0.425 GT:AD:DP:GQ:PL 0/1:15,33:48:99:769,0,333 19 48697961 rs12973411 C T 2233.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.046;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.517;SOR=0.788 GT:AD:DP:GQ:PL 0/1:132,92:224:99:2262,0,3343 19 48735017 rs140826611 C CTT 4121.73 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=41.63;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,99:99:99:4159,298,0 19 48737764 rs2288876 A G 4269.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=0.895 GT:AD:DP:GQ:PL 1/1:0,150:150:99:4298,449,0 19 48800218 rs10415825 T C 3247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.106;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=4.724;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-1.438;SOR=0.969 GT:AD:DP:GQ:PL 0/1:141,138:279:99:3276,0,3392 19 48800338 rs7252988 A G 2968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.07;ReadPosRankSum=-0.314;SOR=0.627 GT:AD:DP:GQ:PL 0/1:86,111:197:99:2997,0,2288 19 48800791 rs2292113 A G 3182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.327;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=9.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.438;SOR=0.646 GT:AD:DP:GQ:PL 0/1:111,127:238:99:3211,0,2651 19 48801414 rs8111297 G T 1930.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.688;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=1.289;SOR=0.845 GT:AD:DP:GQ:PL 0/1:125,87:212:99:1959,0,2907 19 48801426 rs8111947 T C 2138.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.356;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=3.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=-0.032;SOR=0.756 GT:AD:DP:GQ:PL 0/1:125,97:222:99:2167,0,2945 19 48806977 rs2242463 G A 1700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.438;SOR=0.668 GT:AD:DP:GQ:PL 0/1:77,72:149:99:1729,0,2066 19 48807367 rs28582401 C A 2091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.885;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=5.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-0.259;SOR=0.42 GT:AD:DP:GQ:PL 0/1:103,96:199:99:2120,0,2716 19 48833728 rs11671746 G A 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-0.387;SOR=0.763 GT:AD:DP:GQ:PL 0/1:114,86:200:99:1934,0,2823 19 48945880 rs62130268 T C 5359.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=28.97;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5388,555,0 19 48946325 rs111420822 T C 3625.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=1.777 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3654,351,0 19 48946405 rs112893228 A G 1262.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1291,129,0 19 48949286 rs1643487 G T 5157.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.419 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5186,501,0 19 48949766 rs929743 C G 3054.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3083,282,0 19 49002058 . CG C 88.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.156;ClippingRankSum=0;DP=43;ExcessHet=3.0103;FS=17.285;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.06;ReadPosRankSum=0.196;SOR=0.006 GT:AD:DP:GQ:PL 0/1:22,7:31:99:126,0,509 19 49102399 rs1132054 C T 3106.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.241;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=0.656;SOR=0.741 GT:AD:DP:GQ:PL 0/1:137,147:284:99:3135,0,3274 19 49113919 rs10853802 C A 1506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=0.192;SOR=0.728 GT:AD:DP:GQ:PL 0/1:104,65:169:99:1535,0,2707 19 49116555 rs368654 A G 3464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.435;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=9.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=1.86;SOR=0.834 GT:AD:DP:GQ:PL 0/1:150,131:281:99:3493,0,3734 19 49141406 rs137896889 AAGAC A 2550.73 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.34;QD=43.98;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2588,175,0 19 49143025 rs2303147 T C 4180.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4209,438,0 19 49164952 rs281392 A G 7567.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7596,714,0 19 49206417 rs492602 A G 2541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.366;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=0.802;QD=12.77;ReadPosRankSum=-0.035;SOR=0.843 GT:AD:DP:GQ:PL 0/1:100,99:199:99:2570,0,2448 19 49206462 rs681343 C T 2694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=55.9;MQRankSum=-1.195;QD=12.53;ReadPosRankSum=0.026;SOR=0.745 GT:AD:DP:GQ:PL 0/1:106,109:215:99:2723,0,2604 19 49206603 rs281377 C T 3717.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=4.765;MLEAC=1;MLEAF=0.5;MQ=55.09;MQRankSum=-1.751;QD=17.79;ReadPosRankSum=-0.289;SOR=0.758 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,102:209:99:0|1:49206603_C_T:3746,0,4091 19 49206625 rs1800022 C T 3414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.662;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=5.829;MLEAC=1;MLEAF=0.5;MQ=58.03;MQRankSum=-0.73;QD=16.66;ReadPosRankSum=0.22;SOR=0.957 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,93:205:99:0|1:49206603_C_T:3443,0,4206 19 49206674 rs601338 G A 3572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=2.745;QD=14.07;ReadPosRankSum=0.981;SOR=0.837 GT:AD:DP:GQ:PL 0/1:114,140:254:99:3601,0,2777 19 49206726 rs1800027 C T 2938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=3.15;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-2.762;QD=9.96;ReadPosRankSum=0.026;SOR=0.873 GT:AD:DP:GQ:PL 0/1:164,131:295:99:2967,0,4113 19 49206985 rs602662 G A 2823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.469;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.53;ReadPosRankSum=1.53;SOR=0.637 GT:AD:DP:GQ:PL 0/1:131,114:245:99:2852,0,3258 19 49207206 rs485186 A G 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.262;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.061;SOR=0.683 GT:AD:DP:GQ:PL 0/1:91,95:186:99:2314,0,2117 19 49207255 rs485073 A G 2198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.242;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=5.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.73;ReadPosRankSum=-1.293;SOR=1.23 GT:AD:DP:GQ:PGT:PID:PL 0/1:66,58:124:99:0|1:49207255_A_G:2227,0,2843 19 49207257 rs603985 T C 2198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.146;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=6.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.17;ReadPosRankSum=-1.455;SOR=1.272 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,57:121:99:0|1:49207255_A_G:2227,0,2843 19 49217261 rs281385 A G 2160.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.002;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=4.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-1.618;SOR=1.109 GT:AD:DP:GQ:PL 0/1:80,80:160:99:2189,0,1986 19 49217605 rs281388 T G 2531.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=1.7 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2560,237,0 19 49218060 rs35866622 C T 1006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.018;SOR=0.639 GT:AD:DP:GQ:PL 0/1:60,46:106:99:1035,0,1582 19 49218111 rs33988101 G T 1440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-0.177;SOR=0.628 GT:AD:DP:GQ:PL 0/1:78,62:140:99:1469,0,1897 19 49218602 rs12979278 C T 3121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=-0.674;SOR=0.768 GT:AD:DP:GQ:PL 0/1:84,131:215:99:3150,0,1817 19 49232226 rs2287922 G A 2923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.815;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.476;SOR=0.615 GT:AD:DP:GQ:PL 0/1:162,120:282:99:2952,0,3961 19 49244219 rs2307018 C A 4336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.86;ReadPosRankSum=-0.527;SOR=0.634 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,113:230:99:0|1:49244219_C_A:4365,0,6425 19 49244220 rs2307019 G A 4336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.86;ReadPosRankSum=-0.169;SOR=0.667 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,113:230:99:0|1:49244219_C_A:4365,0,6425 19 49247693 rs8108136 C T 747.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.838;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=3.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.694;SOR=0.387 GT:AD:DP:GQ:PL 0/1:31,36:67:99:776,0,807 19 49247786 rs8108468 G A 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=0.29;SOR=0.784 GT:AD:DP:GQ:PL 0/1:37,48:85:99:1103,0,863 19 49259529 rs838133 A G 2162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.461;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.24;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.544;SOR=0.571 GT:AD:DP:GQ:PL 0/1:81,87:168:99:2191,0,1995 19 49261368 rs739320 T C 2722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.501;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-3.196;SOR=0.78 GT:AD:DP:GQ:PL 0/1:143,106:249:99:2751,0,3640 19 49300605 rs526744 T C 5962.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.274 GT:AD:DP:GQ:PL 1/1:0,196:196:99:5991,588,0 19 49303070 rs11548193 G C 4078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.964;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.038;SOR=0.542 GT:AD:DP:GQ:PL 0/1:175,152:329:99:4107,0,4456 19 49334991 rs62127966 C T 855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.51;ReadPosRankSum=-0.458;SOR=0.566 GT:AD:DP:GQ:PL 0/1:70,44:114:99:884,0,1679 19 49337559 rs139987974 C A 1607.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-0.562;SOR=0.556 GT:AD:DP:GQ:PL 0/1:52,70:122:99:1636,0,1185 19 49339098 rs8110220 T C 822.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.189;SOR=0.722 GT:AD:DP:GQ:PL 0/1:30,36:66:99:851,0,755 19 49351149 rs28556985 C T 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.64;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.341;SOR=0.489 GT:AD:DP:GQ:PL 0/1:80,91:171:99:2115,0,2064 19 49368843 rs506425 T C 1253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=-1.092;SOR=0.703 GT:AD:DP:GQ:PL 0/1:76,59:135:99:1282,0,1814 19 49377319 rs610308 A G 3196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=3.273;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=1.007;SOR=0.792 GT:AD:DP:GQ:PL 0/1:146,131:277:99:3225,0,3708 19 49377424 rs11541192 G A 4920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.132;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.46;ReadPosRankSum=1.832;SOR=0.66 GT:AD:DP:GQ:PGT:PID:PL 0/1:167,132:299:99:0|1:49377424_G_A:4949,0,8142 19 49377436 rs556052 G C 4967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.375;ClippingRankSum=0;DB;DP=299;ExcessHet=3.0103;FS=5.299;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.61;ReadPosRankSum=1.207;SOR=0.769 GT:AD:DP:GQ:PGT:PID:PL 0/1:167,132:299:99:0|1:49377424_G_A:4996,0,8083 19 49377873 rs35023389 G A 2315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.632;SOR=0.745 GT:AD:DP:GQ:PL 0/1:125,91:216:99:2344,0,3469 19 49377918 rs35087747 G T 2649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.52;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=4.539;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.834;SOR=0.583 GT:AD:DP:GQ:PL 0/1:127,101:228:99:2678,0,3472 19 49378994 rs500079 A G 3841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.379;SOR=0.88 GT:AD:DP:GQ:PL 0/1:157,161:318:99:3870,0,3845 19 49379167 rs524 C T 3139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.97;ReadPosRankSum=1.804;SOR=0.783 GT:AD:DP:GQ:PL 0/1:118,124:242:99:3168,0,3009 19 49379182 rs527 G C 3202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.307;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=0.437;SOR=0.856 GT:AD:DP:GQ:PL 0/1:112,115:227:99:3231,0,2768 19 49399676 rs73061692 T C 2659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.452;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=0.119;SOR=0.567 GT:AD:DP:GQ:PL 0/1:98,109:207:99:2688,0,2196 19 49399821 rs12461075 G A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=-1.431;SOR=0.675 GT:AD:DP:GQ:PL 0/1:104,94:198:99:2038,0,2629 19 49407660 rs1058483 G A 761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.04;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.16;ReadPosRankSum=-0.589;SOR=1.029 GT:AD:DP:GQ:PL 0/1:39,36:75:99:790,0,872 19 49407715 rs73063515 C T 954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.05;ReadPosRankSum=2.503;SOR=1.158 GT:AD:DP:GQ:PGT:PID:PL 0/1:27,29:56:99:0|1:49407715_C_T:983,0,868 19 49409004 rs73063524 T C 1713.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.523;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=5.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.969;SOR=1.131 GT:AD:DP:GQ:PL 0/1:78,72:150:99:1742,0,1833 19 49416456 rs2387579 G A 1732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.381;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=1.305;SOR=0.896 GT:AD:DP:GQ:PL 0/1:77,73:150:99:1761,0,1855 19 49421966 rs2287836 T C 1801.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.217 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1830,177,0 19 49459104 rs1805419 A G 6214.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.125 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6243,624,0 19 49469087 rs2230267 T C 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.752;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.892;QD=9.44;ReadPosRankSum=-1.947;SOR=0.602 GT:AD:DP:GQ:PL 0/1:132,103:235:99:2246,0,2967 19 49513273 rs1062708 C T 2378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.325;SOR=0.586 GT:AD:DP:GQ:PL 0/1:112,101:213:99:2407,0,2857 19 49519058 rs749776 T C 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.954;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=-1.641;SOR=0.732 GT:AD:DP:GQ:PL 0/1:52,51:103:99:1464,0,1373 19 49519466 rs1056917 A G 5382.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0;DB;DP=437;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.146;SOR=0.631 GT:AD:DP:GQ:PL 0/1:214,223:437:99:5411,0,5254 19 49519785 rs140502544 CT C 5377.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=384;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.5;MQ=56.59;MQRankSum=-11.831;QD=14.08;ReadPosRankSum=-1.185;SOR=0.944 GT:AD:DP:GQ:PL 0/1:236,146:382:99:5415,0,9403 19 49519793 rs2387588 A G 5460.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.147;ClippingRankSum=0;DB;DP=404;ExcessHet=3.0103;FS=1.83;MLEAC=1;MLEAF=0.5;MQ=56.42;MQRankSum=-13.104;QD=13.55;ReadPosRankSum=-3.298;SOR=0.859 GT:AD:DP:GQ:PL 0/1:251,152:403:99:5489,0,9894 19 49519855 rs1056914 T G 7715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0;DB;DP=509;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.33;MQRankSum=-11.553;QD=15.19;ReadPosRankSum=-1.618;SOR=0.696 GT:AD:DP:GQ:PGT:PID:PL 0/1:299,209:508:99:0|1:49519855_T_G:7744,0,11865 19 49519873 rs6521 G C 8296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.475;ClippingRankSum=0;DB;DP=561;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.5;MQ=58.11;MQRankSum=-10.697;QD=14.79;ReadPosRankSum=3.349;SOR=0.915 GT:AD:DP:GQ:PGT:PID:PL 0/1:329,232:561:99:0|1:49519855_T_G:8325,0,12330 19 49520315 rs2387589 T C 6649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.456;ClippingRankSum=0;DB;DP=449;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=59.33;MQRankSum=-5.184;QD=14.81;ReadPosRankSum=1.14;SOR=0.649 GT:AD:DP:GQ:PL 0/1:201,248:449:99:6678,0,4639 19 49526167 rs200571270 C T 1370.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.443;ClippingRankSum=0;DB;DP=432;ExcessHet=3.0103;FS=16.102;MLEAC=1;MLEAF=0.5;MQ=38.69;MQRankSum=-12.163;QD=3.17;ReadPosRankSum=1.386;SOR=1.843 GT:AD:DP:GQ:PL 0/1:332,100:432:99:1399,0,8949 19 49526191 rs28571120 G A 71.77 SNP_QD_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.709;ClippingRankSum=0;DB;DP=557;ExcessHet=3.0103;FS=55.387;MLEAC=1;MLEAF=0.5;MQ=37.38;MQRankSum=-0.445;QD=0.13;ReadPosRankSum=1.511;SOR=7.427 GT:AD:DP:GQ:PGT:PID:PL 0/1:517,40:557:99:0|1:49526191_G_A:100,0,21327 19 49536390 rs201260266 C A 1872.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.686;ClippingRankSum=0;DB;DP=380;ExcessHet=3.0103;FS=35.592;MLEAC=1;MLEAF=0.5;MQ=39.89;MQRankSum=-3.782;QD=4.94;ReadPosRankSum=-4.823;SOR=1.938 GT:AD:DP:GQ:PL 0/1:288,91:379:99:1901,0,6897 19 49539560 rs62126040 T C 5890.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.417;ClippingRankSum=0;DB;DP=544;ExcessHet=3.0103;FS=11.919;MLEAC=1;MLEAF=0.5;MQ=54.5;MQRankSum=-13.454;QD=10.83;ReadPosRankSum=2.108;SOR=1.081 GT:AD:DP:GQ:PGT:PID:PL 0/1:376,168:544:99:0|1:49539560_T_C:5919,0,16504 19 49539566 rs35854464 G A 6001.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0;DB;DP=525;ExcessHet=3.0103;FS=14.667;MLEAC=1;MLEAF=0.5;MQ=55.53;MQRankSum=-15.03;QD=11.43;ReadPosRankSum=2.756;SOR=1.093 GT:AD:DP:GQ:PGT:PID:PL 0/1:355,170:525:99:0|1:49539560_T_C:6030,0,16242 19 49547890 rs200249500 G A 2554.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.75;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.5;MQ=28.47;MQRankSum=-0.283;QD=8.63;ReadPosRankSum=0.565;SOR=0.872 GT:AD:DP:GQ:PL 0/1:175,121:296:99:2583,0,4264 19 49548503 rs200423308 T C 1976.77 SNP_FS_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=10.101;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=79.146;MLEAC=1;MLEAF=0.5;MQ=36.64;MQRankSum=0.983;QD=11.43;ReadPosRankSum=0.716;SOR=4.908 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,55:173:99:0|1:49548503_T_C:2005,0,6265 19 49548527 rs376302889 G A 2334.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.062;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=36.079;MLEAC=1;MLEAF=0.5;MQ=38.03;MQRankSum=0.728;QD=11.28;ReadPosRankSum=0.158;SOR=2.233 GT:AD:DP:GQ:PGT:PID:PL 0/1:131,76:207:99:0|1:49548503_T_C:2363,0,6501 19 49550972 rs62127871 G C 1179.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.516;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=21.52;MLEAC=1;MLEAF=0.5;MQ=33.32;MQRankSum=-7.363;QD=3.52;ReadPosRankSum=-0.218;SOR=0.648 GT:AD:DP:GQ:PL 0/1:252,83:335:99:1208,0,6685 19 49551573 rs151241744 C T 965.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.931;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=14.974;MLEAC=1;MLEAF=0.5;MQ=30.32;MQRankSum=0.519;QD=2.89;ReadPosRankSum=0.667;SOR=1.609 GT:AD:DP:GQ:PL 0/1:264,70:334:99:994,0,6874 19 49557572 rs62127880 T C 2057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.056;ClippingRankSum=0;DB;DP=398;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.5;MQ=44.71;MQRankSum=-12.219;QD=5.2;ReadPosRankSum=2.519;SOR=0.642 GT:AD:DP:GQ:PL 0/1:288,108:398:99:2086,0,7153 19 49558210 rs56106646 A G 3249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.969;ClippingRankSum=0;DB;DP=418;ExcessHet=3.0103;FS=11.863;MLEAC=1;MLEAF=0.5;MQ=57.71;MQRankSum=-12.066;QD=7.77;ReadPosRankSum=-5.397;SOR=1.461 GT:AD:DP:GQ:PGT:PID:PL 0/1:318,100:418:99:0|1:49558210_A_G:3278,0,19142 19 49558211 rs62127883 T G 3281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.055;ClippingRankSum=0;DB;DP=421;ExcessHet=3.0103;FS=10.133;MLEAC=1;MLEAF=0.5;MQ=57.72;MQRankSum=-12.037;QD=7.8;ReadPosRankSum=-4.901;SOR=1.419 GT:AD:DP:GQ:PGT:PID:PL 0/1:320,101:421:99:0|1:49558210_A_G:3310,0,19139 19 49558216 rs35728583 C T 3504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.445;ClippingRankSum=0;DB;DP=440;ExcessHet=3.0103;FS=8.532;MLEAC=1;MLEAF=0.5;MQ=58.05;MQRankSum=-12.06;QD=7.97;ReadPosRankSum=-4.337;SOR=1.253 GT:AD:DP:GQ:PGT:PID:PL 0/1:327,113:440:99:0|1:49558210_A_G:3533,0,19203 19 49611319 rs1058882 C T 5424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0;DB;DP=397;ExcessHet=3.0103;FS=0.365;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=0.122;SOR=0.654 GT:AD:DP:GQ:PL 0/1:176,220:396:99:5453,0,4418 19 49617706 rs10419132 T C 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.042;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.195;SOR=0.596 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1493,0,1339 19 49621592 rs1060967 G C 844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.993;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-1.161;SOR=0.905 GT:AD:DP:GQ:PL 0/1:54,34:88:99:873,0,1456 19 49621905 rs2232004 A G 3174.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.821;SOR=0.767 GT:AD:DP:GQ:PL 0/1:156,133:289:99:3203,0,4107 19 49621964 rs2232003 T C 3808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.416;SOR=0.58 GT:AD:DP:GQ:PL 0/1:137,155:292:99:3837,0,3333 19 49631698 rs76397153 G A 1360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.955;SOR=0.755 GT:AD:DP:GQ:PL 0/1:74,55:129:99:1389,0,2091 19 49636633 rs2287761 G C 2658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.949;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=0.238;SOR=0.739 GT:AD:DP:GQ:PL 0/1:136,128:264:99:2687,0,3564 19 49640002 rs2303053 G T 2151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.201;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=1.297;SOR=0.464 GT:AD:DP:GQ:PL 0/1:88,94:182:99:2180,0,2304 19 49641651 rs117880896 C T 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.133;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.53;ReadPosRankSum=-0.627;SOR=0.785 GT:AD:DP:GQ:PL 0/1:143,101:244:99:2110,0,3725 19 49657889 rs147238387 T TTCC 2545.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.045;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.58;MQRankSum=3.642;QD=11.36;ReadPosRankSum=1.688;SOR=0.727 GT:AD:DP:GQ:PL 0/1:114,110:232:99:2583,0,4376 19 49658209 rs3745297 A C 1624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.8;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-1.643;SOR=0.729 GT:AD:DP:GQ:PL 0/1:90,65:155:99:1653,0,2336 19 49658367 rs3745298 C T 3336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.44;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.04;ReadPosRankSum=-2.782;SOR=0.516 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,94:185:99:0|1:49658367_C_T:3365,0,4398 19 49658390 rs3745299 T C 3431.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.833;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.69;ReadPosRankSum=-1.739;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,96:194:99:0|1:49658367_C_T:3460,0,4563 19 49671507 rs78444754 G A 2000.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.54;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.08;SOR=0.767 GT:AD:DP:GQ:PL 0/1:105,81:186:99:2029,0,2899 19 49684586 rs11668638 T A 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.657;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=-0.744;SOR=1.258 GT:AD:DP:GQ:PL 0/1:24,30:54:99:827,0,584 19 49839015 rs354021 T C 955.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.744;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=2.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=0.019;SOR=1.059 GT:AD:DP:GQ:PL 0/1:41,37:78:99:984,0,1027 19 49851941 rs254661 G A 1286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=1.282;SOR=0.717 GT:AD:DP:GQ:PL 0/1:40,52:92:99:1315,0,971 19 49867913 rs919364 G A 2143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=10.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=-1.214;SOR=1.329 GT:AD:DP:GQ:PL 0/1:102,94:196:99:2172,0,2695 19 49894152 rs7256629 C T 2432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.162;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.75;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.541;SOR=0.833 GT:AD:DP:GQ:PL 0/1:94,101:195:99:2461,0,1927 19 49899076 rs10405154 G A 892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.396;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=6.6;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=1.302;SOR=1.274 GT:AD:DP:GQ:PL 0/1:57,40:97:99:921,0,1345 19 49901318 rs10421748 T C 1915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.232;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-2.038;SOR=0.711 GT:AD:DP:GQ:PL 0/1:81,72:153:99:1944,0,1903 19 49930721 rs4802605 T C 4656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.153;ClippingRankSum=0;DB;DP=368;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.281;SOR=0.64 GT:AD:DP:GQ:PL 0/1:183,184:367:99:4685,0,4227 19 49935927 rs5828394 A AG 6189.73 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=33.64;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,184:184:99:6227,562,0 19 49944568 rs118004903 G A 2438.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.07;ReadPosRankSum=-0.429;SOR=0.62 GT:AD:DP:GQ:PL 0/1:103,99:202:99:2467,0,2665 19 49949652 rs7462 G A 336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.356;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=0.578;SOR=0.616 GT:AD:DP:GQ:PL 0/1:12,11:23:99:365,0,385 19 49950298 rs13394 C T 2581.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.47;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2610,281,0 19 49950356 rs12443 C G 2309.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2338,239,0 19 49954803 rs2293013 C T 7388.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.33;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,163:163:99:1|1:49954803_C_T:7417,506,0 19 49954807 rs2293012 T G 7343.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.78;SOR=0.768 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,164:164:99:1|1:49954803_C_T:7372,503,0 19 49956690 rs3760670 C T 1621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.332;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.48;ReadPosRankSum=1.09;SOR=0.291 GT:AD:DP:GQ:PL 0/1:47,65:112:99:1650,0,1365 19 49964977 rs1320303 C G 9116.77 PASS AC=2;AF=1;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,304:304:99:9145,912,0 19 49965131 rs76844851 G A 5433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=4.128;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.53;ReadPosRankSum=-0.539;SOR=0.654 GT:AD:DP:GQ:PGT:PID:PL 0/1:205,145:350:99:0|1:49965131_G_A:5462,0,8674 19 49965132 rs79109084 G C 5433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=3.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.57;ReadPosRankSum=-0.382;SOR=0.638 GT:AD:DP:GQ:PGT:PID:PL 0/1:205,144:349:99:0|1:49965131_G_A:5462,0,8674 19 49965173 rs7259560 A T 3341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.413;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=1.305;SOR=0.715 GT:AD:DP:GQ:PL 0/1:191,135:326:99:3370,0,5019 19 49967680 rs2293009 G A 2126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.76;SOR=0.715 GT:AD:DP:GQ:PL 0/1:88,89:177:99:2155,0,2365 19 49967981 rs11558188 T G 3375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.95;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=-0.284;SOR=0.655 GT:AD:DP:GQ:PL 0/1:148,133:281:99:3404,0,3662 19 49969085 rs10853810 C T 3235.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=0.545;SOR=0.7 GT:AD:DP:GQ:PL 0/1:140,138:278:99:3264,0,3442 19 50093141 rs62128117 C A 942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.453;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.75;SOR=0.945 GT:AD:DP:GQ:PL 0/1:61,40:101:99:971,0,1547 19 50093248 rs144521999 A T 1142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.277;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=8.006;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.57;ReadPosRankSum=1.505;SOR=1.371 GT:AD:DP:GQ:PL 0/1:88,63:151:99:1171,0,1539 19 50119139 rs202087325 G A 3583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.211;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.857;SOR=0.621 GT:AD:DP:GQ:PL 0/1:154,152:306:99:3612,0,4128 19 50154904 rs7251334 A C 8880.77 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,288:288:99:8909,863,0 19 50156896 rs10401743 T C 10224.8 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,333:333:99:10253,999,0 19 50216118 rs56405217 T TG 3307.73 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.42;QD=33.41;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3345,301,0 19 50383591 rs8109661 A G 6603.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.48;SOR=0.805 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6632,671,0 19 50404939 rs1290754 T G 1700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.27;SOR=0.494 GT:AD:DP:GQ:PL 0/1:78,73:151:99:1729,0,1731 19 50411742 rs892028 A G 7818.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7847,785,0 19 50412217 rs1062798 C G 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.728;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.9;ReadPosRankSum=1.116;SOR=0.687 GT:AD:DP:GQ:PL 0/1:150,94:244:99:1956,0,4053 19 50412417 rs999583 G A 2727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.522;SOR=0.662 GT:AD:DP:GQ:PL 0/1:126,118:244:99:2756,0,3252 19 50435747 rs283525 T C 406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.53;ReadPosRankSum=-2.231;SOR=0.422 GT:AD:DP:GQ:PL 0/1:31,23:54:99:435,0,756 19 50435862 rs283526 C T 486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.588;SOR=0.61 GT:AD:DP:GQ:PL 0/1:23,21:44:99:515,0,579 19 50453317 rs9304690 C T 2812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.754;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-1.779;SOR=0.517 GT:AD:DP:GQ:PL 0/1:135,115:250:99:2841,0,3390 19 50462298 rs62113133 G C 3535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.52;MQRankSum=-10.109;QD=14.49;ReadPosRankSum=-0.851;SOR=0.724 GT:AD:DP:GQ:PL 0/1:115,129:244:99:3564,0,3086 19 50463693 rs201127706 G GT 4718.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.196;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.5;MQ=54.96;MQRankSum=-10.768;QD=16.67;ReadPosRankSum=0.452;SOR=0.766 GT:AD:DP:GQ:PL 0/1:143,140:283:99:4756,0,4912 19 50463982 rs9676436 T G 2535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=42.71;MQRankSum=-0.289;QD=10.06;ReadPosRankSum=-0.397;SOR=0.695 GT:AD:DP:GQ:PL 0/1:143,109:252:99:2564,0,3540 19 50484234 rs16981617 G A 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.123;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.71;ReadPosRankSum=0.084;SOR=0.912 GT:AD:DP:GQ:PL 0/1:81,88:169:99:2007,0,1813 19 50726570 rs4801822 G A 1301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.44;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.5;ReadPosRankSum=0.074;SOR=0.743 GT:AD:DP:GQ:PL 0/1:74,63:137:99:1330,0,1861 19 50747533 rs61734424 T C 1054.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.921;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=2.396;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=1.375;SOR=0.543 GT:AD:DP:GQ:PL 0/1:70,49:119:99:1083,0,1587 19 50752897 rs73061136 G A 2503.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=-0.183;SOR=0.686 GT:AD:DP:GQ:PL 0/1:126,106:232:99:2532,0,3093 19 50753870 rs61731838 C T 2691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.049;SOR=0.625 GT:AD:DP:GQ:PL 0/1:91,123:214:99:2720,0,2110 19 50760716 rs378811 C G 2067.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.43;SOR=0.802 GT:AD:DP:GQ:PL 0/1:104,82:186:99:2096,0,2935 19 50762418 rs1651553 A G 3143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=1.088;SOR=0.693 GT:AD:DP:GQ:PL 0/1:137,137:274:99:3172,0,3169 19 50763889 rs12981413 C T 1025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.838;SOR=0.897 GT:AD:DP:GQ:PL 0/1:44,44:88:99:1054,0,1129 19 50771609 rs3745504 G A 4125.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4154,423,0 19 50771635 rs930086 T C 4000.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4029,402,0 19 50789967 rs10406788 G A 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.33;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.98;ReadPosRankSum=-1.027;SOR=0.721 GT:AD:DP:GQ:PL 0/1:65,88:153:99:2320,0,1755 19 50805138 rs3826772 C T 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.049;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=1.869;SOR=0.563 GT:AD:DP:GQ:PL 0/1:73,54:127:99:1447,0,1846 19 50832152 rs375912738 T C 701.77 PASS AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,22:22:66:730,66,0 19 50863023 rs638294 A G 3207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-1.044;QD=11.46;ReadPosRankSum=1.699;SOR=0.55 GT:AD:DP:GQ:PL 0/1:147,133:280:99:3236,0,3701 19 50865535 rs676314 A G 1892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.287;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=0.503;SOR=0.719 GT:AD:DP:GQ:PL 0/1:109,77:186:99:1921,0,2760 19 50881820 rs55652650 A AAAC 2736.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.076;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.61;MQRankSum=3.327;QD=13.55;ReadPosRankSum=0.588;SOR=0.73 GT:AD:DP:GQ:PL 0/1:94,108:202:99:2774,0,2529 19 50881822 rs34296657 A ACAG 2384.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.67;MQRankSum=-3.33;QD=11.81;ReadPosRankSum=0.603;SOR=0.659 GT:AD:DP:GQ:PL 0/1:112,90:202:99:2422,0,2868 19 50905042 rs20582 G A 2742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.684;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=1.138;SOR=0.836 GT:AD:DP:GQ:PL 0/1:96,113:209:99:2771,0,2231 19 50905074 rs1726801 G A 2769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.259;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=1.081;SOR=0.751 GT:AD:DP:GQ:PL 0/1:107,118:225:99:2798,0,2516 19 50905189 rs1726802 G T 2594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=7.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.342;SOR=0.824 GT:AD:DP:GQ:PL 0/1:127,103:230:99:2623,0,3457 19 50918969 rs3219433 A G 1037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=3.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-2.001;SOR=0.346 GT:AD:DP:GQ:PL 0/1:34,39:73:99:1066,0,816 19 50919797 rs3218776 C T 2601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=5.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=2.177;SOR=0.563 GT:AD:DP:GQ:PL 0/1:92,108:200:99:2630,0,2412 19 50926264 rs1673030 T C 6462.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.93;SOR=1.3 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,185:185:99:1|1:50926264_T_C:6491,556,0 19 50926265 rs11546996 G C 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=0.51;SOR=1.126 GT:AD:DP:GQ:PGT:PID:PL 0/1:109,74:183:99:0|1:50926264_T_C:1605,0,2665 19 50939867 rs2004423 G A 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.11;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=1.642;SOR=1.038 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1332,0,1305 19 50951640 rs34051416 G A 1952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.245;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=0.13;SOR=1.068 GT:AD:DP:GQ:PL 0/1:137,86:223:99:1981,0,3387 19 50954584 rs8105250 C T 1121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.364;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=0.903;SOR=0.884 GT:AD:DP:GQ:PL 0/1:76,55:131:99:1150,0,1709 19 50957397 rs25665 G A 2480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.12;ReadPosRankSum=-1.15;SOR=0.747 GT:AD:DP:GQ:PL 0/1:157,115:272:99:2509,0,3795 19 50962348 . G C 163.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.106;ClippingRankSum=0;DP=191;ExcessHet=3.0103;FS=143.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.87;ReadPosRankSum=-3.724;SOR=6.735 GT:AD:DP:GQ:PGT:PID:PL 0/1:161,28:189:99:0|1:50962348_G_C:192,0,8332 19 50962353 . G C 57.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.055;ClippingRankSum=0;DP=193;ExcessHet=3.0103;FS=109.827;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.3;ReadPosRankSum=-2.704;SOR=6.271 GT:AD:DP:GQ:PGT:PID:PL 0/1:169,22:191:86:0|1:50962348_G_C:86,0,8773 19 50962357 . T A 35.77 SNP_QD_filter;SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.029;ClippingRankSum=0;DP=192;ExcessHet=3.0103;FS=95.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.19;ReadPosRankSum=-3.596;SOR=6.089 GT:AD:DP:GQ:PGT:PID:PL 0/1:170,20:190:64:0|1:50962348_G_C:64,0,8844 19 50965272 rs25668 T C 8358.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.23;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,286:286:99:8387,858,0 19 50967640 rs25667 G A 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.78;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=0.355;SOR=0.968 GT:AD:DP:GQ:PL 0/1:112,82:194:99:1892,0,2606 19 50967735 rs113141947 C T 3037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.532;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.142;SOR=0.666 GT:AD:DP:GQ:PL 0/1:133,125:258:99:3066,0,3173 19 50983930 rs10409679 C T 9452.77 PASS AC=2;AF=1;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,325:325:99:9481,972,0 19 51015404 rs12977172 T C 5235.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=30.26;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5264,519,0 19 51020903 rs61751956 A G 2637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.228;SOR=0.636 GT:AD:DP:GQ:PL 0/1:166,114:280:99:2666,0,4425 19 51021057 rs61751957 A G 2891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.264;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=11.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.307;SOR=0.336 GT:AD:DP:GQ:PL 0/1:167,123:290:99:2920,0,3808 19 51128661 rs16986142 T C 4246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.427;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=2.148;SOR=0.65 GT:AD:DP:GQ:PL 0/1:154,155:309:99:4275,0,3903 19 51133356 rs10407511 C G 2784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.34;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=0.098;SOR=0.64 GT:AD:DP:GQ:PL 0/1:99,108:207:99:2813,0,2533 19 51159571 rs4801844 T G 8191.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.38;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8220,759,0 19 51165878 rs201299941 A G 2421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.688;SOR=0.562 GT:AD:DP:GQ:PL 0/1:107,101:208:99:2450,0,2750 19 51170706 rs3745521 A G 2449.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.082;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=0.869;SOR=0.605 GT:AD:DP:GQ:PL 0/1:89,95:184:99:2478,0,2195 19 51171188 rs750578 G A 3080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.515;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=4.222;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=0.326;SOR=0.94 GT:AD:DP:GQ:PL 0/1:131,120:251:99:3109,0,3089 19 51191172 rs12975345 A G 2564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.911;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.25;ReadPosRankSum=0.701;SOR=0.866 GT:AD:DP:GQ:PL 0/1:78,102:180:99:2593,0,1752 19 51217550 rs3745530 G A 3425.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=1.198 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3454,356,0 19 51274836 rs1864011 T C 1778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=54.82;MQRankSum=-0.072;QD=11.55;ReadPosRankSum=-0.436;SOR=0.7 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1807,0,1826 19 51297825 rs55716643 G A 10876.8 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.76;SOR=0.735 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,243:243:99:1|1:51297825_G_A:10905,743,0 19 51297826 rs55735528 C A 10876.8 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.39;SOR=0.751 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,245:245:99:1|1:51297825_G_A:10905,743,0 19 51301395 rs4801853 C T 7760.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.55;SOR=1.231 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7789,737,0 19 51301456 rs4802741 G A 9067.77 PASS AC=2;AF=1;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.875 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9096,922,0 19 51323232 rs5517 T C 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.347;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=6.231;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.255;SOR=0.629 GT:AD:DP:GQ:PL 0/1:98,85:183:99:1917,0,2323 19 51323473 rs5516 C G 5253.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5282,477,0 19 51323501 rs1054713 A G 4921.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4950,482,0 19 51330423 rs61752560 C G 1789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=-0.078;SOR=0.522 GT:AD:DP:GQ:PL 0/1:98,78:176:99:1818,0,2518 19 51330932 rs3745522 G T 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=4.025;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.391;SOR=0.47 GT:AD:DP:GQ:PL 0/1:110,93:203:99:2110,0,2667 19 51359497 rs11573 T C 2466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.585;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.9;ReadPosRankSum=-0.789;SOR=0.679 GT:AD:DP:GQ:PGT:PID:PL 0/1:82,64:146:99:0|1:51359497_T_C:2495,0,4042 19 51359503 rs1135766 A G 2509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.201;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.19;ReadPosRankSum=-0.727;SOR=0.537 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,69:155:99:0|1:51359497_T_C:2538,0,4126 19 51363398 rs1058205 C T 3512.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.23;SOR=2.115 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3541,327,0 19 51410171 rs73042387 G A 1629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.696;SOR=0.972 GT:AD:DP:GQ:PL 0/1:62,64:126:99:1658,0,1598 19 51411636 rs2569527 G T 7433.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7462,719,0 19 51412666 rs1654552 C A 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.638;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.19;ReadPosRankSum=1.024;SOR=0.616 GT:AD:DP:GQ:PGT:PID:PL 0/1:68,70:138:99:0|1:51412666_C_A:1848,0,2624 19 51412668 rs1654551 A C 1821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.975;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=-0.418;SOR=0.752 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,66:135:99:1|0:51412666_C_A:1850,0,2699 19 51452250 rs183854 T C 5009.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5038,510,0 19 51465096 rs1701950 C G 2072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.918;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.598;SOR=0.748 GT:AD:DP:GQ:PL 0/1:94,82:176:99:2101,0,2256 19 51485622 rs2659067 A G 1989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=0.607;SOR=0.739 GT:AD:DP:GQ:PL 0/1:71,85:156:99:2018,0,1705 19 51503524 rs1701946 T C 1188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.017;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-1.413;SOR=0.899 GT:AD:DP:GQ:PL 0/1:72,48:120:99:1217,0,1995 19 51504386 rs199671601 A G 2095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=0.437;SOR=0.82 GT:AD:DP:GQ:PL 0/1:79,91:170:99:2124,0,1819 19 51507020 rs2075802 T G 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.78;ReadPosRankSum=0.937;SOR=0.709 GT:AD:DP:GQ:PL 0/1:37,64:101:99:1521,0,824 19 51518222 rs2075696 G A 1346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-1.051;SOR=0.705 GT:AD:DP:GQ:PL 0/1:71,62:133:99:1375,0,1837 19 51519236 rs2075690 A G 7665.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7694,744,0 19 51519259 rs2075689 C T 7072.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7101,710,0 19 51519346 rs1061368 G C 2687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=-0.865;SOR=0.82 GT:AD:DP:GQ:PGT:PID:PL 0/1:129,110:239:99:0|1:51519346_G_C:2716,0,3253 19 51519364 rs2075688 T G 8628.77 PASS AC=2;AF=1;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.88;SOR=1.047 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,234:234:99:1|1:51519346_G_C:8657,706,0 19 51520487 rs3745535 A C 7070.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.48;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7099,696,0 19 51522286 rs2304156 C T 539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.437;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=5.374;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.84;SOR=0.274 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,27:57:99:0|1:51522286_C_T:568,0,630 19 51522291 rs2304157 G C 2121.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.22;SOR=1.057 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,62:62:99:1|1:51522286_C_T:2150,186,0 19 51530693 rs1474520 G A 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.569;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-2.088;SOR=0.716 GT:AD:DP:GQ:PL 0/1:54,50:104:99:1116,0,1192 19 51535130 rs3745540 A G 2196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.042;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=1.113;SOR=0.747 GT:AD:DP:GQ:PL 0/1:106,90:196:99:2225,0,2444 19 51584916 rs2569491 G A 2143.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=1.844;SOR=0.534 GT:AD:DP:GQ:PL 0/1:90,88:178:99:2172,0,2263 19 51584951 rs35287116 T C 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.53;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.77;ReadPosRankSum=2.659;SOR=0.708 GT:AD:DP:GQ:PL 0/1:67,73:140:99:1956,0,1667 19 51607507 rs17855403 G A 2977.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.241;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.77;ReadPosRankSum=1.022;SOR=0.596 GT:AD:DP:GQ:PL 0/1:129,124:253:99:3006,0,3456 19 51628529 rs2075803 A G 3949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.643;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.091;SOR=0.745 GT:AD:DP:GQ:PL 0/1:163,154:317:99:3978,0,3876 19 51630482 rs2258983 C A 2504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.146;SOR=0.682 GT:AD:DP:GQ:PL 0/1:106,107:213:99:2533,0,2621 19 51656454 rs273662 A T 4653.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4682,453,0 19 51728477 rs12459419 C T 2591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.04;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=0.821;SOR=0.698 GT:AD:DP:GQ:PL 0/1:117,111:228:99:2620,0,2846 19 51729103 rs201074739 CCCGG C 2802.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.28;MQRankSum=2.067;QD=18.32;ReadPosRankSum=0.511;SOR=0.682 GT:AD:DP:GQ:PL 0/1:78,75:153:99:2840,0,4354 19 51738917 rs35112940 G A 1335.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.89;ReadPosRankSum=0.281;SOR=0.653 GT:AD:DP:GQ:PL 0/1:75,60:135:99:1364,0,1846 19 51835892 rs11402251 T TG 5319.73 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.2;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,143:143:99:5357,430,0 19 51837171 rs7255306 A G 1764.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.822;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-3.123;SOR=0.804 GT:AD:DP:GQ:PL 0/1:82,66:148:99:1793,0,2165 19 51837213 rs7255412 A G 1267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.85;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=0.252;SOR=1.151 GT:AD:DP:GQ:PL 0/1:70,51:121:99:1296,0,1717 19 51841417 rs34380065 C T 3504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.932;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-1.165;SOR=0.716 GT:AD:DP:GQ:PL 0/1:141,143:284:99:3533,0,3338 19 51843808 rs7259266 C T 4012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.816;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.357;SOR=0.685 GT:AD:DP:GQ:PL 0/1:184,175:359:99:4041,0,4971 19 51844978 rs8105710 G T 2301.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=3.101;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.002;SOR=0.52 GT:AD:DP:GQ:PL 0/1:118,92:210:99:2330,0,3107 19 51845371 rs10414211 T G 2569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.312;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.57;SOR=0.518 GT:AD:DP:GQ:PL 0/1:108,103:211:99:2598,0,2740 19 51850290 rs1130426 G A 2331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.844;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=6.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=0.364;SOR=1.139 GT:AD:DP:GQ:PL 0/1:104,96:200:99:2360,0,2444 19 51857738 rs79338777 G A 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.502;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.08;ReadPosRankSum=1.237;SOR=0.703 GT:AD:DP:GQ:PL 0/1:106,64:170:99:1571,0,2573 19 51871195 rs3745403 G A 3561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.843;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.13;ReadPosRankSum=-1.268;SOR=0.619 GT:AD:DP:GQ:PL 0/1:113,139:252:99:3590,0,3091 19 51919434 rs375392809 GA G 96.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.604;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.907;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.51;ReadPosRankSum=-0.099;SOR=0.742 GT:AD:DP:GQ:PL 0/1:162,28:209:99:134,0,3841 19 51919949 rs9304711 G A 6765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0;DB;DP=609;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.5;MQ=59.73;MQRankSum=-0.022;QD=11.15;ReadPosRankSum=0.911;SOR=0.772 GT:AD:DP:GQ:PL 0/1:325,282:607:99:6794,0,8689 19 51920613 rs1010425 C T 9617.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.71;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,294:294:99:9646,883,0 19 51955626 rs36491 A G 4073.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=1.347 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4102,381,0 19 51957556 rs3829659 T C 6919.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.64;QD=30.48;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,227:227:99:6948,680,0 19 51981946 rs75588884 T C 1059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.408;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-0.087;SOR=0.733 GT:AD:DP:GQ:PL 0/1:48,49:97:99:1088,0,1008 19 51983673 rs61743859 G A 1442.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.805;SOR=0.707 GT:AD:DP:GQ:PL 0/1:74,63:137:99:1471,0,1846 19 51984656 rs62115071 G A 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.208;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.98;ReadPosRankSum=-1.533;SOR=0.709 GT:AD:DP:GQ:PL 0/1:51,60:111:99:1580,0,1412 19 51984725 rs8106673 T A 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=-0.67;SOR=0.62 GT:AD:DP:GQ:PL 0/1:64,94:158:99:2258,0,1552 19 51986547 rs10426247 A G 2154.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.5;MQ=59.8;MQRankSum=-2.292;QD=13.72;ReadPosRankSum=0.795;SOR=0.461 GT:AD:DP:GQ:PL 0/1:66,91:157:99:2183,0,1525 19 51988280 rs10414941 G A 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.533;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=-3.328;SOR=0.514 GT:AD:DP:GQ:PL 0/1:85,70:155:99:1547,0,2241 19 51988326 rs10416318 T C 1617.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.486;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.92;ReadPosRankSum=0.582;SOR=0.67 GT:AD:DP:GQ:PL 0/1:97,66:163:99:1646,0,2171 19 52000624 rs3752135 T G 4988.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5017,519,0 19 52000659 rs28744388 G A 1916.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.977;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=5.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.928;SOR=1.096 GT:AD:DP:GQ:PL 0/1:91,88:179:99:1945,0,1969 19 52000672 rs3829658 G A 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.14;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=4.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=0.482;SOR=0.414 GT:AD:DP:GQ:PL 0/1:82,87:169:99:1920,0,1966 19 52001282 rs56102305 G A 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.058;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=1.459;SOR=0.735 GT:AD:DP:GQ:PL 0/1:111,98:209:99:2275,0,2514 19 52001396 rs61743963 G A 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.351;SOR=0.743 GT:AD:DP:GQ:PL 0/1:136,101:237:99:2393,0,3374 19 52001485 rs11668530 G A 2638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.865;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=1.308;SOR=0.778 GT:AD:DP:GQ:PL 0/1:103,117:220:99:2667,0,2654 19 52002488 rs968491 C A 2474.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.35;SOR=1.011 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,70:70:99:1|1:52002488_C_A:2503,210,0 19 52002729 rs2009362 G A 2605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.015;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=5.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=-0.244;SOR=1.028 GT:AD:DP:GQ:PL 0/1:153,112:265:99:2634,0,3782 19 52003331 rs6509544 G C 6212.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6241,591,0 19 52004551 rs3810109 C T 3881.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.34;QD=33.46;SOR=1.692 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3910,348,0 19 52004743 rs3810110 G A 3049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.107;QD=10;ReadPosRankSum=0.573;SOR=0.715 GT:AD:DP:GQ:PL 0/1:167,138:305:99:3078,0,4415 19 52004791 rs66949844 G GC 5448.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.44;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=5.887;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=1.11;QD=17.3;ReadPosRankSum=1.459;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:173,142:315:99:0|1:52004791_G_GC:5486,0,7451 19 52004795 rs61742108 G T 5457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=6.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.9;ReadPosRankSum=1.322;SOR=0.749 GT:AD:DP:GQ:PGT:PID:PL 0/1:178,145:323:99:0|1:52004791_G_GC:5486,0,7451 19 52004903 rs16982743 G A 3163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.534;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.22;ReadPosRankSum=0.11;SOR=0.73 GT:AD:DP:GQ:PL 0/1:122,137:259:99:3192,0,3106 19 52032964 rs3976745 C G 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.402;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.835;SOR=0.783 GT:AD:DP:GQ:PL 0/1:107,76:183:99:1765,0,2881 19 52033742 rs2305772 G A 1624.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=7.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-1.389;SOR=0.916 GT:AD:DP:GQ:PL 0/1:82,70:152:99:1653,0,2002 19 52115645 rs3829655 G C 1364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.14;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=1.779;SOR=0.649 GT:AD:DP:GQ:PL 0/1:73,64:137:99:1393,0,1645 19 52130488 rs17740650 G A 612.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.569;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=1.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=0.34;SOR=0.617 GT:AD:DP:GQ:PL 0/1:44,27:71:99:641,0,1046 19 52131119 rs2278831 A G 2827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.929;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=4.474;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=-1.495;SOR=0.54 GT:AD:DP:GQ:PL 0/1:124,108:232:99:2856,0,3075 19 52217405 rs75977318 G A 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.943;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.446;SOR=0.952 GT:AD:DP:GQ:PL 0/1:73,64:137:99:1558,0,1746 19 52220351 rs11084111 G A 2919.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2948,295,0 19 52223121 rs7248778 A G 4008.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.69;SOR=1.441 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4037,404,0 19 52249211 rs867228 T G 1310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-0.682;SOR=0.414 GT:AD:DP:GQ:PL 0/1:84,59:143:99:1339,0,2321 19 52249672 rs1042229 A C 1902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.832;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.116;SOR=0.759 GT:AD:DP:GQ:PL 0/1:102,76:178:99:1931,0,2554 19 52249702 rs2070746 G T 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=1.994;SOR=0.69 GT:AD:DP:GQ:PL 0/1:75,91:166:99:2206,0,1955 19 52249947 rs2070745 C G 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.107;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.816;SOR=0.512 GT:AD:DP:GQ:PL 0/1:118,76:194:99:1973,0,3092 19 52250216 rs5030878 A G 4170.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.91;SOR=1.769 GT:AD:DP:GQ:PL 1/1:0,123:123:99:4199,369,0 19 52505463 rs151263298 C T 3075.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0.398;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.085;QD=9.24;ReadPosRankSum=2.307;SOR=0.73 GT:AD:DP:GQ:PL 0/1:181,152:333:99:3104,0,4421 19 52658510 rs8113504 T C 2809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.446;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=1.071;SOR=0.776 GT:AD:DP:GQ:PL 0/1:105,103:208:99:2838,0,2587 19 52659991 rs1821278 A G 3213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.851;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.789;SOR=0.785 GT:AD:DP:GQ:PL 0/1:106,123:229:99:3242,0,2550 19 52660279 rs1366245 C T 1671.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.694;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=12.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.65;ReadPosRankSum=-2.098;SOR=1.14 GT:AD:DP:GQ:PL 0/1:90,67:157:99:1700,0,2306 19 52803669 rs3217319 CTG C 4214.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.322;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=2.87;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.122;QD=16.21;ReadPosRankSum=0.105;SOR=0.905 GT:AD:DP:GQ:PL 0/1:144,116:260:99:4252,0,5458 19 52825032 rs13343641 C T 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.054;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.28;ReadPosRankSum=0.777;SOR=0.762 GT:AD:DP:GQ:PL 0/1:86,87:173:99:2152,0,2408 19 52825235 rs8102373 A G 2113.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=6.057;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=0.939;QD=11.13;ReadPosRankSum=-1.808;SOR=0.857 GT:AD:DP:GQ:PL 0/1:102,88:190:99:2142,0,2508 19 52856955 rs1961205 C T 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=0.498;SOR=0.494 GT:AD:DP:GQ:PL 0/1:80,64:144:99:1409,0,1958 19 52869022 rs2241586 G T 1940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.09;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-1.547;SOR=0.71 GT:AD:DP:GQ:PL 0/1:84,87:171:99:1969,0,1898 19 52869278 rs321937 G C 1844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=9.014;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=-0.376;SOR=0.722 GT:AD:DP:GQ:PL 0/1:62,74:136:99:1873,0,1628 19 52869312 rs162120 T C 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=4.08;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=0.26;SOR=1.046 GT:AD:DP:GQ:PL 0/1:65,70:135:99:1770,0,1713 19 52869534 rs162119 G A 1782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.626;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.61;ReadPosRankSum=-0.589;SOR=0.657 GT:AD:DP:GQ:PL 0/1:93,75:168:99:1811,0,2229 19 52909303 rs2290745 C T 4618.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.21;SOR=1.067 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4647,444,0 19 52920006 rs10664588 C CTG 4772.73 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=43.79;SOR=1.675 GT:AD:DP:GQ:PL 1/1:0,109:109:99:4810,328,0 19 52938361 rs11084161 C A 2588.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.475;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.433;SOR=0.705 GT:AD:DP:GQ:PL 0/1:104,114:218:99:2617,0,2560 19 52938417 rs11084162 A G 3271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=1.018;SOR=0.765 GT:AD:DP:GQ:PL 0/1:132,143:275:99:3300,0,3165 19 52938459 rs11084163 A G 3221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.062;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.577;SOR=0.972 GT:AD:DP:GQ:PL 0/1:130,135:265:99:3250,0,2951 19 52941171 rs1428180 T C 1581.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.646;SOR=0.98 GT:AD:DP:GQ:PL 0/1:72,69:141:99:1610,0,1842 19 52941540 rs1366257 G A 2693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.767;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=4.131;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.89;ReadPosRankSum=1.829;SOR=0.821 GT:AD:DP:GQ:PL 0/1:86,108:194:99:2722,0,1994 19 52941618 rs1366258 A C 2598.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.932;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=6.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-0.823;SOR=0.575 GT:AD:DP:GQ:PL 0/1:90,92:182:99:2627,0,2165 19 52941847 rs1366259 A T 3195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.149;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.825;SOR=0.765 GT:AD:DP:GQ:PL 0/1:107,129:236:99:3224,0,2503 19 52942159 rs2608497 A G 4095.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.622;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.32;ReadPosRankSum=0.215;SOR=0.694 GT:AD:DP:GQ:PL 0/1:133,153:286:99:4124,0,3128 19 53014346 rs161931 G A 3999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.129;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.38;ReadPosRankSum=0.201;SOR=0.67 GT:AD:DP:GQ:PL 0/1:98,162:260:99:4028,0,2428 19 53015384 rs4802965 A G 2832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.216;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.491;SOR=0.524 GT:AD:DP:GQ:PL 0/1:145,107:252:99:2861,0,3409 19 53075519 rs8104138 G T 126.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.51;ReadPosRankSum=-1.724;SOR=0.465 GT:AD:DP:GQ:PL 0/1:16,7:23:99:155,0,460 19 53077411 rs162832 T C 4599.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.207;ClippingRankSum=0;DB;DP=387;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=-0.992;QD=11.89;ReadPosRankSum=1.313;SOR=0.623 GT:AD:DP:GQ:PL 0/1:193,194:387:99:4628,0,4310 19 53085659 rs366793 C T 2081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.057;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=0.611;SOR=0.643 GT:AD:DP:GQ:PL 0/1:150,88:238:99:2110,0,3754 19 53085813 rs3745101 T C 2330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.981;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=1.19;SOR=0.721 GT:AD:DP:GQ:PL 0/1:93,89:182:99:2359,0,2335 19 53086124 rs373554 C A 3524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.869;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=6.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.35;ReadPosRankSum=2.058;SOR=0.411 GT:AD:DP:GQ:PL 0/1:129,135:264:99:3553,0,3616 19 53086598 rs3745102 G A 3841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.46;MQRankSum=-10.378;QD=11.04;ReadPosRankSum=-0.133;SOR=0.695 GT:AD:DP:GQ:PL 0/1:189,159:348:99:3870,0,4592 19 53117531 rs1056185 C T 1919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.198;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.695;SOR=0.686 GT:AD:DP:GQ:PL 0/1:73,77:150:99:1948,0,1973 19 53117809 rs10406458 C A 558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.07;ReadPosRankSum=-0.354;SOR=0.505 GT:AD:DP:GQ:PL 0/1:63,29:92:99:587,0,1672 19 53209553 rs4085566 G A 6041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0;DB;DP=347;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-0.873;QD=17.41;ReadPosRankSum=-0.622;SOR=0.77 GT:AD:DP:GQ:PGT:PID:PL 0/1:188,159:347:99:0|1:53209553_G_A:6070,0,10754 19 53209554 rs4085565 G T 6041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-0.859;QD=17.36;ReadPosRankSum=-0.812;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 0/1:188,160:348:99:0|1:53209553_G_A:6070,0,10754 19 53270384 rs1820128 A G 4043.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.332;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.5;MQ=56.86;MQRankSum=-7.689;QD=14.04;ReadPosRankSum=-0.511;SOR=0.664 GT:AD:DP:GQ:PL 0/1:134,154:288:99:4072,0,3393 19 53270460 rs4614842 G A 3643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.5;MQ=56.54;MQRankSum=-7.738;QD=12.27;ReadPosRankSum=-2.804;SOR=0.637 GT:AD:DP:GQ:PL 0/1:154,143:297:99:3672,0,3918 19 53302942 rs9917044 C T 127.77 PASS AC=2;AF=1;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.82;QD=2.03;SOR=0.262 GT:AD:DP:GQ:PGT:PID:PL 1/1:63,0:63:53:1|1:53302899_G_C:156,53,0 19 53303527 rs8107444 A G 8061.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.64;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,247:247:99:8090,741,0 19 53303705 rs10417163 T G 11099.8 PASS AC=2;AF=1;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.74;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,329:329:99:11128,985,0 19 53304563 rs13382164 T C 4831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=4.986;MLEAC=1;MLEAF=0.5;MQ=57.94;MQRankSum=-1.272;QD=14.42;ReadPosRankSum=-0.972;SOR=0.942 GT:AD:DP:GQ:PL 0/1:155,180:335:99:4860,0,4101 19 53311395 rs7257656 G A 9680.77 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.66;QD=29.97;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,323:323:99:9709,969,0 19 53344118 rs10419826 C G 4216.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.856;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=3.294;MLEAC=1;MLEAF=0.5;MQ=51.35;MQRankSum=-13.389;QD=10.92;ReadPosRankSum=-2.224;SOR=0.717 GT:AD:DP:GQ:PL 0/1:229,157:386:99:4245,0,5828 19 53345321 rs8100893 T G 3011.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=-3.121;SOR=0.792 GT:AD:DP:GQ:PL 0/1:147,126:273:99:3040,0,3647 19 53345414 rs8100996 T A 2101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=1.203;SOR=0.619 GT:AD:DP:GQ:PL 0/1:98,87:185:99:2130,0,2419 19 53384185 rs6509701 C T 6652.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.61;SOR=1.218 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6681,613,0 19 53391453 rs34416642 T C 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.066;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.5;MQ=40.65;MQRankSum=0.613;QD=11.37;ReadPosRankSum=0.719;SOR=1.252 GT:AD:DP:GQ:PL 0/1:63,39:102:99:1188,0,1691 19 53391486 rs141803277 A G 2286.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.71;QD=40.84;SOR=8.086 GT:AD:DP:GQ:PL 1/1:0,56:56:99:2315,169,0 19 53391500 rs150173048 G A 1930.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.41;QD=39.4;SOR=7.824 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1959,147,0 19 53391501 rs200273751 T C 707.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.137;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=37.41;MQRankSum=1.833;QD=14.44;ReadPosRankSum=-0.051;SOR=0.455 GT:AD:DP:GQ:PL 0/1:28,21:49:99:736,0,841 19 53391513 rs138627198 G T 1411.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.28;QD=38.16;SOR=7.276 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1440,111,0 19 53409877 rs117577286 T C 3647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.182;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.924;QD=11.51;ReadPosRankSum=-1.086;SOR=0.762 GT:AD:DP:GQ:PL 0/1:172,145:317:99:3676,0,4604 19 53418555 rs13345639 A G 1657.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0;DB;DP=678;ExcessHet=3.0103;FS=13.296;MLEAC=1;MLEAF=0.5;MQ=51.44;MQRankSum=-14.05;QD=2.45;ReadPosRankSum=0.269;SOR=1.276 GT:AD:DP:GQ:PL 0/1:546,131:677:99:1686,0,13886 19 53553125 rs150642692 C T 3846.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.476;ClippingRankSum=0;DB;DP=346;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.5;MQ=42.33;MQRankSum=-4.835;QD=11.15;ReadPosRankSum=1.707;SOR=0.552 GT:AD:DP:GQ:PL 0/1:172,173:345:99:3875,0,3673 19 53553497 rs2195311 G A 424.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.13;QD=30.34;SOR=2.985 GT:AD:DP:GQ:PL 1/1:0,14:14:42:453,42,0 19 53553686 rs12975552 G A 90.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0;DB;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.5;MQ=49.78;MQRankSum=-0.524;QD=15.13;ReadPosRankSum=-0.431;SOR=3.258 GT:AD:DP:GQ:PL 0/1:2,4:6:71:119,0,71 19 53554075 rs1650983 A G 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=1.886;SOR=0.654 GT:AD:DP:GQ:PL 0/1:105,111:216:99:2464,0,2267 19 53554086 rs184324832 G C 2530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.287;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.319;SOR=0.697 GT:AD:DP:GQ:PL 0/1:97,106:203:99:2559,0,2165 19 53572494 rs11665677 G T 3480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.692;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=2.714;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.948;QD=13.29;ReadPosRankSum=-0.871;SOR=0.539 GT:AD:DP:GQ:PL 0/1:125,137:262:99:3509,0,3513 19 53576589 rs329733 C G 3304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=0.119;SOR=0.693 GT:AD:DP:GQ:PL 0/1:132,132:264:99:3333,0,3494 19 53577419 rs8105668 G C 1762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.567;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=-1.059;SOR=1.034 GT:AD:DP:GQ:PL 0/1:84,77:161:99:1791,0,1977 19 53612055 rs10410030 T C 2951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.942;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=5.781;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.517;SOR=1.041 GT:AD:DP:GQ:PL 0/1:145,119:264:99:2980,0,3700 19 53612311 rs4803051 T C 2440.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.03;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=2.053;SOR=0.986 GT:AD:DP:GQ:PL 0/1:117,102:219:99:2469,0,2923 19 53612745 rs1133327 T C 1809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.641;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-1.922;SOR=0.851 GT:AD:DP:GQ:PL 0/1:83,69:152:99:1838,0,2073 19 53612757 rs1054485 T G 1970.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.746;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.037;SOR=0.832 GT:AD:DP:GQ:PL 0/1:87,69:156:99:1999,0,2043 19 53625645 rs34974523 C T 2173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=-0.148;SOR=0.867 GT:AD:DP:GQ:PL 0/1:111,101:212:99:2202,0,2448 19 53645291 rs2195310 T C 1933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.737;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=0.77;SOR=0.629 GT:AD:DP:GQ:PL 0/1:95,75:170:99:1962,0,2420 19 53667804 rs4801958 C T 1976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.512;ClippingRankSum=0;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.97;MQRankSum=1.036;QD=11.91;ReadPosRankSum=-2.649;SOR=0.676 GT:AD:DP:GQ:PL 0/1:81,85:166:99:2005,0,2205 19 53667913 rs12459469 A G 2981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.978;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.04;ReadPosRankSum=0.865;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,84:175:99:0|1:53667913_A_G:3010,0,4690 19 53667940 rs12459471 A G 3148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=3.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.15;ReadPosRankSum=-2.037;SOR=0.92 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,91:195:99:0|1:53667913_A_G:3177,0,5001 19 53669273 rs4801959 T C 5629.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.63;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,178:182:99:5658,534,0 19 53669492 rs12460170 A G 2575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.397;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.905;SOR=0.712 GT:AD:DP:GQ:PL 0/1:101,104:205:99:2604,0,2338 19 53761775 rs112910446 C T 420.77 SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.06;SOR=5.136 GT:AD:DP:GQ:PL 1/1:0,12:12:36:449,36,0 19 53770764 rs112711591 G A 5013.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.45;QD=29.49;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5042,510,0 19 53793175 rs34899413 T C 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.81;ReadPosRankSum=0.609;SOR=0.717 GT:AD:DP:GQ:PL 0/1:86,68:154:99:1539,0,2101 19 53854397 rs10415799 G C 14151.8 PASS AC=2;AF=1;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.65;QD=31.52;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,449:449:99:14180,1345,0 19 53911973 rs10425136 A G 13975.8 PASS AC=2;AF=1;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.92;QD=30.99;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,451:451:99:14004,1350,0 19 53912242 rs10426347 G A 7626.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.75;QD=30.26;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7655,753,0 19 53952885 rs59092521 TC T 3647.73 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.36;QD=34.09;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3685,322,0 19 53952901 rs57791030 A G 764.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.969;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.5;MQ=35.89;MQRankSum=-3.709;QD=6.54;ReadPosRankSum=2.466;SOR=0.903 GT:AD:DP:GQ:PL 0/1:82,35:117:99:793,0,2256 19 53958126 rs2708743 T G 4631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.513;ClippingRankSum=0;DB;DP=348;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.31;ReadPosRankSum=-0.234;SOR=0.659 GT:AD:DP:GQ:PL 0/1:164,184:348:99:4660,0,3719 19 53958263 rs1984432 G A 3850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.191;SOR=0.719 GT:AD:DP:GQ:PL 0/1:163,157:320:99:3879,0,4315 19 53959804 rs4803129 T C 5014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.828;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.914;QD=14.37;ReadPosRankSum=0.496;SOR=0.637 GT:AD:DP:GQ:PL 0/1:160,189:349:99:5043,0,4022 19 53990021 rs201888467 A G 1517.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.371;ClippingRankSum=0;DB;DP=608;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.42;MQRankSum=-4.991;QD=2.5;ReadPosRankSum=1.489;SOR=0.647 GT:AD:DP:GQ:PL 0/1:481,126:607:99:1546,0,12218 19 53994061 rs3859494 A G 4546.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.625;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.3;ReadPosRankSum=-0.246;SOR=0.879 GT:AD:DP:GQ:PL 0/1:156,162:318:99:4575,0,3837 19 53994802 rs10422163 A T 3416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.334;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-1.323;SOR=0.662 GT:AD:DP:GQ:PL 0/1:149,137:286:99:3445,0,3723 19 53995004 rs2708845 G A 5836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0;DB;DP=503;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0.51;QD=11.63;ReadPosRankSum=1.329;SOR=0.694 GT:AD:DP:GQ:PL 0/1:262,240:502:99:5865,0,6652 19 54080144 rs8109631 A G 5767.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.87;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5796,543,0 19 54307322 rs12460528 G A 4217.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4246,455,0 19 54308554 rs4806773 C T 4085.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,146:146:99:4114,434,0 19 54327313 rs34436714 C A 2602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.62;ReadPosRankSum=-0.646;SOR=0.605 GT:AD:DP:GQ:PL 0/1:131,114:245:99:2631,0,3455 19 54327440 rs4539722 G A 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-1.063;SOR=0.894 GT:AD:DP:GQ:PL 0/1:80,72:152:99:1809,0,2152 19 54385820 rs2547362 C T 10696.8 PASS AC=2;AF=1;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,370:370:99:10725,1109,0 19 54394965 rs3745406 T C 7746.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.8;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7775,780,0 19 54395098 rs3745405 G T 5838.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.432 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5867,579,0 19 54515415 rs12980121 G C 2216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.902;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=-0.895;SOR=0.808 GT:AD:DP:GQ:PL 0/1:74,85:159:99:2245,0,1858 19 54561792 rs11669427 G A 6384.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,210:210:99:6413,629,0 19 54600232 rs1657535 A C 7553.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.42;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7582,699,0 19 54606209 rs254260 T G 4209.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.89;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4238,396,0 19 54606405 rs254259 T C 1538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=4.33;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=0.152;SOR=0.851 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1567,0,1626 19 54611560 rs254263 C G 3198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.751;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=0.191;SOR=0.507 GT:AD:DP:GQ:PL 0/1:94,122:216:99:3227,0,2578 19 54613420 rs12609379 G A 938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=-0.423;SOR=0.688 GT:AD:DP:GQ:PL 0/1:68,46:114:99:967,0,1639 19 54632423 rs655240 T C 4861.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.1 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4890,465,0 19 54649671 rs36665 T C 3760.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.58;ReadPosRankSum=1.108;SOR=0.311 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3789,410,0 19 54652203 rs43211 T C 6244.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.86;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6273,587,0 19 54664209 rs36657 G C 7186.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,219:219:99:7215,657,0 19 54664752 rs36656 A C 6811.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.54;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6840,648,0 19 54675643 rs77215230 G A 1978.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=6.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.424;SOR=1.148 GT:AD:DP:GQ:PL 0/1:96,82:178:99:2007,0,2421 19 54676763 rs641738 C T 1908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.14;MQRankSum=1.339;QD=12.39;ReadPosRankSum=1.303;SOR=0.674 GT:AD:DP:GQ:PL 0/1:72,82:154:99:1937,0,1673 19 54676814 . G GC 1816.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0;DP=127;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.5;MQ=60.17;MQRankSum=1.32;QD=15.14;ReadPosRankSum=-0.548;SOR=0.587 GT:AD:DP:GQ:PL 0/1:56,64:122:99:1845,0,1549 19 54677759 rs4806721 T C 7371.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.97;ReadPosRankSum=-0.575;SOR=0.409 GT:AD:DP:GQ:PL 1/1:1,245:246:99:7400,697,0 19 54677897 rs10416555 G A 2424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.734;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.518;SOR=0.721 GT:AD:DP:GQ:PL 0/1:146,96:242:99:2453,0,3958 19 54697079 rs7595 C T 2619.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.176;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=2.806;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.27;ReadPosRankSum=0.206;SOR=0.894 GT:AD:DP:GQ:PL 0/1:144,111:255:99:2648,0,3390 19 54711258 rs2304523 T G 1818.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.604;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.87;MQRankSum=-1.008;QD=13.28;ReadPosRankSum=0.73;SOR=0.688 GT:AD:DP:GQ:PL 0/1:70,67:137:99:1847,0,1710 19 54721203 rs1132612 C T 167.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.5;MQ=57.99;MQRankSum=-11.172;QD=0.99;ReadPosRankSum=-1.542;SOR=1.508 GT:AD:DP:GQ:PGT:PID:PL 0/1:155,15:170:99:0|1:54721203_C_T:196,0,6343 19 54721215 rs1053011 C T 578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.888;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=15.928;MLEAC=1;MLEAF=0.5;MQ=57.3;MQRankSum=-12.335;QD=3.18;ReadPosRankSum=-1.283;SOR=2.636 GT:AD:DP:GQ:PGT:PID:PL 0/1:159,23:182:99:0|1:54721203_C_T:607,0,6601 19 54721216 rs1053008 A G 578.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=7.217;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=11.521;MLEAC=1;MLEAF=0.5;MQ=57.05;MQRankSum=-12.736;QD=3.13;ReadPosRankSum=-2.313;SOR=1.895 GT:AD:DP:GQ:PGT:PID:PL 0/1:158,27:185:99:0|1:54721203_C_T:607,0,6601 19 54721256 rs117030367 A G 3046.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.305;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=17.536;MLEAC=1;MLEAF=0.5;MQ=55.19;MQRankSum=-15.338;QD=11.67;ReadPosRankSum=-2.004;SOR=1.398 GT:AD:DP:GQ:PL 0/1:174,87:261:99:3075,0,4798 19 54721260 rs117334650 G A 2034.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.6;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=9.362;MLEAC=1;MLEAF=0.5;MQ=55.05;MQRankSum=-13.49;QD=7.68;ReadPosRankSum=-1.309;SOR=1.093 GT:AD:DP:GQ:PL 0/1:179,86:265:99:2063,0,7242 19 54721320 rs1053002 C G 2471.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0;DB;DP=365;ExcessHet=3.0103;FS=6.431;MLEAC=1;MLEAF=0.5;MQ=53.16;MQRankSum=-6.809;QD=6.81;ReadPosRankSum=2.278;SOR=0.489 GT:AD:DP:GQ:PL 0/1:234,129:363:99:2500,0,5764 19 54721365 rs200573266 G T 2244.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=51.95;MQRankSum=-2.768;QD=7.36;ReadPosRankSum=-1.582;SOR=0.616 GT:AD:DP:GQ:PL 0/1:187,118:305:99:2273,0,4587 19 54722250 rs1132610 T C 3309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.359;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-0.236;SOR=0.769 GT:AD:DP:GQ:PL 0/1:134,135:269:99:3338,0,3227 19 54723118 rs78889379 G C 1724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.005;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=0.518;SOR=0.549 GT:AD:DP:GQ:PL 0/1:73,62:135:99:1753,0,2099 19 54723738 rs255772 G C 3306.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.127;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.37;ReadPosRankSum=0.59;SOR=0.65 GT:AD:DP:GQ:PGT:PID:PL 0/1:90,90:180:99:0|1:54723738_G_C:3335,0,3488 19 54723750 rs11673281 C G 2246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.391;SOR=0.656 GT:AD:DP:GQ:PL 0/1:94,90:184:99:2275,0,3760 19 54723766 rs114574888 A G 3707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.427;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.82;ReadPosRankSum=0.665;SOR=0.679 GT:AD:DP:GQ:PGT:PID:PL 0/1:96,101:197:99:0|1:54723738_G_C:3736,0,3629 19 54724006 rs4806726 C A 2644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=3.745;MLEAC=1;MLEAF=0.5;MQ=44.92;MQRankSum=-2.201;QD=8.26;ReadPosRankSum=-1.399;SOR=0.524 GT:AD:DP:GQ:PL 0/1:195,125:320:99:2673,0,4566 19 54724430 rs1132606 T A 396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.912;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.51;MQRankSum=-6.033;QD=2.54;ReadPosRankSum=-3.386;SOR=0.731 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,20:156:99:0|1:54724430_T_A:425,0,5606 19 54724431 rs1132605 G A 396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.27;MQRankSum=-6.209;QD=2.58;ReadPosRankSum=-3.199;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,20:154:99:0|1:54724430_T_A:425,0,5606 19 54724443 rs201735825 G A 5349.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.118;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=42.309;MLEAC=1;MLEAF=0.5;MQ=49.98;MQRankSum=4.934;QD=35.9;ReadPosRankSum=4.179;SOR=0.063 GT:AD:DP:GQ:PL 0/1:15,134:149:99:5378,0,189 19 54724457 . T C 5094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=19.827;MLEAC=1;MLEAF=0.5;MQ=48.1;MQRankSum=5.915;QD=32.25;ReadPosRankSum=1.274;SOR=0.117 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,125:158:99:0|1:54724457_T_C:5123,0,1008 19 54724458 . A G 5094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0;DP=158;ExcessHet=3.0103;FS=19.827;MLEAC=1;MLEAF=0.5;MQ=48.1;MQRankSum=5.915;QD=32.25;ReadPosRankSum=0.639;SOR=0.117 GT:AD:DP:GQ:PGT:PID:PL 0/1:33,125:158:99:0|1:54724457_T_C:5123,0,1008 19 54725156 rs181211220 T C 2623.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.94;QD=34.98;SOR=3.826 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2652,225,0 19 54725190 . G A 1419.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.8;QD=35.49;SOR=5.136 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1448,119,0 19 54725798 rs75069054 G T 426.77 SNP_FS_filter;SNP_MQ_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.541;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=61.675;MLEAC=1;MLEAF=0.5;MQ=36.62;MQRankSum=0.044;QD=6.47;ReadPosRankSum=-1.174;SOR=5.992 GT:AD:DP:GQ:PL 0/1:47,19:66:99:455,0,1102 19 54725835 rs201948566 G C 2202.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.86;QD=34.42;SOR=1.963 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2231,192,0 19 54725913 rs199822090 C T 2419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.708;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.5;MQ=52.23;MQRankSum=-2.179;QD=11.63;ReadPosRankSum=0.534;SOR=0.585 GT:AD:DP:GQ:PL 0/1:108,100:208:99:2448,0,4163 19 54725930 rs61480095 C T 3111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.287;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=53.1;MQRankSum=2.271;QD=13.24;ReadPosRankSum=-1.451;SOR=0.657 GT:AD:DP:GQ:PL 0/1:108,127:235:99:3140,0,4015 19 54725995 rs61187720 G A 9226.77 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.37;QD=29.2;SOR=0.785 GT:AD:DP:GQ:PL 1/1:0,316:316:99:9255,941,0 19 54726162 rs56182917 T G 2703.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.07;QD=39.76;SOR=5.61 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2732,204,0 19 54726226 rs75672336 T C 735.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.164;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=12.991;MLEAC=1;MLEAF=0.5;MQ=34.79;MQRankSum=2.264;QD=18.87;ReadPosRankSum=0.465;SOR=0.022 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,21:39:99:0|1:54726226_T_C:764,0,661 19 54726237 rs138323850 C G 345.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.804;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=13.169;MLEAC=1;MLEAF=0.5;MQ=33.73;MQRankSum=-2.131;QD=11.15;ReadPosRankSum=-1.827;SOR=3.89 GT:AD:DP:GQ:PL 0/1:17,14:31:99:374,0,672 19 54726241 rs77279742 C T 643.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.448;ClippingRankSum=0;DB;DP=31;ExcessHet=3.0103;FS=13.169;MLEAC=1;MLEAF=0.5;MQ=33.73;MQRankSum=2.174;QD=20.77;ReadPosRankSum=1.946;SOR=0.021 GT:AD:DP:GQ:PGT:PID:PL 0/1:14,17:31:99:0|1:54726226_T_C:672,0,537 19 54726299 rs80077296 A C 327.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.23;ClippingRankSum=-0;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=38.87;MQRankSum=-0.325;QD=29.8;ReadPosRankSum=1.602;SOR=0.582 GT:AD:DP:GQ:PGT:PID:PL 0/1:2,9:11:40:0|1:54726299_A_C:356,0,40 19 54726324 rs79304773 G C 286.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.35;QD=40.97;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,7:7:21:1|1:54726299_A_C:315,21,0 19 54726630 rs201587814 C T 679.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.944;ClippingRankSum=0;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=30.23;MQRankSum=2.436;QD=17.89;ReadPosRankSum=1.771;SOR=1.329 GT:AD:DP:GQ:PL 0/1:14,24:38:99:708,0,678 19 54726665 rs373978777 G A 1382.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.852;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=15.281;MLEAC=1;MLEAF=0.5;MQ=32.58;MQRankSum=2.804;QD=20.95;ReadPosRankSum=-2.063;SOR=0.03 GT:AD:DP:GQ:PL 0/1:14,52:66:99:1411,0,336 19 54726816 rs80332440 A T 2957.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=10.499;MLEAC=1;MLEAF=0.5;MQ=43.79;MQRankSum=6.907;QD=10.68;ReadPosRankSum=4.746;SOR=0.358 GT:AD:DP:GQ:PL 0/1:146,131:277:99:2986,0,3255 19 54726833 rs149695852 T C 4694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.301;ClippingRankSum=0;DB;DP=301;ExcessHet=3.0103;FS=7.994;MLEAC=1;MLEAF=0.5;MQ=43.18;MQRankSum=6.961;QD=15.6;ReadPosRankSum=1.835;SOR=0.412 GT:AD:DP:GQ:PGT:PID:PL 0/1:174,127:301:99:0|1:54726833_T_C:4723,0,7134 19 54726839 rs141453251 C T 4748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.774;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.5;MQ=43.14;MQRankSum=7.144;QD=15.17;ReadPosRankSum=1.289;SOR=0.491 GT:AD:DP:GQ:PGT:PID:PL 0/1:188,125:313:99:0|1:54726833_T_C:4777,0,7707 19 54726843 rs138124247 C G 4695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.744;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=3.725;MLEAC=1;MLEAF=0.5;MQ=43.19;MQRankSum=6.952;QD=14.49;ReadPosRankSum=0.531;SOR=0.518 GT:AD:DP:GQ:PGT:PID:PL 0/1:199,125:324:99:0|1:54726833_T_C:4724,0,7775 19 54726861 rs114813697 C T 2432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.358;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=4.407;MLEAC=1;MLEAF=0.5;MQ=42.82;MQRankSum=7.738;QD=7.09;ReadPosRankSum=-1.231;SOR=0.73 GT:AD:DP:GQ:PL 0/1:226,117:343:99:2461,0,6143 19 54743824 rs199826565 T G 1382.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.5;MQ=38.24;MQRankSum=-1.887;QD=6.29;ReadPosRankSum=0.292;SOR=0.516 GT:AD:DP:GQ:PL 0/1:149,71:220:99:1411,0,3673 19 54744133 . G A 3038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.791;ClippingRankSum=0;DP=372;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.5;MQ=54.8;MQRankSum=-12.429;QD=8.17;ReadPosRankSum=0.09;SOR=0.747 GT:AD:DP:GQ:PGT:PID:PL 0/1:281,91:372:99:0|1:54744129_G_A:3067,0,15161 19 54744139 . A G 3025.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0;DP=378;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.5;MQ=55.08;MQRankSum=-13.144;QD=8;ReadPosRankSum=0.466;SOR=0.78 GT:AD:DP:GQ:PGT:PID:PL 0/1:286,92:378:99:0|1:54744129_G_A:3054,0,15455 19 54744141 . C G 3052.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.24;ClippingRankSum=0;DP=382;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.5;MQ=55.06;MQRankSum=-13.022;QD=8.03;ReadPosRankSum=0.477;SOR=0.845 GT:AD:DP:GQ:PL 0/1:287,93:382:99:3081,0,15510 19 54744163 rs3193486 T C 4083.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.663;ClippingRankSum=0;DB;DP=457;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.5;MQ=55.45;MQRankSum=-17.681;QD=8.96;ReadPosRankSum=1.098;SOR=0.976 GT:AD:DP:GQ:PL 0/1:331,125:456:99:4112,0,14456 19 54744195 rs1132604 G A 4944.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0;DB;DP=588;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.5;MQ=53.88;MQRankSum=-14.652;QD=8.41;ReadPosRankSum=-1.216;SOR=0.948 GT:AD:DP:GQ:PL 0/1:417,171:588:99:4973,0,11558 19 54744209 rs8105096 T C 3416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.704;ClippingRankSum=0;DB;DP=613;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.5;MQ=52.77;MQRankSum=-12.019;QD=5.57;ReadPosRankSum=0.46;SOR=0.483 GT:AD:DP:GQ:PGT:PID:PL 0/1:496,117:613:99:0|1:54744209_T_C:3445,0,23488 19 54744210 rs8104206 A G 3416.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=6.757;ClippingRankSum=0;DB;DP=615;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.5;MQ=52.61;MQRankSum=-11.887;QD=5.56;ReadPosRankSum=-0.215;SOR=0.519 GT:AD:DP:GQ:PGT:PID:PL 0/1:496,119:615:99:0|1:54744209_T_C:3445,0,23488 19 54744361 rs2361801 A C 5564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.046;ClippingRankSum=0;DB;DP=808;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.5;MQ=59.07;MQRankSum=-1.626;QD=6.9;ReadPosRankSum=0.574;SOR=0.762 GT:AD:DP:GQ:PGT:PID:PL 0/1:622,184:806:99:0|1:54744361_A_C:5593,0,29330 19 54744387 rs71263238 C T 5314.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0;DB;DP=758;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.5;MQ=57.93;MQRankSum=-2.068;QD=7.02;ReadPosRankSum=0.546;SOR=0.872 GT:AD:DP:GQ:PGT:PID:PL 0/1:582,175:757:99:0|1:54744361_A_C:5343,0,27705 19 54744710 rs75031467 C T 2151.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.025;ClippingRankSum=0;DB;DP=1134;ExcessHet=3.0103;FS=0.9;MLEAC=1;MLEAF=0.5;MQ=52.81;MQRankSum=-16.84;QD=1.9;ReadPosRankSum=2.864;SOR=0.821 GT:AD:DP:GQ:PGT:PID:PL 0/1:1007,126:1133:99:0|1:54744710_C_T:2180,0,43200 19 54744711 rs77137660 C G 2180.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.662;ClippingRankSum=0;DB;DP=1157;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.5;MQ=52.93;MQRankSum=-17.013;QD=1.89;ReadPosRankSum=3.01;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 0/1:1029,127:1156:99:0|1:54744710_C_T:2209,0,43287 19 54744722 rs56257556 T C 2401.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=10.272;ClippingRankSum=0;DB;DP=1261;ExcessHet=3.0103;FS=0.88;MLEAC=1;MLEAF=0.5;MQ=53.85;MQRankSum=-17.148;QD=1.91;ReadPosRankSum=0.91;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL 0/1:1117,143:1260:99:0|1:54744710_C_T:2430,0,44756 19 54744750 rs201120762 G A 4660.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0;DB;DP=1434;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.5;MQ=55.39;MQRankSum=3.916;QD=3.25;ReadPosRankSum=0.783;SOR=0.55 GT:AD:DP:GQ:PL 0/1:1121,312:1433:99:4689,0,28954 19 54744794 rs76869766 G A 4320.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.485;ClippingRankSum=0;DB;DP=1491;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=-23.662;QD=2.9;ReadPosRankSum=1.445;SOR=0.646 GT:AD:DP:GQ:PGT:PID:PL 0/1:1292,198:1490:99:0|1:54744794_G_A:4349,0,53133 19 54744799 rs1052975 G C 4312.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.112;ClippingRankSum=0;DB;DP=1465;ExcessHet=3.0103;FS=0.8;MLEAC=1;MLEAF=0.5;MQ=58.16;MQRankSum=-21.813;QD=2.95;ReadPosRankSum=2.596;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:1270,194:1464:99:0|1:54744794_G_A:4341,0,52708 19 54744942 rs188780802 G A 37.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.63;ClippingRankSum=0;DB;DP=1308;ExcessHet=3.0103;FS=5.906;MLEAC=1;MLEAF=0.5;MQ=42.83;MQRankSum=-9.08;QD=0.03;ReadPosRankSum=-0.411;SOR=0.966 GT:AD:DP:GQ:PL 0/1:1157,150:1307:66:66,0,31135 19 54745507 rs61734496 T C 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=9.618;ClippingRankSum=0;DB;DP=475;ExcessHet=3.0103;FS=7.692;MLEAC=1;MLEAF=0.5;MQ=49.38;MQRankSum=-11.196;QD=3.96;ReadPosRankSum=-2.84;SOR=1.157 GT:AD:DP:GQ:PGT:PID:PL 0/1:400,75:475:99:0|1:54745507_T_C:1910,0,17406 19 54745508 rs61734497 G A 1881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.145;ClippingRankSum=0;DB;DP=477;ExcessHet=3.0103;FS=9.479;MLEAC=1;MLEAF=0.5;MQ=49.31;MQRankSum=-11.127;QD=3.95;ReadPosRankSum=-2.73;SOR=1.217 GT:AD:DP:GQ:PGT:PID:PL 0/1:403,74:477:99:0|1:54745507_T_C:1910,0,17406 19 54745550 rs71257443 G T 1003.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.394;ClippingRankSum=0;DB;DP=477;ExcessHet=3.0103;FS=7.837;MLEAC=1;MLEAF=0.5;MQ=48.36;MQRankSum=-10.596;QD=2.1;ReadPosRankSum=-1.646;SOR=1.292 GT:AD:DP:GQ:PL 0/1:404,73:477:99:1032,0,11509 19 54746051 rs620207 A C 11254.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.337;ClippingRankSum=0;DB;DP=966;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.72;MQRankSum=-6.303;QD=11.69;ReadPosRankSum=0.095;SOR=0.719 GT:AD:DP:GQ:PL 0/1:516,447:963:99:11283,0,13347 19 54746380 rs150628522 C T 404.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.785;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.5;MQ=31.18;MQRankSum=-0.942;QD=2.01;ReadPosRankSum=-0.217;SOR=0.428 GT:AD:DP:GQ:PL 0/1:170,31:201:99:433,0,5179 19 54746611 rs146887808 T C 607.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.694;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=79.237;MLEAC=1;MLEAF=0.5;MQ=47.44;MQRankSum=-9.707;QD=1.74;ReadPosRankSum=-2.098;SOR=4.973 GT:AD:DP:GQ:PL 0/1:295,54:349:99:636,0,7735 19 54754752 rs433291 T C 8090.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.36;QD=31.85;SOR=1.536 GT:AD:DP:GQ:PL 1/1:0,254:254:99:8119,760,0 19 54755911 rs12977057 C T 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.178;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.66;MQRankSum=-6.49;QD=11.9;ReadPosRankSum=2.158;SOR=0.662 GT:AD:DP:GQ:PL 0/1:103,116:219:99:2635,0,2659 19 54755922 rs12977062 C T 5052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.71;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.83;MQRankSum=-6.451;QD=21.5;ReadPosRankSum=2.196;SOR=0.709 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,127:235:99:0|1:54755922_C_T:5081,0,4122 19 54755923 rs12976868 A G 5052.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.5;MQ=58.84;MQRankSum=-6.341;QD=21.32;ReadPosRankSum=1.812;SOR=0.64 GT:AD:DP:GQ:PGT:PID:PL 0/1:107,130:237:99:0|1:54755922_C_T:5081,0,4122 19 54755978 rs45600235 C G 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.932;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=4.375;QD=10.28;ReadPosRankSum=1.159;SOR=0.738 GT:AD:DP:GQ:PL 0/1:130,93:223:99:2320,0,2972 19 54756221 rs3843753 T C 1621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.858;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=1.869;SOR=0.493 GT:AD:DP:GQ:PL 0/1:82,62:144:99:1650,0,2199 19 54759361 rs12975366 T C 3814.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.175;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.033;SOR=0.63 GT:AD:DP:GQ:PL 0/1:169,152:321:99:3843,0,4224 19 54781466 rs3859538 C G 3892.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.388;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.2;MQRankSum=4.245;QD=17;ReadPosRankSum=-0.464;SOR=0.684 GT:AD:DP:GQ:PL 0/1:84,145:229:99:3921,0,1978 19 54782407 rs1128646 C T 4194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.11;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-1.141;QD=15.2;ReadPosRankSum=1.223;SOR=0.691 GT:AD:DP:GQ:PGT:PID:PL 0/1:157,119:276:99:0|1:54782407_C_T:4223,0,7793 19 54782420 rs11666104 G A 3836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.185;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.6;MQRankSum=-1.097;QD=16.83;ReadPosRankSum=0.857;SOR=0.69 GT:AD:DP:GQ:PGT:PID:PL 0/1:127,101:228:99:0|1:54782407_C_T:3865,0,7159 19 54782704 rs7247451 G C 9916.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0;DB;DP=613;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.21;MQRankSum=-16.242;QD=16.2;ReadPosRankSum=-2.755;SOR=0.658 GT:AD:DP:GQ:PGT:PID:PL 0/1:346,266:612:99:0|1:54782704_G_C:9945,0,16107 19 54782710 rs7247208 A G 9749.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.585;ClippingRankSum=0;DB;DP=606;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.5;MQ=56.4;MQRankSum=-15.3;QD=16.12;ReadPosRankSum=-1.637;SOR=0.663 GT:AD:DP:GQ:PGT:PID:PL 0/1:350,255:605:99:0|1:54782704_G_C:9778,0,16220 19 54782724 rs7247538 G A 5808.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0;DB;DP=601;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.5;MQ=56.4;MQRankSum=-14.944;QD=9.68;ReadPosRankSum=-3.212;SOR=0.725 GT:AD:DP:GQ:PL 0/1:344,256:600:99:5837,0,8681 19 54782919 rs386056 C T 5188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.143;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.139;QD=13.37;ReadPosRankSum=-0.939;SOR=0.558 GT:AD:DP:GQ:PL 0/1:176,212:388:99:5217,0,4182 19 54783375 rs373032 T A 13771.8 PASS AC=2;AF=1;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=30.88;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,446:446:99:13800,1336,0 19 54783521 rs383925 C T 3414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=2.289;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-1.127;QD=9.65;ReadPosRankSum=-0.532;SOR=0.572 GT:AD:DP:GQ:PL 0/1:199,155:354:99:3443,0,4938 19 54783923 rs366337 A G 4494.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.58;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4523,390,0 19 54784130 rs383369 T C 5224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.288;ClippingRankSum=0;DB;DP=460;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=1.347;QD=11.41;ReadPosRankSum=0.809;SOR=0.681 GT:AD:DP:GQ:PL 0/1:241,217:458:99:5253,0,5726 19 54848684 rs8105624 G A 5731.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0;DB;DP=629;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0.573;QD=9.13;ReadPosRankSum=0.785;SOR=0.801 GT:AD:DP:GQ:PL 0/1:361,267:628:99:5760,0,9143 19 54848986 rs36068997 C T 5261.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.3;SOR=1.765 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5290,473,0 19 54849942 rs2241384 G A 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.295;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=7.032;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.47;SOR=1.239 GT:AD:DP:GQ:PL 0/1:73,87:160:99:2246,0,2088 19 54867572 rs7257187 C T 524.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.75;ReadPosRankSum=1.268;SOR=0.518 GT:AD:DP:GQ:PL 0/1:34,26:60:99:553,0,810 19 54871664 rs74463408 G C 2214.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=44.04;MQRankSum=-3.382;QD=11.66;ReadPosRankSum=-0.723;SOR=0.687 GT:AD:DP:GQ:PL 0/1:88,102:190:99:2243,0,1815 19 54881850 rs77507448 G T 330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.42;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=1;MLEAC=1;MLEAF=0.5;MQ=54.75;MQRankSum=-7.261;QD=4.86;ReadPosRankSum=-0.385;SOR=0.859 GT:AD:DP:GQ:PL 0/1:47,21:68:99:359,0,1144 19 54946784 rs3745420 A G 2746.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.683;SOR=0.673 GT:AD:DP:GQ:PL 0/1:115,105:220:99:2775,0,2863 19 54965860 rs3813148 G A 2057.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.443;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.993;SOR=0.517 GT:AD:DP:GQ:PL 0/1:97,89:186:99:2086,0,2594 19 54966557 rs35061854 G C 2308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.043;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=4.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.71;ReadPosRankSum=-0.149;SOR=0.414 GT:AD:DP:GQ:PL 0/1:63,94:157:99:2337,0,1435 19 54966579 rs889147 C G 2318.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.97;ReadPosRankSum=2.367;SOR=0.457 GT:AD:DP:GQ:PL 0/1:71,95:166:99:2347,0,1627 19 54967803 rs76543489 A G 2603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.764;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.56;ReadPosRankSum=1.105;SOR=0.737 GT:AD:DP:GQ:PL 0/1:88,104:192:99:2632,0,2053 19 54971957 . C T 1097.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.752;SOR=0.742 GT:AD:DP:GQ:PL 0/1:57,45:102:99:1126,0,1738 19 54973280 rs10423424 C G 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.159;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.421;SOR=0.649 GT:AD:DP:GQ:PL 0/1:87,80:167:99:2084,0,2249 19 54974318 rs10406453 T C 3959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.342;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=1.706;SOR=0.785 GT:AD:DP:GQ:PL 0/1:149,152:301:99:3988,0,3822 19 54976403 rs78611575 G A 2689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.763;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.758;SOR=0.622 GT:AD:DP:GQ:PL 0/1:87,109:196:99:2718,0,2328 19 55019402 rs2277974 A G 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.585;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=0.921;QD=13.8;ReadPosRankSum=1.011;SOR=0.954 GT:AD:DP:GQ:PL 0/1:76,92:168:99:2346,0,1680 19 55020233 rs149731338 C T 1705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.663;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=44.75;MQRankSum=-4.354;QD=10.93;ReadPosRankSum=-0.073;SOR=0.76 GT:AD:DP:GQ:PL 0/1:79,77:156:99:1734,0,1744 19 55021777 rs62131570 T A 616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.744;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=7.65;MLEAC=1;MLEAF=0.5;MQ=53.1;MQRankSum=2.166;QD=7.34;ReadPosRankSum=-0.04;SOR=0.894 GT:AD:DP:GQ:PL 0/1:55,29:84:99:645,0,1346 19 55086775 rs1052120 C T 13029.8 PASS AC=2;AF=1;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.8;QD=29.82;SOR=1.147 GT:AD:DP:GQ:PL 1/1:0,437:437:99:13058,1309,0 19 55144141 rs10425827 A G 1608.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.861;ClippingRankSum=0;DB;DP=821;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.83;MQRankSum=-23.828;QD=1.96;ReadPosRankSum=2.97;SOR=0.75 GT:AD:DP:GQ:PGT:PID:PL 0/1:727,93:820:99:0|1:55144141_A_G:1637,0,30173 19 55144147 rs74906426 C T 1570.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.319;ClippingRankSum=0;DB;DP=835;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.87;MQRankSum=-24.036;QD=1.88;ReadPosRankSum=4.292;SOR=0.75 GT:AD:DP:GQ:PGT:PID:PL 0/1:741,93:834:99:0|1:55144141_A_G:1599,0,30455 19 55144186 rs272423 C T 18007.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=4.516;ClippingRankSum=0;DB;DP=814;ExcessHet=3.0103;FS=0.852;MLEAC=2;MLEAF=1;MQ=57.72;MQRankSum=23.478;QD=22.12;ReadPosRankSum=-3.273;SOR=0.84 GT:AD:DP:GQ:PL 1/1:94,720:814:99:18036,106,0 19 55144208 rs201552016 G A 88.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.391;ClippingRankSum=0;DB;DP=734;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.5;MQ=57.62;MQRankSum=-22.241;QD=0.12;ReadPosRankSum=-2.565;SOR=0.518 GT:AD:DP:GQ:PL 0/1:643,91:734:99:117,0,16893 19 55175740 rs3745871 C T 2812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.88;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=4.078;MLEAC=1;MLEAF=0.5;MQ=60.33;MQRankSum=-0.225;QD=14.35;ReadPosRankSum=-1.38;SOR=0.972 GT:AD:DP:GQ:PL 0/1:89,107:196:99:2841,0,2433 19 55176262 rs731170 A G 4443.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4472,471,0 19 55178162 rs11574576 A G 1869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.866;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.844;SOR=0.763 GT:AD:DP:GQ:PL 0/1:97,81:178:99:1898,0,2168 19 55179364 rs1048801 A G 7215.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=10.393;MLEAC=2;MLEAF=1;MQ=58.5;MQRankSum=5.727;QD=28.63;ReadPosRankSum=2.713;SOR=0.059 GT:AD:DP:GQ:PL 1/1:6,246:252:99:7244,479,0 19 55237603 rs200419879 G A 66.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=22.09;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:94,9,0 19 55239168 rs151236204 G T 3152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DB;DP=304;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.5;MQ=40.68;MQRankSum=-3.461;QD=10.37;ReadPosRankSum=-0.754;SOR=0.827 GT:AD:DP:GQ:PL 0/1:148,156:304:99:3181,0,2947 19 55239342 rs368077219 G A 786.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=33.66;MQRankSum=-0.011;QD=14.57;ReadPosRankSum=-0.151;SOR=0.708 GT:AD:DP:GQ:PL 0/1:22,32:54:99:815,0,499 19 55246812 rs180893263 G C 815.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.68;QD=30.21;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,27:27:81:844,81,0 19 55247353 rs79729165 C A 127.9 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=30.8;QD=25.58;SOR=3.611 GT:AD:DP:GQ:PL 1/1:0,5:5:15:156,15,0 19 55247449 rs199554226 A T 47.28 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.16;QD=15.76;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,3:3:9:75,9,0 19 55250036 rs116925556 T C 511.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.63;QD=42.65;SOR=5.136 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,12:12:36:1|1:55250036_T_C:540,36,0 19 55250061 rs3810344 C A 557.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.81;QD=39.84;SOR=3.912 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,14:14:42:1|1:55250036_T_C:586,42,0 19 55253450 rs202032116 T G 667.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.29;QD=27.82;SOR=2.124 GT:AD:DP:GQ:PL 1/1:0,24:24:72:696,72,0 19 55253521 rs149224427 C G 1192.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.19;QD=29.82;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1221,120,0 19 55253567 rs138897134 A G 2233.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.56;QD=28.28;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2262,236,0 19 55255326 rs200426472 C T 475.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.677;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=7.272;MLEAC=1;MLEAF=0.5;MQ=28.33;MQRankSum=-2.243;QD=7;ReadPosRankSum=1.759;SOR=0.195 GT:AD:DP:GQ:PL 0/1:40,28:68:99:504,0,990 19 55255357 rs201504521 G C 451.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.326;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=14.29;MLEAC=1;MLEAF=0.5;MQ=30.95;MQRankSum=-4.231;QD=4.66;ReadPosRankSum=3.087;SOR=0.137 GT:AD:DP:GQ:PL 0/1:66,31:97:99:480,0,1650 19 55255454 rs201431907 A G 2603.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.58;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=12.445;MLEAC=2;MLEAF=1;MQ=32.53;MQRankSum=3.507;QD=24.11;ReadPosRankSum=1.632;SOR=0.139 GT:AD:DP:GQ:PL 1/1:5,103:108:73:2632,73,0 19 55258778 rs34843749 G A 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.516;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.5;MQ=42.29;MQRankSum=1.848;QD=13.86;ReadPosRankSum=-2.372;SOR=0.992 GT:AD:DP:GQ:PL 0/1:35,55:90:99:1276,0,581 19 55263802 rs35100980 C G 5700.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.66;QD=31.5;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5729,543,0 19 55263898 rs1049267 G A 4702.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.52;QD=29.95;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4731,471,0 19 55284824 rs139078925 G C 338.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.134;ClippingRankSum=0;DB;DP=21;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=28.49;MQRankSum=1.209;QD=16.13;ReadPosRankSum=-0.678;SOR=0.42 GT:AD:DP:GQ:PL 0/1:8,13:21:99:367,0,191 19 55284858 rs116929762 G A 1178.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.41;QD=31.86;SOR=5.838 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1207,111,0 19 55286650 rs11673144 T C 3231.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.52;QD=32.64;SOR=1.09 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3260,297,0 19 55286665 . T A 290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0;DP=124;ExcessHet=3.0103;FS=24.12;MLEAC=1;MLEAF=0.5;MQ=40.78;MQRankSum=-1.19;QD=2.34;ReadPosRankSum=-2.978;SOR=3.037 GT:AD:DP:GQ:PL 0/1:102,22:124:99:319,0,3051 19 55286767 . G T 1520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.023;ClippingRankSum=0;DP=252;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.5;MQ=54.81;MQRankSum=-11.472;QD=6.06;ReadPosRankSum=3.732;SOR=0.674 GT:AD:DP:GQ:PGT:PID:PL 0/1:199,52:251:99:0|1:55286767_G_T:1549,0,10549 19 55286770 . C G 1514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.685;ClippingRankSum=0;DP=255;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.5;MQ=54.76;MQRankSum=-11.104;QD=5.96;ReadPosRankSum=2.847;SOR=0.708 GT:AD:DP:GQ:PGT:PID:PL 0/1:203,51:254:99:0|1:55286767_G_T:1543,0,10633 19 55286772 . AAG A 1477.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.908;ClippingRankSum=0;DP=255;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.5;MQ=54.89;MQRankSum=-11.052;QD=5.82;ReadPosRankSum=2.338;SOR=0.767 GT:AD:DP:GQ:PGT:PID:PL 0/1:204,50:254:99:0|1:55286767_G_T:1515,0,10691 19 55286775 . G GCA 1441.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.8;ClippingRankSum=0;DP=257;ExcessHet=3.0103;FS=3.621;MLEAC=1;MLEAF=0.5;MQ=55;MQRankSum=-11.244;QD=5.63;ReadPosRankSum=1.96;SOR=0.782 GT:AD:DP:GQ:PGT:PID:PL 0/1:206,50:256:99:0|1:55286767_G_T:1479,0,10610 19 55286795 rs12982263 T C 1026.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=4.817;MLEAC=1;MLEAF=0.5;MQ=55.7;MQRankSum=-15.25;QD=3.69;ReadPosRankSum=-5.601;SOR=0.907 GT:AD:DP:GQ:PL 0/1:210,68:278:99:1055,0,5325 19 55286822 rs28465191 C A 967.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=30.193;MLEAC=1;MLEAF=0.5;MQ=55.19;MQRankSum=-10.801;QD=3.62;ReadPosRankSum=-1.395;SOR=1.924 GT:AD:DP:GQ:PGT:PID:PL 0/1:227,40:267:99:0|1:55286822_C_A:996,0,10007 19 55286828 rs376821145 G A 1080.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=21.353;MLEAC=1;MLEAF=0.5;MQ=55.45;MQRankSum=-11.972;QD=4.38;ReadPosRankSum=-1.358;SOR=1.797 GT:AD:DP:GQ:PGT:PID:PL 0/1:203,44:247:99:0|1:55286822_C_A:1109,0,9832 19 55286864 rs77397437 A C 949.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=17.883;MLEAC=1;MLEAF=0.5;MQ=52.9;MQRankSum=-10.725;QD=4.18;ReadPosRankSum=3.476;SOR=1.265 GT:AD:DP:GQ:PL 0/1:167,60:227:99:978,0,4243 19 55294454 . C T 40.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.029;ClippingRankSum=-0;DP=8;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=26.32;MQRankSum=0.489;QD=5.1;ReadPosRankSum=-0.566;SOR=1.27 GT:AD:DP:GQ:PL 0/1:5,3:8:69:69,0,128 19 55294927 . A G 2347.77 PASS AC=2;AF=1;AN=2;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40.33;QD=28.98;SOR=1.854 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2376,243,0 19 55317456 rs149046820 G A 503.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.07;QD=33.58;SOR=5.549 GT:AD:DP:GQ:PL 1/1:0,15:15:45:532,45,0 19 55317669 rs200231256 C G 98.28 PASS AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=40;QD=32.76;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:126,9,0 19 55327960 rs150270584 C T 36.74 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=18.37;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:64,6,0 19 55329783 rs642893 A G 690.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.09;QD=31.4;SOR=6.273 GT:AD:DP:GQ:PL 1/1:0,22:22:65:719,65,0 19 55329901 rs643347 A G 3991.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37.45;QD=31.68;SOR=2.538 GT:AD:DP:GQ:PL 1/1:0,126:126:99:4020,378,0 19 55329922 rs1049150 A T 5565.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.32;QD=29.92;SOR=1.754 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5594,557,0 19 55333096 rs181336705 T C 8054.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=44.56;QD=31.84;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8083,759,0 19 55333139 rs202189595 G C 1886.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.774;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=3.04;MLEAC=1;MLEAF=0.5;MQ=37.11;MQRankSum=0.955;QD=12.02;ReadPosRankSum=0.305;SOR=0.487 GT:AD:DP:GQ:PL 0/1:77,80:157:99:1915,0,1987 19 55350963 . T TCCCGGAGCTCCTATGACATGTA 4421.73 PASS AC=2;AF=1;AN=2;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.02;QD=81.88;SOR=0.846 GT:AD:DP:GQ:PL 1/1:0,54:54:99:4459,301,0 19 55365320 rs145326846 G T 289.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=28.98;SOR=4.804 GT:AD:DP:GQ:PL 1/1:0,10:10:30:318,30,0 19 55396900 rs1865096 A G 1485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.403;SOR=0.804 GT:AD:DP:GQ:PL 0/1:54,65:119:99:1514,0,1400 19 55481669 rs269913 T C 1483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=0.907;SOR=0.588 GT:AD:DP:GQ:PL 0/1:72,61:133:99:1512,0,1940 19 55485899 rs2217659 G A 496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.03;ReadPosRankSum=0.328;SOR=0.665 GT:AD:DP:GQ:PL 0/1:31,24:55:99:525,0,781 19 55494320 rs147207921 G A 3802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.712;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=3.237;MLEAC=1;MLEAF=0.5;MQ=46.49;MQRankSum=-7.285;QD=9.63;ReadPosRankSum=-0.113;SOR=0.552 GT:AD:DP:GQ:PL 0/1:232,163:395:99:3831,0,5775 19 55494612 rs61735082 A G 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.338;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.5;MQ=55.78;MQRankSum=-7.023;QD=10.12;ReadPosRankSum=-3.608;SOR=0.551 GT:AD:DP:GQ:PGT:PID:PL 0/1:127,48:175:99:0|1:55494612_A_G:1799,0,15372 19 55494631 rs61735083 A G 1895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.156;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=8.443;MLEAC=1;MLEAF=0.5;MQ=58.13;MQRankSum=-5.742;QD=10.59;ReadPosRankSum=-1.666;SOR=1.287 GT:AD:DP:GQ:PGT:PID:PL 0/1:126,53:179:99:0|1:55494612_A_G:1924,0,17162 19 55494632 rs3745905 A G 1895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.026;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=8.518;MLEAC=1;MLEAF=0.5;MQ=58.23;MQRankSum=-6.122;QD=10.65;ReadPosRankSum=-1.616;SOR=1.278 GT:AD:DP:GQ:PGT:PID:PL 0/1:125,53:178:99:0|1:55494612_A_G:1924,0,17162 19 55494638 rs61735084 T C 2258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.728;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=10.812;MLEAC=1;MLEAF=0.5;MQ=58.58;MQRankSum=-6.342;QD=12.41;ReadPosRankSum=-1.68;SOR=1.338 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,60:182:99:0|1:55494612_A_G:2287,0,16861 19 55494651 rs34804158 A G 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=11.592;MLEAC=1;MLEAF=0.5;MQ=58.62;MQRankSum=-5.967;QD=12.19;ReadPosRankSum=0.023;SOR=1.168 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,67:188:99:0|1:55494612_A_G:2320,0,16258 19 55494740 rs10412915 T C 3101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.13;MLEAC=1;MLEAF=0.5;MQ=59.69;MQRankSum=-1.935;QD=14.63;ReadPosRankSum=0.936;SOR=0.505 GT:AD:DP:GQ:PL 0/1:90,122:212:99:3130,0,2373 19 55494881 rs11672113 C G 3037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.573;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=1.594;SOR=0.528 GT:AD:DP:GQ:PL 0/1:120,119:239:99:3066,0,2920 19 55496494 rs61733928 C T 1553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.39;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.83;SOR=0.655 GT:AD:DP:GQ:PL 0/1:80,76:156:99:1582,0,2069 19 55497506 rs71367132 C T 682.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.28;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.03;ReadPosRankSum=1.956;SOR=0.581 GT:AD:DP:GQ:PL 0/1:51,34:85:99:711,0,1246 19 55501579 rs1654495 A C 2998.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.24;SOR=1.514 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3027,288,0 19 55512137 rs12768 C A 3083.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.78;SOR=1.138 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3112,332,0 19 55512232 rs1043673 C A 1058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.2;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.752;SOR=0.684 GT:AD:DP:GQ:PL 0/1:55,46:101:99:1087,0,1459 19 55525497 rs1671150 A G 147.03 PASS AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.76;SOR=3.258 GT:AD:DP:GQ:PL 1/1:0,4:4:12:175,12,0 19 55525596 rs1654412 T C 498.77 PASS AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.25;SOR=3.126 GT:AD:DP:GQ:PL 1/1:0,15:15:45:527,45,0 19 55525818 rs41275822 C T 1435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=0.45;SOR=0.48 GT:AD:DP:GQ:PL 0/1:42,59:101:99:1464,0,1019 19 55525894 rs1671151 G A 3411.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.956 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3440,327,0 19 55526345 rs1671152 T G 6707.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.45;SOR=0.744 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,158:158:99:1|1:55526345_T_G:6736,475,0 19 55526359 rs1654413 A T 6537.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.04;SOR=0.842 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,142:142:99:1|1:55526345_T_G:6566,442,0 19 55526373 rs2304166 G C 5738.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.49;SOR=0.949 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,129:129:99:1|1:55526345_T_G:5767,391,0 19 55527081 rs2304167 C T 1518.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1547,144,0 19 55530035 rs1654416 C T 1200.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.68;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1229,134,0 19 55536595 rs1613662 G A 1945.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1974,192,0 19 55538980 rs1654425 T C 3513.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.054 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3542,342,0 19 55539061 rs892089 A G 3647.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.86;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3676,333,0 19 55539072 rs892090 T G 3793.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3822,363,0 19 55570574 rs1654447 A G 3525.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.9;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3554,366,0 19 55574403 rs1654455 C G 3127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=4.867;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=0.931;QD=14.68;ReadPosRankSum=-0.353;SOR=0.482 GT:AD:DP:GQ:PGT:PID:PL 0/1:128,85:213:99:0|1:55574403_C_G:3156,0,5115 19 55574412 rs1654456 G T 3147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=6.836;MLEAC=1;MLEAF=0.5;MQ=60.31;MQRankSum=1.327;QD=14.99;ReadPosRankSum=-1.235;SOR=0.445 GT:AD:DP:GQ:PGT:PID:PL 0/1:125,85:210:99:0|1:55574403_C_G:3176,0,5038 19 55587822 rs12609976 G A 1887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.492;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.945;SOR=0.693 GT:AD:DP:GQ:PL 0/1:85,85:170:99:1916,0,1895 19 55594996 rs1628576 C G 3712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.133;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.82;ReadPosRankSum=0.177;SOR=0.77 GT:AD:DP:GQ:PL 0/1:163,151:314:99:3741,0,4090 19 55598724 rs1054940 A G 7137.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7166,699,0 19 55605704 rs3803899 A C 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.123;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-0.111;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,57:142:99:0|1:55605704_A_C:2047,0,4255 19 55605705 rs3803900 C T 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.688;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.22;ReadPosRankSum=-0.111;SOR=0.773 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,57:142:99:0|1:55605704_A_C:2047,0,4255 19 55614923 rs2532060 T C 2541.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.714;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=4.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.687;SOR=1.009 GT:AD:DP:GQ:PL 0/1:103,99:202:99:2570,0,2403 19 55644325 rs890868 A C 3552.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3581,354,0 19 55665410 rs3729841 C T 2064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=1.323;SOR=0.495 GT:AD:DP:GQ:PL 0/1:106,88:194:99:2093,0,2792 19 55665584 rs7252610 A C 4134.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=1.647 GT:AD:DP:GQ:PL 1/1:0,126:126:99:4163,378,0 19 55668509 rs3729836 A T 2293.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=7.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.52;ReadPosRankSum=-1.574;SOR=1.26 GT:AD:DP:GQ:PL 0/1:74,84:158:99:2322,0,2051 19 55670825 rs28377509 T C 4385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.943;ClippingRankSum=0;DB;DP=344;ExcessHet=3.0103;FS=6.28;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.718;SOR=0.671 GT:AD:DP:GQ:PL 0/1:172,171:343:99:4414,0,4135 19 55671337 rs890872 C T 4172.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4201,396,0 19 55672470 rs2365725 T C 5587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=351;ExcessHet=3.0103;FS=0.82;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=0.365;SOR=0.752 GT:AD:DP:GQ:PL 0/1:142,208:350:99:5616,0,3636 19 55672569 rs7260371 G A 5472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.643;ClippingRankSum=0;DB;DP=447;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.64;ReadPosRankSum=-1.037;SOR=0.734 GT:AD:DP:GQ:PL 0/1:203,230:433:99:5501,0,5140 19 55672784 rs7260320 A G 1012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=7.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=0.687;SOR=1.509 GT:AD:DP:GQ:PL 0/1:49,41:90:99:1041,0,1410 19 55693244 rs2288419 T C 3675.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.692;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=-0.628;SOR=0.563 GT:AD:DP:GQ:PL 0/1:125,149:274:99:3704,0,2952 19 55697236 rs61735060 G A 2881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.486;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=1.269;SOR=0.732 GT:AD:DP:GQ:PL 0/1:104,121:225:99:2910,0,2742 19 55699454 rs890870 T C 3110.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3139,330,0 19 55702910 rs2288523 C A 1486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.158;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.937;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.057;SOR=0.49 GT:AD:DP:GQ:PL 0/1:77,68:145:99:1515,0,2132 19 55708557 rs2288521 A G 8156.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8185,765,0 19 55708573 rs2288520 G A 2951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.306;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=3.407;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-1.646;SOR=0.522 GT:AD:DP:GQ:PL 0/1:140,120:260:99:2980,0,3480 19 55713411 rs144253410 G A 2811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.71;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=6.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.511;SOR=1.108 GT:AD:DP:GQ:PL 0/1:126,112:238:99:2840,0,3244 19 55713535 rs2288515 G A 11477.8 PASS AC=2;AF=1;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=29.74;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,386:386:99:11506,1157,0 19 55715309 rs45535035 C T 3265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=8.367;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=0.023;SOR=0.375 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,135:236:99:0|1:55715309_C_T:3294,0,2480 19 55715319 rs9304763 C G 8918.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.61;SOR=0.996 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,231:231:99:1|1:55715309_C_T:8947,705,0 19 55738634 rs4644955 T C 8683.77 PASS AC=2;AF=1;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.47;SOR=0.916 GT:AD:DP:GQ:PL 1/1:0,285:285:99:8712,853,0 19 55738746 rs4374298 G A 3628.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.255;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.3;ReadPosRankSum=-1.779;SOR=0.623 GT:AD:DP:GQ:PL 0/1:138,157:295:99:3657,0,3932 19 55739605 rs4606850 C T 3481.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.613;ClippingRankSum=0;DB;DP=308;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-2.31;SOR=0.56 GT:AD:DP:GQ:PL 0/1:159,149:308:99:3510,0,3744 19 55739689 rs10413828 G A 3886.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.305;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=-0.422;SOR=0.738 GT:AD:DP:GQ:PL 0/1:145,153:298:99:3915,0,3546 19 55739813 rs10419308 G A 2378.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.17;ReadPosRankSum=0.983;SOR=0.796 GT:AD:DP:GQ:PL 0/1:125,109:234:99:2407,0,3028 19 55741961 rs28678477 G C 3602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.334;SOR=0.725 GT:AD:DP:GQ:PL 0/1:169,149:318:99:3631,0,4028 19 55756980 rs3745920 A G 2393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.299;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=1.476;SOR=0.535 GT:AD:DP:GQ:PL 0/1:103,102:205:99:2422,0,2892 19 55798565 rs11878562 C T 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=-1.074;QD=12.86;ReadPosRankSum=2.138;SOR=0.594 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1327,0,1093 19 55816678 rs1172821 C T 4528.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.67;SOR=1.677 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4557,429,0 19 55823389 rs55796422 C G 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=5.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=-1.967;SOR=0.303 GT:AD:DP:GQ:PL 0/1:58,80:139:99:2073,0,1394 19 55824332 rs7246479 T G 7472.77 PASS AC=2;AF=1;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7501,765,0 19 55865350 rs12461665 G A 3130.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3159,305,0 19 55869879 rs67168196 GGCTCCTTCATCTCGCCCCATGGCT G 7051.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.897;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.38;MQRankSum=0.345;QD=30.93;ReadPosRankSum=1.377;SOR=1.018 GT:AD:DP:GQ:PL 1/1:4,224:228:99:7089,586,0 19 55870104 rs12974819 G C 8692.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8721,819,0 19 55870260 rs73054941 G A 3271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-2.263;SOR=0.668 GT:AD:DP:GQ:PL 0/1:145,129:274:99:3300,0,3736 19 55870289 rs12974907 C T 7910.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=0.771 GT:AD:DP:GQ:PL 1/1:0,266:266:99:7939,795,0 19 55870351 rs12976922 T C 7817.77 PASS AC=2;AF=1;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.3;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,242:242:99:7846,726,0 19 55870600 rs12460416 C G 9384.77 PASS AC=2;AF=1;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.6;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9413,891,0 19 55871019 rs12609732 A G 8454.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.15;SOR=0.882 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8483,789,0 19 55872397 rs2124918 A G 5560.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,184:184:99:5589,549,0 19 55872531 rs11084397 C G 5338.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5367,557,0 19 55872566 rs2124919 A G 5217.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.15;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5246,535,0 19 55873642 rs4252574 C T 9038.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,291:291:99:9067,873,0 19 55879872 rs1126757 C T 1890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=1.888;SOR=0.734 GT:AD:DP:GQ:PL 0/1:82,84:166:99:1919,0,1937 19 55895588 rs1870074 G A 5296.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.343 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5325,500,0 19 55913038 rs7608 C T 8758.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.241;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=2.808;MLEAC=2;MLEAF=1;MQ=57.05;MQRankSum=6.052;QD=27.89;ReadPosRankSum=-1.877;SOR=1.225 GT:AD:DP:GQ:PL 1/1:10,304:314:99:8787,492,0 19 55914374 rs11672075 C T 2850.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2879,302,0 19 55966346 rs2277959 C T 950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=11.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.31;ReadPosRankSum=1.737;SOR=1.582 GT:AD:DP:GQ:PL 0/1:76,54:130:99:979,0,1875 19 55993260 rs34864744 A G 8216.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=2.056 GT:AD:DP:GQ:PL 1/1:0,258:258:99:8245,772,0 19 55993790 rs7254184 A G 7357.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=1.26 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7386,693,0 19 55993876 rs10423355 T C 4743.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4772,483,0 19 55994240 rs12981044 C T 4823.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.315;ClippingRankSum=0;DB;DP=464;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=0.169;SOR=0.851 GT:AD:DP:GQ:PL 0/1:254,209:463:99:4852,0,6965 19 55995272 rs11550705 G A 4446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.676;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.12;ReadPosRankSum=-0.37;SOR=0.816 GT:AD:DP:GQ:PL 0/1:148,167:315:99:4475,0,3740 19 55998262 rs77664073 C T 6329.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.866 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6358,628,0 19 55999993 rs4405662 A G 4561.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4590,482,0 19 56000896 rs62130160 G T 4472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=-0.307;SOR=0.805 GT:AD:DP:GQ:PL 0/1:143,181:324:99:4501,0,3664 19 56011460 rs4801713 C T 3394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=1.988;SOR=0.654 GT:AD:DP:GQ:PL 0/1:141,130:271:99:3423,0,3747 19 56024519 rs671542 T C 6729.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6758,651,0 19 56029465 rs4801331 G A 9373.77 PASS AC=2;AF=1;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.72;QD=27.73;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,338:338:99:9402,1001,0 19 56029616 rs150781976 C CCCA 4116.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.52;ReadPosRankSum=0.93;SOR=0.757 GT:AD:DP:GQ:PL 0/1:126,109:235:99:4154,0,5089 19 56030009 rs925878 C T 2591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=0.534;SOR=0.621 GT:AD:DP:GQ:PL 0/1:69,99:168:99:2620,0,1732 19 56041255 rs620251 C G 10355.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,341:341:99:10384,1023,0 19 56047448 rs310453 A G 2428.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.009;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=5.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=1.839;SOR=0.954 GT:AD:DP:GQ:PL 0/1:127,106:233:99:2457,0,2827 19 56052282 rs73067164 C T 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.957;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.5;MQ=60.24;MQRankSum=2.034;QD=13.33;ReadPosRankSum=-0.751;SOR=0.591 GT:AD:DP:GQ:PL 0/1:90,89:179:99:2415,0,2296 19 56052337 rs55643341 A AC 6872.73 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.53;QD=33.86;SOR=1.207 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6910,626,0 19 56052770 rs654439 C T 2790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.964;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-1.927;SOR=0.713 GT:AD:DP:GQ:PL 0/1:99,112:211:99:2819,0,2305 19 56056184 rs491639 A G 2429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.943;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=4.086;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-1.95;SOR=0.516 GT:AD:DP:GQ:PL 0/1:95,97:192:99:2458,0,2258 19 56089353 rs2292812 C T 3237.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=0.703;SOR=0.719 GT:AD:DP:GQ:PL 0/1:146,135:281:99:3266,0,3750 19 56089908 rs113850871 C CCCG 6353.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.186;ClippingRankSum=0;DB;DP=357;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=2.123;QD=18.1;ReadPosRankSum=-2.127;SOR=0.816 GT:AD:DP:GQ:PL 0/1:185,166:351:99:6391,0,7189 19 56089947 rs10403008 C G 4072.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.882;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=0.37;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.891;QD=10.61;ReadPosRankSum=1.7;SOR=0.654 GT:AD:DP:GQ:PL 0/1:208,176:384:99:4101,0,5623 19 56090076 rs34164618 G T 4390.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0;DB;DP=419;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.48;ReadPosRankSum=-1.599;SOR=0.622 GT:AD:DP:GQ:PL 0/1:231,188:419:99:4419,0,5873 19 56104136 rs7247236 T C 4867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.456;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=0.471;SOR=0.717 GT:AD:DP:GQ:PL 0/1:238,196:434:99:4896,0,5669 19 56114045 rs1077806 C T 5346.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0;DB;DP=484;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=1.124;SOR=0.818 GT:AD:DP:GQ:PL 0/1:245,239:484:99:5375,0,5794 19 56114237 rs310459 G A 3163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0;DB;DP=363;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.96;ReadPosRankSum=-0.632;SOR=0.692 GT:AD:DP:GQ:PL 0/1:199,154:353:99:3192,0,4801 19 56153868 rs310475 G A 6091.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6120,579,0 19 56160399 rs7246799 T C 3000.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.94;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3029,290,0 19 56162776 rs2287791 C T 5884.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.29;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,208:208:99:5913,622,0 19 56162881 rs519856 C T 2778.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=1.414 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2807,275,0 19 56180968 rs617073 C T 10531.8 PASS AC=2;AF=1;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,346:346:99:10560,1035,0 19 56241265 rs193384 A G 3315.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.946 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3344,339,0 19 56249445 rs755804 A G 790.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.512;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.15;ReadPosRankSum=-0.937;SOR=0.593 GT:AD:DP:GQ:PL 0/1:60,37:97:99:819,0,1463 19 56273293 rs2019946 G A 494.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.789;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=17.603;MLEAC=1;MLEAF=0.5;MQ=39.64;MQRankSum=1.123;QD=10.1;ReadPosRankSum=1.836;SOR=1.135 GT:AD:DP:GQ:PL 0/1:32,17:49:99:523,0,1173 19 56274086 rs138079370 G A 1100.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.204;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=6.029;MLEAC=1;MLEAF=0.5;MQ=32.68;MQRankSum=-0.355;QD=9.02;ReadPosRankSum=2.55;SOR=1.234 GT:AD:DP:GQ:PL 0/1:70,52:122:99:1129,0,1718 19 56274193 rs149361735 G C 1028.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.64;QD=30.26;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1057,102,0 19 56274460 rs200071964 A G 1649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.673;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.5;MQ=47.14;MQRankSum=-1.867;QD=5.81;ReadPosRankSum=1.57;SOR=0.532 GT:AD:DP:GQ:PL 0/1:191,93:284:99:1678,0,4876 19 56274506 rs147984855 G A 93.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.602;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=7.923;MLEAC=1;MLEAF=0.5;MQ=49.23;MQRankSum=-6.914;QD=0.51;ReadPosRankSum=-2.852;SOR=1.585 GT:AD:DP:GQ:PL 0/1:162,22:184:99:122,0,4431 19 56283297 rs199759246 G A 119.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.159;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=12.385;MLEAC=1;MLEAF=0.5;MQ=39.84;MQRankSum=0.585;QD=1.74;ReadPosRankSum=0.377;SOR=3.1 GT:AD:DP:GQ:PL 0/1:59,10:69:99:148,0,2157 19 56283978 rs116977548 C G 982.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.96;QD=31.7;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1011,93,0 19 56284090 rs202217602 G A 3590.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=4.939;MLEAC=1;MLEAF=0.5;MQ=43.05;MQRankSum=2.031;QD=14.96;ReadPosRankSum=-0.52;SOR=1.052 GT:AD:DP:GQ:PL 0/1:95,145:240:99:3619,0,2202 19 56284396 rs141642534 A T 1919.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=29.4;QD=30.96;SOR=2.157 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1948,186,0 19 56297249 rs59238812 C G 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.577;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=1.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.604;SOR=0.569 GT:AD:DP:GQ:PL 0/1:66,61:127:99:1475,0,1624 19 56307583 rs2616940 A G 3377.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3406,343,0 19 56321414 rs299163 C A 3884.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3913,402,0 19 56369593 rs421810 T C 5062.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5091,516,0 19 56410222 rs302827 C T 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.529;SOR=0.936 GT:AD:DP:GQ:PL 0/1:76,65:141:99:1475,0,1810 19 56413583 rs302835 A G 3448.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=1.287 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3477,324,0 19 56423074 rs977070 C G 1932.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=1.341 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1961,195,0 19 56423254 rs304002 G A 3278.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.51;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3307,344,0 19 56423668 rs304001 G A 4510.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.69;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4539,440,0 19 56423692 rs304000 C T 5056.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.753 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5085,507,0 19 56423728 rs303999 A G 4869.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4898,468,0 19 56423893 rs303998 G A 4307.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4336,429,0 19 56424443 rs303997 T C 5613.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5642,585,0 19 56459342 rs306507 C T 1973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.362;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-0.837;SOR=0.729 GT:AD:DP:GQ:PL 0/1:97,81:178:99:2002,0,2387 19 56459614 rs306506 G C 1687.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.209;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=-0.458;SOR=0.742 GT:AD:DP:GQ:PL 0/1:54,67:121:99:1716,0,1341 19 56477687 rs306497 A G 1828.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.236;SOR=0.97 GT:AD:DP:GQ:PL 0/1:73,79:152:99:1857,0,1706 19 56477710 rs306496 T C 1985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.371;SOR=0.772 GT:AD:DP:GQ:PL 0/1:76,88:164:99:2014,0,1692 19 56487603 rs306481 A G 2566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.34;ReadPosRankSum=0.723;SOR=0.687 GT:AD:DP:GQ:PL 0/1:73,106:179:99:2595,0,1705 19 56490778 rs306475 C T 2217.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.354;SOR=0.66 GT:AD:DP:GQ:PL 0/1:94,103:197:99:2246,0,2233 19 56499279 rs306457 G C 1372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.801;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=1.148;SOR=0.79 GT:AD:DP:GQ:PL 0/1:84,63:147:99:1401,0,1854 19 56511082 rs35427984 C G 549.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.04;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.59;ReadPosRankSum=3.241;SOR=0.442 GT:AD:DP:GQ:PL 0/1:37,27:64:99:578,0,940 19 56520150 rs12460592 C G 1047.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=-0.431;SOR=0.43 GT:AD:DP:GQ:PL 0/1:39,45:86:99:1076,0,1059 19 56549532 rs306447 A G 1418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.669;SOR=0.73 GT:AD:DP:GQ:PL 0/1:55,58:113:99:1447,0,1470 19 56565127 rs392801 G A 2173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.626;SOR=0.516 GT:AD:DP:GQ:PL 0/1:92,97:189:99:2202,0,2236 19 56565164 rs3103057 G A 4907.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4936,498,0 19 56599405 rs4077285 C G 4284.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.82;SOR=1.802 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4313,440,0 19 56599437 rs5828672 CTCG C 8970.73 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.63;SOR=1.101 GT:AD:DP:GQ:PL 1/1:0,201:201:99:9008,606,0 19 56693620 rs3745833 C G 2785.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.02;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2814,288,0 19 56703248 rs527025 G A 3281.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=-1.78;SOR=0.862 GT:AD:DP:GQ:PL 0/1:132,137:269:99:3310,0,3191 19 56704101 rs11084427 G A 3386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.5;MQ=52.17;MQRankSum=0.86;QD=13.18;ReadPosRankSum=2.664;SOR=0.759 GT:AD:DP:GQ:PL 0/1:120,137:257:99:3415,0,2938 19 56935527 rs3810340 A G 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0;QD=14.51;ReadPosRankSum=3.046;SOR=0.733 GT:AD:DP:GQ:PL 0/1:61,89:150:99:2204,0,1386 19 56953585 rs3760849 T C 1527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.69;ReadPosRankSum=1.146;SOR=0.435 GT:AD:DP:GQ:PL 0/1:44,60:104:99:1556,0,1066 19 56953863 rs8107758 T C 40.74 PASS AC=2;AF=1;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=20.37;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,2:2:6:68,6,0 19 57036012 rs11667052 G T 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=4.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.66;ReadPosRankSum=-1.083;SOR=0.46 GT:AD:DP:GQ:PL 0/1:57,35:92:99:917,0,1611 19 57036653 rs3752176 G A 2396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.362;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=4.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.89;ReadPosRankSum=-0.485;SOR=0.991 GT:AD:DP:GQ:PL 0/1:95,91:186:99:2425,0,2357 19 57037103 rs16987303 C G 1844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.287;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.162;SOR=0.735 GT:AD:DP:GQ:PL 0/1:100,69:169:99:1873,0,2847 19 57066013 rs10409531 C T 2545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=5.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=0.08;SOR=1.024 GT:AD:DP:GQ:PL 0/1:128,105:233:99:2574,0,3319 19 57085769 rs10421285 G C 4878.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=1.186 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4907,468,0 19 57089050 rs4801177 C T 3153.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3182,306,0 19 57089375 rs4570977 A G 2922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.653;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.03;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.667;SOR=0.796 GT:AD:DP:GQ:PL 0/1:109,115:224:99:2951,0,2580 19 57132968 rs2072501 G A 8769.77 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.73;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,295:295:99:8798,884,0 19 57133876 rs139192184 G A 4396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.695;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=1.388;SOR=0.716 GT:AD:DP:GQ:PL 0/1:246,192:438:99:4425,0,6217 19 57175578 rs12610410 C T 5646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0;DB;DP=444;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=1.519;SOR=0.766 GT:AD:DP:GQ:PL 0/1:208,233:441:99:5675,0,5147 19 57286624 rs113812503 G A 3387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.741;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=3.81;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.33;ReadPosRankSum=0.342;SOR=0.515 GT:AD:DP:GQ:PL 0/1:163,136:299:99:3416,0,4181 19 57293394 rs2286751 A G 9850.77 PASS AC=2;AF=1;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,326:326:99:9879,978,0 19 57326970 rs35851866 T C 1316.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.87;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-0.206;SOR=0.832 GT:AD:DP:GQ:PL 0/1:78,59:137:99:1345,0,1820 19 57327503 rs33931963 A G 1384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-1.642;SOR=0.519 GT:AD:DP:GQ:PL 0/1:53,56:109:99:1413,0,1420 19 57641146 rs1027392 A G 5094.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.64;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5123,482,0 19 57642098 rs3764574 G A 6657.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6686,659,0 19 57642782 rs9973206 C A 5602.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5631,528,0 19 57646570 rs4801433 T C 5222.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5251,521,0 19 57647015 rs7251328 A G 5467.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.08;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5496,564,0 19 57647236 rs7252632 T C 5836.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.015;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.78;ReadPosRankSum=0.955;SOR=0.756 GT:AD:DP:GQ:PL 1/1:2,194:196:99:5865,538,0 19 57648277 rs4801200 A T 4200.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.38;SOR=0.748 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4229,444,0 19 57649900 rs2370134 C T 2478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.97;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=0.598;SOR=0.747 GT:AD:DP:GQ:PL 0/1:89,110:199:99:2507,0,1997 19 57723007 rs2074858 G C 2723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=5.844;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.46;ReadPosRankSum=1.048;SOR=0.756 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,71:156:99:0|1:57723007_G_C:2752,0,4884 19 57723013 rs917340 G A 2739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=4.739;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.02;ReadPosRankSum=0.338;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 0/1:79,73:152:99:0|1:57723007_G_C:2768,0,4837 19 57742472 rs11084490 G C 3061.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=30.62;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3090,300,0 19 57742489 rs58264281 C T 5339.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=46.43;SOR=1.377 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,115:115:99:1|1:57742489_C_T:5368,361,0 19 57742493 rs142269286 AGGACGAGCAGGATT A 5333.73 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=45.2;SOR=1.382 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,118:118:99:1|1:57742489_C_T:5371,363,0 19 57759960 rs3746233 T C 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.265;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=11.936;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.441;SOR=1.633 GT:AD:DP:GQ:PL 0/1:71,58:129:99:1609,0,1731 19 57760018 rs2014572 G A 2452.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.261;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.869;SOR=0.983 GT:AD:DP:GQ:PL 0/1:129,101:230:99:2481,0,3018 19 57760057 rs3746231 G A 2394.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.482;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.326;SOR=0.639 GT:AD:DP:GQ:PL 0/1:119,105:224:99:2423,0,2773 19 57764770 rs10421632 G A 2424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=4.321;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.564;SOR=0.611 GT:AD:DP:GQ:PL 0/1:85,94:179:99:2453,0,2223 19 57765432 rs8100154 A G 5182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.458;ClippingRankSum=0;DB;DP=394;ExcessHet=3.0103;FS=2.62;MLEAC=1;MLEAF=0.5;MQ=59.85;MQRankSum=-2.234;QD=13.15;ReadPosRankSum=-0.338;SOR=0.579 GT:AD:DP:GQ:PL 0/1:196,198:394:99:5211,0,4786 19 57832257 rs4801462 T C 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.131;SOR=0.597 GT:AD:DP:GQ:PL 0/1:91,84:175:99:1983,0,2237 19 57838018 rs6510057 C G 3769.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3798,380,0 19 57839150 rs8100491 A G 5425.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5454,522,0 19 57839567 rs1968090 T A 8274.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;QD=30.88;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8303,803,0 19 57840547 rs10410649 A G 1924.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.296;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=6.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.06;SOR=0.366 GT:AD:DP:GQ:PL 0/1:87,79:166:99:1953,0,2076 19 57865082 rs862703 T C 1864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=1.626;SOR=0.701 GT:AD:DP:GQ:PL 0/1:61,76:137:99:1893,0,1394 19 57868336 rs862709 A G 6042.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.97;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6071,566,0 19 57909872 rs4801478 G A 5961.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5990,590,0 19 57931303 rs2014827 C A 3221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.92;ReadPosRankSum=1.139;SOR=0.645 GT:AD:DP:GQ:PL 0/1:90,126:216:99:3250,0,2303 19 57931553 rs10417533 C T 2951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.498;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=1.221;SOR=0.593 GT:AD:DP:GQ:PL 0/1:112,118:230:99:2980,0,2654 19 57932027 rs2158009 C T 2925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.842;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=5.601;MLEAC=1;MLEAF=0.5;MQ=59.89;MQRankSum=-0.937;QD=13.55;ReadPosRankSum=-0.398;SOR=0.909 GT:AD:DP:GQ:PL 0/1:102,114:216:99:2954,0,2403 19 57955244 rs12986235 A G 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.497;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=9.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-1.092;SOR=1.03 GT:AD:DP:GQ:PL 0/1:94,64:158:99:1674,0,2498 19 57956828 rs7246856 T G 2156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.685;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-1.874;SOR=0.623 GT:AD:DP:GQ:PL 0/1:96,86:182:99:2185,0,2174 19 57985460 rs2074059 T A 1994.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.416;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.77;SOR=0.611 GT:AD:DP:GQ:PL 0/1:108,85:193:99:2023,0,2596 19 57985566 rs2074060 G C 2042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.814;SOR=0.666 GT:AD:DP:GQ:PL 0/1:100,81:181:99:2071,0,2668 19 58002819 rs6510085 T A 1806.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.168;MLEAC=1;MLEAF=0.5;MQ=57.82;MQRankSum=-4.135;QD=12.38;ReadPosRankSum=0.797;SOR=0.521 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1835,0,1860 19 58002964 rs8108040 G C 3229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.5;MQ=55.65;MQRankSum=-1.511;QD=11.45;ReadPosRankSum=2.973;SOR=0.808 GT:AD:DP:GQ:PL 0/1:139,143:282:99:3258,0,3294 19 58003580 rs2074071 A G 2051.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.412;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.5;MQ=58.4;MQRankSum=-4.039;QD=11.66;ReadPosRankSum=-0.138;SOR=1.056 GT:AD:DP:GQ:PL 0/1:93,83:176:99:2080,0,2215 19 58004346 rs2074076 G C 3509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.001;SOR=0.535 GT:AD:DP:GQ:PL 0/1:153,141:294:99:3538,0,4014 19 58004931 rs2074077 A G 3839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=7.632;ClippingRankSum=0;DB;DP=303;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.5;MQ=54.61;MQRankSum=-10.485;QD=12.67;ReadPosRankSum=-1.156;SOR=0.905 GT:AD:DP:GQ:PL 0/1:165,138:303:99:3868,0,3867 19 58017753 rs61731281 C A 4303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=1.562;QD=17.42;ReadPosRankSum=0.317;SOR=0.837 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,112:247:99:0|1:58017753_C_A:4332,0,5383 19 58017754 rs61737910 A G 4303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.4;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=1.543;QD=17.49;ReadPosRankSum=-0.013;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL 0/1:133,113:246:99:0|1:58017753_C_A:4332,0,5383 19 58017758 rs55823456 G C 4372.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.163;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=1.535;QD=17.56;ReadPosRankSum=-0.281;SOR=0.862 GT:AD:DP:GQ:PGT:PID:PL 0/1:134,115:249:99:0|1:58017753_C_A:4401,0,5312 19 58018618 rs2074064 A G 4404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.655;ClippingRankSum=0;DB;DP=359;ExcessHet=3.0103;FS=5.354;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.424;QD=12.27;ReadPosRankSum=-1.566;SOR=0.533 GT:AD:DP:GQ:PL 0/1:181,178:359:99:4433,0,4260 19 58038964 rs12461014 T A 6575.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,235:235:99:6604,702,0 19 58058536 rs1548476 A G 2748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.835;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.446;SOR=0.682 GT:AD:DP:GQ:PL 0/1:112,109:221:99:2777,0,2726 19 58058739 rs10410631 T C 3185.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.227;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.85;ReadPosRankSum=1.455;SOR=0.813 GT:AD:DP:GQ:PL 0/1:84,117:201:99:3214,0,1990 19 58090087 rs369565795 A C 2225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.008;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=0.596;SOR=0.588 GT:AD:DP:GQ:PL 0/1:92,93:185:99:2254,0,2199 19 58117083 rs9677004 A G 2253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.627;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=2.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=-1.098;SOR=0.923 GT:AD:DP:GQ:PL 0/1:88,92:180:99:2282,0,2152 19 58117223 rs2360543 T A 6547.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6576,615,0 19 58131576 rs10414451 T C 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.829;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.61;ReadPosRankSum=-0.515;SOR=0.68 GT:AD:DP:GQ:PL 0/1:73,94:167:99:2635,0,1884 19 58132106 rs34034473 A C 3363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=-1.367;SOR=0.624 GT:AD:DP:GQ:PL 0/1:138,139:277:99:3392,0,3467 19 58144715 rs9749449 A G 1694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.598;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=1.141;QD=10.21;ReadPosRankSum=0.963;SOR=0.619 GT:AD:DP:GQ:PL 0/1:93,73:166:99:1723,0,2232 19 58151286 rs4801508 T C 3299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.806;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.64;ReadPosRankSum=0.329;SOR=0.951 GT:AD:DP:GQ:PGT:PID:PL 0/1:83,85:168:99:0|1:58151286_T_C:3328,0,3195 19 58151294 rs4801509 T A 3298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.65;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.07;ReadPosRankSum=0.548;SOR=1.044 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,86:173:99:0|1:58151286_T_C:3327,0,3305 19 58151338 rs34418076 TG T 3245.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.48;ReadPosRankSum=-0.673;SOR=0.741 GT:AD:DP:GQ:PL 0/1:94,103:197:99:3283,0,3157 19 58152361 rs3746219 T A 3334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=2.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=0.681;SOR=0.547 GT:AD:DP:GQ:PL 0/1:101,123:224:99:3363,0,2711 19 58152795 rs11879465 C T 4001.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.87;ReadPosRankSum=0.1;SOR=0.819 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,106:224:99:0|1:58152795_C_T:4030,0,6288 19 58152817 rs11880050 G C 4376.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.16;ReadPosRankSum=-0.084;SOR=0.741 GT:AD:DP:GQ:PGT:PID:PL 0/1:118,123:241:99:0|1:58152795_C_T:4405,0,6238 19 58153000 rs3746218 T C 5664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.641;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.32;ReadPosRankSum=1.55;SOR=0.585 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,147:327:99:0|1:58153000_T_C:5693,0,9190 19 58153009 rs3746217 C T 5592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.66;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.21;ReadPosRankSum=0.637;SOR=0.598 GT:AD:DP:GQ:PGT:PID:PL 0/1:174,151:325:99:0|1:58153000_T_C:5621,0,8998 19 58189287 rs9676604 C T 1369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.901;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.669;SOR=0.938 GT:AD:DP:GQ:PL 0/1:72,56:128:99:1398,0,1808 19 58213693 rs61730373 C T 2131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.14;ReadPosRankSum=-0.163;SOR=0.593 GT:AD:DP:GQ:PL 0/1:168,94:262:99:2160,0,4466 19 58213773 rs2188736 G C 2103.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=0.942;SOR=0.713 GT:AD:DP:GQ:PL 0/1:142,90:232:99:2132,0,3804 19 58233008 rs3746207 G A 1844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.87;ReadPosRankSum=1.07;SOR=0.936 GT:AD:DP:GQ:PL 0/1:123,85:208:99:1873,0,3264 19 58258466 rs60751243 G T 1999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.351;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=3.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.848;SOR=0.825 GT:AD:DP:GQ:PL 0/1:97,94:191:99:2028,0,2414 19 58281192 rs74911211 T TC 956.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.534;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=0.752;SOR=1.014 GT:AD:DP:GQ:PL 0/1:57,45:102:99:994,0,1352 19 58352289 rs2562052 G A 3289.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.51;QD=33.92;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3318,292,0 19 58352522 rs12981244 G A 13207.8 PASS AC=2;AF=1;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=51.84;QD=29.29;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,451:451:99:13236,1352,0 19 58352806 rs35313547 T C 3613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.566;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0.98;QD=12.55;ReadPosRankSum=-0.512;SOR=0.758 GT:AD:DP:GQ:PL 0/1:148,140:288:99:3642,0,3789 19 58353003 rs34871842 G A 2600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.074;SOR=0.718 GT:AD:DP:GQ:PL 0/1:115,104:219:99:2629,0,3055 19 58370657 rs200055283 C A 139.77 SNP_QD_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=58.349;MLEAC=1;MLEAF=0.5;MQ=49.3;MQRankSum=-6.581;QD=0.61;ReadPosRankSum=-3.066;SOR=5.136 GT:AD:DP:GQ:PL 0/1:203,26:229:99:168,0,5591 19 58370727 rs77825740 T G 1662.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=16.03;MLEAC=1;MLEAF=0.5;MQ=53.75;MQRankSum=-15.047;QD=6.42;ReadPosRankSum=1.949;SOR=1.217 GT:AD:DP:GQ:PL 0/1:172,87:259:99:1691,0,4558 19 58385869 rs55789144 C CATA 11717.7 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.79;QD=47.25;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,248:248:99:1|1:58385869_C_CATA:11755,798,0 19 58385954 rs10412929 T C 5115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.278;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=3.363;MLEAC=1;MLEAF=0.5;MQ=56.44;MQRankSum=-0.319;QD=14.13;ReadPosRankSum=0.685;SOR=0.584 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,196:362:99:0|1:58385869_C_CATA:5144,0,3968 19 58420152 rs17845779 C A 5433.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.578;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.43;MQRankSum=-6.809;QD=15.8;ReadPosRankSum=-0.527;SOR=0.687 GT:AD:DP:GQ:PGT:PID:PL 0/1:198,146:344:99:0|1:58420152_C_A:5462,0,11824 19 58420162 rs10416584 T C 5633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.623;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.5;MQ=56.21;MQRankSum=-6.967;QD=16.57;ReadPosRankSum=-0.908;SOR=0.666 GT:AD:DP:GQ:PGT:PID:PL 0/1:194,146:340:99:0|1:58420152_C_A:5662,0,11910 19 58420167 rs17852300 T C 5262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.169;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.5;MQ=56.68;MQRankSum=-6.746;QD=16;ReadPosRankSum=-0.334;SOR=0.653 GT:AD:DP:GQ:PGT:PID:PL 0/1:190,139:329:99:0|1:58420152_C_A:5291,0,11556 19 58420455 rs149038745 T G 1148.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=10.718;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=4.3;MLEAC=1;MLEAF=0.5;MQ=52.78;MQRankSum=-11.885;QD=4.13;ReadPosRankSum=0.032;SOR=0.868 GT:AD:DP:GQ:PL 0/1:222,56:278:99:1177,0,5600 19 58420699 rs3745133 C A 3659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0;DB;DP=393;ExcessHet=3.0103;FS=12.899;MLEAC=1;MLEAF=0.5;MQ=53.5;MQRankSum=-9.963;QD=9.34;ReadPosRankSum=1.829;SOR=0.805 GT:AD:DP:GQ:PL 0/1:230,162:392:99:3688,0,6343 19 58421128 rs201944488 C T 3470.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.73;QD=27.99;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3499,371,0 19 58439306 rs7253514 G A 3403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0;DB;DP=292;ExcessHet=3.0103;FS=3.17;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.66;ReadPosRankSum=1.866;SOR=0.54 GT:AD:DP:GQ:PL 0/1:145,147:292:99:3432,0,3652 19 58453342 rs959231 T C 2336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.805;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=6.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-0.66;SOR=0.791 GT:AD:DP:GQ:PL 0/1:107,89:196:99:2365,0,2583 19 58455381 rs257652 C T 4993.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.74;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5022,534,0 19 58491627 rs11673029 T C 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.686;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.29;ReadPosRankSum=0.918;SOR=0.425 GT:AD:DP:GQ:PL 0/1:76,55:131:99:1507,0,1992 19 58549366 rs159870 C G 14734.8 PASS AC=2;AF=1;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.96;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,447:447:99:14763,1341,0 19 58549593 rs2241406 C G 7365.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.31;SOR=1.478 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7394,684,0 19 58570697 rs7256947 G T 1213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.76;ReadPosRankSum=4.204;SOR=0.606 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,45:77:99:0|1:58570697_G_T:1242,0,865 19 58572979 rs1469087 G A 5814.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5843,599,0 19 58578578 rs2229375 C T 3985.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.904;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-0.191;SOR=0.794 GT:AD:DP:GQ:PL 0/1:168,166:334:99:4014,0,4345 19 58598670 rs2287837 C T 2152.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.74;ReadPosRankSum=0.743;SOR=0.775 GT:AD:DP:GQ:PL 0/1:75,94:169:99:2181,0,1683 19 58598784 rs2260914 A G 1907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.51;ReadPosRankSum=-1.691;SOR=0.575 GT:AD:DP:GQ:PL 0/1:48,75:123:99:1936,0,1129 19 58600048 rs1529329 C T 1854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=1.9;SOR=0.716 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1883,0,1988 19 58718247 rs45601339 T C 3933.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.5;MQ=60.21;MQRankSum=1.088;QD=15.01;ReadPosRankSum=-0.457;SOR=0.778 GT:AD:DP:GQ:PL 0/1:115,147:262:99:3962,0,2799 19 58718360 rs59557917 A AG 11420.7 PASS AC=2;AF=1;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.18;QD=37.32;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,306:306:99:11458,930,0 19 58774071 rs260462 A G 2768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.81;ReadPosRankSum=0.746;SOR=0.673 GT:AD:DP:GQ:PL 0/1:81,106:187:99:2797,0,2048 19 58788618 rs5828755 G GC 4674.73 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=33.39;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4712,421,0 19 58790675 rs437229 T C 10112.8 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.7;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,319:319:99:10141,957,0 19 58790713 rs374431 G C 10423.8 PASS AC=2;AF=1;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.78;SOR=0.899 GT:AD:DP:GQ:PL 1/1:0,318:318:99:10452,955,0 19 58790807 rs260501 T G 9645.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9674,931,0 19 58797583 rs59553565 C CT 3946.73 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.19;QD=36.54;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3984,325,0 19 58806083 rs260471 T C 2620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.725;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=5.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.08;ReadPosRankSum=-1.78;SOR=0.985 GT:AD:DP:GQ:PL 0/1:151,109:260:99:2649,0,3776 19 58864479 rs893184 T C 6968.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6997,660,0 19 58868480 rs12609654 G T 3655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.809;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=4.196;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=0.578;SOR=0.865 GT:AD:DP:GQ:PL 0/1:174,158:332:99:3684,0,4869 19 58879965 rs7255489 A G 13371.8 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.99;SOR=1.563 GT:AD:DP:GQ:PL 1/1:0,304:304:99:13400,924,0 19 58879976 rs7255596 C T 12689.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=41.2;ReadPosRankSum=-1.481;SOR=0.491 GT:AD:DP:GQ:PL 1/1:4,304:308:99:12718,746,0 19 58904715 rs2289143 C T 1631.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.902;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=4.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=0.263;SOR=1.092 GT:AD:DP:GQ:PL 0/1:96,68:164:99:1660,0,2437 19 58907443 rs12611212 C G 1784.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.14;ReadPosRankSum=1.648;SOR=0.859 GT:AD:DP:GQ:PL 0/1:79,68:147:99:1813,0,2140 19 58907529 . T TC 4848.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0;DP=293;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=0.966;QD=16.72;ReadPosRankSum=-1.202;SOR=0.728 GT:AD:DP:GQ:PL 0/1:139,151:290:99:4886,0,4323 19 58908150 rs13343526 C G 9357.77 PASS AC=2;AF=1;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=1.106 GT:AD:DP:GQ:PL 1/1:0,308:308:99:9386,923,0 19 58928302 rs10423138 T C 2334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.47;SOR=0.788 GT:AD:DP:GQ:PL 0/1:97,93:190:99:2363,0,2494 19 58928786 rs7257872 A G 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.569;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.474;SOR=0.841 GT:AD:DP:GQ:PL 0/1:99,74:173:99:1849,0,2623 19 58929052 rs3764535 G A 2116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=-1.346;SOR=0.871 GT:AD:DP:GQ:PL 0/1:125,90:215:99:2145,0,3229 19 58929136 rs3764534 G A 2147.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.209;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.32;SOR=0.739 GT:AD:DP:GQ:PL 0/1:111,85:196:99:2176,0,2920 19 58945962 rs9941466 C T 6910.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6939,645,0 19 58946056 rs1465789 G A 2351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=6.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.218;SOR=1.098 GT:AD:DP:GQ:PL 0/1:117,95:212:99:2380,0,3187 19 58951123 rs7259841 T C 2040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.125;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=5.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=1.539;SOR=0.973 GT:AD:DP:GQ:PL 0/1:83,82:165:99:2069,0,1881 19 58966644 rs60037165 A T 3959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0;DB;DP=334;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=59.57;MQRankSum=-4.145;QD=11.86;ReadPosRankSum=0.763;SOR=0.583 GT:AD:DP:GQ:PL 0/1:168,166:334:99:3988,0,4191 19 58982384 rs10418774 A G 8629.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.66;ReadPosRankSum=-0.41;SOR=0.459 GT:AD:DP:GQ:PL 1/1:3,309:312:99:8658,828,0 19 58989495 rs893185 A C 1914.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.29;ReadPosRankSum=0.799;SOR=0.686 GT:AD:DP:GQ:PL 0/1:57,77:134:99:1943,0,1323 19 58991900 rs882610 G A 4326.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.222;ClippingRankSum=0;DB;DP=369;ExcessHet=3.0103;FS=5.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=2.481;SOR=0.728 GT:AD:DP:GQ:PL 0/1:184,185:369:99:4355,0,4767 19 59010593 rs4801274 A G 3346.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3375,327,0 19 59025685 rs4801602 A C 5728.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=30.8;SOR=2.252 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5757,558,0 19 59063157 rs75672965 G A 3265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.762;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.91;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.46;SOR=0.758 GT:AD:DP:GQ:PL 0/1:143,135:278:99:3294,0,3885 19 59082605 rs3752109 C T 2973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.103;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.751;SOR=0.711 GT:AD:DP:GQ:PL 0/1:129,124:253:99:3002,0,3515 20 76962 rs6111385 T C 5584.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5613,554,0 20 126310 rs11467417 ACC A 8118.73 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=43.89;SOR=1.142 GT:AD:DP:GQ:PL 1/1:0,185:185:99:8156,557,0 20 138178 rs3216039 GC G 1831.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-1.281;SOR=0.575 GT:AD:DP:GQ:PL 0/1:88,62:150:99:1869,0,2817 20 168728 rs4813043 T A 3763.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.311 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3792,375,0 20 238435 rs66489228 CTGGTCT C 7472.73 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=44.48;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,168:168:99:7510,506,0 20 256727 rs3827147 T A 7103.77 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.99;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,245:245:99:7132,731,0 20 257733 rs2277781 A G 3843.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.72;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3872,342,0 20 257803 rs6075583 G C 2347.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=2.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.46;SOR=0.889 GT:AD:DP:GQ:PL 0/1:90,97:187:99:2376,0,2189 20 259818 rs6035541 G A 1246.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.425;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=3.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.7;ReadPosRankSum=3.608;SOR=1.144 GT:AD:DP:GQ:PGT:PID:PL 0/1:38,53:91:99:1|0:259674_CGGGACGGAGGGCGGGAGGGCGGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGCGGGACGGAGGGACGGAGGGAGGGAGGGAGGGACGGAGGTTGGGACGGA_C:1275,0,1161 20 259969 rs7271033 G C 4836.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.863 GT:AD:DP:GQ:PL 1/1:0,163:163:99:4865,489,0 20 271225 . T TTTTTTA 329.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.361;ClippingRankSum=0;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.69;ReadPosRankSum=1.154;SOR=0.664 GT:AD:DP:GQ:PL 0/1:47,11:83:99:367,0,1620 20 278515 rs2223665 T C 3984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.614;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=4.001;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.571;SOR=0.777 GT:AD:DP:GQ:PL 0/1:204,158:362:99:4013,0,5104 20 278687 rs5839847 CCGG C 11003.7 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=44.55;SOR=1.098 GT:AD:DP:GQ:PL 1/1:0,247:249:99:11041,744,0 20 278806 rs1057189 C T 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.518;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.015;QD=14.67;ReadPosRankSum=1.004;SOR=0.725 GT:AD:DP:GQ:PL 0/1:33,34:67:99:1011,0,1130 20 371972 rs6051637 T C 7637.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.06 GT:AD:DP:GQ:PL 1/1:0,252:252:99:7666,755,0 20 377226 rs6115830 C T 10988.8 PASS AC=2;AF=1;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,364:364:99:11017,1092,0 20 422348 rs6084439 T G 1009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.675;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-3.783;SOR=1.092 GT:AD:DP:GQ:PL 0/1:38,40:78:99:1038,0,878 20 590456 rs282164 A G 2793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.939;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=-0.678;SOR=0.842 GT:AD:DP:GQ:PL 0/1:165,124:289:99:2822,0,3928 20 590542 rs2754502 C G 14487.8 PASS AC=2;AF=1;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.85;SOR=1.144 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,323:323:99:1|1:590542_C_G:14516,975,0 20 590543 rs2665781 G C 14487.8 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.72;SOR=1.133 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,324:324:99:1|1:590542_C_G:14516,975,0 20 590900 rs183989 T C 1156.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=-1.664;SOR=0.579 GT:AD:DP:GQ:PL 0/1:70,53:123:99:1185,0,1809 20 744450 rs3746805 G A 9235.77 PASS AC=2;AF=1;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.78 GT:AD:DP:GQ:PL 1/1:0,309:309:99:9264,926,0 20 744662 rs3833341 A ACAGGTCAAT 2780.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.544;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.958;QD=19.72;ReadPosRankSum=0.248;SOR=0.954 GT:AD:DP:GQ:PL 0/1:68,73:141:99:2818,0,6972 20 746098 rs3746808 G A 3364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.15;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.931;SOR=0.787 GT:AD:DP:GQ:PL 0/1:126,138:264:99:3393,0,3128 20 825678 rs538094 T C 9712.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,297:297:99:9741,891,0 20 1099523 rs1803415 T G 7282.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.977 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7311,687,0 20 1285933 rs3795139 G A 3300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=1.4;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=1.032;SOR=0.599 GT:AD:DP:GQ:PL 0/1:160,132:292:99:3329,0,4255 20 1286662 rs62187495 G A 1934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=1.03;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.1;ReadPosRankSum=-0.221;SOR=0.781 GT:AD:DP:GQ:PL 0/1:150,89:239:99:1963,0,3850 20 1286711 rs4813082 T C 5364.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=1.123 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5393,543,0 20 1291076 rs1048628 G C 1203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=-0.176;SOR=0.753 GT:AD:DP:GQ:PL 0/1:66,55:121:99:1232,0,1608 20 1292964 rs4814110 T C 4463.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.35;SOR=1.445 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4492,414,0 20 1292989 rs4814111 C T 1592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.616;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=9.829;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=1.415;SOR=1.375 GT:AD:DP:GQ:PL 0/1:97,63:160:99:1621,0,2330 20 1293008 rs2273958 C T 1831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.321;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=12.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.562;SOR=1.391 GT:AD:DP:GQ:PL 0/1:99,70:169:99:1860,0,2631 20 1293046 rs1048621 G A 2720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.93;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.932;SOR=0.896 GT:AD:DP:GQ:PL 0/1:97,109:206:99:2749,0,2220 20 1293247 rs2273959 C T 2805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.399;SOR=0.892 GT:AD:DP:GQ:PL 0/1:106,108:214:99:2834,0,2877 20 1350672 rs6041749 T C 1083.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.549;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=-0.79;SOR=0.759 GT:AD:DP:GQ:PL 0/1:88,46:134:99:1112,0,2224 20 1350709 rs8392 T C 1893.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.6;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=3.577;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-1.376;SOR=0.969 GT:AD:DP:GQ:PL 0/1:101,74:175:99:1922,0,2555 20 1356261 rs6074549 G C 1495.77 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.201 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1524,152,0 20 1426393 rs9575 C T 2363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=0;QD=12.78;ReadPosRankSum=-1.299;SOR=0.621 GT:AD:DP:GQ:PL 0/1:80,105:185:99:2392,0,1828 20 1459060 rs6042507 T G 6107.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.84;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,186:186:99:6136,559,0 20 1532595 rs2249317 T C 2127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.187;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.482;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.52;ReadPosRankSum=2.019;SOR=0.954 GT:AD:DP:GQ:PL 0/1:80,90:170:99:2156,0,1833 20 1538249 rs2250055 C T 1478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=5.961;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=1.19;SOR=0.834 GT:AD:DP:GQ:PL 0/1:83,68:151:99:1507,0,2071 20 1546911 rs2243603 C G 1094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-2.215;SOR=0.621 GT:AD:DP:GQ:PL 0/1:39,47:86:99:1123,0,962 20 1551485 rs2254458 C T 1928.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.36;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-0.126;SOR=0.823 GT:AD:DP:GQ:PL 0/1:67,78:145:99:1957,0,1713 20 1551564 rs41297640 T C 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.23;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-0.116;SOR=0.73 GT:AD:DP:GQ:PL 0/1:108,81:189:99:1967,0,2680 20 1552430 rs2253427 T C 6323.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.982;ClippingRankSum=0;DB;DP=413;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.205;QD=15.31;ReadPosRankSum=-0.055;SOR=0.629 GT:AD:DP:GQ:PL 0/1:174,239:413:99:6352,0,4016 20 1592139 rs149722469 G T 77.77 SNP_QD_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.074;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=41.18;MLEAC=1;MLEAF=0.5;MQ=58.71;MQRankSum=-14.72;QD=0.36;ReadPosRankSum=-0.806;SOR=5.553 GT:AD:DP:GQ:PGT:PID:PL 0/1:202,16:218:99:0|1:1592139_G_T:106,0,8313 20 1592141 rs141518677 T C 77.77 SNP_QD_filter;SNP_MQRankSum_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.621;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=44.298;MLEAC=1;MLEAF=0.5;MQ=58.6;MQRankSum=-14.547;QD=0.37;ReadPosRankSum=-1.302;SOR=5.663 GT:AD:DP:GQ:PGT:PID:PL 0/1:196,17:213:99:0|1:1592139_G_T:106,0,8313 20 1592150 . TGA T 179.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.6;ClippingRankSum=0;DP=224;ExcessHet=3.0103;FS=32.098;MLEAC=1;MLEAF=0.5;MQ=58.52;MQRankSum=-14.879;QD=0.81;ReadPosRankSum=-1.886;SOR=3.716 GT:AD:DP:GQ:PGT:PID:PL 0/1:203,20:223:99:0|1:1592150_TGA_T:217,0,8641 20 1592154 . G GAC 274.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.009;ClippingRankSum=0;DP=226;ExcessHet=3.0103;FS=32.086;MLEAC=1;MLEAF=0.5;MQ=58.54;MQRankSum=-14.98;QD=1.22;ReadPosRankSum=-1.837;SOR=3.715 GT:AD:DP:GQ:PGT:PID:PL 0/1:206,20:226:99:0|1:1592150_TGA_T:312,0,8632 20 1592175 rs201724217 T G 759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.822;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=14.234;MLEAC=1;MLEAF=0.5;MQ=58.55;MQRankSum=-12.399;QD=2.99;ReadPosRankSum=-4.106;SOR=1.375 GT:AD:DP:GQ:PL 0/1:214,40:254:99:788,0,5559 20 1592193 rs371465078 C T 1101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=14.737;MLEAC=1;MLEAF=0.5;MQ=58.41;MQRankSum=-11.373;QD=4.21;ReadPosRankSum=-3.558;SOR=1.114 GT:AD:DP:GQ:PL 0/1:208,54:262:99:1130,0,5593 20 1592215 rs41289057 C G 1430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.62;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=9.726;MLEAC=1;MLEAF=0.5;MQ=58.46;MQRankSum=-10.518;QD=5.63;ReadPosRankSum=0.218;SOR=0.77 GT:AD:DP:GQ:PL 0/1:193,61:254:99:1459,0,5152 20 1592265 rs45471597 A G 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.57;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.5;MQ=57.12;MQRankSum=-10.438;QD=7.39;ReadPosRankSum=2.461;SOR=0.497 GT:AD:DP:GQ:PL 0/1:138,80:218:99:1640,0,3442 20 1592284 rs1135196 G A 1553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.722;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=3.461;MLEAC=1;MLEAF=0.5;MQ=56.94;MQRankSum=-9.621;QD=7.97;ReadPosRankSum=1.785;SOR=0.483 GT:AD:DP:GQ:PL 0/1:117,78:195:99:1582,0,3176 20 1592312 rs72484087 T C 1410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.241;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=4.389;MLEAC=1;MLEAF=0.5;MQ=56.7;MQRankSum=-7.601;QD=10.01;ReadPosRankSum=0.388;SOR=0.389 GT:AD:DP:GQ:PL 0/1:78,63:141:99:1439,0,2069 20 1592343 rs200963975 T C 1224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.435;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.74;MQRankSum=-7.906;QD=13.76;ReadPosRankSum=1.012;SOR=0.681 GT:AD:DP:GQ:PGT:PID:PL 0/1:54,35:89:99:0|1:1592343_T_C:1253,0,2106 20 1592349 . G A 1153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.4;MQRankSum=-8.182;QD=14.42;ReadPosRankSum=1.278;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,30:80:99:0|1:1592343_T_C:1182,0,2040 20 1592352 rs139138248 A C 1041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.5;MQ=55.15;MQRankSum=-8.151;QD=13.71;ReadPosRankSum=0.92;SOR=0.526 GT:AD:DP:GQ:PGT:PID:PL 0/1:47,29:76:99:0|1:1592343_T_C:1070,0,1970 20 1592355 rs145146965 T C 1044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.215;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.08;MQRankSum=-8.086;QD=13.93;ReadPosRankSum=0.55;SOR=0.548 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,29:75:99:0|1:1592343_T_C:1073,0,1919 20 1592358 rs145917713 C T 1008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=55.01;MQRankSum=-8.252;QD=13.63;ReadPosRankSum=0.519;SOR=0.67 GT:AD:DP:GQ:PGT:PID:PL 0/1:46,28:74:99:0|1:1592343_T_C:1037,0,1838 20 1600524 rs1535882 T C 1002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=-0.273;SOR=0.547 GT:AD:DP:GQ:PL 0/1:55,48:103:99:1031,0,1368 20 1610894 rs3746721 G A 1084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.586;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.6;ReadPosRankSum=-0.064;SOR=0.745 GT:AD:DP:GQ:PL 0/1:62,51:113:99:1113,0,1397 20 1610939 rs3746722 G A 2659.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.477 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2688,258,0 20 1615959 rs9305125 T C 4802.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=1.068 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4831,479,0 20 1616137 rs6034239 G A 2728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.596;SOR=0.7 GT:AD:DP:GQ:PL 0/1:102,117:219:99:2757,0,2434 20 1616206 rs6043409 A G 7133.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.88;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7162,740,0 20 1616816 rs71964196 GGT G 4715.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.251;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.774;QD=17.53;ReadPosRankSum=-1.137;SOR=0.66 GT:AD:DP:GQ:PL 0/1:143,126:269:99:4753,0,5524 20 1616892 rs2277760 A G 4491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.252;ClippingRankSum=0;DB;DP=385;ExcessHet=3.0103;FS=0.371;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=-1.687;QD=11.7;ReadPosRankSum=-0.997;SOR=0.657 GT:AD:DP:GQ:PL 0/1:207,177:384:99:4520,0,5085 20 1617069 rs2277761 A G 3905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.187;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.265;QD=14.15;ReadPosRankSum=1.63;SOR=0.535 GT:AD:DP:GQ:PL 0/1:123,153:276:99:3934,0,3025 20 1629906 rs6079967 C T 3831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=1.018;SOR=0.616 GT:AD:DP:GQ:PL 0/1:131,162:293:99:3860,0,2944 20 1895794 rs1135192 G A 336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=24.634;MLEAC=1;MLEAF=0.5;MQ=58.39;MQRankSum=-9.265;QD=3.27;ReadPosRankSum=1.224;SOR=1.789 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,15:103:99:0|1:1895794_G_A:365,0,4687 20 1895796 rs143735290 T C 327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.957;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=24.311;MLEAC=1;MLEAF=0.5;MQ=58.38;MQRankSum=-9.218;QD=3.21;ReadPosRankSum=-0.606;SOR=1.791 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,15:102:99:0|1:1895794_G_A:356,0,4761 20 1895797 rs146490405 G A 330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.376;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=24.028;MLEAC=1;MLEAF=0.5;MQ=58.41;MQRankSum=-9.312;QD=3.18;ReadPosRankSum=-0.555;SOR=1.792 GT:AD:DP:GQ:PGT:PID:PL 0/1:89,15:104:99:0|1:1895794_G_A:359,0,4740 20 1895813 rs17855609 A T 310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.927;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=26.978;MLEAC=1;MLEAF=0.5;MQ=58.66;MQRankSum=-9.753;QD=2.55;ReadPosRankSum=-2.077;SOR=1.947 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,16:122:99:0|1:1895813_A_T:339,0,5640 20 1895815 rs17853846 A G 352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.903;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=23.741;MLEAC=1;MLEAF=0.5;MQ=58.49;MQRankSum=-10.458;QD=2.94;ReadPosRankSum=-2.269;SOR=1.795 GT:AD:DP:GQ:PGT:PID:PL 0/1:105,15:120:99:0|1:1895813_A_T:381,0,5637 20 1895820 rs17855610 C T 234.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.017;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=17.817;MLEAC=1;MLEAF=0.5;MQ=58.58;MQRankSum=-10.069;QD=1.92;ReadPosRankSum=-2.166;SOR=1.633 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,14:122:99:0|1:1895813_A_T:263,0,5752 20 1895826 rs17855611 G A 216.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.058;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=14.389;MLEAC=1;MLEAF=0.5;MQ=58.55;MQRankSum=-10.238;QD=1.72;ReadPosRankSum=-1.882;SOR=1.108 GT:AD:DP:GQ:PGT:PID:PL 0/1:112,14:126:99:0|1:1895813_A_T:245,0,6004 20 1895835 rs17855612 C T 294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=8.618;MLEAC=1;MLEAF=0.5;MQ=58.56;MQRankSum=-10.445;QD=2.25;ReadPosRankSum=-1.808;SOR=0.647 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,14:131:99:0|1:1895813_A_T:323,0,6291 20 1895842 rs17853847 T C 569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.5;MQ=57.99;MQRankSum=-11.338;QD=3.96;ReadPosRankSum=-4.813;SOR=0.258 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,27:144:99:0|1:1895813_A_T:598,0,6025 20 1895889 rs72620874 G C 621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.805;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.5;MQ=57.89;MQRankSum=-11.891;QD=3.17;ReadPosRankSum=1.31;SOR=0.981 GT:AD:DP:GQ:PL 0/1:156,40:196:99:650,0,4434 20 1895949 rs148409797 A AGT 1709.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.5;MQ=56.69;MQRankSum=-14.08;QD=7.07;ReadPosRankSum=-0.578;SOR=0.952 GT:AD:DP:GQ:PGT:PID:PL 0/1:187,55:242:99:0|1:1895949_A_AGT:1747,0,7687 20 1895950 . CCT C 1709.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.761;ClippingRankSum=0;DP=243;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.5;MQ=56.67;MQRankSum=-14.08;QD=7.07;ReadPosRankSum=-0.393;SOR=0.952 GT:AD:DP:GQ:PGT:PID:PL 0/1:187,55:242:99:0|1:1895949_A_AGT:1747,0,7687 20 1895963 rs17855613 A G 1696.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.951;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=7.86;MLEAC=1;MLEAF=0.5;MQ=56.52;MQRankSum=-14.203;QD=7.07;ReadPosRankSum=-0.518;SOR=1.237 GT:AD:DP:GQ:PGT:PID:PL 0/1:186,54:240:99:0|1:1895963_A_G:1725,0,7553 20 1895965 rs17855614 C A 1696.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=6.614;MLEAC=1;MLEAF=0.5;MQ=56.41;MQRankSum=-14.183;QD=7.1;ReadPosRankSum=-0.848;SOR=1.171 GT:AD:DP:GQ:PGT:PID:PL 0/1:184,55:239:99:0|1:1895963_A_G:1725,0,7553 20 1895984 rs17855615 C A 2053.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.256;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=22.217;MLEAC=1;MLEAF=0.5;MQ=55.91;MQRankSum=-15.172;QD=7.99;ReadPosRankSum=-2.064;SOR=1.744 GT:AD:DP:GQ:PGT:PID:PL 0/1:192,65:257:99:0|1:1895984_C_A:2082,0,7842 20 1895990 rs17855616 G A 2172.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.024;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=24.107;MLEAC=1;MLEAF=0.5;MQ=56.11;MQRankSum=-14.585;QD=8.39;ReadPosRankSum=-1.696;SOR=1.731 GT:AD:DP:GQ:PGT:PID:PL 0/1:194,65:259:99:0|1:1895984_C_A:2201,0,7837 20 1896051 rs139878822 CCGA C 3667.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=8.853;MLEAC=1;MLEAF=0.5;MQ=57.44;MQRankSum=-9.201;QD=13.19;ReadPosRankSum=2.36;SOR=0.368 GT:AD:DP:GQ:PGT:PID:PL 0/1:178,100:278:99:0|1:1896051_CCGA_C:3705,0,7116 20 1896059 rs115287948 G A 3755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0;DB;DP=273;ExcessHet=3.0103;FS=10.031;MLEAC=1;MLEAF=0.5;MQ=57.42;MQRankSum=-8.919;QD=13.81;ReadPosRankSum=2.269;SOR=0.35 GT:AD:DP:GQ:PGT:PID:PL 0/1:170,102:272:99:0|1:1896051_CCGA_C:3784,0,6954 20 1896060 rs114499682 T C 3755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=8.864;MLEAC=1;MLEAF=0.5;MQ=57.4;MQRankSum=-8.802;QD=13.91;ReadPosRankSum=2.051;SOR=0.379 GT:AD:DP:GQ:PGT:PID:PL 0/1:167,103:270:99:0|1:1896051_CCGA_C:3784,0,6954 20 1896100 rs6136375 C T 6756.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.29;QD=30.44;SOR=1.301 GT:AD:DP:GQ:PL 1/1:0,222:222:99:6785,665,0 20 2082732 rs6112857 C G 3309.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.781;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-0.523;SOR=0.84 GT:AD:DP:GQ:PL 0/1:150,135:285:99:3338,0,3717 20 2290333 rs214803 C A 5343.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.943;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.36;ReadPosRankSum=1.749;SOR=0.313 GT:AD:DP:GQ:PL 1/1:1,175:176:99:5372,517,0 20 2315929 rs2076406 C T 2140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=0.27;SOR=0.736 GT:AD:DP:GQ:PL 0/1:117,95:212:99:2169,0,3039 20 2321105 rs214830 G C 2961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.052;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=0.507;SOR=0.826 GT:AD:DP:GQ:PL 0/1:138,125:265:99:2990,0,3256 20 2375262 rs2076405 A G 6014.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=1.44 GT:AD:DP:GQ:PL 1/1:0,188:188:99:6043,564,0 20 2380396 rs2076404 G A 2615.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.42;SOR=1.9 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2644,256,0 20 2413125 rs2076653 C T 1965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.501;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=1.418;SOR=0.895 GT:AD:DP:GQ:PL 0/1:103,83:186:99:1994,0,2583 20 2413126 rs6036467 C T 6951.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.21;SOR=1.387 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6980,577,0 20 2413266 . G A 2542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0;DP=201;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.78;ReadPosRankSum=2.07;SOR=0.744 GT:AD:DP:GQ:PL 0/1:96,103:199:99:2571,0,2483 20 2539387 rs6050063 G A 7161.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7190,709,0 20 2552805 rs1883981 T A 554.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=6.035;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.261;SOR=0.196 GT:AD:DP:GQ:PL 0/1:21,31:52:99:583,0,651 20 2552884 rs11908093 A G 505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=9.794;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.32;ReadPosRankSum=0.418;SOR=1.477 GT:AD:DP:GQ:PL 0/1:50,30:80:99:534,0,1246 20 2552926 rs1883980 T C 971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.058;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.18;ReadPosRankSum=-1.783;SOR=0.968 GT:AD:DP:GQ:PL 0/1:25,39:64:99:1000,0,887 20 2559778 rs6083735 G C 1636.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.118 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1665,162,0 20 2560716 rs2422794 T G 569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.776;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0;SOR=0.551 GT:AD:DP:GQ:PL 0/1:33,28:61:99:598,0,696 20 2591232 rs6050576 C T 1889.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.425;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=-1.161;SOR=0.734 GT:AD:DP:GQ:PL 0/1:91,83:174:99:1918,0,2158 20 2593006 rs1015159 A G 1992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.314;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.03;ReadPosRankSum=0.503;SOR=0.921 GT:AD:DP:GQ:PL 0/1:61,81:142:99:2021,0,1332 20 2593863 rs6515646 T C 1998.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.998;SOR=0.476 GT:AD:DP:GQ:PL 0/1:89,90:179:99:2027,0,2085 20 2616556 rs910271 T C 829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=0.967;SOR=0.455 GT:AD:DP:GQ:PL 0/1:46,39:85:99:858,0,1060 20 2618140 rs6083915 T C 723.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.136;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.54;ReadPosRankSum=1.879;SOR=0.683 GT:AD:DP:GQ:PL 0/1:59,37:96:99:752,0,1369 20 2633296 rs6138678 G C 1209.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.604;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=5.373;MLEAC=1;MLEAF=0.5;MQ=63.58;MQRankSum=7.209;QD=13.29;ReadPosRankSum=1.678;SOR=1.244 GT:AD:DP:GQ:PL 0/1:48,43:91:99:1238,0,1222 20 2633325 rs150527448 GGGGCGC G 1581.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.5;MQ=64.15;MQRankSum=-7.617;QD=16.83;ReadPosRankSum=-0.793;SOR=0.297 GT:AD:DP:GQ:PL 0/1:51,43:94:99:1619,0,2012 20 2633936 rs2073194 T C 3511.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=1.198 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3540,356,0 20 2637071 rs8958 T C 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.361;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=1.746;SOR=0.876 GT:AD:DP:GQ:PL 0/1:71,73:144:99:1779,0,1697 20 2644407 rs2073193 C G 5372.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5401,524,0 20 2776975 rs41310169 C T 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.393;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.64;ReadPosRankSum=-2.424;SOR=0.618 GT:AD:DP:GQ:PL 0/1:128,103:231:99:2487,0,3068 20 2796007 rs12625619 G A 3264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.434;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=2.32;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.64;ReadPosRankSum=-0.292;SOR=0.863 GT:AD:DP:GQ:PL 0/1:98,125:223:99:3293,0,2733 20 2797015 rs215561 G A 1982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.398;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=0.388;SOR=0.493 GT:AD:DP:GQ:PL 0/1:106,82:188:99:2011,0,2787 20 2797137 rs11469869 GCC G,GC 3546.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.17;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.28;MQRankSum=0.447;QD=26.67;ReadPosRankSum=-1.244;SOR=0.811 GT:AD:DP:GQ:PL 1/2:6,87,40:139:99:3584,638,828,2279,0,2062 20 2816821 rs2274669 C T 1415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.837;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.469;SOR=0.726 GT:AD:DP:GQ:PL 0/1:68,54:122:99:1444,0,2081 20 2840773 rs3818605 C T 2789.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.642;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.45;ReadPosRankSum=1.48;SOR=0.56 GT:AD:DP:GQ:PL 0/1:92,101:193:99:2818,0,2408 20 2842685 rs6051449 A C 1061.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.568;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.64;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.32;ReadPosRankSum=0.745;SOR=0.751 GT:AD:DP:GQ:PL 0/1:93,52:145:99:1090,0,2216 20 2996497 rs1178016 C T 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.164;SOR=0.653 GT:AD:DP:GQ:PL 0/1:39,38:77:99:841,0,991 20 3025107 rs6051545 C T 1218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.141;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.573;SOR=0.888 GT:AD:DP:GQ:PL 0/1:64,54:118:99:1247,0,1548 20 3026345 rs16996832 A AGCCCC 586.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.179;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=16.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.72;ReadPosRankSum=1.372;SOR=2.573 GT:AD:DP:GQ:PL 0/1:57,19:78:99:624,0,3084 20 3090848 rs708973 T G 3577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-2.777;SOR=0.787 GT:AD:DP:GQ:PL 0/1:134,159:293:99:3606,0,3013 20 3147024 rs7260750 G A 4371.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.345 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4400,429,0 20 3147762 rs6051612 A G 11900.8 PASS AC=2;AF=1;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.52;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,366:366:99:11929,1098,0 20 3171337 rs11591 C T 3166.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.512;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=0.025;SOR=0.694 GT:AD:DP:GQ:PL 0/1:134,132:266:99:3195,0,2959 20 3176009 rs2295552 T C 2525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.829;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.2;ReadPosRankSum=0.754;SOR=0.771 GT:AD:DP:GQ:PL 0/1:106,101:207:99:2554,0,2565 20 3185174 rs41281856 A T 1437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.624;SOR=0.662 GT:AD:DP:GQ:PL 0/1:65,66:131:99:1466,0,1570 20 3193978 rs8362 G A 3647.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3676,372,0 20 3204084 rs9101 G A 2860.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.51;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2889,310,0 20 3209371 rs2281575 G A 6134.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6163,591,0 20 3211719 rs3803953 T G 3370.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.794;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.47;ReadPosRankSum=-1.46;SOR=0.672 GT:AD:DP:GQ:PL 0/1:99,134:233:99:3399,0,2267 20 3214819 rs3827075 T G 3350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.201;SOR=0.676 GT:AD:DP:GQ:PL 0/1:128,147:275:99:3379,0,2997 20 3215548 rs3803957 C A 1096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=0.524;SOR=0.46 GT:AD:DP:GQ:PL 0/1:66,52:118:99:1125,0,1628 20 3218634 rs3810562 G C 2952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.405;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=0.484;SOR=0.856 GT:AD:DP:GQ:PL 0/1:157,127:284:99:2981,0,3701 20 3278830 rs199719258 G A 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.139;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=2.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=2.434;SOR=1.051 GT:AD:DP:GQ:PL 0/1:36,32:68:99:784,0,820 20 3285126 rs2254916 A T 519.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.752;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.38;ReadPosRankSum=-2.154;SOR=0.663 GT:AD:DP:GQ:PL 0/1:36,26:62:99:548,0,770 20 3285140 rs2422864 T C 1731.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.93;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1760,185,0 20 3564672 rs235540 C T 4696.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4725,479,0 20 3565546 rs235538 C G 3844.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=1.299 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3873,380,0 20 3624830 rs2246808 G A 1681.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.215;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=0.508;SOR=0.828 GT:AD:DP:GQ:PL 0/1:81,71:152:99:1710,0,1776 20 3640823 rs2853208 C T 1542.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.61;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.819;SOR=0.616 GT:AD:DP:GQ:PL 0/1:64,59:123:99:1571,0,1617 20 3657803 rs568251 A G 6255.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.68;SOR=1.527 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,140:140:99:1|1:3657803_A_G:6284,421,0 20 3657804 rs597165 T A 6255.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.33;SOR=1.592 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,138:138:99:1|1:3657803_A_G:6284,421,0 20 3677357 rs501538 T C 6646.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.74;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6675,610,0 20 3677736 rs673114 T G 1917.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.046;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.21;ReadPosRankSum=-1.519;SOR=0.678 GT:AD:DP:GQ:PL 0/1:69,66:135:99:1946,0,1752 20 3721456 rs3827077 C T 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.389;SOR=0.623 GT:AD:DP:GQ:PL 0/1:68,79:147:99:1809,0,1665 20 3732633 rs541760 C T 3014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.132;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=8.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-0.361;SOR=0.638 GT:AD:DP:GQ:PL 0/1:136,120:256:99:3043,0,3510 20 3759200 rs2281477 G A 2037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=0.805;SOR=0.601 GT:AD:DP:GQ:PL 0/1:109,85:194:99:2066,0,2641 20 3767121 . TGGGGCCCATCCCGGCGCGCCCCCCGCCCCGGGGCCCGGCGCCGCCGCCGCCGCCCCGGGGCGG T 123.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0;DP=91;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.1;ReadPosRankSum=-1.654;SOR=1.646 GT:AD:DP:GQ:PL 0/1:52,7:59:99:161,0,3286 20 3838441 rs17857295 C G 2025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.723;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=0.1;SOR=1.067 GT:AD:DP:GQ:PL 0/1:131,86:217:99:2054,0,3215 20 3844929 rs45437096 C T 4115.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.26;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4144,408,0 20 3870124 rs3737084 G C 8947.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.02;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,271:271:99:8976,813,0 20 4163302 rs1051904 A G 8973.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,305:305:99:9002,914,0 20 4164283 rs1741327 A G 11295.8 PASS AC=2;AF=1;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,389:389:99:11324,1166,0 20 4228735 rs35105284 C T 3728.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.491;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=5.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=0.315;SOR=0.911 GT:AD:DP:GQ:PL 0/1:158,157:315:99:3757,0,3827 20 4705718 rs2245220 C T 2597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.135;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=2.99;SOR=0.617 GT:AD:DP:GQ:PL 0/1:107,109:216:99:2626,0,2483 20 4776445 rs2423004 G A 2317.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.099;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=-0.197;SOR=0.643 GT:AD:DP:GQ:PL 0/1:110,97:207:99:2346,0,2668 20 4880308 rs1776964 G A 4521.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4550,456,0 20 5283256 rs3746682 C G 5576.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.166 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5605,546,0 20 5283376 rs3746684 G A 2371.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.65;SOR=1.639 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2400,238,0 20 5542092 rs2273372 T C 487.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0;DB;DP=34;ExcessHet=3.0103;FS=5.347;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=1.68;SOR=0.202 GT:AD:DP:GQ:PL 0/1:13,21:34:99:516,0,358 20 5548208 rs11475275 TA T 225.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0;DB;DP=35;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.06;ReadPosRankSum=-1.301;SOR=0.446 GT:AD:DP:GQ:PL 0/1:12,16:28:99:263,0,206 20 5559143 rs41282130 G A 1030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=3.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=0.15;SOR=0.856 GT:AD:DP:GQ:PL 0/1:59,45:104:99:1059,0,1527 20 5753579 rs237422 C T 1796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.83;ReadPosRankSum=0.261;SOR=0.693 GT:AD:DP:GQ:PL 0/1:62,78:140:99:1825,0,1410 20 5843710 rs41282136 C T 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=2.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.95;ReadPosRankSum=1.123;SOR=0.91 GT:AD:DP:GQ:PL 0/1:86,67:153:99:1550,0,2054 20 5843812 rs1699233 T C 4719.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=0.878 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4748,451,0 20 5844121 rs1699232 C T 2310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.686;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.26;ReadPosRankSum=0.031;SOR=0.76 GT:AD:DP:GQ:PGT:PID:PL 0/1:60,60:120:99:0|1:5844121_C_T:2339,0,3275 20 5844122 rs1777353 A G 2310.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.42;ReadPosRankSum=-0.243;SOR=0.723 GT:AD:DP:GQ:PGT:PID:PL 0/1:59,60:119:99:0|1:5844121_C_T:2339,0,3275 20 5903067 rs6085324 T A 2667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.734;SOR=0.707 GT:AD:DP:GQ:PL 0/1:113,109:222:99:2696,0,2846 20 5903323 rs910122 G A 3063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=0.573;SOR=0.808 GT:AD:DP:GQ:PL 0/1:142,135:277:99:3092,0,3585 20 5903517 rs236151 A G 6554.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,224:224:99:6583,670,0 20 5903848 rs236152 C G 2356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.268;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.656;SOR=0.717 GT:AD:DP:GQ:PL 0/1:121,98:219:99:2385,0,3063 20 5903894 rs236153 A G 2383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.298;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.14;ReadPosRankSum=-1.707;SOR=0.657 GT:AD:DP:GQ:PL 0/1:134,101:235:99:2412,0,3390 20 5904040 rs742711 G A 2509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=-0.096;SOR=0.719 GT:AD:DP:GQ:PL 0/1:131,112:243:99:2538,0,3268 20 5933108 rs236110 C A 3514.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.68;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3543,377,0 20 5935825 rs145133959 A G 852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.123;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.146;SOR=0.527 GT:AD:DP:GQ:PL 0/1:32,35:67:99:881,0,780 20 5987212 rs149662716 AGGC A 10618.7 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=44.43;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,239:239:99:10656,720,0 20 6096695 rs2295435 C T 623.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.776;SOR=1.044 GT:AD:DP:GQ:PL 0/1:28,24:52:99:652,0,817 20 6100088 rs10373 A G 1677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.219;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-2.586;SOR=0.623 GT:AD:DP:GQ:PL 0/1:65,71:136:99:1706,0,1507 20 6750882 rs2273073 T G 3913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.482;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=1.313;SOR=0.594 GT:AD:DP:GQ:PL 0/1:171,154:325:99:3942,0,4245 20 6751034 rs1049007 A G 3137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.925;SOR=0.656 GT:AD:DP:GQ:PL 0/1:146,126:272:99:3166,0,4011 20 6759115 rs235768 A T 2708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.081;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.288;SOR=0.74 GT:AD:DP:GQ:PL 0/1:106,119:225:99:2737,0,2695 20 8678446 rs2295179 G A 2787.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.688 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2816,273,0 20 8737734 rs2076413 G A 1315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.05;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.02;ReadPosRankSum=1;SOR=0.772 GT:AD:DP:GQ:PL 0/1:96,68:164:99:1344,0,2160 20 8755243 rs2235613 T C 4304.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.32;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4333,455,0 20 8769180 rs2327089 C T 3086.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3115,324,0 20 8770822 rs2294597 C T 904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.538;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.734;SOR=1.006 GT:AD:DP:GQ:PL 0/1:42,39:81:99:933,0,997 20 9424810 rs6039471 A C 912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.808;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.55;ReadPosRankSum=1.682;SOR=0.749 GT:AD:DP:GQ:PL 0/1:20,32:52:99:941,0,452 20 9424904 rs6056629 C A 605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0;DB;DP=41;ExcessHet=3.0103;FS=7.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.77;ReadPosRankSum=-1.335;SOR=1.941 GT:AD:DP:GQ:PL 0/1:17,24:41:99:634,0,420 20 10019093 rs575534 A G 4407.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4436,419,0 20 10026357 rs685723 T C 684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.139;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.35;ReadPosRankSum=1.808;SOR=0.577 GT:AD:DP:GQ:PL 0/1:52,30:82:99:713,0,1375 20 10030188 rs652633 T A 2987.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.655;SOR=0.773 GT:AD:DP:GQ:PL 0/1:145,134:279:99:3016,0,3181 20 10030452 rs524625 G A 2336.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.08;ReadPosRankSum=1.684;SOR=0.714 GT:AD:DP:GQ:PL 0/1:76,90:166:99:2365,0,1924 20 10032413 rs683145 T G 1810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.087;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=2.979;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.097;SOR=0.458 GT:AD:DP:GQ:PL 0/1:66,79:145:99:1839,0,1465 20 10620386 rs1051419 A G 5365.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5394,516,0 20 10633237 rs1131695 G A 1502.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=2.332;SOR=0.654 GT:AD:DP:GQ:PL 0/1:64,67:131:99:1531,0,1456 20 10639222 rs1801138 G A 1455.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.359;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.124;SOR=0.764 GT:AD:DP:GQ:PL 0/1:48,60:108:99:1484,0,1344 20 10639385 rs2273060 A G 837.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.18;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=0.472;SOR=0.84 GT:AD:DP:GQ:PL 0/1:39,35:74:99:866,0,1031 20 12989901 rs3761896 T C 753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.009;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.28;ReadPosRankSum=-2.685;SOR=0.99 GT:AD:DP:GQ:PL 0/1:57,34:91:99:782,0,1378 20 12990044 rs3761895 T C 2580.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2609,255,0 20 13029764 rs1431433 A C 3601.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.78;SOR=1.417 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3630,351,0 20 13029790 rs6078899 C T 859.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-1.437;SOR=0.85 GT:AD:DP:GQ:PL 0/1:51,37:88:99:888,0,1403 20 13053018 rs243887 T G 1182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.721;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.16;ReadPosRankSum=1.041;SOR=0.767 GT:AD:DP:GQ:PL 0/1:94,51:145:99:1211,0,2253 20 13071871 rs243874 C A 1044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-0.341;SOR=0.693 GT:AD:DP:GQ:PL 0/1:78,48:126:99:1073,0,2172 20 13074235 rs708937 G A 3126.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.58;SOR=0.941 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,79:79:99:1|1:13074235_G_A:3155,241,0 20 13074243 rs1011290 T A 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.63;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.95;ReadPosRankSum=-0.963;SOR=0.373 GT:AD:DP:GQ:PGT:PID:PL 0/1:30,51:81:99:0|1:13074235_G_A:1158,0,661 20 13090745 rs2236126 G C 720.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.597;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.527;SOR=0.884 GT:AD:DP:GQ:PL 0/1:35,30:65:99:749,0,1026 20 13561632 rs372666596 T TA,TAA 1502.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.142;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=18.33;ReadPosRankSum=-0.342;SOR=0.959 GT:AD:DP:GQ:PL 1/2:13,25,44:109:99:1540,806,920,164,0,363 20 13695824 rs372853781 CA C 96.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.813;QD=0.88;ReadPosRankSum=2.563;SOR=0.956 GT:AD:DP:GQ:PL 0/1:90,20:118:99:134,0,2051 20 13698006 rs4239710 T C 4080.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=1.129 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4109,404,0 20 13765942 rs3831170 CCCGCGGGG C 2582.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.072;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.24;MQRankSum=4.682;QD=16.77;ReadPosRankSum=-0.953;SOR=0.671 GT:AD:DP:GQ:PL 0/1:80,74:154:99:2620,0,5065 20 13830137 rs2073290 A C 1944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.13;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.682;SOR=0.666 GT:AD:DP:GQ:PL 0/1:74,75:149:99:1973,0,1838 20 13845987 rs761811 C T 3340.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3369,336,0 20 13847420 rs660710 A G 5123.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.47;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5152,538,0 20 14306896 rs6042672 G A 2176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.071;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.765;SOR=0.807 GT:AD:DP:GQ:PL 0/1:109,89:198:99:2205,0,2650 20 14306953 rs6079391 G T 2434.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=0.988;SOR=0.792 GT:AD:DP:GQ:PL 0/1:94,101:195:99:2463,0,2366 20 16025289 rs80044408 G T 839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.804;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.101;SOR=0.626 GT:AD:DP:GQ:PL 0/1:47,38:85:99:868,0,1074 20 16729654 rs10627353 A AAGATG 1641.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=7.511;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=0.977;QD=20.02;ReadPosRankSum=-0.395;SOR=1.532 GT:AD:DP:GQ:PL 0/1:39,43:82:99:1679,0,2545 20 17474791 rs6080717 G A 2419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.989;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=0.785;SOR=0.728 GT:AD:DP:GQ:PL 0/1:106,101:207:99:2448,0,2452 20 17474968 rs6080718 T C 8657.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.85;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,290:290:99:8686,870,0 20 17597361 rs911348 A G 2766.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.67;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2795,299,0 20 17600357 rs11960 G A 2443.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.93;SOR=1.439 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2472,237,0 20 17605240 rs6034867 A T 3494.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3523,369,0 20 17640009 rs13040917 A C 12985.8 PASS AC=2;AF=1;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.3;QD=29.72;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,437:437:99:13014,1304,0 20 17705664 rs2296905 G A 2050.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.3;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=0.137;SOR=0.499 GT:AD:DP:GQ:PL 0/1:81,92:173:99:2079,0,1892 20 17705677 rs4814640 A G 5367.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5396,549,0 20 17716416 rs1053993 C G 6019.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,189:189:99:6048,566,0 20 17950545 rs11551768 A T 1385.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.59;ReadPosRankSum=1.796;SOR=0.749 GT:AD:DP:GQ:PL 0/1:48,54:102:99:1414,0,1178 20 18005600 rs2281543 A C 2707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.362;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=2.2;SOR=0.538 GT:AD:DP:GQ:PL 0/1:123,108:231:99:2736,0,3042 20 18022171 rs1571431 C T 2835.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.039;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-2.242;SOR=0.765 GT:AD:DP:GQ:PL 0/1:125,123:248:99:2864,0,2816 20 18143117 rs1205193 T G 11030.8 PASS AC=2;AF=1;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,370:370:99:11059,1109,0 20 18143355 rs1205194 C T 3744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.947;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.901;SOR=0.633 GT:AD:DP:GQ:PL 0/1:169,152:321:99:3773,0,4098 20 18167977 rs2747404 T C 7738.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,260:260:99:7767,779,0 20 18296072 rs1033545 T A 8974.77 PASS AC=2;AF=1;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.27;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,287:287:99:9003,862,0 20 18393312 rs6075337 C G 1972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.039;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=1.22;SOR=0.816 GT:AD:DP:GQ:PL 0/1:99,80:179:99:2001,0,2604 20 18393499 rs6075338 C T 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=2.28;SOR=0.875 GT:AD:DP:GQ:PL 0/1:86,63:149:99:1372,0,2211 20 18395988 rs6035037 C T 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.278;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-0.452;SOR=0.697 GT:AD:DP:GQ:PL 0/1:130,84:214:99:1897,0,3186 20 18414356 rs6035042 A G 1885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.42;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=-1.867;SOR=0.735 GT:AD:DP:GQ:PL 0/1:73,87:160:99:1914,0,1625 20 18445963 rs6035051 A G 2701.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=29.69;SOR=0.715 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2730,273,0 20 18462421 rs1055171 A G 1311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.515;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.99;ReadPosRankSum=0.651;SOR=1.14 GT:AD:DP:GQ:PL 0/1:44,57:101:99:1340,0,869 20 18464110 rs3827965 T C 253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.375;ClippingRankSum=0;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.76;ReadPosRankSum=-0.731;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL 0/1:15,11:26:99:1|0:18464101_A_G:282,0,597 20 18488065 rs6075350 G C 2307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.17;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=0.825;SOR=0.544 GT:AD:DP:GQ:PL 0/1:80,93:173:99:2336,0,1993 20 18511456 rs6081189 A G 2974.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.59;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,86:86:99:3003,256,0 20 18511458 . CT C 219.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0;DP=87;ExcessHet=3.0103;FS=10.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.28;ReadPosRankSum=2.559;SOR=0.178 GT:AD:DP:GQ:PL 0/1:48,19:78:99:257,0,1079 20 18523002 rs2273526 C G 2139.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.56;ReadPosRankSum=0.973;SOR=0.581 GT:AD:DP:GQ:PL 0/1:62,85:147:99:2168,0,1519 20 18529233 rs3736775 T A 1260.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.648;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.16;ReadPosRankSum=-1.48;SOR=0.857 GT:AD:DP:GQ:PL 0/1:30,48:78:99:1289,0,672 20 19261623 rs1569767 G A 5354.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.13;SOR=1.07 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5383,516,0 20 19560664 rs3790261 G A 2445.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=27.18;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2474,267,0 20 19634732 rs3790278 G A 2720.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2749,279,0 20 19634747 rs3790279 T C 3136.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3165,288,0 20 19970705 rs2076584 C T 1786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.949;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.16;SOR=0.468 GT:AD:DP:GQ:PL 0/1:73,83:156:99:1815,0,1849 20 20006368 rs7263 T C 973.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.151;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-1.065;SOR=0.617 GT:AD:DP:GQ:PL 0/1:47,44:91:99:1002,0,1087 20 20032998 rs2255255 T C 2659.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.393;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.252;SOR=0.69 GT:AD:DP:GQ:PL 0/1:103,105:208:99:2688,0,2528 20 20033137 rs2255258 T A 7313.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7342,710,0 20 20033242 rs2273057 A T 2606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.9;ReadPosRankSum=-0.835;SOR=0.772 GT:AD:DP:GQ:PL 0/1:98,104:202:99:2635,0,2362 20 20033319 rs2273058 A G 2392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.508;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=1.873;SOR=0.736 GT:AD:DP:GQ:PL 0/1:112,95:207:99:2421,0,2614 20 20033367 rs7508949 C G 1841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.47;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=5.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-2.694;SOR=1.156 GT:AD:DP:GQ:PL 0/1:92,71:163:99:1870,0,2397 20 20033380 rs3817995 A G 1447.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.633;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=4.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.42;ReadPosRankSum=-3.058;SOR=1.115 GT:AD:DP:GQ:PL 0/1:81,58:139:99:1476,0,2098 20 20071634 rs6046614 T C 2922.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2951,287,0 20 20144772 rs6081901 G A 1776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.497;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=3.531;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=1.359;SOR=0.958 GT:AD:DP:GQ:PL 0/1:90,79:169:99:1805,0,1987 20 20348962 rs111558392 C T 737.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.783;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=9.227;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.53;ReadPosRankSum=-1.166;SOR=1.67 GT:AD:DP:GQ:PL 0/1:64,34:98:99:766,0,1587 20 20493222 rs35039408 G A 5273.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5302,540,0 20 21106714 rs5840900 C CG 4502.73 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.45;SOR=1.075 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4540,388,0 20 21126194 rs6047271 C G 1394.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=1.414 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1423,134,0 20 21142523 rs4815025 C G 2354.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=1.04 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2383,234,0 20 21142813 rs2236178 T C 3542.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3571,324,0 20 21186161 rs11087346 A AG 1778.73 PASS AC=2;AF=1;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.88;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1816,153,0 20 21336825 rs3787500 G A 2077.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.08;SOR=0.864 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2106,222,0 20 21362703 rs11476840 TA T 4353.73 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=31.55;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4391,415,0 20 21687344 rs17861031 G A 2253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.21;ReadPosRankSum=0.508;SOR=0.896 GT:AD:DP:GQ:PL 0/1:106,95:201:99:2282,0,2807 20 22562674 rs1212275 T C 10100.8 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.96;SOR=0.799 GT:AD:DP:GQ:PL 1/1:0,316:316:99:10129,946,0 20 23016970 rs3746726 T G 7186.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=0.838 GT:AD:DP:GQ:PL 1/1:0,219:219:99:7215,657,0 20 23017017 rs2567609 T C 7731.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.52;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,224:224:99:7760,672,0 20 23017044 rs3746728 C T 6557.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6586,643,0 20 23017082 rs2567608 T C 7864.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7893,740,0 20 23066338 rs6048539 G C 6651.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.98;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6680,624,0 20 23472391 rs2983288 A G 3973.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.6;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4002,431,0 20 23546639 rs2295564 T G 1219.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.438;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=5.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.21;ReadPosRankSum=0.066;SOR=0.28 GT:AD:DP:GQ:PL 0/1:22,45:67:99:1248,0,501 20 23586360 rs2983640 G A 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.648;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.519;SOR=0.789 GT:AD:DP:GQ:PL 0/1:90,63:153:99:1625,0,2170 20 23618395 rs6138024 T C 7570.77 PASS AC=2;AF=1;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7599,773,0 20 23618427 rs1064039 C T 2042.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.114;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=3.864;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.92;ReadPosRankSum=-1.084;SOR=0.97 GT:AD:DP:GQ:PL 0/1:137,92:229:99:2071,0,3305 20 23666606 rs112139500 C T 1819.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.5;MQ=57.47;MQRankSum=-0.984;QD=11.74;ReadPosRankSum=0.055;SOR=0.542 GT:AD:DP:GQ:PL 0/1:75,80:155:99:1848,0,1918 20 23729722 rs3188314 G T 8098.77 PASS AC=2;AF=1;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.78;QD=29.24;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,277:277:99:8127,830,0 20 23731494 rs6076122 A G 4322.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.82;MQRankSum=-0.101;QD=32.26;ReadPosRankSum=2.093;SOR=0.629 GT:AD:DP:GQ:PL 1/1:1,133:134:99:4351,366,0 20 23805832 rs6036548 G A 5065.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.95;QD=30.15;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5094,504,0 20 23807308 rs6106731 G C 1535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.438;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=8.095;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.25;SOR=0.308 GT:AD:DP:GQ:PL 0/1:63,68:131:99:1564,0,1731 20 23860178 rs1799841 A G 5233.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5262,532,0 20 24524218 rs4815274 C G 5987.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.27;SOR=1.237 GT:AD:DP:GQ:PL 1/1:0,180:180:99:6016,540,0 20 24939590 rs1056033 G C 1203.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=1.196;SOR=0.737 GT:AD:DP:GQ:PL 0/1:53,52:105:99:1232,0,1305 20 24959385 rs6083703 A C 1479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.553;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=6.306;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.27;ReadPosRankSum=-1.778;SOR=0.275 GT:AD:DP:GQ:PGT:PID:PL 0/1:34,39:73:99:0|1:24959382_C_G:1508,0,1233 20 25038484 rs66817095 G T 2922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.37;SOR=0.669 GT:AD:DP:GQ:PL 0/1:144,124:268:99:2951,0,3663 20 25059442 rs6138482 C T 2188.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.848;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-1.082;SOR=0.916 GT:AD:DP:GQ:PL 0/1:120,97:217:99:2217,0,3171 20 25062715 rs8123716 C A 2491.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.704;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=6.132;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=0.545;SOR=0.408 GT:AD:DP:GQ:PL 0/1:102,94:196:99:2520,0,2587 20 25187213 rs2076559 G A 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.502;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.75;ReadPosRankSum=-1.281;SOR=0.83 GT:AD:DP:GQ:PL 0/1:60,37:97:99:780,0,1462 20 25193949 rs2076561 G A 2048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.083;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=0.301;SOR=0.858 GT:AD:DP:GQ:PL 0/1:96,91:187:99:2077,0,2199 20 25195509 rs6050446 A G 1683.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.922 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1712,168,0 20 25259006 rs2228976 G T 3373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0;DB;DP=302;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.736;QD=11.21;ReadPosRankSum=1.483;SOR=0.706 GT:AD:DP:GQ:PL 0/1:150,151:301:99:3402,0,3552 20 25260931 rs2227890 A G 1672.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.803;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.45;ReadPosRankSum=-0.767;SOR=0.751 GT:AD:DP:GQ:PL 0/1:102,75:177:99:1701,0,2391 20 25262769 rs2227891 G A 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=0.415;SOR=0.795 GT:AD:DP:GQ:PL 0/1:88,97:185:99:2073,0,1887 20 25262789 rs2261790 T C 2082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.059;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.64;ReadPosRankSum=-0.338;SOR=0.947 GT:AD:DP:GQ:PL 0/1:85,94:179:99:2111,0,1667 20 25264814 rs2227892 T C 3283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.699;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=1.628;SOR=0.746 GT:AD:DP:GQ:PL 0/1:104,135:239:99:3312,0,2311 20 25276297 rs1130694 G A 1229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.65;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.54;ReadPosRankSum=-0.055;SOR=0.583 GT:AD:DP:GQ:PL 0/1:83,61:144:99:1258,0,2215 20 25282944 rs10966 A G 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.52;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=1.1;SOR=0.473 GT:AD:DP:GQ:PL 0/1:86,87:173:99:2100,0,2044 20 25288632 rs6107027 G A 472.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.45;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.27;ReadPosRankSum=0.75;SOR=0.957 GT:AD:DP:GQ:PL 0/1:41,24:65:99:501,0,1055 20 25398790 rs6076347 G A 568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.846;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=5.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-1.984;SOR=1.303 GT:AD:DP:GQ:PL 0/1:32,25:57:99:597,0,737 20 25456888 rs437635 A G 3127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.108;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.36;ReadPosRankSum=-0.611;SOR=0.653 GT:AD:DP:GQ:PL 0/1:130,123:253:99:3156,0,3109 20 25457049 rs68078266 GCTCCCA G 4516.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.192;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=3.4;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.896;QD=17.24;ReadPosRankSum=0.837;SOR=0.64 GT:AD:DP:GQ:PL 0/1:142,120:262:99:4554,0,11288 20 29978216 rs2206381 T C 3584.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.79;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3613,386,0 20 30064232 rs201389128 A AC 935.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=3.781;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=2.221;QD=9.36;ReadPosRankSum=-1.069;SOR=0.411 GT:AD:DP:GQ:PL 0/1:57,43:105:99:973,0,1406 20 30064331 rs1006459 A G 2387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.531;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=1.016;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.637;QD=10.38;ReadPosRankSum=-1.164;SOR=0.74 GT:AD:DP:GQ:PL 0/1:131,99:230:99:2416,0,3108 20 30157026 rs4607 A G 771.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.094;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=-0.207;SOR=0.817 GT:AD:DP:GQ:PL 0/1:46,38:84:99:800,0,1015 20 30193538 rs15817 A G 2697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.236;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=1.58;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.58;ReadPosRankSum=-1.48;SOR=0.75 GT:AD:DP:GQ:PL 0/1:116,117:233:99:2726,0,2705 20 30354417 rs13044019 G A 1547.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.129;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=-0.308;SOR=0.668 GT:AD:DP:GQ:PL 0/1:90,74:164:99:1576,0,2009 20 30381758 rs1062794 G C 1905.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.78;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=0.304;SOR=0.747 GT:AD:DP:GQ:PL 0/1:111,83:194:99:1934,0,2692 20 30382315 rs3203770 A G 2732.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.328;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=-0.54;SOR=0.798 GT:AD:DP:GQ:PL 0/1:82,118:200:99:2761,0,1698 20 30385192 rs6058463 C T 1024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.243;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=1.902;SOR=0.806 GT:AD:DP:GQ:PL 0/1:52,46:100:99:1053,0,1188 20 30412101 rs41293106 C T 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=4.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.94;ReadPosRankSum=0.415;SOR=0.9 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2150,0,2705 20 30433139 rs6089096 G A 2813.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=1.763;SOR=0.756 GT:AD:DP:GQ:PL 0/1:93,110:203:99:2842,0,2421 20 30433352 rs6121246 C T 2407.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.424;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.54;ReadPosRankSum=0.003;SOR=0.52 GT:AD:DP:GQ:PL 0/1:92,100:192:99:2436,0,2096 20 30437522 rs3746599 A G 3200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.017;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=2.311;SOR=0.847 GT:AD:DP:GQ:PL 0/1:132,136:268:99:3229,0,2815 20 30449325 rs947310 C G 4131.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0;DB;DP=394;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=-0.797;SOR=0.607 GT:AD:DP:GQ:PL 0/1:214,179:393:99:4160,0,5279 20 30452782 rs4911536 C T 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-0.373;SOR=0.637 GT:AD:DP:GQ:PL 0/1:86,71:157:99:1527,0,1954 20 30513735 rs4911195 C T 1411.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.74;ReadPosRankSum=1.505;SOR=0.737 GT:AD:DP:GQ:PL 0/1:79,66:145:99:1440,0,2130 20 30605976 . AGGGGGCGGGGGCGGGGGAGGGGC A 372.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.75;MQRankSum=1.481;QD=28.67;ReadPosRankSum=0.498;SOR=2.833 GT:AD:DP:GQ:PL 0/1:2,11:13:72:410,0,72 20 30742996 rs1205843 G T 1107.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.79;ReadPosRankSum=1.212;SOR=0.674 GT:AD:DP:GQ:PL 0/1:72,54:126:99:1136,0,1803 20 30746248 rs6061195 T C 1514.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.388;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=2.178;SOR=0.994 GT:AD:DP:GQ:PL 0/1:80,62:142:99:1543,0,1968 20 30795819 rs1923095 T C 1600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=3.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=-0.098;SOR=0.846 GT:AD:DP:GQ:PL 0/1:101,75:176:99:1629,0,2405 20 30915461 rs1129012 T C 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.642;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=4.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=-2.119;SOR=1.036 GT:AD:DP:GQ:PL 0/1:66,71:137:99:1708,0,1408 20 31022959 rs6058694 T C 7661.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.06;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,239:239:99:7690,716,0 20 31292298 rs59379723 CA C 292.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.14;ReadPosRankSum=1.551;SOR=0.659 GT:AD:DP:GQ:PL 0/1:32,25:78:99:330,0,1007 20 31367948 rs6058885 C T 2775.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.497;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=2.146;SOR=0.746 GT:AD:DP:GQ:PL 0/1:101,130:231:99:2804,0,2464 20 31386347 rs6058891 T C 3341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.656;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.946;SOR=0.793 GT:AD:DP:GQ:PL 0/1:131,129:260:99:3370,0,3036 20 31386449 rs2424922 T C 3102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.04;ReadPosRankSum=1.275;SOR=0.551 GT:AD:DP:GQ:PL 0/1:92,129:221:99:3131,0,2265 20 31387954 rs1997797 C G 1485.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.565;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=-0.772;SOR=0.686 GT:AD:DP:GQ:PL 0/1:87,62:149:99:1514,0,2248 20 31388636 rs2424928 T C 754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.034;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.33;ReadPosRankSum=-1.2;SOR=0.795 GT:AD:DP:GQ:PL 0/1:67,36:103:99:783,0,1597 20 31421509 rs41289868 C T 811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.004;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=6.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.591;SOR=1.528 GT:AD:DP:GQ:PL 0/1:41,32:73:99:840,0,993 20 31480961 rs2377734 C T 5054.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=1.495 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5083,482,0 20 31496192 rs67457409 A G 2557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.481;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-0.262;SOR=0.663 GT:AD:DP:GQ:PL 0/1:117,109:226:99:2586,0,2648 20 31505292 rs13037781 C T 5356.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5385,530,0 20 31518298 rs6058961 A G 2526.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=1.319;SOR=0.68 GT:AD:DP:GQ:PL 0/1:95,106:201:99:2555,0,2225 20 31549123 rs36022156 C T 3332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0;DB;DP=290;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.319;SOR=0.611 GT:AD:DP:GQ:PL 0/1:139,151:290:99:3361,0,3291 20 31549424 rs11167189 G A 1207.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=-1.081;SOR=0.754 GT:AD:DP:GQ:PL 0/1:44,46:90:99:1236,0,1317 20 31573528 rs2274343 A C 5602.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=1.504 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5631,528,0 20 31590686 rs1133358 C A 1739.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=0.654;SOR=0.565 GT:AD:DP:GQ:PL 0/1:91,78:169:99:1768,0,2081 20 31596472 rs6088066 A T 1100.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.23;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.09;ReadPosRankSum=0.091;SOR=0.706 GT:AD:DP:GQ:PL 0/1:81,55:136:99:1129,0,1770 20 31609581 rs17124003 C T 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.81;ReadPosRankSum=-1.287;SOR=0.518 GT:AD:DP:GQ:PL 0/1:91,34:125:99:630,0,2501 20 31619515 rs41293138 G A 1700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.393;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=1.264;SOR=0.427 GT:AD:DP:GQ:PL 0/1:64,74:138:99:1729,0,1418 20 31671209 rs13036385 G C 1744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.958;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=4.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.183;SOR=1.094 GT:AD:DP:GQ:PL 0/1:95,70:165:99:1773,0,2271 20 31671599 rs4339026 A G 2920.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.985;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.6;ReadPosRankSum=-2.111;SOR=0.508 GT:AD:DP:GQ:PL 0/1:94,106:200:99:2949,0,2350 20 31671663 rs2424945 T C 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.225;SOR=0.732 GT:AD:DP:GQ:PL 0/1:83,85:168:99:2158,0,2122 20 31671693 rs3926669 C T 1700.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.339;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=1.305;SOR=0.857 GT:AD:DP:GQ:PL 0/1:64,65:129:99:1729,0,1612 20 31678534 rs2070326 T C 1825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.412;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=-0.491;SOR=0.654 GT:AD:DP:GQ:PL 0/1:50,71:121:99:1854,0,1110 20 31685405 rs13041016 C T 1225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.762;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=4.335;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=1.362;SOR=0.357 GT:AD:DP:GQ:PL 0/1:56,47:103:99:1254,0,1777 20 31688241 rs11699009 T C 2911.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.122 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2940,294,0 20 31688260 rs11696307 C T 2996.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.76;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3025,332,0 20 31812923 rs3818222 G A 1008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.861;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=1.379;SOR=0.824 GT:AD:DP:GQ:PL 0/1:62,45:107:99:1037,0,1505 20 31897554 rs1999663 G C 1436.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.409;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=1.11;SOR=0.655 GT:AD:DP:GQ:PL 0/1:52,55:107:99:1465,0,1288 20 31954819 rs368904466 TA T 121.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=1.377;QD=1.76;ReadPosRankSum=-0.534;SOR=0.503 GT:AD:DP:GQ:PL 0/1:53,16:82:99:159,0,1242 20 31981849 rs291700 T C 1720.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1749,176,0 20 32212690 rs3803939 C T 1596.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.681;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=0.158;SOR=0.666 GT:AD:DP:GQ:PL 0/1:110,73:183:99:1625,0,2561 20 32295541 rs910397 C T 2566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=2.23;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=1.112;SOR=0.859 GT:AD:DP:GQ:PL 0/1:126,106:232:99:2595,0,3241 20 32376745 rs140105337 C T 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.701;SOR=0.607 GT:AD:DP:GQ:PL 0/1:58,57:115:99:1336,0,1570 20 32379263 rs2626551 T C 8578.77 PASS AC=2;AF=1;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.102 GT:AD:DP:GQ:PL 1/1:0,293:293:99:8607,878,0 20 32664864 rs10649600 C CCAG 2735.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.5;MQ=60.38;MQRankSum=0.321;QD=11.17;ReadPosRankSum=-1.278;SOR=0.578 GT:AD:DP:GQ:PL 0/1:136,109:245:99:2773,0,3516 20 32664865 rs78510823 C CAGT 3203.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=2.21;MLEAC=1;MLEAF=0.5;MQ=60.39;MQRankSum=-2.166;QD=13.35;ReadPosRankSum=1.354;SOR=0.865 GT:AD:DP:GQ:PL 0/1:111,129:240:99:3241,0,2883 20 33004906 rs140460146 CT C 295.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.911;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.432;QD=2.76;ReadPosRankSum=-0.627;SOR=0.595 GT:AD:DP:GQ:PL 0/1:80,27:120:99:333,0,1812 20 33334734 rs11484299 T TA 238.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=6.268;MLEAC=1;MLEAF=0.5;MQ=60.27;MQRankSum=0;QD=7.02;ReadPosRankSum=-0.915;SOR=0.193 GT:AD:DP:GQ:PL 0/1:17,17:53:99:276,0,273 20 33337751 rs3787220 T C 7528.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7557,736,0 20 33338325 . T TA 102.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.414;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.02;ReadPosRankSum=-0.526;SOR=0.899 GT:AD:DP:GQ:PL 0/1:83,18:111:99:140,0,1711 20 33470694 rs4911163 C T 4011.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.86;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4040,417,0 20 33507379 . AGTGTGT A,AGT 5258.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DP=248;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.17;QD=41.74;SOR=1.079 GT:AD:DP:GQ:PL 1/2:0,38,88:144:99:5296,2416,2223,1164,0,797 20 33509275 rs3818273 G A 6291.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6320,611,0 20 33533736 rs734111 A C 2996.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.925 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3025,309,0 20 33565480 rs6060137 C T 2378.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.47;SOR=1.385 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2407,207,0 20 33583331 rs2425015 A G 8043.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,259:259:99:8072,776,0 20 33665969 rs139800499 C T 1738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-0.638;SOR=0.75 GT:AD:DP:GQ:PL 0/1:73,73:146:99:1767,0,1773 20 33762489 rs2069948 C T 6099.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.352 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6128,622,0 20 33763951 rs2069952 C T 4065.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=1.393 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4094,405,0 20 33764632 rs9574 C G 7362.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.789 GT:AD:DP:GQ:PL 1/1:0,237:237:99:7391,711,0 20 33834708 rs3764733 G A 2821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=0.256;SOR=0.646 GT:AD:DP:GQ:PL 0/1:123,134:257:99:2850,0,2815 20 33971914 rs4911494 C T 3290.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.168 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3319,330,0 20 34085528 rs117075109 G A 655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.35;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=0;SOR=0.732 GT:AD:DP:GQ:PL 0/1:28,25:53:99:684,0,823 20 34089740 rs114063154 G A 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.97;ReadPosRankSum=1.673;SOR=0.796 GT:AD:DP:GQ:PL 0/1:101,79:180:99:1822,0,2509 20 34240740 rs201181145 A AGGGCCG 4592.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.19;ClippingRankSum=0;DB;DP=306;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.522;QD=17.01;ReadPosRankSum=-0.523;SOR=0.782 GT:AD:DP:GQ:PL 0/1:150,120:270:99:4630,0,8800 20 35414905 rs73109216 G T 3410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=1.056;SOR=0.597 GT:AD:DP:GQ:PL 0/1:156,156:312:99:3439,0,3848 20 35445890 rs368000406 TA T 133.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.35;ReadPosRankSum=1.403;SOR=0.935 GT:AD:DP:GQ:PL 0/1:42,15:69:99:171,0,911 20 35467713 rs1146250 G A 2935.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.639;SOR=0.688 GT:AD:DP:GQ:PL 0/1:114,124:238:99:2964,0,2800 20 35491551 rs6029806 A G 9518.77 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,293:293:99:9547,880,0 20 35695535 rs371434822 GA G 251.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.433;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.216;QD=3.03;ReadPosRankSum=-2.046;SOR=0.628 GT:AD:DP:GQ:PL 0/1:63,20:107:99:289,0,1358 20 35740794 rs1744760 T C 1525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.366;SOR=0.787 GT:AD:DP:GQ:PL 0/1:67,66:133:99:1554,0,1485 20 35748894 rs1624888 C G 895.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.723;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.22;SOR=0.65 GT:AD:DP:GQ:PL 0/1:38,37:75:99:924,0,909 20 35769592 rs1744769 T C 1332.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.554;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.65;ReadPosRankSum=1.096;SOR=0.934 GT:AD:DP:GQ:PL 0/1:95,59:154:99:1361,0,2291 20 35769647 rs1780680 G T 1393.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.157;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.45;ReadPosRankSum=-1.349;SOR=0.503 GT:AD:DP:GQ:PL 0/1:98,67:165:99:1422,0,2241 20 35783494 rs1615246 T C 1480.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-1.243;SOR=0.632 GT:AD:DP:GQ:PL 0/1:63,67:130:99:1509,0,1428 20 35807790 rs57415986 G GCTTACAGACAGGGCCCCGCGGCCGGCACT,GCTTATAGACAGGGCCCCGCGGCCGGCACT 9744.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;QD=48.48;SOR=0.83 GT:AD:DP:GQ:PL 1/2:0,105,96:201:99:9782,3206,2581,3737,0,3199 20 35835657 rs11698281 C T 673.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.111;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.696;SOR=1.179 GT:AD:DP:GQ:PL 0/1:30,26:56:99:702,0,813 20 35865054 rs4608 C T 1239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.691;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.047;SOR=0.627 GT:AD:DP:GQ:PL 0/1:76,57:133:99:1268,0,1752 20 36030939 rs1885257 G C 7039.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.71 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7068,707,0 20 36685915 rs2256288 T C 2035.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.32;SOR=1.646 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2064,195,0 20 36758778 rs2076377 G C 1763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.605;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=0.593;SOR=0.78 GT:AD:DP:GQ:PL 0/1:76,70:146:99:1792,0,1878 20 36769792 rs2076389 G A 968.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.65;ReadPosRankSum=2.22;SOR=0.774 GT:AD:DP:GQ:PL 0/1:63,49:112:99:997,0,1526 20 36770588 rs2076390 C T 2867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.421;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=0.812;SOR=0.665 GT:AD:DP:GQ:PL 0/1:109,118:227:99:2896,0,2471 20 36932660 rs1341023 C T 2577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.313;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=6.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-0.484;SOR=1.024 GT:AD:DP:GQ:PL 0/1:147,120:267:99:2606,0,3253 20 36932676 rs1341024 G C 2727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.398;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=6.632;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-1.535;SOR=0.855 GT:AD:DP:GQ:PL 0/1:141,121:262:99:2756,0,3291 20 36938878 rs5741801 T C 1838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.37;ReadPosRankSum=1.369;SOR=0.666 GT:AD:DP:GQ:PL 0/1:59,69:128:99:1867,0,1641 20 36939052 rs5743507 G C 2435.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=0.095;SOR=0.617 GT:AD:DP:GQ:PL 0/1:105,95:200:99:2464,0,2748 20 36946848 rs4358188 G A 3390.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.98;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3419,349,0 20 36979265 rs2232582 T C 2430.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.026;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=0.55;SOR=0.722 GT:AD:DP:GQ:PL 0/1:84,105:189:99:2459,0,2125 20 36989381 rs2232596 G A 832.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.822;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.86;ReadPosRankSum=-0.171;SOR=1.209 GT:AD:DP:GQ:PL 0/1:58,36:94:99:861,0,1390 20 36997632 rs1780627 T C 787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.607;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.38;ReadPosRankSum=0.795;SOR=0.459 GT:AD:DP:GQ:PL 0/1:50,34:84:99:816,0,1254 20 37001761 rs2232618 T C 1343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=4.628;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=1.151;SOR=0.845 GT:AD:DP:GQ:PL 0/1:52,59:111:99:1372,0,1124 20 37128080 rs16987350 T C 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.269;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=1.112;SOR=0.569 GT:AD:DP:GQ:PL 0/1:51,42:93:99:1095,0,1326 20 37168469 rs6070521 G T 2251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=2.063;SOR=0.878 GT:AD:DP:GQ:PL 0/1:77,96:173:99:2280,0,1725 20 37187110 rs144540357 A AT 829.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.322;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.15;ReadPosRankSum=-0.708;SOR=0.951 GT:AD:DP:GQ:PL 0/1:70,46:132:99:867,0,1381 20 37198582 rs142678293 C T 1670.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.79;ReadPosRankSum=0.482;SOR=0.549 GT:AD:DP:GQ:PL 0/1:45,68:113:99:1699,0,1007 20 37252047 . T C 3002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.36;ClippingRankSum=0;DP=239;ExcessHet=3.0103;FS=2.215;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.65;SOR=0.561 GT:AD:DP:GQ:PL 0/1:116,123:239:99:3031,0,2882 20 37277271 rs220526 C T 3042.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3071,323,0 20 37377139 rs2254105 C T 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.68;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=0.719;SOR=0.643 GT:AD:DP:GQ:PL 0/1:104,91:195:99:2206,0,2857 20 37383640 rs2748663 T C 1995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.613;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.695;SOR=1.091 GT:AD:DP:GQ:PL 0/1:94,81:175:99:2024,0,2175 20 37396120 rs2245231 A G 3890.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.187 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3919,393,0 20 37534665 rs4812332 C T 4279.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4308,434,0 20 37555116 rs3752290 G C 8290.77 PASS AC=2;AF=1;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.03;SOR=1.428 GT:AD:DP:GQ:PL 1/1:0,251:251:99:8319,752,0 20 37570725 rs3752293 C T 3858.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3887,398,0 20 37601243 rs16987712 A G 900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.613;ClippingRankSum=0;DB;DP=71;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=0.197;SOR=0.732 GT:AD:DP:GQ:PL 0/1:29,42:71:99:929,0,716 20 37662835 rs3834993 CT C 994.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0;DB;DP=60;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.58;ReadPosRankSum=0.187;SOR=0.503 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,34:60:99:0|1:37662835_CT_C:1032,0,718 20 37667182 rs3752302 C T 1756.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-1.069;SOR=0.501 GT:AD:DP:GQ:PL 0/1:75,81:156:99:1785,0,1765 20 39797465 rs753381 T C 776.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.676;ClippingRankSum=0;DB;DP=75;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=1.237;SOR=0.744 GT:AD:DP:GQ:PL 0/1:42,33:75:99:805,0,1087 20 39832561 rs140734093 G A 3463.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.298;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.643;SOR=0.729 GT:AD:DP:GQ:PL 0/1:155,139:294:99:3492,0,3876 20 41306488 rs111229158 G GA 3451.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-3.231;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.243;MLEAC=2;MLEAF=1;MQ=60.32;MQRankSum=0.666;QD=23.01;ReadPosRankSum=1.256;SOR=0.297 GT:AD:DP:GQ:PL 1/1:13,137:168:99:3489,180,0 20 41306600 rs2425516 A G 7293.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.23;QD=30.65;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7322,714,0 20 41818289 rs2867655 C G 4687.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4716,494,0 20 42089140 rs34934568 T A 1364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.179;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.33;ReadPosRankSum=1.052;SOR=0.66 GT:AD:DP:GQ:PL 0/1:33,56:89:99:1393,0,716 20 42089511 rs2235611 T C 7444.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.25;QD=31.95;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7473,699,0 20 42194989 rs33969356 T A 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.809;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=1.801;SOR=0.823 GT:AD:DP:GQ:PL 0/1:78,76:154:99:1940,0,1899 20 42196550 rs2067061 T G 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.302;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-0.267;SOR=0.783 GT:AD:DP:GQ:PL 0/1:50,54:104:99:1409,0,1177 20 42199704 rs11467250 GGTGT G 3930.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.299;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=1.42;QD=28.08;ReadPosRankSum=0.02;SOR=0.659 GT:AD:DP:GQ:PL 0/1:45,95:207:99:3968,0,1960 20 42225114 rs2664519 G A 1165.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.595;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=-1.142;SOR=0.8 GT:AD:DP:GQ:PL 0/1:50,53:103:99:1194,0,1095 20 42249479 rs11483104 C CT 766.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.392;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=2.861;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.02;ReadPosRankSum=0.913;SOR=1.022 GT:AD:DP:GQ:PL 0/1:47,38:89:99:804,0,920 20 42310509 rs442143 T C 3955.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.66;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3984,414,0 20 42328639 rs285162 T C 6120.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=0.703 GT:AD:DP:GQ:PL 1/1:0,195:195:99:6149,585,0 20 42694558 rs199841880 C CCCG 6670.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.775;ClippingRankSum=0;DB;DP=410;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.5;MQ=60.18;MQRankSum=2.536;QD=17.98;ReadPosRankSum=-1.002;SOR=0.631 GT:AD:DP:GQ:PL 0/1:176,195:371:99:6708,0,6928 20 42747247 rs3810510 C T 1621.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=2.014;SOR=0.65 GT:AD:DP:GQ:PL 0/1:66,69:135:99:1650,0,1576 20 42939750 rs6073401 T C 8754.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=1.196 GT:AD:DP:GQ:PL 1/1:0,265:265:99:8783,796,0 20 42965841 rs11699901 T G 2956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.214;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=3.102;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=-1.552;SOR=0.511 GT:AD:DP:GQ:PL 0/1:96,115:211:99:2985,0,2270 20 42966025 rs1884612 T C 2903.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.166;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.501;SOR=0.593 GT:AD:DP:GQ:PL 0/1:127,124:251:99:2932,0,2968 20 42973935 rs11697359 T C 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.396;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.15;ReadPosRankSum=-0.302;SOR=0.602 GT:AD:DP:GQ:PL 0/1:74,43:117:99:982,0,1786 20 42979444 rs11699154 G A 1488.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.06;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.79;ReadPosRankSum=-0.648;SOR=0.973 GT:AD:DP:GQ:PL 0/1:85,67:152:99:1517,0,2373 20 43034693 rs745975 C T 1242.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.48;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.308;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=1.302;SOR=0.913 GT:AD:DP:GQ:PL 0/1:68,58:126:99:1271,0,1705 20 43264927 rs394105 C T 2741.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2770,288,0 20 43348735 rs2296530 C A 2639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.24;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.04;ReadPosRankSum=-0.523;SOR=0.531 GT:AD:DP:GQ:PL 0/1:144,119:263:99:2668,0,3844 20 43374839 rs3834659 GC G 2140.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.29;ReadPosRankSum=0.788;SOR=0.758 GT:AD:DP:GQ:PL 0/1:71,69:140:99:2178,0,2213 20 43378770 rs1111032 A G 2265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.533;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.43;ReadPosRankSum=-0.25;SOR=0.758 GT:AD:DP:GQ:PL 0/1:67,90:157:99:2294,0,1593 20 43379264 rs6073538 A C 1699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.856;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=29.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=-0.736;SOR=2.131 GT:AD:DP:GQ:PL 0/1:131,75:206:99:1728,0,3239 20 43379454 rs13042905 T C 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.317;ClippingRankSum=0;DB;DP=177;ExcessHet=3.0103;FS=3.49;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-0.091;SOR=0.464 GT:AD:DP:GQ:PL 0/1:86,91:177:99:2320,0,2193 20 43723627 rs734784 T C 2512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.82;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.76;ReadPosRankSum=1.045;SOR=0.884 GT:AD:DP:GQ:PL 0/1:96,101:197:99:2541,0,2208 20 43727155 rs13043825 C T 2594.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.532;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=0.393;SOR=0.752 GT:AD:DP:GQ:PL 0/1:127,112:239:99:2623,0,3562 20 43752737 rs34841068 G C 1331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.92;ReadPosRankSum=0.656;SOR=0.751 GT:AD:DP:GQ:PL 0/1:70,52:122:99:1360,0,2070 20 43933196 rs2233093 C T 2432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.556;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=4.856;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.259;SOR=0.711 GT:AD:DP:GQ:PL 0/1:100,103:203:99:2461,0,2816 20 43944958 rs2741500 G T 2296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.044;SOR=0.783 GT:AD:DP:GQ:PL 0/1:95,95:190:99:2325,0,2524 20 43964407 rs2072791 G C 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.41;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.61;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.74;ReadPosRankSum=-1.438;SOR=0.76 GT:AD:DP:GQ:PL 0/1:76,74:150:99:1789,0,2037 20 43976991 rs2228384 A G 1891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=-0.02;QD=12.78;ReadPosRankSum=0.497;SOR=0.634 GT:AD:DP:GQ:PL 0/1:73,75:148:99:1920,0,1711 20 44002665 rs2231626 C G 610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.852;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=-0.285;SOR=0.631 GT:AD:DP:GQ:PL 0/1:47,23:70:99:639,0,1433 20 44004155 rs10546815 CATT C 4373.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=1.09;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.3;QD=21.13;ReadPosRankSum=1.924;SOR=0.59 GT:AD:DP:GQ:PL 0/1:94,113:207:99:4411,0,4037 20 44038574 rs1127497 A G 2786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.592;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.909;QD=14.15;ReadPosRankSum=0.491;SOR=0.788 GT:AD:DP:GQ:PL 0/1:88,109:197:99:2815,0,2094 20 44052992 rs13217 G A 2201.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.947;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=8.263;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=1.005;SOR=0.957 GT:AD:DP:GQ:PL 0/1:109,85:194:99:2230,0,2741 20 44054349 rs707577 T C 2169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.292;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.422;SOR=0.605 GT:AD:DP:GQ:PL 0/1:88,81:169:99:2198,0,2233 20 44141331 rs6032259 A G 2055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.121;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.5;MQ=60.06;MQRankSum=-0.943;QD=11.95;ReadPosRankSum=-1.069;SOR=0.846 GT:AD:DP:GQ:PL 0/1:90,82:172:99:2084,0,2206 20 44174423 rs765156 G A 7278.77 PASS AC=2;AF=1;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.12;SOR=1.064 GT:AD:DP:GQ:PL 1/1:0,250:250:99:7307,750,0 20 44180813 rs17348421 G A 1548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.977;SOR=0.908 GT:AD:DP:GQ:PL 0/1:60,65:125:99:1577,0,1377 20 44184375 rs2250860 T C 1922.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.014;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=0.894;SOR=0.532 GT:AD:DP:GQ:PL 0/1:95,77:172:99:1951,0,2323 20 44259549 rs2272961 G A 1458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=0.052;SOR=0.658 GT:AD:DP:GQ:PL 0/1:81,64:145:99:1487,0,2048 20 44314609 rs232729 A G 5037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.209;ClippingRankSum=0;DB;DP=419;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.738;QD=12.02;ReadPosRankSum=-1.818;SOR=0.632 GT:AD:DP:GQ:PL 0/1:210,209:419:99:5066,0,4940 20 44417643 rs6032537 A G 7866.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7895,782,0 20 44417675 rs6032538 G C 7177.77 PASS AC=2;AF=1;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,238:238:99:7206,713,0 20 44418564 rs3746493 A G 3317.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3346,351,0 20 44420637 rs2664539 G A 4375.77 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4404,435,0 20 44420682 rs2664591 T C 6379.77 PASS AC=2;AF=1;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.74;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,201:201:99:6408,603,0 20 44452697 rs4629 C A 7528.77 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,270:270:99:7557,808,0 20 44469290 rs4638862 G A 8959.77 PASS AC=2;AF=1;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.998 GT:AD:DP:GQ:PL 1/1:0,305:305:99:8988,910,0 20 44470676 rs3848713 T C 8477.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8506,819,0 20 44472163 rs55931834 C T 2467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.3;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=1.76;SOR=0.546 GT:AD:DP:GQ:PL 0/1:109,106:215:99:2496,0,2753 20 44505973 rs2903808 T C 6680.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.75;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6709,611,0 20 44506418 rs1045493 G A 7069.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,214:214:99:7098,643,0 20 44519643 rs2868362 G A 3292.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=1.094 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3321,312,0 20 44520237 rs10582052 CCTG C 10860.7 PASS AC=2;AF=1;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.44;QD=43.97;SOR=0.749 GT:AD:DP:GQ:PL 1/1:0,247:257:99:10898,745,0 20 44523442 rs3215446 TC T 4730.73 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=32.18;SOR=1.088 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4768,442,0 20 44523547 rs2075961 G A 7542.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=31.43;SOR=1.247 GT:AD:DP:GQ:PL 1/1:0,240:240:99:7571,718,0 20 44523782 rs4608591 C T 6163.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.076 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6192,617,0 20 44574533 rs11696196 C T 1971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.68;SOR=0.801 GT:AD:DP:GQ:PL 0/1:96,85:181:99:2000,0,2586 20 44578674 rs16990951 T A 2163.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=1.981;SOR=0.606 GT:AD:DP:GQ:PL 0/1:107,94:201:99:2192,0,2854 20 44578961 rs3746503 A G 3086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.889;ClippingRankSum=0;DB;DP=270;ExcessHet=3.0103;FS=4.052;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.73;SOR=0.645 GT:AD:DP:GQ:PL 0/1:143,127:270:99:3115,0,3871 20 44592364 rs3746511 C T 2630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.134;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=0.193;SOR=0.789 GT:AD:DP:GQ:PL 0/1:123,107:230:99:2659,0,3631 20 44592636 rs3746512 C T 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.271;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.176;SOR=0.784 GT:AD:DP:GQ:PL 0/1:83,94:177:99:2415,0,1947 20 44596207 rs6032606 C G 7390.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.7;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,226:226:99:7419,678,0 20 44596545 rs3848719 G A 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.887;ClippingRankSum=0;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=-1.339;SOR=0.701 GT:AD:DP:GQ:PL 0/1:145,133:278:99:3068,0,3891 20 44599839 rs6017715 G C 7647.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7676,732,0 20 44639692 rs2274755 G T 3444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=1.573;SOR=0.714 GT:AD:DP:GQ:PL 0/1:169,145:314:99:3473,0,4495 20 44640225 rs17576 A G 1925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-2.101;SOR=0.686 GT:AD:DP:GQ:PL 0/1:96,82:178:99:1954,0,2526 20 44640959 rs3918256 G A 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.695;SOR=0.712 GT:AD:DP:GQ:PL 0/1:116,107:223:99:2535,0,3002 20 44642406 rs2250889 G C 7536.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,262:262:99:7565,784,0 20 44642833 rs13969 A C 2870.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=-0.965;SOR=0.711 GT:AD:DP:GQ:PL 0/1:136,116:252:99:2899,0,3367 20 44643111 rs17577 G A 1926.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.042;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=4.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.13;ReadPosRankSum=0.892;SOR=0.838 GT:AD:DP:GQ:PL 0/1:122,89:211:99:1955,0,2824 20 44644965 rs13925 G A 1350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.786;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=0.714;SOR=0.696 GT:AD:DP:GQ:PL 0/1:95,60:155:99:1379,0,2247 20 44645010 rs20544 C T 1626.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.083;SOR=0.634 GT:AD:DP:GQ:PL 0/1:54,76:130:99:1655,0,1228 20 44678348 rs6032635 G A 8648.77 PASS AC=2;AF=1;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.46;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,315:315:99:8677,943,0 20 44680424 rs79522550 G T 2876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.196;SOR=0.649 GT:AD:DP:GQ:PL 0/1:112,131:243:99:2905,0,2616 20 44746982 rs1883832 T C 1529.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.956;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=4.247;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.502;SOR=0.669 GT:AD:DP:GQ:PL 0/1:60,64:124:99:1558,0,1294 20 44839203 rs8124843 C G 2313.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.347;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=1.195;SOR=0.625 GT:AD:DP:GQ:PL 0/1:81,91:172:99:2342,0,2022 20 44996182 rs2257495 A G 4243.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=1.246 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4272,410,0 20 45170213 rs847078 A G 2932.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.201;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=4.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.37;ReadPosRankSum=-1.2;SOR=0.962 GT:AD:DP:GQ:PL 0/1:115,122:237:99:2961,0,2660 20 45170249 . C T 3265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0;DP=260;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.634;SOR=0.716 GT:AD:DP:GQ:PL 0/1:125,134:259:99:3294,0,3151 20 45174026 rs202396 A C 2512.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.61;ReadPosRankSum=2.551;SOR=0.685 GT:AD:DP:GQ:PL 0/1:73,99:172:99:2541,0,1683 20 45194904 rs202391 C G 1958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.632;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=0.563;SOR=0.651 GT:AD:DP:GQ:PL 0/1:81,75:156:99:1987,0,1999 20 45204266 rs1880898 G A 1129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.735;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=0.165;SOR=0.556 GT:AD:DP:GQ:PL 0/1:62,50:112:99:1158,0,1446 20 45216784 rs35393013 A T 441.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.84;ReadPosRankSum=1.369;SOR=0.816 GT:AD:DP:GQ:PL 0/1:29,21:50:99:470,0,747 20 45242269 rs2273024 G C 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0.55;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-2.724;SOR=0.613 GT:AD:DP:GQ:PL 0/1:91,89:180:99:2314,0,2493 20 45318042 rs2664523 G A 2386.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.8;ReadPosRankSum=0.828;SOR=0.501 GT:AD:DP:GQ:PL 0/1:74,99:173:99:2415,0,1925 20 45318069 rs2664574 C G 2038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.16;ReadPosRankSum=-0.494;SOR=0.573 GT:AD:DP:GQ:PL 0/1:64,80:144:99:2067,0,1604 20 45358145 rs2425906 T G 995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=4.272;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.38;ReadPosRankSum=1.056;SOR=0.399 GT:AD:DP:GQ:PL 0/1:83,52:135:99:1024,0,2100 20 45717954 rs866937 C T 2153.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.946;SOR=0.859 GT:AD:DP:GQ:PL 0/1:102,102:204:99:2182,0,2301 20 45853037 rs2664544 A G 3312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.484;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=-1.679;SOR=0.801 GT:AD:DP:GQ:PL 0/1:131,118:249:99:3341,0,3255 20 46264888 rs2230782 G C 3216.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=0.884;SOR=0.554 GT:AD:DP:GQ:PL 0/1:100,127:227:99:3245,0,2495 20 46266543 . G GT 297.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0;DP=107;ExcessHet=3.0103;FS=3.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.88;ReadPosRankSum=-1.489;SOR=1.136 GT:AD:DP:GQ:PL 0/1:41,20:92:99:335,0,884 20 46267950 rs4810648 C T 2419.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2448,233,0 20 46279836 rs3092460 ACAG A 3297.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=1.732;QD=17.09;ReadPosRankSum=2.818;SOR=0.714 GT:AD:DP:GQ:PL 0/1:101,92:201:99:3326,0,4187 20 46365571 rs3810526 A G 3709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.263;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.921;SOR=0.734 GT:AD:DP:GQ:PL 0/1:164,155:319:99:3738,0,4267 20 47249189 rs4413212 T C 4629.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.29;SOR=1.393 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4658,405,0 20 47253150 rs2664521 T C 7923.77 PASS AC=2;AF=1;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.894 GT:AD:DP:GQ:PL 1/1:0,271:271:99:7952,813,0 20 47256300 rs6019339 C T 6329.77 PASS AC=2;AF=1;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6358,624,0 20 47258763 rs16993997 C T 3913.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.43;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3942,398,0 20 47260936 rs6019344 A G 4010.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=3.129;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=27.1;ReadPosRankSum=1.259;SOR=0.332 GT:AD:DP:GQ:PL 1/1:1,147:148:99:4039,405,0 20 47261017 rs6066802 T C 4145.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.2;SOR=0.915 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4174,440,0 20 47267480 rs41283556 A G 7510.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,255:255:99:7539,765,0 20 47267940 rs61748372 G A 7625.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7654,771,0 20 47269233 rs41283558 C G 6448.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,206:206:99:6477,618,0 20 47273726 rs55904123 C T 5834.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.272 GT:AD:DP:GQ:PL 1/1:0,188:188:99:5863,563,0 20 47342814 rs12480096 G A 2240.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2269,225,0 20 47558417 rs73113975 C T 2161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.64;SOR=0.668 GT:AD:DP:GQ:PL 0/1:88,93:181:99:2190,0,2047 20 47604825 rs4810905 G A 2844.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=1.469 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2873,290,0 20 47682893 rs2246266 C T 3853.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3882,386,0 20 47770461 rs2273652 A C 3888.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=44.19;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,88:90:99:3917,324,0 20 47850182 rs238148 C T 2962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0;DB;DP=256;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.112;SOR=0.653 GT:AD:DP:GQ:PL 0/1:121,134:255:99:2991,0,2984 20 47865372 rs238208 G A 6605.77 PASS AC=2;AF=1;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6634,662,0 20 47865509 rs238209 G A 2848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.944;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=4.546;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.613;SOR=0.895 GT:AD:DP:GQ:PL 0/1:109,117:226:99:2877,0,2849 20 47872327 rs238220 A G 1475.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.446;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=3.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.93;ReadPosRankSum=1.142;SOR=0.978 GT:AD:DP:GQ:PL 0/1:72,63:135:99:1504,0,1722 20 47872377 rs238221 C G 2194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.394;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.553;SOR=0.567 GT:AD:DP:GQ:PL 0/1:78,89:167:99:2223,0,2153 20 47886684 rs57950 G A 5025.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.22;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5054,483,0 20 47887731 rs374562383 A G 2258.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-0.048;SOR=0.57 GT:AD:DP:GQ:PL 0/1:82,99:181:99:2287,0,2019 20 48140682 rs5628 C T 3056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=4.387;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.095;SOR=0.475 GT:AD:DP:GQ:PL 0/1:109,132:241:99:3085,0,2536 20 48184654 . C CGCGGGGCTGGCGGGGCTG 1197.73 PASS AC=2;AF=1;AN=2;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.78;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,28:29:56:1235,56,0 20 48257149 rs421801 C T 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.095;SOR=0.587 GT:AD:DP:GQ:PL 0/1:85,97:182:99:2209,0,1933 20 48260203 rs6122802 G A 902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=5.261;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.4;ReadPosRankSum=0.409;SOR=1.284 GT:AD:DP:GQ:PL 0/1:52,44:96:99:931,0,1310 20 48491258 rs542234 T G 2475.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.58;SOR=1.704 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2504,228,0 20 48522330 rs495337 G A 2584.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.226;SOR=0.681 GT:AD:DP:GQ:PL 0/1:137,117:254:99:2613,0,3444 20 48522585 rs492702 G A 3902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=8.069;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.65;ReadPosRankSum=0.713;SOR=0.666 GT:AD:DP:GQ:PL 0/1:171,164:335:99:3931,0,4046 20 48524827 rs2769982 A G 2854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.082;SOR=0.693 GT:AD:DP:GQ:PL 0/1:117,125:242:99:2883,0,2686 20 48562797 rs34310744 C CT 341.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.34;MQRankSum=0.967;QD=7.59;ReadPosRankSum=0.534;SOR=0.657 GT:AD:DP:GQ:PL 0/1:26,19:56:99:379,0,474 20 48729677 rs126907 C G 3348.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=2.459 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3377,327,0 20 48746189 rs6122878 C T 10002.8 PASS AC=2;AF=1;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,340:340:99:10031,1017,0 20 48770159 rs232733 T C 12514.8 PASS AC=2;AF=1;AN=2;DB;DP=405;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.9;SOR=1.162 GT:AD:DP:GQ:PL 1/1:0,405:405:99:12543,1214,0 20 48808011 rs4253439 C T 3253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.116;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.013;SOR=0.72 GT:AD:DP:GQ:PL 0/1:135,129:264:99:3282,0,3612 20 49214156 rs6020624 A G 2861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.15;ReadPosRankSum=1.171;SOR=0.726 GT:AD:DP:GQ:PL 0/1:148,134:282:99:2890,0,3336 20 49551780 rs11483542 T TA 322.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.685;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.17;ReadPosRankSum=-0.577;SOR=0.963 GT:AD:DP:GQ:PL 0/1:28,17:58:99:360,0,547 20 49620783 rs1054268 G T 2891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=0.273;SOR=0.8 GT:AD:DP:GQ:PL 0/1:108,114:222:99:2920,0,2834 20 49621149 rs6122993 T C 3944.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-1.217;SOR=0.696 GT:AD:DP:GQ:PL 0/1:154,163:317:99:3973,0,3843 20 50092027 rs6013193 T G 2829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.75;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-0.53;SOR=0.576 GT:AD:DP:GQ:PL 0/1:102,116:218:99:2858,0,2345 20 50140629 rs140836558 C G 2808.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.448;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=1.875;SOR=0.558 GT:AD:DP:GQ:PL 0/1:92,100:192:99:2837,0,2407 20 50241714 rs2235859 C A 3813.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.78;SOR=1.649 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3842,360,0 20 50287790 rs2255342 A G 5561.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.083 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5590,554,0 20 50408482 rs6013281 A G 7774.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7803,766,0 20 50713992 rs11309611 AT A 441.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.5;MQ=60.3;MQRankSum=0.858;QD=11.94;ReadPosRankSum=0.158;SOR=0.368 GT:AD:DP:GQ:PL 0/1:16,21:63:99:479,0,221 20 50768672 rs3838014 GT G 2282.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.5;MQ=60.29;MQRankSum=2.537;QD=10.24;ReadPosRankSum=-2.085;SOR=0.524 GT:AD:DP:GQ:PL 0/1:114,109:223:99:2320,0,2712 20 50803444 rs36027430 C T 3193.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.152;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.13;ReadPosRankSum=0.055;SOR=0.706 GT:AD:DP:GQ:PL 0/1:142,145:287:99:3222,0,3131 20 50803573 rs34351592 G A 1359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.06;ReadPosRankSum=0.554;SOR=0.657 GT:AD:DP:GQ:PL 0/1:61,62:123:99:1388,0,1569 20 51870849 rs739870 T C 3211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.264;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.295;SOR=0.75 GT:AD:DP:GQ:PL 0/1:130,133:263:99:3240,0,3133 20 52573971 rs35575210 T G 1285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=1.019;SOR=0.647 GT:AD:DP:GQ:PL 0/1:60,60:120:99:1314,0,1447 20 52583537 rs139595442 C T 1931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=4.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.468;SOR=0.594 GT:AD:DP:GQ:PL 0/1:73,88:161:99:1960,0,1606 20 52611540 rs208381 C A 763.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=0.816;SOR=0.473 GT:AD:DP:GQ:PL 0/1:55,41:96:99:792,0,1359 20 52674615 rs465184 A G 2198.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.81;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2227,244,0 20 52675188 rs394732 G T 229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.958;ClippingRankSum=0;DB;DP=33;ExcessHet=3.0103;FS=15.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.18;ReadPosRankSum=-2.279;SOR=1.218 GT:AD:DP:GQ:PL 0/1:20,12:32:99:258,0,460 20 52675259 rs2020975 G T 357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.63;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=7.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=1.957;SOR=0.112 GT:AD:DP:GQ:PL 0/1:19,19:38:99:386,0,537 20 52775528 rs2296239 C T 444.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=6.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.409;SOR=0.733 GT:AD:DP:GQ:PL 0/1:24,21:45:99:473,0,571 20 52786219 rs2296241 G A 1921.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.26;SOR=1.263 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1950,204,0 20 54961463 rs1047972 T C 3167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.18;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=59.93;MQRankSum=-0.849;QD=14.94;ReadPosRankSum=-0.189;SOR=0.748 GT:AD:DP:GQ:PL 0/1:90,122:212:99:3196,0,2237 20 54974424 rs2426617 C A 2890.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.11;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2919,288,0 20 55012318 rs911159 G A 2009.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.419;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.78;ReadPosRankSum=0.549;SOR=0.67 GT:AD:DP:GQ:PL 0/1:135,94:229:99:2038,0,3766 20 55070268 rs34552628 A T 538.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.91;ReadPosRankSum=1.016;SOR=0.616 GT:AD:DP:GQ:PL 0/1:48,30:78:99:567,0,1094 20 55072472 rs6024911 A G 1146.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.938;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.08;ReadPosRankSum=-2.272;SOR=0.692 GT:AD:DP:GQ:PL 0/1:89,53:142:99:1175,0,2162 20 55088404 rs1059768 A G 1897.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.567;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.57;ReadPosRankSum=-2.474;SOR=1.029 GT:AD:DP:GQ:PL 0/1:77,74:151:99:1926,0,1768 20 55108617 rs3209183 C A 2830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.648;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=58.94;MQRankSum=-0.359;QD=10.22;ReadPosRankSum=-0.986;SOR=0.736 GT:AD:DP:GQ:PL 0/1:156,121:277:99:2859,0,3834 20 55111371 rs2296130 G A 2289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.09;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.87;ReadPosRankSum=-1.194;SOR=0.761 GT:AD:DP:GQ:PL 0/1:62,92:154:99:2318,0,1643 20 56098733 rs6025606 T C 1817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.133;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=3.745;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-1.381;SOR=0.457 GT:AD:DP:GQ:PL 0/1:79,76:155:99:1846,0,1823 20 56099114 rs6070128 C G 3709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.905;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.43;ReadPosRankSum=-0.395;SOR=0.64 GT:AD:DP:GQ:PL 0/1:113,144:257:99:3738,0,2579 20 56136536 rs1042521 A G 1583.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.554;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.42;ReadPosRankSum=0.056;SOR=0.752 GT:AD:DP:GQ:PL 0/1:57,61:118:99:1612,0,1211 20 56137798 rs1062600 G A 3362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.89;ReadPosRankSum=1.456;SOR=0.754 GT:AD:DP:GQ:PGT:PID:PL 0/1:91,87:178:99:0|1:56137798_G_A:3391,0,3793 20 56137807 rs1042523 A G 3398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.18;ReadPosRankSum=0.51;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,90:187:99:0|1:56137798_G_A:3427,0,3949 20 56137834 rs1062601 A G 1979.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.2;ReadPosRankSum=0.123;SOR=0.633 GT:AD:DP:GQ:PL 0/1:102,92:194:99:2008,0,2340 20 56137895 rs707555 G C 1855.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.448;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-1.755;SOR=0.854 GT:AD:DP:GQ:PL 0/1:78,67:145:99:1884,0,1931 20 56138621 rs8192708 A G 605.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=0.898;SOR=0.61 GT:AD:DP:GQ:PL 0/1:41,27:68:99:634,0,1095 20 56186884 rs2865394 T C 9910.77 PASS AC=2;AF=1;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,348:348:99:9939,1043,0 20 56190634 rs2073145 C T 923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=1.105;SOR=0.737 GT:AD:DP:GQ:PL 0/1:40,45:85:99:952,0,954 20 56227121 rs61744856 T C 1862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.436;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.984;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.67;ReadPosRankSum=1.437;SOR=0.997 GT:AD:DP:GQ:PL 0/1:76,71:147:99:1891,0,1839 20 56227514 rs6025698 T C 2891.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=5.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-0.148;SOR=0.969 GT:AD:DP:GQ:PL 0/1:121,124:245:99:2920,0,4539 20 56227532 rs6025699 T C 2984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.939;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=6.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=0.726;SOR=0.958 GT:AD:DP:GQ:PL 0/1:138,125:263:99:3013,0,5022 20 56227589 rs41314918 C G 3039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.7;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.75;ReadPosRankSum=0.025;SOR=0.525 GT:AD:DP:GQ:PL 0/1:100,121:221:99:3068,0,2729 20 56227673 rs73302914 G A 1741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=0.937;SOR=1.044 GT:AD:DP:GQ:PL 0/1:62,66:128:99:1770,0,1622 20 56228151 rs6070204 G A 701.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.094;SOR=0.951 GT:AD:DP:GQ:PL 0/1:38,29:67:99:730,0,1034 20 56726107 rs6070358 C T 2469.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.218 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2498,261,0 20 56793546 rs583987 A G 4601.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4630,446,0 20 56793706 rs584855 G A 4109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=0.037;SOR=0.647 GT:AD:DP:GQ:PL 0/1:166,177:343:99:4138,0,3940 20 56793764 rs1192511 G A 3648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0;DB;DP=349;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.55;ReadPosRankSum=-1.072;SOR=0.611 GT:AD:DP:GQ:PL 0/1:177,169:346:99:3677,0,4012 20 57045667 rs1980576 T C 3053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.61;ReadPosRankSum=-1.004;SOR=0.8 GT:AD:DP:GQ:PL 0/1:137,126:263:99:3082,0,3320 20 57045765 rs3946003 A G 3663.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=-1.441;SOR=0.715 GT:AD:DP:GQ:PL 0/1:155,163:318:99:3692,0,3642 20 57244493 rs2296524 G A 2473.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.348;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=-0.569;SOR=0.634 GT:AD:DP:GQ:PL 0/1:110,117:227:99:2502,0,2799 20 57267942 rs6092682 T C 906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.165;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=2.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=0.293;SOR=1.108 GT:AD:DP:GQ:PL 0/1:57,38:95:99:935,0,1179 20 57268867 rs3746396 C A 3482.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.838;ClippingRankSum=0;DB;DP=281;ExcessHet=3.0103;FS=3.971;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=2.808;SOR=0.941 GT:AD:DP:GQ:PL 0/1:134,147:281:99:3511,0,3070 20 57268994 rs6100166 G C 2182.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.559;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-1.017;SOR=0.706 GT:AD:DP:GQ:PL 0/1:96,89:185:99:2211,0,2347 20 57290347 rs6026468 C G 2308.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.26;ReadPosRankSum=-2.891;SOR=0.53 GT:AD:DP:GQ:PL 0/1:118,107:225:99:2337,0,2842 20 57556295 rs151333 C T 602.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.46;ReadPosRankSum=-1.598;SOR=0.468 GT:AD:DP:GQ:PL 0/1:14,25:39:99:631,0,328 20 57564070 rs2273360 C T 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.982;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=1.633;SOR=0.684 GT:AD:DP:GQ:PL 0/1:54,44:98:99:1010,0,1234 20 57571763 rs9760 A G 1715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.51;ReadPosRankSum=0.089;SOR=0.497 GT:AD:DP:GQ:PL 0/1:52,75:127:99:1744,0,1130 20 57572675 rs163785 A G 5565.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5594,578,0 20 57597970 rs463312 A C 3278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.76;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.06;ReadPosRankSum=1.082;SOR=0.63 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,85:172:99:0|1:57597970_A_C:3307,0,4382 20 57597971 rs415064 G C 3278.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.06;ReadPosRankSum=1.095;SOR=0.63 GT:AD:DP:GQ:PGT:PID:PL 0/1:87,85:172:99:0|1:57597970_A_C:3307,0,4382 20 57599016 rs163777 T G 8085.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.3;SOR=0.708 GT:AD:DP:GQ:PL 1/1:0,276:276:99:8114,827,0 20 57613704 rs199760980 CAA C,CA 1426.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.679;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=13.99;ReadPosRankSum=2.648;SOR=0.81 GT:AD:DP:GQ:PL 1/2:19,25,58:124:99:1464,633,1190,200,0,330 20 57829301 rs259956 T C 6491.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6520,651,0 20 58497481 . TA T 56.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.605;ClippingRankSum=0;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.77;ReadPosRankSum=1.72;SOR=0.776 GT:AD:DP:GQ:PL 0/1:25,7:36:94:94,0,512 20 60485627 rs2427240 C T 4231.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.965 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4260,416,0 20 60503350 rs6142884 A G 6997.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7026,692,0 20 60639883 rs1886009 T C 832.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.03;SOR=2.303 GT:AD:DP:GQ:PL 1/1:0,26:26:78:861,78,0 20 60640305 rs200508203 TGCCAGG T 1311.73 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=64.3;QD=36.44;SOR=2.712 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1349,110,0 20 60640461 rs113875178 A C 71.03 PASS AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=17.76;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,4:4:12:99,12,0 20 60713311 rs7076 G A 4650.77 PASS AC=2;AF=1;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.71;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4679,485,0 20 60713332 rs1135961 A G 4933.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.84;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4962,480,0 20 60738620 rs6089674 C T 3402.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.666;ClippingRankSum=0;DB;DP=333;ExcessHet=3.0103;FS=0.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.373;SOR=0.638 GT:AD:DP:GQ:PL 0/1:177,155:332:99:3431,0,4610 20 60768615 rs6062133 G A 7739.77 PASS AC=2;AF=1;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.56;SOR=0.701 GT:AD:DP:GQ:PL 1/1:0,271:271:99:7768,812,0 20 60848348 rs2236526 C T 981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.12;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=-0.423;SOR=0.83 GT:AD:DP:GQ:PL 0/1:56,45:101:99:1010,0,1333 20 60861782 rs2297592 A G 1531.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.057;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.691;SOR=0.743 GT:AD:DP:GQ:PL 0/1:69,61:130:99:1560,0,1863 20 60864390 rs3746657 C T 1780.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.069;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=-3.255;SOR=0.698 GT:AD:DP:GQ:PL 0/1:101,81:182:99:1809,0,2377 20 60881330 rs2427273 G A 6305.77 PASS AC=2;AF=1;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.03;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,225:225:99:6334,672,0 20 60881780 rs2427275 T C 3221.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.9;SOR=0.93 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3250,302,0 20 60882888 rs2427278 A G 8533.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.47;SOR=1.13 GT:AD:DP:GQ:PL 1/1:0,255:255:99:8562,766,0 20 60885142 rs2379129 C A 2270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.021;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=9.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=-1.811;SOR=0.897 GT:AD:DP:GQ:PL 0/1:119,98:217:99:2299,0,2994 20 60886611 rs2297590 C T 3227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.094;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.174;SOR=0.793 GT:AD:DP:GQ:PL 0/1:184,140:324:99:3256,0,4549 20 60887581 rs944895 G A 3467.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.84;ReadPosRankSum=-1.558;SOR=0.801 GT:AD:DP:GQ:PL 0/1:152,141:293:99:3496,0,3834 20 60892526 rs2427281 A G 4826.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4855,462,0 20 60893506 rs113604626 T G 1200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.829;SOR=0.974 GT:AD:DP:GQ:PL 0/1:71,54:125:99:1229,0,1700 20 60894870 rs73149117 C T 1127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.26;ReadPosRankSum=0.523;SOR=0.608 GT:AD:DP:GQ:PL 0/1:42,50:92:99:1156,0,1109 20 60895738 rs6089346 A G 6842.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.817 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6871,663,0 20 60897071 rs2274936 A G 3915.77 PASS AC=2;AF=1;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.91;SOR=1.69 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3944,357,0 20 60897487 rs2274934 C T 6316.77 PASS AC=2;AF=1;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.296 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6345,632,0 20 60898505 rs2379128 C T 3690.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=1.629 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3719,364,0 20 60899206 rs2427283 C T 2123.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.021;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=4.911;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.549;SOR=0.87 GT:AD:DP:GQ:PL 0/1:113,90:203:99:2152,0,2720 20 60900481 rs2427284 A G 4881.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.5;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4910,465,0 20 60900579 rs2427285 C A 3357.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.68;SOR=1.544 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3386,318,0 20 60901932 rs45496002 C T 1211.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.386;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.76;ReadPosRankSum=-1.217;SOR=0.988 GT:AD:DP:GQ:PL 0/1:51,52:103:99:1240,0,1480 20 60901986 rs875379 G A 1041.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.829;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.2;ReadPosRankSum=1.152;SOR=0.593 GT:AD:DP:GQ:PL 0/1:48,45:93:99:1070,0,1379 20 60902389 rs944893 G A 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.129;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-0.805;SOR=0.763 GT:AD:DP:GQ:PL 0/1:108,87:195:99:2123,0,2742 20 60904853 rs2427286 T C 7749.77 PASS AC=2;AF=1;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,251:251:99:7778,753,0 20 60905878 rs3810548 A G 9994.77 PASS AC=2;AF=1;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.871 GT:AD:DP:GQ:PL 1/1:0,340:340:99:10023,1019,0 20 60907446 rs2151513 T C 3917.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.11;SOR=1.304 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3946,366,0 20 60907675 rs6142734 G A 6631.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.14;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6660,639,0 20 60908964 rs13044266 G A 5338.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.02;QD=46.42;SOR=1.672 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,115:115:99:1|1:60908964_G_A:5367,367,0 20 60908969 rs13042941 T C 5402.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.95;QD=43.92;SOR=1.59 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,123:123:99:1|1:60908964_G_A:5431,373,0 20 60909060 rs13038331 A G 5945.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.8;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5974,561,0 20 60912683 rs2427289 T C 7518.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.943 GT:AD:DP:GQ:PL 1/1:0,257:257:99:7547,770,0 20 60920887 rs11204472 G A 2792.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.937;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.21;ReadPosRankSum=-0.602;SOR=0.892 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2821,247,0 20 60921643 rs4925229 T C 6740.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,213:213:99:6769,639,0 20 60927349 rs483876 C T 5954.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5983,610,0 20 60927412 rs624313 G A 4506.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=1.39 GT:AD:DP:GQ:PL 1/1:0,154:154:99:4535,460,0 20 60937597 rs477859 A G 3925.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.18;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3954,366,0 20 60962943 rs1043008 T C 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.38;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.78;ReadPosRankSum=0.746;SOR=0.731 GT:AD:DP:GQ:PL 0/1:65,55:120:99:1202,0,1597 20 60966318 rs6089219 G T 5670.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5699,595,0 20 60966374 rs13042761 G C 2515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.25;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.022;SOR=0.542 GT:AD:DP:GQ:PL 0/1:118,110:228:99:2544,0,3033 20 61162267 rs6062251 T C 4460.77 PASS AC=2;AF=1;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.2;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4489,491,0 20 61167632 rs11483745 G GT,GTTT 1518.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=5.022;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=30.37;ReadPosRankSum=0.976;SOR=0.151 GT:AD:DP:GQ:PL 1/2:5,24,21:68:99:1556,793,735,530,0,722 20 61167883 rs6143064 G A 1198.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=4.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-0.981;SOR=1.124 GT:AD:DP:GQ:PL 0/1:77,56:133:99:1227,0,1923 20 61292536 rs59460798 C T 799.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.25;ReadPosRankSum=1.122;SOR=0.702 GT:AD:DP:GQ:PL 0/1:58,39:97:99:828,0,1434 20 61303264 rs118129127 C T 3091.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=4.96;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.24;SOR=0.708 GT:AD:DP:GQ:PL 0/1:127,130:257:99:3120,0,3089 20 61340558 rs6090405 C T 1726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.87;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=-0.493;SOR=0.877 GT:AD:DP:GQ:PL 0/1:85,72:157:99:1755,0,2189 20 61444785 rs28368556 G A 3049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.475;ClippingRankSum=0;DB;DP=429;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.5;MQ=51.96;MQRankSum=1.297;QD=7.19;ReadPosRankSum=1.484;SOR=0.539 GT:AD:DP:GQ:PL 0/1:270,154:424:99:3078,0,6482 20 61467898 rs910152 G C 1040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.53;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=3.631;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=-0.191;SOR=1.051 GT:AD:DP:GQ:PL 0/1:68,41:109:99:1069,0,1792 20 61468571 rs2294995 T C 3006.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=0.456;SOR=0.799 GT:AD:DP:GQ:PL 0/1:124,129:253:99:3035,0,2975 20 61488785 rs2294996 T C 2497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.702;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=-2.75;SOR=0.719 GT:AD:DP:GQ:PL 0/1:132,103:235:99:2526,0,3037 20 61492362 rs187984232 C A 2759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.22;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=0.452;SOR=0.769 GT:AD:DP:GQ:PL 0/1:84,115:199:99:2788,0,1643 20 61511626 rs41282982 C T 2718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.55;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.177;SOR=0.645 GT:AD:DP:GQ:PL 0/1:131,114:245:99:2747,0,3529 20 61512606 rs910148 T C 10983.8 PASS AC=2;AF=1;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,344:344:99:11012,1031,0 20 61536895 rs141168250 C T 2566.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.235;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.56;ReadPosRankSum=0.979;SOR=0.734 GT:AD:DP:GQ:PL 0/1:116,106:222:99:2595,0,2660 20 61588159 rs2245341 A G 3478.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=4.077;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.7;ReadPosRankSum=-0.211;SOR=0.5 GT:AD:DP:GQ:PL 0/1:123,151:274:99:3507,0,2782 20 61594679 rs2427463 A G 5511.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5540,546,0 20 61595636 rs2248900 C T 1388.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.606;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=2.471;SOR=0.64 GT:AD:DP:GQ:PL 0/1:86,63:149:99:1417,0,2039 20 61597946 rs5842409 CT C 8458.73 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.05;QD=37.26;SOR=0.958 GT:AD:DP:GQ:PL 1/1:0,227:227:99:8496,683,0 20 61834695 rs6122103 G A 3831.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.546;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=6.66;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=0.242;SOR=0.625 GT:AD:DP:GQ:PL 0/1:160,155:315:99:3860,0,4005 20 61870605 rs3215649 T TG 2937.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.35;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=6.003;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.76;ReadPosRankSum=0.142;SOR=0.408 GT:AD:DP:GQ:PL 0/1:94,105:199:99:2975,0,2622 20 61870727 rs1077019 G C 3854.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.557;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.463;QD=12.56;ReadPosRankSum=-0.721;SOR=0.794 GT:AD:DP:GQ:PL 0/1:158,149:307:99:3883,0,4150 20 61878950 rs872808 A C 2446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=5.123;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.025;SOR=0.666 GT:AD:DP:GQ:PL 0/1:101,84:185:99:2475,0,2488 20 61879009 rs2236194 G T 2708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.325;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=1.146;SOR=0.67 GT:AD:DP:GQ:PL 0/1:104,113:217:99:2737,0,2901 20 61879074 rs11906010 C T 2223.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.583;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.879;SOR=0.688 GT:AD:DP:GQ:PL 0/1:97,101:198:99:2252,0,2443 20 61880169 rs1129659 T G 887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.091;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=0.255;SOR=0.456 GT:AD:DP:GQ:PL 0/1:42,38:80:99:916,0,962 20 61881296 rs927081 A G 5732.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.029 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5761,570,0 20 61912715 rs2236195 T C 3883.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.969;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=24.43;ReadPosRankSum=0.989;SOR=0.786 GT:AD:DP:GQ:PL 1/1:4,155:159:99:3912,321,0 20 61916286 rs73153583 C A 1981.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.04;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.22;ReadPosRankSum=0.899;SOR=0.574 GT:AD:DP:GQ:PL 0/1:107,87:194:99:2010,0,2878 20 61941279 rs6010896 G A 2073.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.445;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=0.666;SOR=0.542 GT:AD:DP:GQ:PL 0/1:93,81:174:99:2102,0,2373 20 61941747 rs4809287 A G 5324.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5353,537,0 20 61943916 rs3833299 GC G 2267.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.43;ReadPosRankSum=0.136;SOR=0.475 GT:AD:DP:GQ:PL 0/1:79,68:147:99:2305,0,2746 20 61944193 rs4809530 T C 1551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.263;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=7.007;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.82;ReadPosRankSum=-0.583;SOR=0.949 GT:AD:DP:GQ:PL 0/1:92,66:158:99:1580,0,2265 20 61945411 rs75513393 T C 2056.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.874;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.18;ReadPosRankSum=-1.238;SOR=0.796 GT:AD:DP:GQ:PL 0/1:77,79:156:99:2085,0,1819 20 61945439 rs147670144 G C 1811.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.306;ClippingRankSum=0;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.135;SOR=0.697 GT:AD:DP:GQ:PL 0/1:75,71:146:99:1840,0,1782 20 61951489 rs6089881 G C 6095.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=1.092 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6124,579,0 20 61980991 rs3827020 T C 2548.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.87;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.774;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.91;ReadPosRankSum=-1.627;SOR=0.562 GT:AD:DP:GQ:PL 0/1:115,99:214:99:2577,0,2960 20 61981536 rs2229960 A G 10067.8 PASS AC=2;AF=1;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.705 GT:AD:DP:GQ:PL 1/1:0,324:324:99:10096,972,0 20 61981554 rs2229959 C A 9679.77 PASS AC=2;AF=1;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,312:312:99:9708,936,0 20 61982085 rs1044394 A G 7876.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=31.63;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,249:249:99:7905,747,0 20 61982124 rs1044393 A G 7915.77 PASS AC=2;AF=1;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,259:259:99:7944,777,0 20 61986949 rs2273500 T C 2880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.348;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.86;ReadPosRankSum=-1.936;SOR=0.424 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,74:126:99:0|1:61986949_T_C:2909,0,2734 20 61986950 rs4809543 G A 2880.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.861;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=23.05;ReadPosRankSum=-1.678;SOR=0.445 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,73:125:99:0|1:61986949_T_C:2909,0,2734 20 62038277 rs1801475 T G 3468.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.594;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.676;SOR=0.76 GT:AD:DP:GQ:PL 0/1:151,137:288:99:3497,0,3331 20 62046496 rs3054432 C CGACAGACA 3803.73 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.58;QD=43.22;SOR=2.584 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3841,264,0 20 62070966 rs2297385 G A 993.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.734;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.256;SOR=0.653 GT:AD:DP:GQ:PL 0/1:47,42:89:99:1022,0,1062 20 62126185 rs310617 A G 11062.8 PASS AC=2;AF=1;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,364:364:99:11091,1091,0 20 62191321 rs3810477 A G 1802.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.048;SOR=0.863 GT:AD:DP:GQ:PL 0/1:99,82:181:99:1831,0,2386 20 62193414 rs310629 A G 7021.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,228:228:99:7050,684,0 20 62194030 rs3810483 G C 2474.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.186;SOR=0.651 GT:AD:DP:GQ:PL 0/1:113,106:219:99:2503,0,2981 20 62194103 rs3810484 A G 3793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.398;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=3.812;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.48;ReadPosRankSum=-1.399;SOR=0.589 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,111:217:99:0|1:62194103_A_G:3822,0,4498 20 62194128 rs3810485 G A 3644.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.51;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.8;ReadPosRankSum=-0.046;SOR=0.774 GT:AD:DP:GQ:PGT:PID:PL 0/1:114,103:217:99:0|1:62194103_A_G:3673,0,4725 20 62195087 rs310630 A G 3004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0.48;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-0.487;SOR=0.76 GT:AD:DP:GQ:PL 0/1:110,122:232:99:3033,0,2710 20 62196253 rs310631 C A 1950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.309;SOR=0.781 GT:AD:DP:GQ:PL 0/1:123,86:209:99:1979,0,3164 20 62196807 rs310632 T C 8650.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8679,875,0 20 62196884 rs310633 A G 7329.77 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.04;SOR=0.888 GT:AD:DP:GQ:PL 1/1:0,244:244:99:7358,732,0 20 62198236 rs415304 G A 6936.77 PASS AC=2;AF=1;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.806 GT:AD:DP:GQ:PL 1/1:0,241:241:99:6965,722,0 20 62198348 rs438363 C T 6317.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,211:211:99:6346,630,0 20 62198662 rs367440 A G 8179.77 PASS AC=2;AF=1;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.83;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,257:257:99:8208,772,0 20 62200575 rs1741594 T C 8529.77 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,266:266:99:8558,798,0 20 62200860 rs1757752 A G 7606.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.12;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.19;ReadPosRankSum=1.2;SOR=0.793 GT:AD:DP:GQ:PL 1/1:2,250:252:99:7635,666,0 20 62202240 rs402211 A G 2562.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.88;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2591,249,0 20 62221610 rs311496 T C 5869.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.35;SOR=0.89 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5898,528,0 20 62223371 rs311494 A G 3348.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.91;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3377,360,0 20 62227081 rs311489 A G 3126.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.95;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3155,324,0 20 62236148 rs6090471 T C 2414.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.76;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2443,260,0 20 62305274 rs2297437 G A 1066.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.051;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.12;ReadPosRankSum=-1.628;SOR=0.943 GT:AD:DP:GQ:PL 0/1:47,41:88:99:1095,0,1199 20 62309554 rs41309367 C T 4803.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.924 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4832,483,0 20 62320968 rs6062302 T C 6013.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6042,597,0 20 62321655 rs2236506 G A 8401.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,284:284:99:8430,855,0 20 62322288 rs3208007 T C 5838.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,190:190:99:5867,570,0 20 62324290 rs61736615 G A 2396.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.33;ReadPosRankSum=-0.574;SOR=0.731 GT:AD:DP:GQ:PL 0/1:148,109:257:99:2425,0,3676 20 62326110 rs3208008 A C 5388.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.08;SOR=1.145 GT:AD:DP:GQ:PL 1/1:0,168:168:99:5417,504,0 20 62328375 rs2738787 A G 12134.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=3.251;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.19;ReadPosRankSum=-0.666;SOR=0.408 GT:AD:DP:GQ:PL 1/1:1,388:389:99:12163,1129,0 20 62340115 rs1291212 C G 8589.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8618,803,0 20 62369426 rs150938918 C CGGGGCG 2571.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.87;ClippingRankSum=0;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.93;MQRankSum=0.525;QD=28.26;ReadPosRankSum=-0.271;SOR=0.965 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2609,219,0 20 62372706 rs4809221 G A 3349.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=1.35 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3378,333,0 20 62372813 rs2427536 G A 5026.77 PASS AC=2;AF=1;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5055,533,0 20 62373707 rs8957 G T 6567.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.21;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6596,577,0 20 62374219 rs1151626 A C 6287.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6316,609,0 20 62378349 rs5019252 C T 4451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0;DB;DP=434;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.28;ReadPosRankSum=0.95;SOR=0.549 GT:AD:DP:GQ:PL 0/1:232,201:433:99:4480,0,5773 20 62378364 rs12625387 C T 4674.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0;DB;DP=406;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.091;SOR=0.69 GT:AD:DP:GQ:PL 0/1:211,194:405:99:4703,0,5278 20 62378665 . AGGGCAGGGGGTGAGCAGGGCCTGGTGGGTTGGGGGGCG A 1400.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.599;ClippingRankSum=0;DP=134;ExcessHet=3.0103;FS=9.297;MLEAC=1;MLEAF=0.5;MQ=61.44;MQRankSum=4.282;QD=21.55;ReadPosRankSum=1.519;SOR=1.843 GT:AD:DP:GQ:PL 0/1:29,36:65:99:1438,0,1504 20 62560898 rs2295436 C T 1750.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=59.79;MQRankSum=1.401;QD=11.01;ReadPosRankSum=0.608;SOR=0.787 GT:AD:DP:GQ:PGT:PID:PL 0/1:81,78:159:99:0|1:62560898_C_T:1779,0,2486 20 62562194 rs78457562 C T 2736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.486;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.11;ReadPosRankSum=0.515;SOR=0.897 GT:AD:DP:GQ:PGT:PID:PL 0/1:102,124:226:99:1|0:62562169_G_A:2765,0,3581 20 62571417 . AGGG A,AGG 6270.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.202;ClippingRankSum=0;DP=216;ExcessHet=3.0103;FS=7.968;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.15;MQRankSum=0.284;QD=38.95;ReadPosRankSum=-1.081;SOR=0.089 GT:AD:DP:GQ:PL 1/2:4,135,22:181:99:6308,536,599,5053,0,4751 20 62595169 rs817325 A G 7898.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7927,744,0 20 62595547 rs6062599 C T 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.264;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.261;SOR=0.777 GT:AD:DP:GQ:PL 0/1:118,120:238:99:2807,0,3118 20 62595990 rs817326 T C 3459.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.261;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=-1.055;SOR=0.71 GT:AD:DP:GQ:PL 0/1:142,139:281:99:3488,0,3416 20 62597666 rs45486695 C T 4558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.687;SOR=0.853 GT:AD:DP:GQ:PGT:PID:PL 0/1:176,184:360:99:0|1:62597666_C_T:4587,0,4289 20 62597694 rs817329 T G 13078.8 PASS AC=2;AF=1;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.95;SOR=0.863 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,354:354:99:1|1:62597666_C_T:13107,1069,0 20 62598815 rs817330 C T 2289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.807;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=1.864;SOR=0.753 GT:AD:DP:GQ:PL 0/1:122,92:214:99:2318,0,3070 20 62714783 rs6010717 C G 5848.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.61;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5877,554,0 20 62715548 rs4431000 C A 2634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.284;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=2.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=1.602;SOR=0.526 GT:AD:DP:GQ:PL 0/1:135,110:245:99:2663,0,3371 20 62737318 rs13036542 G A 3300.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=1.652;SOR=0.6 GT:AD:DP:GQ:PL 0/1:125,136:261:99:3329,0,2990 20 62737537 rs4809400 C A 3350.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.61;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=4.998;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=2.002;SOR=0.878 GT:AD:DP:GQ:PL 0/1:169,153:322:99:3379,0,4190 20 62737568 rs4809401 T C 3575.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.845;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=9.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-0.38;SOR=0.844 GT:AD:DP:GQ:PL 0/1:155,158:313:99:3604,0,3864 20 62838933 rs6090069 T C 8876.77 PASS AC=2;AF=1;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8905,886,0 20 62844998 . C G 1270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.403;ClippingRankSum=0;DP=131;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.7;ReadPosRankSum=2.189;SOR=0.976 GT:AD:DP:GQ:PL 0/1:75,56:131:99:1299,0,1792 20 62858844 rs41279350 A G 908.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.698;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.745;SOR=1.247 GT:AD:DP:GQ:PL 0/1:47,37:84:99:937,0,1121 20 62859313 rs61746507 C T 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.505;SOR=0.542 GT:AD:DP:GQ:PL 0/1:83,92:175:99:1917,0,1810 21 10906915 rs169758 C T 755.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.73;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.74;ReadPosRankSum=-0.314;SOR=0.741 GT:AD:DP:GQ:PL 0/1:361,74:435:99:784,0,9840 21 10906989 rs210498 C T 415.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0;DB;DP=372;ExcessHet=3.0103;FS=1.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.12;ReadPosRankSum=-0.047;SOR=0.792 GT:AD:DP:GQ:PL 0/1:316,56:372:99:444,0,8477 21 10910291 rs150480 C T 8787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.475;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=4.555;MLEAC=1;MLEAF=0.5;MQ=58.88;MQRankSum=-2.282;QD=37.39;ReadPosRankSum=-0.038;SOR=1.227 GT:AD:DP:GQ:PGT:PID:PL 0/1:20,215:235:99:0|1:10910291_C_T:8816,0,191 21 10910311 rs9996 T G 9228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.767;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.5;MQ=58.95;MQRankSum=-2.349;QD=36.48;ReadPosRankSum=0.478;SOR=0.809 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,230:253:99:0|1:10910291_C_T:9257,0,254 21 10910340 rs62211191 C G 1578.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=10.737;MLEAC=1;MLEAF=0.5;MQ=59.08;MQRankSum=-3.034;QD=6.03;ReadPosRankSum=1.887;SOR=0.756 GT:AD:DP:GQ:PL 0/1:179,83:262:99:1607,0,5262 21 10910347 rs150482 A G 7973.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.07;MQRankSum=-2.164;QD=30.67;ReadPosRankSum=-0.74;SOR=0.677 GT:AD:DP:GQ:PL 1/1:22,238:260:99:8002,114,0 21 10920067 rs4913681 T C 2212.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.143;ClippingRankSum=0;DB;DP=378;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-3.326;QD=5.87;ReadPosRankSum=0.468;SOR=0.798 GT:AD:DP:GQ:PL 0/1:268,109:377:99:2241,0,6360 21 10920098 rs212146 T C 14937.8 PASS AC=2;AF=1;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.97;QD=33.64;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,444:444:99:14966,1337,0 21 10920176 rs62211225 G T 2269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.626;ClippingRankSum=0;DB;DP=374;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=0.668;QD=6.07;ReadPosRankSum=0.086;SOR=0.908 GT:AD:DP:GQ:PL 0/1:260,114:374:99:2298,0,6287 21 10933909 . C T 1161.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0;DP=657;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.83;MQRankSum=0.723;QD=1.77;ReadPosRankSum=1.041;SOR=0.671 GT:AD:DP:GQ:PL 0/1:547,109:656:99:1190,0,14516 21 10935004 rs6582917 A T 2791.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0;DB;DP=433;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.5;MQ=58.31;MQRankSum=-1.899;QD=6.49;ReadPosRankSum=-0.089;SOR=0.553 GT:AD:DP:GQ:PL 0/1:287,143:430:99:2820,0,7005 21 10942756 rs1810540 G A 1786.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.647;ClippingRankSum=0;DB;DP=459;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-0.897;QD=3.92;ReadPosRankSum=-0.953;SOR=0.578 GT:AD:DP:GQ:PL 0/1:350,106:456:99:1815,0,8944 21 10942924 rs113444703 CCTT C 2658.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.606;ClippingRankSum=0;DB;DP=395;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.538;QD=6.82;ReadPosRankSum=-0.096;SOR=0.709 GT:AD:DP:GQ:PL 0/1:304,86:390:99:2696,0,12368 21 10943003 rs1810856 C T 1137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.49;ClippingRankSum=0;DB;DP=343;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-0.979;QD=3.32;ReadPosRankSum=1.095;SOR=0.869 GT:AD:DP:GQ:PL 0/1:269,74:343:99:1166,0,6645 21 10943038 rs2020014 C A 826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.447;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=5.519;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-2.207;QD=3.85;ReadPosRankSum=0.241;SOR=1.218 GT:AD:DP:GQ:PL 0/1:171,44:215:99:855,0,4301 21 10959806 rs212111 G T 716.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0;DB;DP=305;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.41;MQRankSum=-2.178;QD=2.36;ReadPosRankSum=-0.975;SOR=0.67 GT:AD:DP:GQ:PL 0/1:248,56:304:99:745,0,6811 21 10970003 rs469719 G A 1164.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.393;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60.46;MQRankSum=-1.523;QD=4.96;ReadPosRankSum=0.244;SOR=0.767 GT:AD:DP:GQ:PGT:PID:PL 0/1:192,43:235:99:0|1:10970003_G_A:1193,0,10199 21 10970017 rs468525 C T 1173.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.485;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.5;MQ=60.47;MQRankSum=-1.53;QD=5.15;ReadPosRankSum=0.413;SOR=0.802 GT:AD:DP:GQ:PGT:PID:PL 0/1:186,42:228:99:0|1:10970003_G_A:1202,0,10051 21 15011978 rs369300771 T A 62.74 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.78;QD=31.37;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,2:2:6:1|1:15011978_T_A:90,6,0 21 15481365 rs7278737 G T 860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.77;ClippingRankSum=0;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.76;ReadPosRankSum=0.199;SOR=0.788 GT:AD:DP:GQ:PL 0/1:39,41:80:99:889,0,968 21 15516976 rs7283442 T A 2207.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2236,225,0 21 15558346 rs397517 G A 761.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.62;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=2.075;SOR=0.693 GT:AD:DP:GQ:PL 0/1:38,38:76:99:790,0,974 21 15593495 rs378280 T G 691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=0.536;SOR=0.841 GT:AD:DP:GQ:PL 0/1:22,31:53:99:720,0,479 21 15596772 rs409782 T G 1447.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1476,150,0 21 15599354 rs139439630 G A 2698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.084;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0.016;QD=10.26;ReadPosRankSum=2.175;SOR=0.707 GT:AD:DP:GQ:PL 0/1:130,133:263:99:2727,0,3265 21 15599586 rs192706210 G A 1942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.907;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=0.89;SOR=0.999 GT:AD:DP:GQ:PL 0/1:77,74:151:99:1971,0,1832 21 15954528 rs2822785 G A 4641.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.01;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4670,480,0 21 15954660 rs2822787 T C 4249.77 PASS AC=2;AF=1;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.94;SOR=0.988 GT:AD:DP:GQ:PL 1/1:0,129:129:99:4278,386,0 21 16340289 rs2229741 C T 1356.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.11;ReadPosRankSum=-0.773;SOR=0.75 GT:AD:DP:GQ:PL 0/1:90,59:149:99:1385,0,2427 21 19169218 rs2824495 G C 2988.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3017,292,0 21 19628809 rs200762308 CT C 112.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.665;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.15;ReadPosRankSum=-1.236;SOR=0.77 GT:AD:DP:GQ:PL 0/1:80,18:118:99:150,0,1879 21 19653342 rs3215891 AT A 106.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.163;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.17;ReadPosRankSum=1.126;SOR=0.552 GT:AD:DP:GQ:PL 0/1:73,18:99:99:144,0,1732 21 19666910 rs2824718 A G 1729.77 PASS AC=2;AF=1;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.89;SOR=1.009 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1758,168,0 21 19670118 rs2824721 G A 2475.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2504,255,0 21 19685405 rs7281534 A G 798.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.974;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=-0.804;SOR=1.075 GT:AD:DP:GQ:PL 0/1:46,37:83:99:827,0,1032 21 19713821 rs2824751 C T 1457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=1.512;SOR=0.6 GT:AD:DP:GQ:PL 0/1:64,69:133:99:1486,0,1535 21 19756040 rs2824790 C G 1874.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=1.193;SOR=0.74 GT:AD:DP:GQ:PL 0/1:86,86:172:99:1903,0,2132 21 22696837 rs232467 C G 2678.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.014 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2707,273,0 21 22841123 rs2250508 G A 357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.398;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=5.213;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.26;ReadPosRankSum=-2.555;SOR=1.432 GT:AD:DP:GQ:PL 0/1:64,20:84:99:386,0,1515 21 22881251 rs2017705 A G 2008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=0.778;QD=14.77;ReadPosRankSum=-0.914;SOR=0.658 GT:AD:DP:GQ:PL 0/1:50,86:136:99:2037,0,1124 21 26965148 rs1135638 G A 1827.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=0.653;SOR=0.572 GT:AD:DP:GQ:PL 0/1:79,80:159:99:1856,0,1742 21 26965205 rs1057885 T C 2020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.711;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=0.223;SOR=0.689 GT:AD:DP:GQ:PL 0/1:78,86:164:99:2049,0,1733 21 26969703 rs1135618 T C 1274.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.55;ReadPosRankSum=1.061;SOR=0.479 GT:AD:DP:GQ:PL 0/1:27,55:82:99:1303,0,584 21 26973663 rs140202502 A ATATACT 2046.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.114;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=24.08;ReadPosRankSum=0.717;SOR=0.784 GT:AD:DP:GQ:PL 0/1:33,52:85:99:2084,0,2034 21 26976250 rs7278164 A G 1145.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0.67;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.95;ReadPosRankSum=0.137;SOR=0.595 GT:AD:DP:GQ:PL 0/1:74,54:128:99:1174,0,1845 21 26978950 rs3989369 A G 1351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.134;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=5.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.23;ReadPosRankSum=-1.566;SOR=1.264 GT:AD:DP:GQ:PL 0/1:47,48:95:99:1380,0,1108 21 27852724 rs966410 A G 1900.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.884;SOR=0.98 GT:AD:DP:GQ:PL 0/1:98,82:180:99:1929,0,2203 21 28212760 rs436525 G A 3048.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.276;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=0.699;SOR=0.784 GT:AD:DP:GQ:PL 0/1:101,115:216:99:3077,0,2401 21 28216595 rs428785 C G 2708.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.246;SOR=0.464 GT:AD:DP:GQ:PL 0/1:117,109:226:99:2737,0,2979 21 28216692 rs445784 G T 3294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0;DB;DP=297;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=0.802;SOR=0.774 GT:AD:DP:GQ:PL 0/1:158,139:297:99:3323,0,4088 21 28217178 rs434857 T G 4360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.574;SOR=0.614 GT:AD:DP:GQ:PL 0/1:140,173:313:99:4389,0,3521 21 28302355 rs226794 A G 5135.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.06;SOR=1.088 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5164,548,0 21 28338298 rs457947 C G 4004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.535;ClippingRankSum=0;DB;DP=314;ExcessHet=3.0103;FS=5.09;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=0.082;SOR=0.639 GT:AD:DP:GQ:PL 0/1:161,152:313:99:4033,0,4007 21 28338423 rs55933916 C G 3664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.576;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=3.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=2.073;SOR=0.914 GT:AD:DP:GQ:PL 0/1:153,132:285:99:3693,0,4172 21 30250555 rs2205446 T C 2984.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.75;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,94:94:99:3013,281,0 21 30250615 rs2205447 T C 3457.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3486,330,0 21 30257560 rs1997606 C G 10635.8 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.32;SOR=0.744 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,240:240:99:1|1:30257560_C_G:10664,725,0 21 30257568 rs1997607 T C 10655.8 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.96;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,237:237:99:1|1:30257560_C_G:10684,728,0 21 30318207 rs2250574 T C 1079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.45;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=3.381;SOR=0.813 GT:AD:DP:GQ:PL 0/1:78,51:129:99:1108,0,1779 21 30318466 rs2243552 T G 648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.53;ClippingRankSum=0;DB;DP=68;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=-0.17;SOR=0.867 GT:AD:DP:GQ:PL 0/1:41,27:68:99:677,0,1121 21 30341891 rs2254796 A G 1035.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.842;SOR=0.725 GT:AD:DP:GQ:PL 0/1:49,45:94:99:1064,0,1192 21 30357163 rs2245431 G T 1208.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.732;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.964;SOR=0.547 GT:AD:DP:GQ:PL 0/1:58,53:111:99:1237,0,1324 21 30714776 rs388707 T C 1577.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.463;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.153;SOR=0.91 GT:AD:DP:GQ:PL 0/1:67,65:132:99:1606,0,1635 21 30971183 rs363430 G A 948.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.35;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,36:36:99:977,108,0 21 31062070 rs363538 T G 768.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.947;SOR=0.77 GT:AD:DP:GQ:PL 0/1:45,33:78:99:797,0,1220 21 31587793 rs686364 A G 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.482;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.164;SOR=0.771 GT:AD:DP:GQ:PL 0/1:94,72:166:99:1677,0,2250 21 31655212 rs1557291 A C 2756.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.96;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2785,276,0 21 31661653 rs2832759 A G 1464.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-2.518;SOR=0.62 GT:AD:DP:GQ:PL 0/1:68,63:131:99:1493,0,1686 21 31661691 rs8127420 A G 1420.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.295;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=3.857;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.29;ReadPosRankSum=0.999;SOR=0.817 GT:AD:DP:GQ:PL 0/1:91,62:153:99:1449,0,2152 21 31709691 rs2244485 G A 2027.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.214;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=3.179;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.212;SOR=0.795 GT:AD:DP:GQ:PL 0/1:126,82:208:99:2056,0,3152 21 31744127 rs877346 A T 2778.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.856;ClippingRankSum=0;DB;DP=205;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=59.99;MQRankSum=-0.938;QD=13.55;ReadPosRankSum=1.858;SOR=0.779 GT:AD:DP:GQ:PL 0/1:97,108:205:99:2807,0,2396 21 31744310 rs3804010 G C 3745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=0.091;SOR=0.737 GT:AD:DP:GQ:PL 0/1:173,149:322:99:3774,0,4676 21 31802768 rs2226548 G A 8994.77 PASS AC=2;AF=1;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,299:299:99:9023,896,0 21 31803054 rs999597 G A 1871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.09;ReadPosRankSum=2.232;SOR=0.817 GT:AD:DP:GQ:PL 0/1:46,78:124:99:1900,0,1021 21 31812772 rs2832873 C A 5129.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5158,510,0 21 31859677 rs6516970 G A 922.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=25.63;SOR=1.547 GT:AD:DP:GQ:PL 1/1:0,36:36:99:951,107,0 21 31869286 rs2298437 T C 3228.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.99;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3257,285,0 21 31913981 rs5843453 AG A 4954.73 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=45.04;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,110:110:99:1|1:31913981_AG_A:4992,346,0 21 31914000 rs1023364 T A 5158.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.09;QD=42.99;SOR=1.169 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,120:120:99:1|1:31913981_AG_A:5187,370,0 21 31973516 rs198915 T A 4806.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4835,497,0 21 32201822 rs9982910 G T 6798.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.02;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,151:151:99:1|1:32201822_G_T:6827,472,0 21 32201835 rs9982675 A C 6864.77 PASS AC=2;AF=1;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.28;QD=43.72;SOR=0.758 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,157:157:99:1|1:32201822_G_T:6893,478,0 21 32201866 rs9982755 A G 4885.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.27;QD=30.73;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4914,477,0 21 32201951 rs9982775 A G 5750.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.32;QD=42.92;SOR=0.957 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,134:134:99:1|1:32201951_A_G:5779,409,0 21 32201969 rs35359062 GA G 5365.73 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.37;QD=45.86;SOR=0.856 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,117:117:99:1|1:32201951_A_G:5403,370,0 21 32493031 rs762194 A G 7902.77 PASS AC=2;AF=1;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,265:265:99:7931,794,0 21 32499473 rs2070410 A G 3734.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=1.532 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3763,360,0 21 33068865 rs33982658 T TA 76.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.383;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.76;ReadPosRankSum=0.71;SOR=0.868 GT:AD:DP:GQ:PL 0/1:84,17:108:99:114,0,1813 21 33245977 rs11389494 C CG 2343.73 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=34.98;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2381,202,0 21 33368188 rs2070371 T C 4174.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=0.707 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4203,417,0 21 33370900 rs9305483 T C 4423.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4452,440,0 21 33694224 rs3761342 C G 2267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.641;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=0.599;SOR=0.672 GT:AD:DP:GQ:PL 0/1:99,93:192:99:2296,0,2442 21 33719695 rs2070378 C T 4069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=0.86;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=1.151;SOR=0.635 GT:AD:DP:GQ:PL 0/1:149,161:310:99:4098,0,3995 21 33726326 rs915529 G A 2703.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.045;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.86;ReadPosRankSum=1.36;SOR=0.716 GT:AD:DP:GQ:PL 0/1:130,119:249:99:2732,0,3066 21 33755763 rs2833795 G A 1666.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.01;ReadPosRankSum=-0.787;SOR=0.505 GT:AD:DP:GQ:PL 0/1:110,75:185:99:1695,0,2742 21 33830006 rs55878843 G A 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-2.018;SOR=0.848 GT:AD:DP:GQ:PL 0/1:71,68:139:99:1559,0,1795 21 34166190 rs74617086 A T 3577.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=1.362 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3606,351,0 21 34166343 rs2231390 C T 6108.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,197:197:99:6137,591,0 21 34399401 rs762178 A G 2858.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.159;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.071;SOR=0.789 GT:AD:DP:GQ:PL 0/1:115,112:227:99:2887,0,3033 21 34400146 rs9982080 G T 1585.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=2.072;SOR=0.732 GT:AD:DP:GQ:PL 0/1:96,64:160:99:1614,0,2697 21 34635079 . C CT 164.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.15;ClippingRankSum=0;DP=126;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=1.379;QD=1.77;ReadPosRankSum=-0.555;SOR=0.495 GT:AD:DP:GQ:PL 0/1:74,19:114:99:202,0,1454 21 34799350 rs11910627 C G 878.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.4;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=1.615;SOR=0.698 GT:AD:DP:GQ:PL 0/1:46,36:82:99:907,0,1213 21 34805197 rs17883129 C T 797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.997;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0.94;MLEAC=1;MLEAF=0.5;MQ=61.35;MQRankSum=2.55;QD=12.27;ReadPosRankSum=1.218;SOR=0.54 GT:AD:DP:GQ:PL 0/1:26,39:77:99:826,0,918 21 34897113 rs8788 C T 1645.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.16;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=1.76;SOR=0.646 GT:AD:DP:GQ:PL 0/1:80,68:148:99:1674,0,2075 21 34900924 rs5843611 G GA 109.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.555;ClippingRankSum=0;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.139;QD=3.78;ReadPosRankSum=0.291;SOR=0.645 GT:AD:DP:GQ:PL 0/1:20,9:37:99:147,0,386 21 34903875 . AT A 228.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0;DP=71;ExcessHet=3.0103;FS=8.969;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.099;QD=4.32;ReadPosRankSum=0.431;SOR=1.668 GT:AD:DP:GQ:PL 0/1:33,20:62:99:266,0,545 21 34924243 rs16990760 T C 2582.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.137;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.45;ReadPosRankSum=-1.501;SOR=0.882 GT:AD:DP:GQ:PL 0/1:98,94:192:99:2611,0,2561 21 34925142 rs13433428 C T 4893.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4922,486,0 21 34925689 rs61739710 G A 2177.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-2.595;SOR=0.737 GT:AD:DP:GQ:PL 0/1:96,94:190:99:2206,0,2449 21 34926260 rs13047599 C T 1484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=0.024;SOR=0.608 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1513,0,2219 21 34945721 rs3174808 T C 1557.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.786;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.75;ReadPosRankSum=-0.658;SOR=0.515 GT:AD:DP:GQ:PL 0/1:32,61:93:99:1586,0,650 21 34948684 rs34377180 G GA 2114.73 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.06;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,48:48:99:1|1:34948684_G_GA:2152,144,0 21 34948696 rs34373121 GA G 2155.73 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.99;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,49:49:99:1|1:34948684_G_GA:2193,147,0 21 35237608 rs9976801 T C 2439.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.51;ReadPosRankSum=0.807;SOR=0.685 GT:AD:DP:GQ:PL 0/1:85,110:195:99:2468,0,1819 21 35260481 rs2073370 T C 1580.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.057;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=-0.926;SOR=0.946 GT:AD:DP:GQ:PL 0/1:94,70:164:99:1609,0,2199 21 35275955 rs9980730 G A 3399.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.06;SOR=1.258 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3428,351,0 21 35281393 rs4591 A G 2014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.575;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=7.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.069;SOR=0.994 GT:AD:DP:GQ:PL 0/1:105,88:193:99:2043,0,2369 21 35284683 rs78234759 A G 1387.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.74;ReadPosRankSum=-0.967;SOR=0.719 GT:AD:DP:GQ:PL 0/1:44,57:101:99:1416,0,941 21 35467645 rs8129891 A G 4337.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.86;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4366,396,0 21 35469193 rs4817617 C A 4104.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4133,390,0 21 35821821 rs1805127 T C 2291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=0.018;SOR=0.648 GT:AD:DP:GQ:PL 0/1:94,100:194:99:2320,0,2306 21 36041978 rs7280973 A G 9404.77 PASS AC=2;AF=1;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.83;SOR=0.967 GT:AD:DP:GQ:PL 1/1:0,278:278:99:9433,834,0 21 36042203 rs9680380 G C 12935.8 PASS AC=2;AF=1;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.32;QD=28.49;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,454:456:99:12964,1349,0 21 36042462 rs67358718 GGCGTAGAAGCGGGGGTCCCGGCGGGGGACA G 3592.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.171;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=9.383;MLEAC=1;MLEAF=0.5;MQ=62.42;MQRankSum=8.975;QD=17.19;ReadPosRankSum=0.833;SOR=1.246 GT:AD:DP:GQ:PL 0/1:110,99:209:99:3630,0,4212 21 36042579 rs13049028 C G 4291.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.334;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.47;MQRankSum=6.715;QD=17.38;ReadPosRankSum=-0.021;SOR=0.715 GT:AD:DP:GQ:PGT:PID:PL 0/1:132,115:247:99:0|1:36042579_C_G:4320,0,5257 21 36042584 rs13049239 G A 4410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.313;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=61.34;MQRankSum=6.507;QD=17.3;ReadPosRankSum=-0.04;SOR=0.692 GT:AD:DP:GQ:PGT:PID:PL 0/1:137,118:255:99:0|1:36042579_C_G:4439,0,5304 21 37410477 rs2835239 T C 1019.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.525;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.85;ReadPosRankSum=-0.717;SOR=0.792 GT:AD:DP:GQ:PL 0/1:53,41:94:99:1048,0,1341 21 37414194 rs71326617 C CA,CAA 914.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=0.266;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=18.29;ReadPosRankSum=-0.376;SOR=0.866 GT:AD:DP:GQ:PL 1/2:8,25,17:56:99:952,271,326,328,0,552 21 37442632 rs25678 G C 3358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.922;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.04;ReadPosRankSum=0.38;SOR=0.577 GT:AD:DP:GQ:PL 0/1:141,138:279:99:3387,0,3872 21 37444697 rs2835266 G A 1990.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.279;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=7.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.45;ReadPosRankSum=0.957;SOR=0.991 GT:AD:DP:GQ:PL 0/1:46,75:121:99:2019,0,1040 21 37507501 rs8133052 G A 2969.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=3.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.067;SOR=0.96 GT:AD:DP:GQ:PL 0/1:118,123:241:99:2998,0,3091 21 37507745 rs881711 C T 7956.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.15;SOR=1.13 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,233:233:99:1|1:37507745_C_T:7985,698,0 21 37507769 rs881712 C T 1838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=3.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=0.315;SOR=0.97 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,81:187:99:0|1:37507745_C_T:1867,0,2751 21 37518362 rs2835286 A G 486.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.854;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.32;ReadPosRankSum=2.098;SOR=1.179 GT:AD:DP:GQ:PL 0/1:23,20:43:99:515,0,542 21 37518582 rs17849671 G A 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.559;ClippingRankSum=0;DB;DP=155;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.88;SOR=0.613 GT:AD:DP:GQ:PL 0/1:83,71:154:99:1796,0,2048 21 37609571 rs2835322 T C 7345.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7374,738,0 21 37617630 rs4817788 T G 10858.8 PASS AC=2;AF=1;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.11;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,349:349:99:10887,1047,0 21 37664501 rs9978057 G A 1437.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.671;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.34;ReadPosRankSum=1.678;SOR=0.571 GT:AD:DP:GQ:PL 0/1:71,68:139:99:1466,0,1773 21 37734540 rs143622574 CT C 137.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.85;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.68;ReadPosRankSum=-0.553;SOR=1.007 GT:AD:DP:GQ:PL 0/1:64,18:98:99:175,0,1321 21 37781046 rs75530000 C T 458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.65;ReadPosRankSum=-0.837;SOR=0.685 GT:AD:DP:GQ:PL 0/1:36,24:60:99:487,0,860 21 38081480 rs116988298 C T 1718.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.563;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=2.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.819;SOR=0.872 GT:AD:DP:GQ:PL 0/1:72,77:149:99:1747,0,1858 21 38081562 rs2070647 T G 3845.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3874,366,0 21 38113998 rs2070519 C A 3554.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.18;SOR=1.412 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3583,342,0 21 38117308 rs2073601 C A 2509.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.03;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-1.691;SOR=0.825 GT:AD:DP:GQ:PL 0/1:122,111:233:99:2538,0,3265 21 38379132 . C G 2129.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0;DP=226;ExcessHet=3.0103;FS=2.257;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.47;ReadPosRankSum=1.726;SOR=0.624 GT:AD:DP:GQ:PL 0/1:117,108:225:99:2158,0,2621 21 38444863 rs2507733 C T 3659.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3688,363,0 21 38444890 rs2298682 A G 3375.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.97;SOR=1.049 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3404,327,0 21 38460488 rs2835585 T A 2688.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=1.481 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2717,267,0 21 38468958 rs2835600 A G 1423.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1452,144,0 21 38495270 rs11440326 A AT 2900.73 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.19;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2938,235,0 21 38532058 rs34771928 TG T 3286.73 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.93;SOR=1.141 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3324,268,0 21 38564530 rs202143959 CT C 47.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.27;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.78;ReadPosRankSum=0.533;SOR=0.973 GT:AD:DP:GQ:PL 0/1:50,11:70:85:85,0,1154 21 38599934 rs11300896 TG T 6176.73 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.5;SOR=1.225 GT:AD:DP:GQ:PL 1/1:0,174:174:99:6214,524,0 21 38997701 rs702859 G A 3791.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.58;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3820,371,0 21 39086965 rs2070995 T C 4303.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.154 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4332,417,0 21 39671476 rs2230033 G A 2086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.81;ReadPosRankSum=-2.136;SOR=0.654 GT:AD:DP:GQ:PL 0/1:105,88:193:99:2115,0,2796 21 39870310 rs2836441 G A 2363.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2392,237,0 21 40191431 rs457705 T G 1683.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.169;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=5.31;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=1.269;SOR=1.149 GT:AD:DP:GQ:PL 0/1:67,68:135:99:1712,0,1631 21 40191638 rs461155 A G 2058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.308;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=-1.301;SOR=0.837 GT:AD:DP:GQ:PL 0/1:75,89:164:99:2087,0,1595 21 40552307 rs3171465 A G 1400.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.016;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.816;SOR=0.55 GT:AD:DP:GQ:PL 0/1:67,59:126:99:1429,0,1727 21 40571246 rs1041439 A G 2090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.176;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.407;SOR=0.558 GT:AD:DP:GQ:PL 0/1:105,87:192:99:2119,0,2551 21 40574305 rs2183573 A G 1250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.266;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=3.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=2.184;SOR=1.073 GT:AD:DP:GQ:PL 0/1:62,50:112:99:1279,0,1512 21 40584598 rs6517529 C T 680.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=3.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.836;SOR=0.865 GT:AD:DP:GQ:PL 0/1:35,30:65:99:709,0,908 21 40642189 rs6517532 C T 523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.523;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.02;ReadPosRankSum=0.277;SOR=0.659 GT:AD:DP:GQ:PL 0/1:63,24:87:99:552,0,1716 21 40670460 rs2056844 G C 1941.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.11;ReadPosRankSum=-0.524;SOR=0.612 GT:AD:DP:GQ:PL 0/1:106,86:192:99:1970,0,2617 21 40685239 rs34240248 A G 3063.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.192;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.7;ReadPosRankSum=-0.142;SOR=0.535 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,79:148:99:0|1:40685239_A_G:3092,0,2917 21 40720494 rs34613278 C T 1312.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.423;SOR=0.429 GT:AD:DP:GQ:PL 0/1:51,51:102:99:1341,0,1343 21 40800371 rs2837029 C T 3109.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=1.148 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3138,327,0 21 40823902 rs11575939 C G 6083.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.53;SOR=1.166 GT:AD:DP:GQ:PL 1/1:0,187:187:99:6112,560,0 21 40823981 rs6517549 G A 5136.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.932 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5165,525,0 21 41029831 rs2222996 T C 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.251;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.718;SOR=0.746 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1600,0,1699 21 41032740 rs3746887 T C 3841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=8.76;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.55;ReadPosRankSum=0.165;SOR=0.38 GT:AD:DP:GQ:PL 0/1:112,152:264:99:3870,0,2640 21 41032804 rs734413 G A 3110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=3.235;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-1.954;SOR=0.782 GT:AD:DP:GQ:PL 0/1:142,139:281:99:3139,0,3395 21 41137499 rs12626544 A G 6168.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.06;SOR=1.34 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,140:140:99:1|1:41137499_A_G:6197,421,0 21 41137507 rs2205204 G C 6191.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.55;SOR=1.237 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,139:139:99:1|1:41137499_A_G:6220,424,0 21 41165462 rs2837225 C A 2279.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.5;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2308,240,0 21 41725625 rs41395652 C T 2120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.383;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=0.54;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.217;SOR=0.749 GT:AD:DP:GQ:PL 0/1:99,88:187:99:2149,0,2343 21 42615293 rs2252576 C T 876.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0;DB;DP=72;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-1.226;SOR=0.526 GT:AD:DP:GQ:PL 0/1:30,42:72:99:905,0,697 21 42717662 rs417708 T C 1347.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1376,129,0 21 42775179 rs112479250 G GT 1796.73 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.78;SOR=1.005 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,42:42:99:1|1:42775179_G_GT:1834,126,0 21 42775180 rs459763 C T 1805.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.99;SOR=1.005 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,42:42:99:1|1:42775179_G_GT:1834,126,0 21 42812891 rs467960 C T 6237.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6266,623,0 21 42817930 rs469390 G A 4073.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.31;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4102,417,0 21 42824733 rs469304 G A 5545.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.66;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5574,560,0 21 42845374 rs2298659 G A 7378.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7407,723,0 21 42848560 rs140530035 CAG C 3928.73 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.68;QD=43.65;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3966,271,0 21 42852497 rs12329760 C T 6445.77 PASS AC=2;AF=1;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.906 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6474,643,0 21 43161022 rs7276592 C T 2656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.324;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.264;SOR=0.754 GT:AD:DP:GQ:PL 0/1:126,116:242:99:2685,0,2977 21 43161357 rs3746891 T C 9668.77 PASS AC=2;AF=1;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,310:310:99:9697,930,0 21 43161805 rs2838113 G A 7030.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.812 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7059,687,0 21 43161877 rs3746893 C T 2805.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.971;ClippingRankSum=0;DB;DP=249;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-1.068;SOR=0.836 GT:AD:DP:GQ:PL 0/1:129,119:248:99:2834,0,3516 21 43162150 rs3746894 G A 1114.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.384;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=-1.882;SOR=0.677 GT:AD:DP:GQ:PL 0/1:78,50:128:99:1143,0,1974 21 43164232 rs2277789 C A 2395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.743;SOR=0.731 GT:AD:DP:GQ:PL 0/1:99,101:200:99:2424,0,2550 21 43169357 rs2838114 C G 1088.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.868;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.71;ReadPosRankSum=-0.604;SOR=0.618 GT:AD:DP:GQ:PL 0/1:75,50:125:99:1117,0,1779 21 43176799 rs13049286 T G 3384.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.843;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=1.12;SOR=0.711 GT:AD:DP:GQ:PL 0/1:141,126:267:99:3413,0,3398 21 43176832 rs2277791 A G 3253.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.775;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.444;SOR=0.695 GT:AD:DP:GQ:PL 0/1:138,128:266:99:3282,0,3400 21 43221483 rs3850706 A G 6939.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.78;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,233:233:99:6968,698,0 21 43221555 rs2236694 G A 2927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.269;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=2.148;SOR=0.626 GT:AD:DP:GQ:PL 0/1:107,116:223:99:2956,0,2637 21 43221826 rs2236696 T C 3477.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.106;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.49;ReadPosRankSum=0.516;SOR=0.94 GT:AD:DP:GQ:PL 0/1:106,134:240:99:3506,0,2359 21 43224683 rs2298687 A G 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.789;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.01;ReadPosRankSum=-0.156;SOR=1.214 GT:AD:DP:GQ:PL 0/1:73,46:119:99:982,0,1673 21 43239972 rs28477638 A G 1694.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.182;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=-0.384;SOR=0.644 GT:AD:DP:GQ:PL 0/1:107,75:182:99:1723,0,2399 21 43254623 rs113774580 C G 899.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.981;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.38;ReadPosRankSum=-0.546;SOR=0.813 GT:AD:DP:GQ:PL 0/1:81,41:122:99:928,0,2038 21 43274844 rs116907174 C T 2989.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.339;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.638;SOR=0.742 GT:AD:DP:GQ:PL 0/1:115,122:237:99:3018,0,2854 21 43277279 rs3833355 C CT 1764.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.83;ReadPosRankSum=1.172;SOR=0.552 GT:AD:DP:GQ:PL 0/1:53,66:119:99:1802,0,1342 21 43298954 rs202107842 C CG 978.73 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=2.093 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1016,93,0 21 43299261 rs112381381 G A 270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.28;ReadPosRankSum=0.22;SOR=1.148 GT:AD:DP:GQ:PL 0/1:12,12:24:99:299,0,308 21 43327856 rs3746906 A G 4699.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.02;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.72;ReadPosRankSum=1.151;SOR=0.909 GT:AD:DP:GQ:PL 1/1:2,151:153:99:4728,409,0 21 43504228 rs7278485 T C 2496.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-1.26;SOR=0.765 GT:AD:DP:GQ:PL 0/1:119,107:226:99:2525,0,2849 21 43510514 rs2839464 C G 2792.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.653;SOR=0.839 GT:AD:DP:GQ:PL 0/1:113,115:228:99:2821,0,2897 21 43519032 rs220312 G A 2466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.42;SOR=0.564 GT:AD:DP:GQ:PL 0/1:113,111:224:99:2495,0,2786 21 43522349 rs220109 T C 4281.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.1;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4310,472,0 21 43531008 rs220126 T C 5880.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.378 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5909,582,0 21 43531403 rs220127 C G 18470.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=686;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.96;MQRankSum=0;QD=29.23;ReadPosRankSum=0.949;SOR=0.463 GT:AD:DP:GQ:PL 1/1:5,627:632:99:18499,1693,0 21 43531553 rs220128 A C 14115.8 PASS AC=2;AF=1;AN=2;DB;DP=427;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.06;SOR=0.996 GT:AD:DP:GQ:PL 1/1:0,427:427:99:14144,1281,0 21 43531632 rs220129 T C 11530.8 PASS AC=2;AF=1;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=0.98 GT:AD:DP:GQ:PL 1/1:0,353:353:99:11559,1059,0 21 43531808 rs220130 A C 7279.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,230:230:99:7308,690,0 21 43539293 rs220146 G A 4927.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.48;SOR=0.827 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4956,518,0 21 43541342 rs220150 C T 6120.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.991;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.71;ReadPosRankSum=-0.445;SOR=0.458 GT:AD:DP:GQ:PL 1/1:1,205:206:99:6149,607,0 21 43547788 rs220158 T C 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.858;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=2.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.55;ReadPosRankSum=1.655;SOR=0.517 GT:AD:DP:GQ:PL 0/1:101,92:193:99:2257,0,2343 21 43547873 rs220159 G A 2383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.326;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.65;ReadPosRankSum=-1.458;SOR=0.658 GT:AD:DP:GQ:PL 0/1:137,110:247:99:2412,0,3198 21 43704650 rs2234719 C T 5180.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.334 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5209,506,0 21 43786512 rs225358 C T 953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.535;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.66;SOR=0.913 GT:AD:DP:GQ:PL 0/1:53,43:96:99:982,0,1254 21 43786606 rs2156310 G A 1205.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.184;SOR=0.924 GT:AD:DP:GQ:PL 0/1:53,55:108:99:1234,0,1358 21 43792869 rs13047838 C T 620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.91;ReadPosRankSum=-2.549;SOR=0.587 GT:AD:DP:GQ:PL 0/1:70,35:105:99:649,0,1916 21 43805637 rs2839501 C T 1380.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.058;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.249;SOR=0.904 GT:AD:DP:GQ:PL 0/1:70,59:129:99:1409,0,1746 21 43805656 rs8130564 T C 1280.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=2.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.04;ReadPosRankSum=-0.467;SOR=0.939 GT:AD:DP:GQ:PL 0/1:62,54:116:99:1309,0,1500 21 43824106 rs2277798 A G 1395.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.252;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.83;ReadPosRankSum=2.268;SOR=0.783 GT:AD:DP:GQ:PL 0/1:81,61:142:99:1424,0,1932 21 43824123 rs2277799 G C 1299.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.55;ReadPosRankSum=2.29;SOR=0.839 GT:AD:DP:GQ:PL 0/1:91,61:152:99:1328,0,2099 21 43855067 rs1893592 A C 2179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.857;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.37;ReadPosRankSum=0.386;SOR=0.661 GT:AD:DP:GQ:PL 0/1:72,91:163:99:2208,0,1486 21 43863521 rs868092 A G 3213.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.2;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3242,309,0 21 43897549 rs149478284 T C 1037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.228;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=0.733;SOR=0.585 GT:AD:DP:GQ:PL 0/1:55,49:104:99:1066,0,1420 21 43905887 rs2839536 C T 2116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.195;SOR=0.727 GT:AD:DP:GQ:PL 0/1:93,97:190:99:2145,0,2239 21 43959770 rs228063 A G 1634.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0;DB;DP=141;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=1.638;SOR=0.809 GT:AD:DP:GQ:PL 0/1:73,68:141:99:1663,0,1945 21 43985955 rs228104 G A 1074.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.28;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.67;ReadPosRankSum=0.464;SOR=0.797 GT:AD:DP:GQ:PL 0/1:74,50:124:99:1103,0,1709 21 43988457 rs35343162 T C 1399.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.042;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=2.284;SOR=0.515 GT:AD:DP:GQ:PL 0/1:48,62:110:99:1428,0,988 21 44180443 rs13047953 C T 540.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.105;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.72;ReadPosRankSum=0.338;SOR=0.653 GT:AD:DP:GQ:PL 0/1:39,23:62:99:569,0,985 21 44180916 rs1547379 G A 508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.058;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=-0.906;QD=12.11;ReadPosRankSum=-2.925;SOR=1.127 GT:AD:DP:GQ:PL 0/1:22,20:42:99:537,0,459 21 44189166 rs1045382 T C 2124.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.532;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.22;ReadPosRankSum=0.433;SOR=0.691 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,58:131:99:0|1:44189166_T_C:2153,0,3627 21 44189172 rs3087994 A C 2099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.442;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.28;ReadPosRankSum=0.782;SOR=0.633 GT:AD:DP:GQ:PGT:PID:PL 0/1:74,55:129:99:0|1:44189166_T_C:2128,0,3663 21 44273858 rs15736 G A 2426.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.955;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=1.125;SOR=0.775 GT:AD:DP:GQ:PL 0/1:88,100:188:99:2455,0,2321 21 44293744 rs2248490 C G 2591.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.49;ReadPosRankSum=1.511;SOR=0.696 GT:AD:DP:GQ:PL 0/1:155,118:273:99:2620,0,3703 21 44323590 rs4148973 T G 2484.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=5.107;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-2.688;SOR=0.784 GT:AD:DP:GQ:PL 0/1:135,111:246:99:2513,0,3321 21 44324365 rs10595 G A 2939.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=2.78;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=1.213;SOR=0.531 GT:AD:DP:GQ:PL 0/1:137,121:258:99:2968,0,3499 21 44430325 rs234781 T C 1609.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.567 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1638,161,0 21 44480616 rs1801181 G A 1498.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=2.87;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=0.42;SOR=0.494 GT:AD:DP:GQ:PL 0/1:78,73:151:99:1527,0,1716 21 44485350 rs234706 G A 1341.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.94;ReadPosRankSum=0.016;SOR=0.58 GT:AD:DP:GQ:PL 0/1:74,61:135:99:1370,0,1791 21 44589215 rs872331 C T 1923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=4.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=0.87;SOR=1.003 GT:AD:DP:GQ:PL 0/1:121,87:208:99:1952,0,3009 21 44837551 rs430552 G A 11300.8 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.49;SOR=0.976 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,254:254:99:1|1:44837551_G_A:11329,782,0 21 44837555 rs430554 G A 11169.8 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.86;SOR=0.932 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,249:249:99:1|1:44837551_G_A:11198,767,0 21 45012149 rs149350852 G A 860.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-1.041;SOR=0.53 GT:AD:DP:GQ:PL 0/1:42,40:82:99:889,0,968 21 45107518 rs7279959 A G 6679.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.22;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.459;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.82;ReadPosRankSum=-0.585;SOR=0.564 GT:AD:DP:GQ:PL 1/1:1,223:224:99:6708,631,0 21 45175958 rs7527 T C 3214.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3243,339,0 21 45215051 rs2838372 A G 1697.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0.84;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.22;ReadPosRankSum=1.431;SOR=0.577 GT:AD:DP:GQ:PGT:PID:PL 0/1:36,44:80:99:0|1:45215046_T_C:1726,0,1951 21 45217559 rs2838378 T C 1847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.572;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-1.247;SOR=0.822 GT:AD:DP:GQ:PL 0/1:79,75:154:99:1876,0,1903 21 45503121 rs2071152 G A 3020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.34;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.69;ReadPosRankSum=-1.752;SOR=0.526 GT:AD:DP:GQ:PL 0/1:110,128:238:99:3049,0,2650 21 45506819 rs1131999 T C 2175.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.192;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=6.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-0.152;SOR=0.531 GT:AD:DP:GQ:PL 0/1:114,99:213:99:2204,0,2983 21 45528919 rs2020945 G A 888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=0.722;SOR=0.727 GT:AD:DP:GQ:PL 0/1:45,44:89:99:917,0,1017 21 45538647 rs756553 T C 1603.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.701;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.84;ReadPosRankSum=0.627;SOR=0.541 GT:AD:DP:GQ:PL 0/1:80,68:148:99:1632,0,1954 21 45538725 rs756554 C A 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.622;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=11.624;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.56;ReadPosRankSum=0.346;SOR=1.488 GT:AD:DP:GQ:PL 0/1:79,50:129:99:1133,0,1965 21 45540919 rs2071143 A G 3069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.96;ReadPosRankSum=-0.816;SOR=0.698 GT:AD:DP:GQ:PL 0/1:146,134:280:99:3098,0,3605 21 45544594 rs2187313 T C 3250.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.746;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=0.937;SOR=0.795 GT:AD:DP:GQ:PL 0/1:147,124:271:99:3279,0,3478 21 45550460 rs11311220 TC T 3505.73 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.21;QD=34.04;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3543,310,0 21 45553596 rs968714 T C 3068.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.137;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.82;ReadPosRankSum=-0.841;SOR=0.855 GT:AD:DP:GQ:PL 0/1:88,119:207:99:3097,0,2062 21 45649778 rs4568033 A G 2705.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.195;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.2;ReadPosRankSum=-1.799;SOR=0.68 GT:AD:DP:GQ:PL 0/1:100,105:205:99:2734,0,2553 21 45649848 rs13052840 T C 2850.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.652;ClippingRankSum=0;DB;DP=202;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.25;ReadPosRankSum=1.049;SOR=0.578 GT:AD:DP:GQ:PL 0/1:96,104:200:99:2879,0,2384 21 45656774 rs11558819 C T 1640.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.597;SOR=0.737 GT:AD:DP:GQ:PL 0/1:68,61:129:99:1669,0,1843 21 45708277 rs878081 C T 1748.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.706;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-1.098;SOR=0.582 GT:AD:DP:GQ:PL 0/1:69,73:142:99:1777,0,1548 21 45712977 rs1800521 T C 5836.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.38;SOR=0.982 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5865,558,0 21 45717550 rs1133779 T C 1942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.34;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.56;ReadPosRankSum=0.238;SOR=0.738 GT:AD:DP:GQ:PL 0/1:95,89:186:99:1971,0,2141 21 45732116 rs1057034 C T 2140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=-0.693;SOR=0.643 GT:AD:DP:GQ:PL 0/1:112,88:200:99:2169,0,2931 21 45733911 rs61750224 G A 1062.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.03;ReadPosRankSum=-1.639;SOR=0.633 GT:AD:DP:GQ:PL 0/1:55,51:106:99:1091,0,1370 21 45750248 rs11552067 G A 2033.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=4.282;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.824;SOR=0.828 GT:AD:DP:GQ:PL 0/1:101,82:183:99:2062,0,2546 21 45817620 rs1785436 T C 6003.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.72;SOR=1.167 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6032,606,0 21 45821794 rs1785437 C T 5401.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.259 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5430,522,0 21 45826462 rs1618355 C A 4301.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.875;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=4.009;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.46;ReadPosRankSum=-0.638;SOR=0.957 GT:AD:DP:GQ:PL 1/1:1,145:146:99:4330,425,0 21 45837790 rs1785452 T C 4611.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.94;SOR=1.936 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4640,396,0 21 45844751 rs9978351 A G 4708.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.25;SOR=1.082 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4737,483,0 21 45945648 rs35028190 G C 2483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.289;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=3.88;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=0.493;SOR=0.491 GT:AD:DP:GQ:PL 0/1:114,98:212:99:2512,0,3112 21 45959195 rs233316 G A 13619.8 PASS AC=2;AF=1;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=30.61;SOR=0.96 GT:AD:DP:GQ:PL 1/1:0,445:445:99:13648,1330,0 21 45959312 rs233317 C T 17885.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.981;ClippingRankSum=0;DB;DP=594;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;MQRankSum=-0.074;QD=30.16;ReadPosRankSum=-0.565;SOR=0.321 GT:AD:DP:GQ:PL 1/1:1,592:593:99:17914,1761,0 21 45959386 rs233318 G A 21905.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0;DB;DP=565;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.29;MQRankSum=3.634;QD=38.77;ReadPosRankSum=-0.235;SOR=0.475 GT:AD:DP:GQ:PL 1/1:3,562:565:99:21934,1654,0 21 45959556 . A ATG 25068.7 PASS AC=2;AF=1;AN=2;DP=570;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=45.09;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,556:556:99:1|1:45959556_A_ATG:25106,1691,0 21 45959557 . ATC A 25068.7 PASS AC=2;AF=1;AN=2;DP=554;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=45.5;SOR=0.719 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,551:551:99:1|1:45959556_A_ATG:25106,1691,0 21 45959733 rs233319 C T 20215.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.283;ClippingRankSum=0;DB;DP=696;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.73;MQRankSum=4.01;QD=29.21;ReadPosRankSum=1.643;SOR=0.91 GT:AD:DP:GQ:PL 1/1:4,688:692:99:20244,1966,0 21 45959918 rs233320 G A 21508.8 PASS AC=2;AF=1;AN=2;DB;DP=712;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.29;SOR=0.923 GT:AD:DP:GQ:PL 1/1:0,710:710:99:21537,2128,0 21 45970718 rs233238 C T 9537.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.691;ClippingRankSum=0;DB;DP=512;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.5;MQ=60.02;MQRankSum=0.932;QD=18.7;ReadPosRankSum=-0.514;SOR=0.632 GT:AD:DP:GQ:PGT:PID:PL 0/1:236,274:510:99:0|1:45970718_C_T:9566,0,7914 21 45970759 rs71199610 ACTTGCAGCAGACAGG A 10067.7 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.075;ClippingRankSum=0;DB;DP=537;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.5;MQ=60.2;MQRankSum=3.185;QD=18.82;ReadPosRankSum=1.621;SOR=0.851 GT:AD:DP:GQ:PGT:PID:PL 0/1:267,268:535:99:0|1:45970718_C_T:10105,0,10388 21 45970812 rs2329834 G A 5286.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0;DB;DP=515;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=-2.725;QD=10.31;ReadPosRankSum=2.405;SOR=0.823 GT:AD:DP:GQ:PL 0/1:283,230:513:99:5315,0,10131 21 45970993 rs233239 C G 11744.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0;DB;DP=683;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.5;MQ=59.37;MQRankSum=0.425;QD=17.3;ReadPosRankSum=-1.026;SOR=0.579 GT:AD:DP:GQ:PGT:PID:PL 0/1:357,322:679:99:0|1:45970993_C_G:11773,0,18311 21 45971018 rs478947 C G 12165.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.367;ClippingRankSum=0;DB;DP=706;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=57.97;MQRankSum=-2.588;QD=17.28;ReadPosRankSum=1.195;SOR=0.647 GT:AD:DP:GQ:PGT:PID:PL 0/1:395,309:704:99:0|1:45970993_C_G:12194,0,20300 21 45971023 rs478967 G T 11792.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0;DB;DP=711;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=57.86;MQRankSum=-3.052;QD=16.63;ReadPosRankSum=0.795;SOR=0.65 GT:AD:DP:GQ:PGT:PID:PL 0/1:394,315:709:99:0|1:45970993_C_G:11821,0,20124 21 45971299 rs233240 T C 7749.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.579;ClippingRankSum=0;DB;DP=541;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.5;MQ=61.93;MQRankSum=0.332;QD=14.35;ReadPosRankSum=-1.653;SOR=0.826 GT:AD:DP:GQ:PL 0/1:242,298:540:99:7778,0,5815 21 45978090 rs233252 C T 16160.8 PASS AC=2;AF=1;AN=2;DB;DP=567;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=28.6;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,565:565:99:16189,1685,0 21 45978488 rs12483390 G A 7574.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0;DB;DP=735;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=59.67;MQRankSum=-4.371;QD=10.36;ReadPosRankSum=-0.061;SOR=0.757 GT:AD:DP:GQ:PL 0/1:400,331:731:99:7603,0,10072 21 45978499 rs377549 T G 26894.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.03;ClippingRankSum=0;DB;DP=729;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.67;MQRankSum=-0.266;QD=38.2;ReadPosRankSum=-1.179;SOR=0.997 GT:AD:DP:GQ:PL 1/1:2,702:704:99:26923,2052,0 21 45978503 rs435424 G A 31743.8 PASS AC=2;AF=1;AN=2;DB;DP=683;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.81;QD=46.55;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,682:682:99:31772,2146,0 21 45978592 rs452472 T C 5618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.28;ClippingRankSum=0;DB;DP=431;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=-0.963;QD=13.07;ReadPosRankSum=0.628;SOR=0.712 GT:AD:DP:GQ:PL 0/1:208,222:430:99:5647,0,5076 21 45993819 rs233285 C T 8881.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0;DB;DP=669;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.5;MQ=41.27;MQRankSum=10.546;QD=13.28;ReadPosRankSum=-1.566;SOR=0.599 GT:AD:DP:GQ:PL 0/1:313,356:669:99:8910,0,11134 21 45993824 rs201222509 G A 5942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-9.204;ClippingRankSum=0;DB;DP=661;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=41.53;MQRankSum=-4.918;QD=8.99;ReadPosRankSum=0.187;SOR=0.728 GT:AD:DP:GQ:PL 0/1:478,183:661:99:5971,0,19617 21 45993841 rs78682408 C G 5919.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.122;ClippingRankSum=0;DB;DP=668;ExcessHet=3.0103;FS=3.71;MLEAC=1;MLEAF=0.5;MQ=42.45;MQRankSum=-6.387;QD=8.89;ReadPosRankSum=-1.155;SOR=0.999 GT:AD:DP:GQ:PL 0/1:482,184:668:99:5948,0,19144 21 45993851 rs201895065 C T 1648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=9.26;ClippingRankSum=0;DB;DP=661;ExcessHet=3.0103;FS=0.75;MLEAC=1;MLEAF=0.5;MQ=42.82;MQRankSum=-9.741;QD=2.49;ReadPosRankSum=0.288;SOR=0.819 GT:AD:DP:GQ:PL 0/1:564,97:661:99:1677,0,17743 21 45994110 rs201015288 A G 3637.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=9.78;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=7.88;MLEAC=1;MLEAF=0.5;MQ=45.25;MQRankSum=-12.978;QD=9.3;ReadPosRankSum=-2.172;SOR=0.433 GT:AD:DP:GQ:PL 0/1:249,142:391:99:3666,0,6549 21 45999753 rs464424 C G 6307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.256;ClippingRankSum=0;DB;DP=550;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=0;QD=11.6;ReadPosRankSum=-1.235;SOR=0.55 GT:AD:DP:GQ:PL 0/1:282,262:544:99:6336,0,6534 21 46000398 rs2020221 C T 6315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.424;ClippingRankSum=0;DB;DP=574;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=1.419;SOR=0.66 GT:AD:DP:GQ:PL 0/1:311,263:574:99:6344,0,8155 21 46011468 rs465279 G A 7110.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.999;ClippingRankSum=0;DB;DP=591;ExcessHet=3.0103;FS=2.427;MLEAC=1;MLEAF=0.5;MQ=58.21;MQRankSum=-1.479;QD=12.07;ReadPosRankSum=-1.444;SOR=0.835 GT:AD:DP:GQ:PL 0/1:298,291:589:99:7139,0,7480 21 46011583 rs233303 G T 7229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.174;ClippingRankSum=0;DB;DP=673;ExcessHet=3.0103;FS=0.52;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=-0.162;QD=10.76;ReadPosRankSum=-1.978;SOR=0.767 GT:AD:DP:GQ:PL 0/1:363,309:672:99:7258,0,9604 21 46011745 rs233304 C T 26400.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.443;ClippingRankSum=0;DB;DP=714;ExcessHet=3.0103;FS=13.835;MLEAC=1;MLEAF=0.5;MQ=55.81;MQRankSum=13.317;QD=37.34;ReadPosRankSum=5.757;SOR=0.175 GT:AD:DP:GQ:PL 0/1:65,642:714:99:26429,0,772 21 46011751 rs233305 C T 26341.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.172;ClippingRankSum=0;DB;DP=721;ExcessHet=3.0103;FS=11.765;MLEAC=1;MLEAF=0.5;MQ=55.46;MQRankSum=12.772;QD=36.54;ReadPosRankSum=5.73;SOR=0.198 GT:AD:DP:GQ:PL 0/1:77,644:721:99:26370,0,1157 21 46011987 rs201334923 A G 916.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.872;ClippingRankSum=0;DB;DP=452;ExcessHet=3.0103;FS=10.806;MLEAC=1;MLEAF=0.5;MQ=48.18;MQRankSum=-13.393;QD=2.03;ReadPosRankSum=-2.543;SOR=1.595 GT:AD:DP:GQ:PL 0/1:379,73:452:99:945,0,9700 21 46012160 rs62220887 G C 5048.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.401;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=59.867;MLEAC=1;MLEAF=0.5;MQ=34.91;MQRankSum=-2.144;QD=18.23;ReadPosRankSum=-0.285;SOR=0.493 GT:AD:DP:GQ:PL 0/1:139,138:295:99:5077,0,4632 21 46012181 rs201732843 C T 5193.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.49;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=55.573;MLEAC=1;MLEAF=0.5;MQ=33.92;MQRankSum=1.219;QD=23.4;ReadPosRankSum=2.828;SOR=0.345 GT:AD:DP:GQ:PL 0/1:84,138:222:99:5222,0,3442 21 46012182 rs233309 G A 5818.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-8.313;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=42.041;MLEAC=1;MLEAF=0.5;MQ=33.85;MQRankSum=0.609;QD=25.75;ReadPosRankSum=1.818;SOR=0.114 GT:AD:DP:GQ:PL 0/1:79,147:226:99:5847,0,2977 21 46012240 rs543542 A G 6584.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.83;QD=30.07;SOR=1.189 GT:AD:DP:GQ:PL 1/1:0,219:219:99:6613,657,0 21 46020527 rs1211103 C T 3375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.747;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.5;MQ=58.47;MQRankSum=0.99;QD=12.19;ReadPosRankSum=1.727;SOR=0.534 GT:AD:DP:GQ:PL 0/1:147,130:277:99:3404,0,4062 21 46020536 rs512211 T C 219.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.109;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=34.521;MLEAC=1;MLEAF=0.5;MQ=57.28;MQRankSum=-8.729;QD=0.75;ReadPosRankSum=-4.764;SOR=4.954 GT:AD:DP:GQ:PGT:PID:PL 0/1:272,21:293:99:0|1:46020536_T_C:248,0,11401 21 46020542 rs512214 T C 377.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.037;ClippingRankSum=0;DB;DP=311;ExcessHet=3.0103;FS=46.722;MLEAC=1;MLEAF=0.5;MQ=56.1;MQRankSum=-10.363;QD=1.22;ReadPosRankSum=-6.723;SOR=4.555 GT:AD:DP:GQ:PGT:PID:PL 0/1:276,34:310:99:0|1:46020536_T_C:406,0,11491 21 46020567 rs200384147 G A 3315.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0;DB;DP=375;ExcessHet=3.0103;FS=15.504;MLEAC=1;MLEAF=0.5;MQ=52.94;MQRankSum=4.657;QD=8.87;ReadPosRankSum=2.345;SOR=0.322 GT:AD:DP:GQ:PL 0/1:226,148:374:99:3344,0,6282 21 46020725 . G A 1347.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=11.449;ClippingRankSum=0;DP=677;ExcessHet=3.0103;FS=4.305;MLEAC=1;MLEAF=0.5;MQ=40.44;MQRankSum=-3.014;QD=1.99;ReadPosRankSum=-2.895;SOR=1.088 GT:AD:DP:GQ:PL 0/1:598,79:677:99:1376,0,14511 21 46020742 rs62220888 C G 3862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=15.384;ClippingRankSum=0;DB;DP=658;ExcessHet=3.0103;FS=29.018;MLEAC=1;MLEAF=0.5;MQ=40.96;MQRankSum=-5.289;QD=5.87;ReadPosRankSum=-2.034;SOR=1.978 GT:AD:DP:GQ:PL 0/1:524,134:658:99:3891,0,23442 21 46020752 rs371276303 T C 1307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=13.399;ClippingRankSum=0;DB;DP=649;ExcessHet=3.0103;FS=15.404;MLEAC=1;MLEAF=0.5;MQ=41.37;MQRankSum=-4.739;QD=2.02;ReadPosRankSum=-1.028;SOR=1.911 GT:AD:DP:GQ:PL 0/1:568,81:649:99:1336,0,30585 21 46020867 rs944419 A G 13709.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.47;ClippingRankSum=0;DB;DP=874;ExcessHet=3.0103;FS=1.15;MLEAC=1;MLEAF=0.5;MQ=54.5;MQRankSum=-6.222;QD=15.74;ReadPosRankSum=-1.426;SOR=0.807 GT:AD:DP:GQ:PL 0/1:308,563:871:99:13738,0,6191 21 46021088 rs388827 C T 3476.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.238;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=29.998;MLEAC=1;MLEAF=0.5;MQ=42.53;MQRankSum=1.539;QD=10.9;ReadPosRankSum=-1.278;SOR=0.864 GT:AD:DP:GQ:PL 0/1:187,132:319:99:3505,0,5846 21 46021179 rs363877 C A 8504.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0;DB;DP=509;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=56;MQRankSum=1.779;QD=16.81;ReadPosRankSum=1.143;SOR=0.644 GT:AD:DP:GQ:PL 0/1:278,228:506:99:8533,0,12608 21 46021205 rs389167 C T 9020.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0;DB;DP=580;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.68;MQRankSum=1.327;QD=15.74;ReadPosRankSum=1.518;SOR=0.646 GT:AD:DP:GQ:PL 0/1:323,250:577:99:9049,0,13540 21 46021370 rs437149 T C 9270.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0;DB;DP=505;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.59;MQRankSum=-7.523;QD=18.47;ReadPosRankSum=1.842;SOR=0.655 GT:AD:DP:GQ:PGT:PID:PL 0/1:260,242:502:99:0|1:46021370_T_C:9299,0,9767 21 46021390 rs446817 G C 9639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=548;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=58.37;MQRankSum=-8.772;QD=17.69;ReadPosRankSum=2.028;SOR=0.625 GT:AD:DP:GQ:PGT:PID:PL 0/1:280,265:545:99:0|1:46021370_T_C:9668,0,10226 21 46021481 rs437334 T C 12265.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.737;ClippingRankSum=0;DB;DP=630;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=58.58;MQRankSum=-8.474;QD=19.5;ReadPosRankSum=2.398;SOR=0.734 GT:AD:DP:GQ:PL 0/1:306,323:629:99:12294,0,15164 21 46021494 rs369720 A G 11866.8 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.592;ClippingRankSum=0;DB;DP=595;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=58.59;MQRankSum=-8.616;QD=20.18;ReadPosRankSum=1.776;SOR=0.755 GT:AD:DP:GQ:PL 0/1:285,303:588:99:11895,0,14764 21 46021607 rs370092 A G 4520.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.34;ReadPosRankSum=1.453;SOR=0.684 GT:AD:DP:GQ:PL 0/1:167,172:339:99:4549,0,4438 21 46032094 rs411254 A G 6052.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.36;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6081,579,0 21 46032768 rs116506540 C T 4742.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.898;ClippingRankSum=0;DB;DP=374;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=1.609;SOR=0.851 GT:AD:DP:GQ:PL 0/1:187,186:373:99:4771,0,4586 21 46047322 rs62220925 G A 9511.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.801;ClippingRankSum=0;DB;DP=668;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.5;MQ=56.08;MQRankSum=-15.52;QD=14.26;ReadPosRankSum=1.048;SOR=0.85 GT:AD:DP:GQ:PL 0/1:390,277:667:99:9540,0,15631 21 46047348 rs62220926 C T 9648.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=6.444;ClippingRankSum=0;DB;DP=611;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.5;MQ=54.68;MQRankSum=-20.222;QD=15.82;ReadPosRankSum=-0.686;SOR=0.64 GT:AD:DP:GQ:PGT:PID:PL 0/1:363,247:610:99:0|1:46047348_C_T:9677,0,20467 21 46047354 rs62220927 A G 9477.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.852;ClippingRankSum=0;DB;DP=615;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.5;MQ=54.51;MQRankSum=-20.928;QD=15.44;ReadPosRankSum=-1.316;SOR=0.606 GT:AD:DP:GQ:PGT:PID:PL 0/1:365,249:614:99:0|1:46047348_C_T:9506,0,20322 21 46047418 rs8126553 C T 8314.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.948;ClippingRankSum=0;DB;DP=638;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.5;MQ=56.64;MQRankSum=-13.267;QD=13.05;ReadPosRankSum=0.463;SOR=0.56 GT:AD:DP:GQ:PL 0/1:360,277:637:99:8343,0,15490 21 46047971 rs463217 T C 4012.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=296;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.74;MQRankSum=-2.29;QD=13.56;ReadPosRankSum=1.748;SOR=0.72 GT:AD:DP:GQ:PL 0/1:137,159:296:99:4041,0,3510 21 46057391 rs9306108 A G 8117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.396;ClippingRankSum=0;DB;DP=407;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.973;QD=19.95;ReadPosRankSum=0.758;SOR=0.728 GT:AD:DP:GQ:PGT:PID:PL 0/1:199,208:407:99:0|1:46057391_A_G:8146,0,9003 21 46057393 rs2838602 T A 8117.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.227;ClippingRankSum=0;DB;DP=408;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.5;MQ=59.98;MQRankSum=-0.971;QD=19.9;ReadPosRankSum=0.542;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 0/1:199,209:408:99:0|1:46057391_A_G:8146,0,9003 21 46057958 rs4818951 C T 4817.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0;DB;DP=489;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.5;MQ=58.07;MQRankSum=-1.248;QD=9.87;ReadPosRankSum=-0.478;SOR=0.643 GT:AD:DP:GQ:PL 0/1:280,208:488:99:4846,0,7318 21 46058060 rs13051517 C T 3450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.22;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=0.78;MLEAC=1;MLEAF=0.5;MQ=51.67;MQRankSum=-3.532;QD=8.83;ReadPosRankSum=2.04;SOR=0.741 GT:AD:DP:GQ:PL 0/1:231,160:391:99:3479,0,5916 21 46066764 rs4818952 C T 6562.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.007;ClippingRankSum=0;DB;DP=605;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.87;ReadPosRankSum=-1.16;SOR=0.89 GT:AD:DP:GQ:PL 0/1:310,294:604:99:6591,0,8493 21 46074202 rs9984726 A G 1843.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.157;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.933;SOR=0.645 GT:AD:DP:GQ:PL 0/1:71,82:153:99:1872,0,1538 21 46077946 rs9306111 A G 2589.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.734;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.98;SOR=0.693 GT:AD:DP:GQ:PL 0/1:131,110:241:99:2618,0,3061 21 46086377 rs2838622 A G 3415.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.001;ClippingRankSum=0;DB;DP=264;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.9;MQRankSum=-2.451;QD=12.94;ReadPosRankSum=0.592;SOR=0.718 GT:AD:DP:GQ:PL 0/1:131,133:264:99:3444,0,3343 21 46086718 rs7275281 G C 7810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.579;ClippingRankSum=0;DB;DP=428;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-1.038;QD=18.34;ReadPosRankSum=0.258;SOR=0.738 GT:AD:DP:GQ:PGT:PID:PL 0/1:222,204:426:99:0|1:46086718_G_C:7839,0,10805 21 46086719 rs63164960 A G 7810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.19;ClippingRankSum=0;DB;DP=422;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=-1.034;QD=18.6;ReadPosRankSum=-0.345;SOR=0.757 GT:AD:DP:GQ:PGT:PID:PL 0/1:218,202:420:99:0|1:46086718_G_C:7839,0,10805 21 46086757 rs7275298 G A 4040.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=0.375;MLEAC=1;MLEAF=0.5;MQ=59.77;MQRankSum=-3.53;QD=10.47;ReadPosRankSum=-1.322;SOR=0.66 GT:AD:DP:GQ:PL 0/1:212,174:386:99:4069,0,10657 21 46086758 rs13046903 C T 6658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.77;ClippingRankSum=0;DB;DP=386;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.5;MQ=59.76;MQRankSum=-3.495;QD=17.34;ReadPosRankSum=-1.369;SOR=0.632 GT:AD:DP:GQ:PL 0/1:209,175:384:99:6687,0,5147 21 46233863 rs13050872 G C 9389.77 PASS AC=2;AF=1;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,331:331:99:9418,991,0 21 46271452 rs235314 C T 8786.77 PASS AC=2;AF=1;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.1;SOR=0.834 GT:AD:DP:GQ:PL 1/1:0,302:302:99:8815,906,0 21 46311813 rs235326 A G 6580.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.19;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6609,650,0 21 46314907 rs235330 T A 2199.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.43;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2228,210,0 21 46320403 rs5030670 C T 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.724;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0.56;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-0.744;SOR=0.748 GT:AD:DP:GQ:PL 0/1:105,81:186:99:1881,0,2598 21 46330628 rs2280965 C T 1678.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.05;ReadPosRankSum=-0.166;SOR=0.646 GT:AD:DP:GQ:PL 0/1:91,76:167:99:1707,0,2425 21 46396659 rs3737075 G C 3225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.717;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=5.816;MLEAC=1;MLEAF=0.5;MQ=59.56;MQRankSum=-0.3;QD=12.5;ReadPosRankSum=-1.036;SOR=0.893 GT:AD:DP:GQ:PL 0/1:129,129:258:99:3254,0,2947 21 46602483 rs373179300 CT C 122.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.48;ReadPosRankSum=-0.8;SOR=0.505 GT:AD:DP:GQ:PL 0/1:66,17:93:99:160,0,1531 21 46641968 rs1051367 G A 5996.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=1.597 GT:AD:DP:GQ:PL 1/1:0,192:192:99:6025,574,0 21 46685560 rs72316840 ATCACAGAGGTTCCAGAGTCAGGGAGAACTGGCG A 4680.73 PASS AC=2;AF=1;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.01;SOR=0.856 GT:AD:DP:GQ:PL 1/1:0,104:104:99:4718,334,0 21 46705621 rs2297285 G A 4393.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=0.828 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4422,466,0 21 46875564 rs914230 T C 5832.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.86;QD=35.14;SOR=0.931 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5861,498,0 21 46876083 rs2236451 A G 3275.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.5;ReadPosRankSum=-0.049;SOR=0.695 GT:AD:DP:GQ:PL 0/1:173,139:312:99:3304,0,4420 21 46876580 rs8133886 C T 3371.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0;DB;DP=286;ExcessHet=3.0103;FS=4.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.79;ReadPosRankSum=0.011;SOR=0.958 GT:AD:DP:GQ:PL 0/1:148,138:286:99:3400,0,3918 21 46896303 rs2230687 C G 4289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=6.033;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.65;ReadPosRankSum=-1.726;SOR=0.607 GT:AD:DP:GQ:PGT:PID:PL 0/1:128,115:243:99:0|1:46896303_C_G:4318,0,4989 21 46896312 rs2230688 G T 4226.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.309;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=6.097;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.47;ReadPosRankSum=-0.74;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:131,111:242:99:0|1:46896303_C_G:4255,0,5050 21 46896381 rs17338853 G T 2443.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.363;SOR=1.033 GT:AD:DP:GQ:PL 0/1:89,101:190:99:2472,0,2216 21 46899842 rs1131100 C T 3857.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=1.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.07;ReadPosRankSum=-0.945;SOR=0.584 GT:AD:DP:GQ:PGT:PID:PL 0/1:145,111:256:99:0|1:46899842_C_T:3886,0,11156 21 46899857 rs1131101 C T 3643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.03;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.57;ReadPosRankSum=0.009;SOR=0.612 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,94:234:99:0|1:46899842_C_T:3672,0,11303 21 46899872 rs1131102 C A 3483.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.279;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.89;ReadPosRankSum=-0.995;SOR=0.658 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,94:234:99:0|1:46899842_C_T:3512,0,11294 21 46900410 rs2236467 C T 3777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0;DB;DP=391;ExcessHet=3.0103;FS=0.371;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=0.369;SOR=0.723 GT:AD:DP:GQ:PL 0/1:217,172:389:99:3806,0,5396 21 46910210 rs62000962 G A 1295.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.16;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=0.504;SOR=0.711 GT:AD:DP:GQ:PL 0/1:51,54:105:99:1324,0,1373 21 46924425 rs78227997 CGGCCCCCCA C 6539.73 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.98;QD=43.6;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,150:150:99:6577,454,0 21 46927489 rs12483761 A G 1239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.526;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0.74;MLEAC=1;MLEAF=0.5;MQ=61.38;MQRankSum=-4.197;QD=12.27;ReadPosRankSum=0.58;SOR=0.79 GT:AD:DP:GQ:PL 0/1:46,55:101:99:1268,0,1123 21 46929467 rs1050351 G A 1507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.47;SOR=0.532 GT:AD:DP:GQ:PL 0/1:58,63:121:99:1536,0,1485 21 46929522 rs3835286 GC G 907.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.301;SOR=0.346 GT:AD:DP:GQ:PL 0/1:32,37:69:99:945,0,779 21 46931109 rs12483377 G A 686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.58;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.36;MQRankSum=-1.319;QD=7.63;ReadPosRankSum=0.098;SOR=0.721 GT:AD:DP:GQ:PL 0/1:57,33:90:99:715,0,1409 21 46932328 rs7499 G A 2266.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.62;ClippingRankSum=0;DB;DP=180;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.34;SOR=0.827 GT:AD:DP:GQ:PL 0/1:86,93:179:99:2295,0,2027 21 46935077 rs11284347 TA T 1559.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.711;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.33;ReadPosRankSum=1.057;SOR=0.753 GT:AD:DP:GQ:PL 0/1:69,82:179:99:1597,0,1380 21 46951556 rs12659 A G 3425.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=10.159;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.06;ReadPosRankSum=0.883;SOR=0.756 GT:AD:DP:GQ:PL 0/1:144,140:284:99:3454,0,3576 21 46957794 rs1051266 T C 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.74;ReadPosRankSum=-0.343;SOR=0.831 GT:AD:DP:GQ:PL 0/1:79,76:155:99:1693,0,1809 21 47329352 rs2277812 T C 5534.77 PASS AC=2;AF=1;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.795 GT:AD:DP:GQ:PL 1/1:0,183:183:99:5563,549,0 21 47401760 rs7671 C G 610.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.519;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.41;ReadPosRankSum=-0.401;SOR=0.97 GT:AD:DP:GQ:PL 0/1:79,34:113:99:639,0,1877 21 47404397 rs3746993 A G 4044.77 PASS AC=2;AF=1;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.85;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,127:127:99:4073,381,0 21 47406421 rs741956 G A 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.592;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.75;SOR=0.693 GT:AD:DP:GQ:PL 0/1:62,62:124:99:1559,0,1542 21 47406612 rs754507 C A 5830.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.875;ClippingRankSum=0;DB;DP=243;ExcessHet=3.0103;FS=3.746;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=25.24;ReadPosRankSum=1.547;SOR=0.537 GT:AD:DP:GQ:PL 1/1:6,225:231:99:5859,521,0 21 47409503 rs2277814 A G 3160.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.99;SOR=1.157 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3189,306,0 21 47409580 rs34495634 C A 1931.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-0.157;SOR=0.509 GT:AD:DP:GQ:PL 0/1:85,82:167:99:1960,0,2078 21 47410931 rs1980982 T C 6127.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6156,621,0 21 47413929 rs2850174 G T 3508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.922;ClippingRankSum=0;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.85;ReadPosRankSum=-2.201;SOR=0.665 GT:AD:DP:GQ:PL 0/1:130,143:273:99:3537,0,3097 21 47417415 rs2276254 C A 1939.77 SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0;DB;DP=127;ExcessHet=3.0103;FS=60.195;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.27;ReadPosRankSum=2.11;SOR=0.579 GT:AD:DP:GQ:PL 0/1:50,77:127:99:1968,0,1147 21 47422639 rs2236485 A G 2364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.826;SOR=0.608 GT:AD:DP:GQ:PL 0/1:88,99:187:99:2393,0,2105 21 47423509 rs13051496 C T 3553.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.257;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.191;SOR=0.713 GT:AD:DP:GQ:PL 0/1:189,156:345:99:3582,0,4550 21 47536546 rs762438 C T 1178.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.447;ClippingRankSum=0;DB;DP=112;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=0.853;SOR=0.615 GT:AD:DP:GQ:PL 0/1:67,45:112:99:1207,0,1873 21 47538960 rs2839110 G A 3355.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.2;SOR=1.104 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3384,356,0 21 47540421 rs73159701 T C 1845.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.315;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=0.237;SOR=0.683 GT:AD:DP:GQ:PL 0/1:76,73:149:99:1874,0,1776 21 47542861 rs915786 A G 2950.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.1;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2979,314,0 21 47544838 rs9981981 G A 1788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.928;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=1.678;SOR=0.54 GT:AD:DP:GQ:PL 0/1:83,84:167:99:1817,0,2114 21 47545369 rs149954350 A AC 1546.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.471;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=4.748;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.67;ReadPosRankSum=0.471;SOR=1.054 GT:AD:DP:GQ:PL 0/1:93,67:160:99:1584,0,2349 21 47545768 rs1042917 G A 2419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=8.52;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=0.641;SOR=0.524 GT:AD:DP:GQ:PL 0/1:122,102:224:99:2448,0,3131 21 47545823 rs13052956 G A 3915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.192;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=3.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.88;ReadPosRankSum=-1.769;SOR=0.475 GT:AD:DP:GQ:PGT:PID:PL 0/1:117,102:219:99:0|1:47545823_G_A:3944,0,4636 21 47545826 rs13046639 C T 3921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.07;ReadPosRankSum=-1.601;SOR=0.6 GT:AD:DP:GQ:PGT:PID:PL 0/1:116,101:217:99:0|1:47545823_G_A:3950,0,4583 21 47545913 rs2839114 G A 3527.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-5.804;ClippingRankSum=0;DB;DP=352;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=0.258;SOR=0.554 GT:AD:DP:GQ:PL 0/1:183,169:352:99:3556,0,4863 21 47556809 rs1047209 C T 2381.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.853;ClippingRankSum=0;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-1.587;SOR=0.693 GT:AD:DP:GQ:PL 0/1:132,102:234:99:2410,0,3091 21 47557222 rs10432965 G A 871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.451;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.362;SOR=0.741 GT:AD:DP:GQ:PL 0/1:50,38:88:99:900,0,1237 21 47558473 rs1047179 G C 2077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.292;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=2.058;SOR=0.733 GT:AD:DP:GQ:PL 0/1:64,88:152:99:2106,0,1560 21 47575372 rs2277820 C T 921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=0.301;SOR=0.606 GT:AD:DP:GQ:PL 0/1:42,42:84:99:950,0,1013 21 47581866 rs149481630 G A 3690.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.687;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.83;ReadPosRankSum=1.516;SOR=0.692 GT:AD:DP:GQ:PL 0/1:153,159:312:99:3719,0,3893 21 47614443 rs2254522 A G 2586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.436;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.06;ReadPosRankSum=0.256;SOR=0.605 GT:AD:DP:GQ:PL 0/1:89,109:198:99:2615,0,1964 21 47614469 rs2254524 A C 2523.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.21;ReadPosRankSum=0.302;SOR=0.787 GT:AD:DP:GQ:PL 0/1:82,109:191:99:2552,0,1895 21 47635713 rs11701729 G A 655.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.122;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.61;ReadPosRankSum=0.891;SOR=1.038 GT:AD:DP:GQ:PL 0/1:26,26:52:99:684,0,576 21 47639492 rs2277826 C G 1130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.498;SOR=0.525 GT:AD:DP:GQ:PL 0/1:42,53:95:99:1159,0,950 21 47647618 rs10550493 GAA G 1040.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.054;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.5;MQ=60.45;MQRankSum=1.895;QD=13.17;ReadPosRankSum=1.155;SOR=0.481 GT:AD:DP:GQ:PL 0/1:42,37:91:99:1078,0,1353 21 47656800 rs150410111 C T 1196.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0;DB;DP=111;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.375;SOR=0.601 GT:AD:DP:GQ:PL 0/1:58,53:111:99:1225,0,1400 21 47665116 rs369793080 GAAGA G 1402.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.878;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.5;MQ=60.69;MQRankSum=2.717;QD=16.31;ReadPosRankSum=0.351;SOR=1.143 GT:AD:DP:GQ:PL 0/1:46,40:86:99:1440,0,2567 21 47676711 rs2839173 G A 2229.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.94;ReadPosRankSum=-1.483;SOR=0.688 GT:AD:DP:GQ:PL 0/1:75,85:160:99:2258,0,2140 21 47685939 rs2839181 A G 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.53;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=0.543;SOR=0.553 GT:AD:DP:GQ:PL 0/1:93,102:195:99:2670,0,2113 21 47707050 rs61182475 T A 2049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.31;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.1;ReadPosRankSum=-1.524;SOR=1.015 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,53:102:99:0|1:47707050_T_A:2078,0,2909 21 47707054 rs13049893 C T 1965.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.06;ReadPosRankSum=-0.697;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 0/1:49,49:98:99:0|1:47707050_T_A:1994,0,2915 21 47711229 rs2276257 A G 1614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.295;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-1.004;SOR=0.787 GT:AD:DP:GQ:PL 0/1:69,65:134:99:1643,0,1718 21 47721985 rs71318063 A ATGG 2386.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=6.274;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.538;QD=10.61;ReadPosRankSum=1.363;SOR=0.741 GT:AD:DP:GQ:PL 0/1:125,100:232:99:2424,0,4991 21 47722391 rs1556337 A G 1010.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.99;ReadPosRankSum=-0.15;SOR=0.706 GT:AD:DP:GQ:PL 0/1:47,45:92:99:1039,0,1055 21 47731495 rs13049522 G A 962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0;DB;DP=67;ExcessHet=3.0103;FS=5.174;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.59;ReadPosRankSum=-1.501;SOR=1.402 GT:AD:DP:GQ:PL 0/1:27,39:66:99:991,0,661 21 47734659 rs13047478 G A 2071.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.43;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.79;ReadPosRankSum=1.295;SOR=0.799 GT:AD:DP:GQ:PL 0/1:81,81:162:99:2100,0,2105 21 47766139 rs9982233 T C 1077.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.709;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.68;ReadPosRankSum=0.925;SOR=0.662 GT:AD:DP:GQ:PL 0/1:40,45:85:99:1106,0,907 21 47773177 rs2249060 C T 1691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.701;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=0.022;SOR=0.748 GT:AD:DP:GQ:PL 0/1:51,71:122:99:1720,0,1293 21 47777063 rs2839223 G A 1008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.09;ReadPosRankSum=-0.592;SOR=0.706 GT:AD:DP:GQ:PL 0/1:55,45:100:99:1037,0,1494 21 47783796 rs8131546 T C 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.49;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.06;ReadPosRankSum=-1.308;SOR=0.759 GT:AD:DP:GQ:PL 0/1:102,81:183:99:1869,0,2411 21 47786494 rs2839226 C T 1120.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.1;ReadPosRankSum=-1.849;SOR=0.767 GT:AD:DP:GQ:PL 0/1:54,47:101:99:1149,0,1468 21 47786524 rs2839227 A G 1995.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.15;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.245;SOR=0.684 GT:AD:DP:GQ:PL 0/1:64,80:144:99:2024,0,1413 21 47786817 rs2839228 C G 2039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=3.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.17;ReadPosRankSum=-0.502;SOR=0.446 GT:AD:DP:GQ:PL 0/1:70,74:144:99:2068,0,1894 21 47787002 rs6518289 T C 1704.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.666;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.46;ReadPosRankSum=0.419;SOR=0.689 GT:AD:DP:GQ:PL 0/1:89,74:163:99:1733,0,1911 21 47808679 rs7279204 C T 2285.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0;DB;DP=207;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.527;SOR=0.852 GT:AD:DP:GQ:PL 0/1:106,99:205:99:2314,0,2723 21 47821588 rs6518291 A G 1357.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.491;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.21;ReadPosRankSum=-0.756;SOR=0.697 GT:AD:DP:GQ:PL 0/1:77,56:133:99:1386,0,1810 21 47850405 rs2839257 C T 950.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.437;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.5;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.99;ReadPosRankSum=-0.308;SOR=0.854 GT:AD:DP:GQ:PL 0/1:73,46:119:99:979,0,2031 21 47850484 rs2070426 G C 1715.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=-0.077;SOR=0.749 GT:AD:DP:GQ:PL 0/1:118,81:199:99:1744,0,2970 21 47851753 rs2073376 A G 2360.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=6.384;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.49;ReadPosRankSum=1.341;SOR=0.974 GT:AD:DP:GQ:PL 0/1:125,100:225:99:2389,0,3175 21 47851796 rs9983522 G A 2414.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0;DB;DP=231;ExcessHet=3.0103;FS=6.286;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.725;SOR=1.064 GT:AD:DP:GQ:PL 0/1:125,106:231:99:2443,0,3203 21 47855876 rs17371795 A G 1804.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.95;ReadPosRankSum=-2.073;SOR=0.723 GT:AD:DP:GQ:PL 0/1:76,75:151:99:1833,0,1843 21 47970581 rs2255397 G A 2493.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.97;ReadPosRankSum=0.905;SOR=0.728 GT:AD:DP:GQ:PL 0/1:160,118:278:99:2522,0,3789 21 47971539 rs2255526 G A 3715.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=1.384 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3744,385,0 21 47974582 rs1107065 A G 3904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.76;ClippingRankSum=0;DB;DP=327;ExcessHet=3.0103;FS=1.83;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=1.808;SOR=0.585 GT:AD:DP:GQ:PL 0/1:172,152:324:99:3933,0,4012 21 47978321 rs34920477 G GC 6213.73 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=36.99;SOR=1.048 GT:AD:DP:GQ:PL 1/1:0,168:168:99:6251,506,0 21 48022230 rs1051169 C G 3906.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3935,404,0 21 48063476 rs10854485 C G 2577.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2606,261,0 21 48064382 rs144321816 C T 2016.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.36;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=9.087;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.156;SOR=0.32 GT:AD:DP:GQ:PL 0/1:85,89:174:99:2045,0,2183 22 16266920 . C CAG 1225.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.46;ClippingRankSum=0;DP=433;ExcessHet=3.0103;FS=4.752;MLEAC=1;MLEAF=0.5;MQ=33.18;MQRankSum=-0.83;QD=2.84;ReadPosRankSum=-0.622;SOR=1.165 GT:AD:DP:GQ:PL 0/1:374,58:432:99:1263,0,15083 22 16269934 rs200723625 A G 167.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=3.288;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25;MQRankSum=0;QD=6.99;ReadPosRankSum=0;SOR=0.33 GT:AD:DP:GQ:PL 0/1:15,9:24:99:196,0,374 22 16279319 rs201944459 GCAAAAACGTATGTAATT G 1254.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.749;ClippingRankSum=0;DB;DP=1142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=39.8;MQRankSum=-2.745;QD=1.19;ReadPosRankSum=-0.848;SOR=0.705 GT:AD:DP:GQ:PL 0/1:951,102:1053:99:1292,0,38154 22 16449050 rs148001219 G A 2340.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.5;MQ=37.22;MQRankSum=0.707;QD=9.79;ReadPosRankSum=-0.34;SOR=0.709 GT:AD:DP:GQ:PL 0/1:130,109:239:99:2369,0,2998 22 16449539 rs199856986 A G 387.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0;DB;DP=237;ExcessHet=3.0103;FS=7.017;MLEAC=1;MLEAF=0.5;MQ=30.87;MQRankSum=-0.694;QD=1.64;ReadPosRankSum=-0.15;SOR=0.307 GT:AD:DP:GQ:PL 0/1:194,43:237:99:416,0,5042 22 16449784 rs200562384 C A 639.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.206;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=7.719;MLEAC=1;MLEAF=0.5;MQ=33.81;MQRankSum=-4.371;QD=3.72;ReadPosRankSum=-0.669;SOR=0.241 GT:AD:DP:GQ:PL 0/1:133,39:172:99:668,0,4176 22 17072483 rs2236639 A G 5921.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.22;QD=32.01;SOR=0.867 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5950,555,0 22 17073066 rs5747988 A G 8889.77 PASS AC=2;AF=1;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.94;QD=30.44;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,292:292:99:8918,876,0 22 17446991 rs4819925 C T 1606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.92;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.9;ReadPosRankSum=0.746;SOR=0.651 GT:AD:DP:GQ:PL 0/1:65,70:135:99:1635,0,1575 22 17469026 rs5992604 G A 1200.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=6.298;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=1.156;SOR=1.325 GT:AD:DP:GQ:PL 0/1:64,49:113:99:1229,0,1584 22 17469049 rs28502153 C A 982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=11.854;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-0.676;SOR=1.919 GT:AD:DP:GQ:PL 0/1:49,38:87:99:1011,0,1238 22 17488823 rs11378060 C CG 2697.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.57;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.93;MLEAC=1;MLEAF=0.5;MQ=60.13;MQRankSum=1.445;QD=16.45;ReadPosRankSum=0.092;SOR=0.853 GT:AD:DP:GQ:PL 0/1:83,81:164:99:2735,0,2734 22 17565974 rs917865 G C 2745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.686;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=0.484;SOR=0.652 GT:AD:DP:GQ:PL 0/1:109,114:223:99:2774,0,3003 22 17586471 rs2241046 C T 1116.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=-1.457;SOR=0.622 GT:AD:DP:GQ:PL 0/1:53,53:106:99:1145,0,1267 22 17589246 rs879576 G A 2234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.897;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.351;SOR=0.901 GT:AD:DP:GQ:PL 0/1:107,93:200:99:2263,0,2557 22 17590180 rs41323645 G A 3194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.787;ClippingRankSum=0;DB;DP=291;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.339;SOR=0.683 GT:AD:DP:GQ:PL 0/1:154,136:290:99:3223,0,4142 22 17600977 rs5994165 G A 4169.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0;DB;DP=340;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.695;SOR=0.839 GT:AD:DP:GQ:PL 0/1:167,171:338:99:4198,0,4512 22 17601466 rs75243280 T C 1587.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.802;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.07;ReadPosRankSum=1.32;SOR=0.586 GT:AD:DP:GQ:PL 0/1:105,70:175:99:1616,0,2488 22 17601748 rs9606620 C T 2829.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.1;ClippingRankSum=0;DB;DP=287;ExcessHet=3.0103;FS=3.243;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.07;ReadPosRankSum=-0.76;SOR=0.654 GT:AD:DP:GQ:PL 0/1:153,128:281:99:2858,0,4106 22 17630486 rs1034859 C A 2351.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0;DB;DP=233;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.131;SOR=0.741 GT:AD:DP:GQ:PL 0/1:129,102:231:99:2380,0,3367 22 17662699 rs58754958 A G 809.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.25;ReadPosRankSum=0.393;SOR=0.715 GT:AD:DP:GQ:PL 0/1:43,36:79:99:838,0,1146 22 17662793 rs7289170 A G 1298.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.192;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.92;ReadPosRankSum=-1.344;SOR=0.731 GT:AD:DP:GQ:PL 0/1:53,56:109:99:1327,0,1411 22 17662917 rs3764846 G C 940.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=0.852;SOR=0.889 GT:AD:DP:GQ:PL 0/1:56,45:101:99:969,0,1408 22 17690430 rs7289141 C G 2187.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.485;SOR=0.715 GT:AD:DP:GQ:PL 0/1:121,95:216:99:2216,0,3083 22 17978600 rs7284169 G C 3040.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3069,306,0 22 18027817 rs35190782 CT C 938.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.135;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.5;MQ=60.4;MQRankSum=0.848;QD=15.91;ReadPosRankSum=-1.201;SOR=1.025 GT:AD:DP:GQ:PL 0/1:15,44:82:99:949,0,131 22 18209613 rs4488761 A G 5601.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.12;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,186:186:99:5630,557,0 22 18222263 rs181390 A G 5646.77 PASS AC=2;AF=1;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=1.063 GT:AD:DP:GQ:PL 1/1:0,200:200:99:5675,599,0 22 18300240 rs5992854 T C 3007.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.924;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.41;ReadPosRankSum=-1.688;SOR=0.685 GT:AD:DP:GQ:PL 0/1:164,125:289:99:3036,0,4227 22 18300594 rs11704160 G A 3879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.023;ClippingRankSum=0;DB;DP=312;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.037;SOR=0.59 GT:AD:DP:GQ:PL 0/1:159,152:311:99:3908,0,4048 22 18300879 rs11704809 G A 2331.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.268;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=4.511;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-0.599;SOR=0.84 GT:AD:DP:GQ:PL 0/1:74,96:170:99:2360,0,1755 22 18301508 rs148613283 T C 3877.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=1.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=-0.779;SOR=0.609 GT:AD:DP:GQ:PL 0/1:141,155:296:99:3906,0,3519 22 18301693 rs8135914 T C 2018.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.119;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.91;ReadPosRankSum=-1;SOR=0.661 GT:AD:DP:GQ:PL 0/1:96,89:185:99:2047,0,2262 22 18354766 rs9617630 C T 1844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.102;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.138;SOR=0.511 GT:AD:DP:GQ:PL 0/1:83,78:161:99:1873,0,2047 22 18609493 rs145621219 G A 3228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=294;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.02;ReadPosRankSum=0.035;SOR=0.658 GT:AD:DP:GQ:PL 0/1:158,135:293:99:3257,0,4003 22 18650682 rs3180408 C T 3069.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=57.22;MQRankSum=-6.592;QD=9.9;ReadPosRankSum=0.303;SOR=0.671 GT:AD:DP:GQ:PL 0/1:167,143:310:99:3098,0,3961 22 18900669 rs383964 A G 4664.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.9;QD=31.52;SOR=1.516 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4693,443,0 22 18900750 rs372055 G A 7323.77 PASS AC=2;AF=1;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.83;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,254:254:99:7352,760,0 22 18901004 rs450046 C T 5929.77 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=1.144 GT:AD:DP:GQ:PL 1/1:0,195:195:99:5958,584,0 22 18904414 rs455072 A G 4646.77 PASS AC=2;AF=1;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.33;QD=29.79;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:4675,468,0 22 18907124 rs1076466 G A 2649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.656;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=59.66;MQRankSum=1.099;QD=11.67;ReadPosRankSum=-0.198;SOR=0.759 GT:AD:DP:GQ:PL 0/1:124,103:227:99:2678,0,3194 22 18908875 rs1808320 A G 1848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.505;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.5;MQ=59.22;MQRankSum=-3.847;QD=12.33;ReadPosRankSum=3.096;SOR=0.587 GT:AD:DP:GQ:PL 0/1:71,79:150:99:1877,0,1613 22 18912678 rs4819756 A G 3168.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=-0.172;SOR=0.626 GT:AD:DP:GQ:PL 0/1:123,139:262:99:3197,0,2881 22 18923745 rs2008720 G T 4225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.397;ClippingRankSum=0;DB;DP=339;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.03;MQRankSum=0.997;QD=12.47;ReadPosRankSum=1.371;SOR=0.68 GT:AD:DP:GQ:PL 0/1:168,171:339:99:4254,0,3999 22 19026613 rs2072123 A G 3754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.639;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=4.682;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.78;ReadPosRankSum=2.684;SOR=1.001 GT:AD:DP:GQ:PL 0/1:107,131:238:99:3783,0,2593 22 19119545 rs45604134 C T 3352.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.999;ClippingRankSum=0;DB;DP=269;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.302;SOR=0.661 GT:AD:DP:GQ:PL 0/1:127,142:269:99:3381,0,3585 22 19119686 rs1052756 C T 4419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-6.48;ClippingRankSum=0;DB;DP=393;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.3;ReadPosRankSum=-1.309;SOR=0.764 GT:AD:DP:GQ:PL 0/1:192,199:391:99:4448,0,5217 22 19119751 rs1052763 C T 3796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0;DB;DP=369;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.68;SOR=0.769 GT:AD:DP:GQ:PL 0/1:199,169:368:99:3825,0,4777 22 19119938 rs1052773 G A 2698.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.837;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.49;ReadPosRankSum=-1.54;SOR=0.783 GT:AD:DP:GQ:PL 0/1:115,101:216:99:2727,0,2928 22 19122665 rs2240111 C T 1479.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=-0.315;SOR=0.561 GT:AD:DP:GQ:PL 0/1:89,72:161:99:1508,0,2161 22 19132061 rs2298274 C T 4373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0;DB;DP=374;ExcessHet=3.0103;FS=1.21;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.739;SOR=0.629 GT:AD:DP:GQ:PL 0/1:185,189:374:99:4402,0,4422 22 19137658 rs34341950 G A 213.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.97;ReadPosRankSum=-0.867;SOR=0.818 GT:AD:DP:GQ:PL 0/1:28,15:43:99:242,0,600 22 19184095 rs1061325 T C 6413.77 PASS AC=2;AF=1;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6442,636,0 22 19189003 rs11386977 A AC 5320.73 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.59;QD=36.69;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,145:145:99:5358,439,0 22 19197896 rs698423 T C 6008.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6037,609,0 22 19751829 rs2301558 C T 3127.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.993;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.493;SOR=0.555 GT:AD:DP:GQ:PL 0/1:122,125:247:99:3156,0,2865 22 19766782 rs4819522 C T 1618.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.593;ClippingRankSum=0;DB;DP=159;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=0.304;SOR=0.843 GT:AD:DP:GQ:PL 0/1:91,68:159:99:1647,0,2204 22 19808769 rs5748449 C T 5109.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.71;SOR=1.338 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5138,514,0 22 19868218 rs1139793 A G 3252.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.04;SOR=0.97 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3281,335,0 22 19870831 rs2239893 C T 2024.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.71;ReadPosRankSum=-0.642;SOR=0.536 GT:AD:DP:GQ:PL 0/1:99,90:189:99:2053,0,2448 22 19907099 rs5748469 C A 1649.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.147;SOR=0.803 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,50:142:99:0|1:19907099_C_A:1678,0,3800 22 19907118 rs5748470 G A 1559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=0.005;SOR=0.844 GT:AD:DP:GQ:PGT:PID:PL 0/1:85,44:129:99:0|1:19907099_C_A:1588,0,3608 22 19950235 rs4633 C T 3429.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.554;SOR=0.639 GT:AD:DP:GQ:PL 0/1:131,148:279:99:3458,0,3190 22 19951207 rs4818 C G 2689.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.548;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.8;ReadPosRankSum=-2.8;SOR=0.734 GT:AD:DP:GQ:PL 0/1:120,108:228:99:2718,0,2970 22 19951271 rs4680 G A 2151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.596;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=-2.269;SOR=0.732 GT:AD:DP:GQ:PL 0/1:77,85:162:99:2180,0,2223 22 19956262 rs362204 G GC 1738.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.336;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=5.127;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=0;QD=8.69;ReadPosRankSum=0.755;SOR=0.424 GT:AD:DP:GQ:PL 0/1:124,76:202:99:1776,0,3170 22 19959473 rs165815 C T 4536.77 PASS AC=2;AF=1;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,162:162:99:4565,485,0 22 19968971 rs2073748 G A 4224.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.912;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=0.864;SOR=0.687 GT:AD:DP:GQ:PL 0/1:154,176:330:99:4253,0,4074 22 19969075 rs2073747 A G 3753.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.806;ClippingRankSum=0;DB;DP=321;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.125;SOR=0.764 GT:AD:DP:GQ:PL 0/1:172,149:321:99:3782,0,4204 22 19969106 rs2240717 A G 4039.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.797;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.227;SOR=0.871 GT:AD:DP:GQ:PL 0/1:178,159:337:99:4068,0,4344 22 20136263 rs175181 G A 2551.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.056;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.39;ReadPosRankSum=1.493;SOR=0.689 GT:AD:DP:GQ:PL 0/1:99,107:206:99:2580,0,2580 22 20307256 rs7235 G A 15867.8 PASS AC=2;AF=1;AN=2;DB;DP=523;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.64;QD=30.34;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,523:523:99:15896,1568,0 22 20378890 rs61384159 T TCTA 4885.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.727;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.5;MQ=51.68;MQRankSum=-15.237;QD=17.77;ReadPosRankSum=-0.702;SOR=0.629 GT:AD:DP:GQ:PL 0/1:149,126:275:99:4923,0,6591 22 20457060 rs200551182 C G 15502.8 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0;DB;DP=798;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.5;MQ=35.67;MQRankSum=-1.411;QD=19.43;ReadPosRankSum=1.313;SOR=0.527 GT:AD:DP:GQ:PL 0/1:171,627:798:99:15531,0,2547 22 20457204 rs141165655 G A 8387.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.73;ClippingRankSum=0;DB;DP=778;ExcessHet=3.0103;FS=8.481;MLEAC=1;MLEAF=0.5;MQ=36.16;MQRankSum=-3.476;QD=10.81;ReadPosRankSum=0.129;SOR=1.234 GT:AD:DP:GQ:PL 0/1:382,394:776:99:8416,0,8713 22 20457841 rs202034782 T C 1163.77 SNP_QD_filter;SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0;DB;DP=1270;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.5;MQ=38.77;MQRankSum=-3.652;QD=0.92;ReadPosRankSum=-0.937;SOR=0.777 GT:AD:DP:GQ:PL 0/1:1087,182:1269:99:1192,0,26281 22 20708685 rs5753493 T C 8799.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.46;SOR=1.411 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8828,789,0 22 20708949 rs67607046 CGGCGTCGCTAACGAGGTCGCCGCCCAG C 14895.7 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.882;ClippingRankSum=0;DB;DP=456;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.29;MQRankSum=1.713;QD=37.81;ReadPosRankSum=-1.634;SOR=0.846 GT:AD:DP:GQ:PL 1/1:2,392:394:99:14933,1154,0 22 20709562 rs11089437 G A 22550.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.81;ClippingRankSum=0;DB;DP=531;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.5;MQRankSum=2.331;QD=42.79;ReadPosRankSum=-0.685;SOR=0.26 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,526:527:99:1|1:20709562_G_A:22579,1578,0 22 20709574 rs12172372 A G 23101.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.693;ClippingRankSum=0;DB;DP=552;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.87;MQRankSum=2.456;QD=41.93;ReadPosRankSum=-0.59;SOR=0.329 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,550:551:99:1|1:20709562_G_A:23130,1625,0 22 20709735 rs11089440 T C 12731.8 PASS AC=2;AF=1;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.22;QD=31.83;SOR=1.106 GT:AD:DP:GQ:PL 1/1:0,400:400:99:12760,1197,0 22 20709840 rs10212022 G C 12059.8 PASS AC=2;AF=1;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.23;QD=32.33;SOR=0.742 GT:AD:DP:GQ:PL 1/1:0,373:373:99:12088,1118,0 22 20710219 rs62218177 C T 6358.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.454;ClippingRankSum=0;DB;DP=370;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.89;MQRankSum=-6.887;QD=38.31;ReadPosRankSum=4.51;SOR=0.771 GT:AD:DP:GQ:PL 1/1:11,155:167:99:6387,235,0 22 20710386 rs11089443 G T 16258.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0;DB;DP=676;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.7;MQRankSum=14.081;QD=24.19;ReadPosRankSum=8.954;SOR=0.734 GT:AD:DP:GQ:PL 1/1:82,590:672:99:16287,1476,0 22 20710559 rs11089444 C G 13340.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.551;ClippingRankSum=0;DB;DP=435;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.25;MQRankSum=-0.251;QD=30.74;ReadPosRankSum=0.09;SOR=0.8 GT:AD:DP:GQ:PL 1/1:4,430:434:99:13369,1251,0 22 20710637 . G C 5159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0;DP=526;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=56.03;MQRankSum=-5.155;QD=9.87;ReadPosRankSum=-1.656;SOR=0.722 GT:AD:DP:GQ:PL 0/1:292,231:523:99:5188,0,7307 22 20710645 rs12157668 T A 18711.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=3.243;ClippingRankSum=0;DB;DP=518;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.97;MQRankSum=0.952;QD=36.26;ReadPosRankSum=1.988;SOR=0.611 GT:AD:DP:GQ:PL 1/1:3,513:516:99:18740,1530,0 22 20718525 rs2277833 T C 5499.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=0.729;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=38.27;MQRankSum=1.215;QD=35.03;ReadPosRankSum=1.637;SOR=0.279 GT:AD:DP:GQ:PL 1/1:1,156:157:99:5528,440,0 22 20779768 rs874101 G C 3684.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.065;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.34;ReadPosRankSum=1.39;SOR=0.664 GT:AD:DP:GQ:PL 0/1:164,161:325:99:3713,0,3846 22 20779822 rs874100 G C 3736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.25;ReadPosRankSum=-2.497;SOR=0.552 GT:AD:DP:GQ:PL 0/1:135,147:282:99:3765,0,3605 22 20779946 rs759612 C G 10986.8 PASS AC=2;AF=1;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=44.84;SOR=0.718 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,245:245:99:1|1:20779946_C_G:11015,740,0 22 20779947 rs759611 G C 10986.8 PASS AC=2;AF=1;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.22;QD=45.03;SOR=0.693 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,244:244:99:1|1:20779946_C_G:11015,740,0 22 20779973 rs5844418 C CG 8031.73 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.24;QD=35.7;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,225:225:99:8069,680,0 22 20780024 rs5844421 G GC 9552.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=47.29;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,202:203:99:9581,647,0 22 20780029 rs370015834 G GC 10051.7 PASS AC=2;AF=1;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.97;SOR=0.987 GT:AD:DP:GQ:PL 1/1:0,214:214:99:10089,686,0 22 20780031 rs2329378 G C 9935.77 PASS AC=2;AF=1;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.16;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,220:222:99:9964,680,0 22 20780091 rs759610 C G 13173.8 PASS AC=2;AF=1;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.66;SOR=0.7 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,295:295:99:1|1:20780091_C_G:13202,908,0 22 20780097 rs759609 G C 13257.8 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.64;SOR=0.713 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,297:297:99:1|1:20780091_C_G:13286,915,0 22 21213380 rs1061063 C T 2228.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.38;SOR=2.194 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2257,189,0 22 21213416 rs1061064 A G 3578.77 PASS AC=2;AF=1;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.67;SOR=2.535 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3607,286,0 22 21329123 rs733455 A G 4390.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.67;SOR=0.963 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4419,444,0 22 21330787 rs7285694 C T 3572.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DB;DP=262;ExcessHet=3.0103;FS=2.715;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.64;ReadPosRankSum=-0.538;SOR=0.869 GT:AD:DP:GQ:PL 0/1:125,137:262:99:3601,0,3143 22 21331043 rs178269 A T 5282.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.35;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5311,537,0 22 21343982 rs138025454 TGGGGAGCCAGGGCGCAGGTAGAGGAGGTGAGGGGCAC T 571.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.5;MQ=67.95;MQRankSum=-1.197;QD=9.37;ReadPosRankSum=-0.978;SOR=0.401 GT:AD:DP:GQ:PL 0/1:35,26:61:99:609,0,764 22 21346485 rs112544 T C 2789.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.321 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2818,273,0 22 21348914 rs4822790 C T 1927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.654;ClippingRankSum=0;DB;DP=170;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.41;ReadPosRankSum=0.933;SOR=0.615 GT:AD:DP:GQ:PL 0/1:82,87:169:99:1956,0,2092 22 21354970 rs426938 C G 7063.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7092,685,0 22 21377301 rs1548411 C A 1290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.555;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=0.761;SOR=0.728 GT:AD:DP:GQ:PL 0/1:51,52:103:99:1319,0,1303 22 21377650 rs2277838 G A 1861.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=0.31;SOR=0.701 GT:AD:DP:GQ:PL 0/1:101,75:176:99:1890,0,2729 22 21385843 rs2072549 G A 2925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=6.944;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=1.988;SOR=0.76 GT:AD:DP:GQ:PL 0/1:125,121:246:99:2954,0,3097 22 21385985 rs402931 C T 2261.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=-2.334;SOR=0.63 GT:AD:DP:GQ:PL 0/1:112,98:210:99:2290,0,2928 22 21386112 rs2072551 C T 1639.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.234;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.921;SOR=0.874 GT:AD:DP:GQ:PL 0/1:88,68:156:99:1668,0,2212 22 21567334 . A G 548.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=27.177;MLEAC=1;MLEAF=0.5;MQ=28.46;MQRankSum=1.636;QD=21.11;ReadPosRankSum=0.153;SOR=2.564 GT:AD:DP:GQ:PL 0/1:5,21:26:66:577,0,66 22 21567434 . G A 101.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0;DP=24;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.5;MQ=23.96;MQRankSum=1.072;QD=4.24;ReadPosRankSum=0.084;SOR=0.105 GT:AD:DP:GQ:PL 0/1:17,7:24:99:130,0,415 22 21570296 rs3895597 A G 4110.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=37;QD=37.03;SOR=7.204 GT:AD:DP:GQ:PL 1/1:0,111:111:99:4139,334,0 22 21570340 rs438804 G A 6503.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=42.94;QD=30.11;SOR=1.322 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6532,646,0 22 21570373 rs55710139 C T 2294.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=8.158;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.5;MQ=43.34;MQRankSum=-10.128;QD=8.86;ReadPosRankSum=-0.026;SOR=0.784 GT:AD:DP:GQ:PL 0/1:172,87:259:99:2323,0,4211 22 21741331 rs199765166 T C 279.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=28.1;QD=27.98;SOR=4.804 GT:AD:DP:GQ:PL 1/1:0,10:10:30:308,30,0 22 21742598 . G A 257.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.766;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=25;MQRankSum=0;QD=3.53;ReadPosRankSum=-0.843;SOR=0.095 GT:AD:DP:GQ:PL 0/1:56,17:73:99:286,0,1445 22 21742684 rs200610234 C T 6329.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-6.278;ClippingRankSum=0;DB;DP=412;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.5;MQ=33.28;MQRankSum=-3.062;QD=15.44;ReadPosRankSum=0.714;SOR=0.562 GT:AD:DP:GQ:PL 0/1:124,286:410:99:6358,0,2460 22 21742819 rs200038694 G A 5873.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.685;ClippingRankSum=0;DB;DP=575;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.5;MQ=34.21;MQRankSum=-1.458;QD=10.22;ReadPosRankSum=-2.022;SOR=0.746 GT:AD:DP:GQ:PL 0/1:301,274:575:99:5902,0,6625 22 21797102 rs1210228 G C 2897.77 SNP_MQ_filter AC=2;AF=1;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.885;MLEAC=2;MLEAF=1;MQ=35.46;MQRankSum=0.562;QD=25.64;ReadPosRankSum=-2.208;SOR=0.328 GT:AD:DP:GQ:PL 1/1:5,108:113:99:2926,173,0 22 21800042 rs467181 T C 9702.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,318:318:99:9731,954,0 22 21800444 rs128477 T C 10206.8 PASS AC=2;AF=1;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,342:344:99:10235,1025,0 22 21822301 rs77868618 T G 132.03 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.05;QD=44.01;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,3:3:12:1|1:21822301_T_G:160,12,0 22 21822322 rs76311428 G A 198.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=32.29;QD=28.4;SOR=4.174 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,7:7:21:1|1:21822301_T_G:227,21,0 22 21822725 rs430214 T C 1980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.576;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.72;MQRankSum=1.484;QD=12.46;ReadPosRankSum=0.784;SOR=0.703 GT:AD:DP:GQ:PL 0/1:90,69:159:99:2009,0,2268 22 21823602 rs464965 A G 1537.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=35.11;QD=36.61;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1566,126,0 22 21984205 rs710177 A G 3606.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.223;ClippingRankSum=0;DB;DP=335;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=0.306;SOR=0.636 GT:AD:DP:GQ:PL 0/1:175,158:333:99:3635,0,4127 22 21988524 rs861854 C T 3363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=2.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.04;ReadPosRankSum=0.419;SOR=0.637 GT:AD:DP:GQ:PL 0/1:123,135:258:99:3392,0,3185 22 21988602 rs861853 C T 3265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.96;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.651;SOR=0.774 GT:AD:DP:GQ:PL 0/1:154,133:287:99:3294,0,4062 22 21991072 rs861852 T C 3539.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.192;SOR=0.85 GT:AD:DP:GQ:PL 0/1:116,149:265:99:3568,0,2605 22 22048862 rs5999098 C T 5114.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=1.567 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5143,497,0 22 22049783 rs12484060 C T 8961.77 PASS AC=2;AF=1;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.981 GT:AD:DP:GQ:PL 1/1:0,305:305:99:8990,913,0 22 22287862 rs2027789 G A 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.41;ReadPosRankSum=1.085;SOR=0.715 GT:AD:DP:GQ:PL 0/1:132,80:212:99:1600,0,3125 22 22287964 rs2027790 T C 869.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0;DB;DP=106;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.21;ReadPosRankSum=-0.722;SOR=0.595 GT:AD:DP:GQ:PL 0/1:63,43:106:99:898,0,1699 22 22311882 rs145256528 G A 106.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0;DB;DP=47;ExcessHet=3.0103;FS=44.476;MLEAC=1;MLEAF=0.5;MQ=27.23;MQRankSum=-1.739;QD=2.27;ReadPosRankSum=-1.144;SOR=4.606 GT:AD:DP:GQ:PL 0/1:38,9:47:99:135,0,1052 22 22319757 rs71197632 AG A 2038.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.341;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.22;MQRankSum=1.051;QD=20.8;ReadPosRankSum=0.967;SOR=0.737 GT:AD:DP:GQ:PL 0/1:34,64:98:99:2076,0,971 22 22330082 rs239927 T C 2022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0;DB;DP=197;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.617;SOR=0.59 GT:AD:DP:GQ:PL 0/1:101,95:196:99:2051,0,2263 22 22599537 rs1320 G A 3913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.663;ClippingRankSum=0;DB;DP=382;ExcessHet=3.0103;FS=2.153;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.64;SOR=0.745 GT:AD:DP:GQ:PL 0/1:199,181:380:99:3942,0,5123 22 22599764 rs6001563 A G 2783.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.65;ReadPosRankSum=0.104;SOR=0.598 GT:AD:DP:GQ:PL 0/1:100,120:220:99:2812,0,2434 22 22842206 rs11109 T C 5374.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.825 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5403,524,0 22 22842957 rs2236729 T G 5885.77 PASS AC=2;AF=1;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.52;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5914,542,0 22 22843118 rs2236730 C T 4516.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=0.706 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4545,447,0 22 22868493 rs361666 G T 9308.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.97;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,207:207:99:1|1:22868493_G_T:9337,635,0 22 22868497 rs361762 G C 9217.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.75;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,206:206:99:1|1:22868493_G_T:9246,626,0 22 22868773 rs361737 G A 12976.8 PASS AC=2;AF=1;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.72;QD=44.75;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,290:290:99:1|1:22868773_G_A:13005,885,0 22 22868776 rs362173 G A 13049.8 PASS AC=2;AF=1;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=55.71;QD=45.15;SOR=0.848 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,289:289:99:1|1:22868773_G_A:13078,894,0 22 22869123 rs362003 T C 7819.77 PASS AC=2;AF=1;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.55;QD=32.45;SOR=0.901 GT:AD:DP:GQ:PL 1/1:0,241:241:99:7848,723,0 22 22869209 rs362124 C G 9906.77 PASS AC=2;AF=1;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.23;SOR=0.729 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,224:224:99:1|1:22869209_C_G:9935,680,0 22 22869218 rs362132 T C 9841.77 PASS AC=2;AF=1;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.33;SOR=0.73 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,222:222:99:1|1:22869209_C_G:9870,680,0 22 22869538 rs361611 A G 8053.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.74;SOR=0.715 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,180:180:99:1|1:22869538_A_G:8082,548,0 22 22869545 rs361580 T G 8620.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.37;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,190:190:99:1|1:22869538_A_G:8649,584,0 22 22869548 rs362011 T C 8350.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.38;SOR=0.737 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,184:184:99:1|1:22869538_A_G:8379,566,0 22 22869649 rs361721 G C 6209.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.05;SOR=0.734 GT:AD:DP:GQ:PL 1/1:0,200:200:99:6238,599,0 22 22869742 rs361959 C A 5470.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.57;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5499,550,0 22 22890492 rs13604 G A 1921.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.773;SOR=0.481 GT:AD:DP:GQ:PL 0/1:83,81:164:99:1950,0,2226 22 22890752 rs17497512 A G 2788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.272;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.581;SOR=0.729 GT:AD:DP:GQ:PL 0/1:107,109:216:99:2817,0,2706 22 22890792 rs17497547 T C 2927.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.263;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.13;ReadPosRankSum=0.791;SOR=0.746 GT:AD:DP:GQ:PL 0/1:107,116:223:99:2956,0,2607 22 22891081 rs2072049 G T 1259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14;ReadPosRankSum=0.429;SOR=0.726 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1288,0,1059 22 22899234 rs1129172 A G 1840.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.569;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.606;SOR=0.768 GT:AD:DP:GQ:PL 0/1:94,81:175:99:1869,0,2179 22 22988811 rs4820514 A G 202.77 SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.864;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=40.578;MLEAC=1;MLEAF=0.5;MQ=54.66;MQRankSum=-4.164;QD=2.57;ReadPosRankSum=0.433;SOR=5.669 GT:AD:DP:GQ:PL 0/1:63,16:79:99:231,0,2640 22 22988824 rs144960876 T C 755.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.903;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=4.208;MLEAC=1;MLEAF=0.5;MQ=53.32;MQRankSum=-7.031;QD=7.06;ReadPosRankSum=-2.06;SOR=0.883 GT:AD:DP:GQ:PL 0/1:79,28:107:99:784,0,2228 22 22988864 rs143048497 G C 1296.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.999;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.27;MQRankSum=-10.722;QD=7.86;ReadPosRankSum=-3.759;SOR=0.736 GT:AD:DP:GQ:PL 0/1:109,56:165:99:1325,0,2851 22 22988911 rs9612135 G A 2744.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.03;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.5;MQ=52.19;MQRankSum=-15.532;QD=8.22;ReadPosRankSum=1.385;SOR=0.749 GT:AD:DP:GQ:PL 0/1:194,140:334:99:2773,0,4514 22 22989256 rs2904923 A G 3871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0;DB;DP=330;ExcessHet=3.0103;FS=5.707;MLEAC=1;MLEAF=0.5;MQ=58.87;MQRankSum=-5.836;QD=11.8;ReadPosRankSum=0.952;SOR=0.942 GT:AD:DP:GQ:PL 0/1:162,166:328:99:3900,0,3962 22 23492236 rs9612248 C T 1492.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0;DB;DP=114;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=0.336;SOR=0.804 GT:AD:DP:GQ:PL 0/1:50,64:114:99:1521,0,1153 22 23503170 rs5759612 A G 2597.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.181;ClippingRankSum=0;DB;DP=203;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-0.834;SOR=0.896 GT:AD:DP:GQ:PL 0/1:96,107:203:99:2626,0,2163 22 23503205 rs5759613 G C 1774.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.395;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.95;ReadPosRankSum=-0.372;SOR=0.787 GT:AD:DP:GQ:PL 0/1:65,72:137:99:1803,0,1722 22 23503756 rs737818 G A 1267.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.87;ReadPosRankSum=2.006;SOR=0.631 GT:AD:DP:GQ:PL 0/1:78,65:143:99:1296,0,1807 22 23627369 rs140504 A G 2424.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.754;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.94;ReadPosRankSum=-0.632;SOR=0.675 GT:AD:DP:GQ:PL 0/1:107,96:203:99:2453,0,2667 22 23637200 rs2239666 T C 1615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.24;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.7;ReadPosRankSum=0.153;SOR=0.516 GT:AD:DP:GQ:PL 0/1:85,66:151:99:1644,0,2002 22 23653880 rs180801 G A 1337.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.061;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=51.56;MQRankSum=3.567;QD=6.28;ReadPosRankSum=0.473;SOR=0.66 GT:AD:DP:GQ:PL 0/1:142,71:213:99:1366,0,3353 22 23653975 . T TCCGG 1428.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.461;ClippingRankSum=0;DP=311;ExcessHet=3.0103;FS=16.362;MLEAC=1;MLEAF=0.5;MQ=55.62;MQRankSum=-11.587;QD=4.88;ReadPosRankSum=-1.255;SOR=1.544 GT:AD:DP:GQ:PL 0/1:239,54:293:99:1466,0,11810 22 23655084 rs11558697 C T 1579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.5;MQ=53.17;MQRankSum=1.203;QD=12.74;ReadPosRankSum=1.742;SOR=0.566 GT:AD:DP:GQ:PL 0/1:55,69:124:99:1608,0,1337 22 23655219 rs180806 G A 1466.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=52.02;MQRankSum=1.877;QD=10.48;ReadPosRankSum=2.93;SOR=0.67 GT:AD:DP:GQ:PL 0/1:77,63:140:99:1495,0,1995 22 23656148 rs66569843 T G 1499.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.497;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.48;ReadPosRankSum=-0.325;SOR=1.086 GT:AD:DP:GQ:PL 0/1:34,57:91:99:1528,0,701 22 23915610 rs111903752 A T 3101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.995;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=0.761;SOR=0.713 GT:AD:DP:GQ:PL 0/1:121,129:250:99:3130,0,2783 22 24034288 rs738786 A G 7756.77 PASS AC=2;AF=1;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,258:258:99:7785,774,0 22 24035970 rs2070446 C T 4483.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.194 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4512,447,0 22 24038847 rs1007298 T C 3382.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3411,335,0 22 24108412 rs80027270 G A 4024.77 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.34;SOR=1.203 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4053,414,0 22 24109550 rs131444 T C 3153.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.32;SOR=1.436 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3182,312,0 22 24109774 rs179468 T G 2212.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.55;QD=31.61;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2241,210,0 22 24121378 rs738792 C T 5056.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.65;SOR=1.727 GT:AD:DP:GQ:PL 1/1:0,165:165:99:5085,494,0 22 24179922 rs3177243 G C 2359.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.246;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=0;QD=11.13;ReadPosRankSum=0.264;SOR=0.593 GT:AD:DP:GQ:PL 0/1:112,100:212:99:2388,0,2814 22 24224655 rs9608213 G A 5745.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.89;SOR=1.317 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,128:128:99:1|1:24224655_G_A:5774,388,0 22 24224659 rs9612499 C A 5745.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.54;SOR=1.288 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,129:129:99:1|1:24224655_G_A:5774,388,0 22 24300634 rs56104230 G T 538.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27.51;QD=29.93;SOR=5.892 GT:AD:DP:GQ:PL 1/1:0,18:18:54:567,54,0 22 24300660 rs74718778 G C 606.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=26.66;QD=37.92;SOR=5.67 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,16:16:48:1|1:24300660_G_C:635,48,0 22 24325047 rs149686121 C G 1661.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.67;QD=43.73;SOR=1.179 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,38:38:99:1|1:24325006_G_A:1690,114,0 22 24325095 rs74487784 A G 270.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=25.35;QD=27.08;SOR=4.804 GT:AD:DP:GQ:PL 1/1:0,10:10:30:299,30,0 22 24459438 rs762273 T C 4958.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=1.508 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4987,477,0 22 24492061 rs2236622 T C 4158.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=1.114 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4187,416,0 22 24579049 rs62231981 G A 2180.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.5;MQ=57.78;MQRankSum=-8.046;QD=8.05;ReadPosRankSum=2.659;SOR=0.604 GT:AD:DP:GQ:PL 0/1:159,112:271:99:2209,0,3867 22 24579157 rs200945728 G T 2937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.227;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=20.29;MLEAC=1;MLEAF=0.5;MQ=54.41;MQRankSum=-1.483;QD=10.8;ReadPosRankSum=-1.085;SOR=1.25 GT:AD:DP:GQ:PGT:PID:PL 0/1:186,86:272:99:0|1:24579157_G_T:2966,0,10601 22 24579158 rs201628954 A C 2937.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.362;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=21.003;MLEAC=1;MLEAF=0.5;MQ=54.14;MQRankSum=-1.421;QD=11.17;ReadPosRankSum=-1.852;SOR=1.426 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,83:263:99:0|1:24579157_G_T:2966,0,10601 22 24622648 rs2275984 T C 1078.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.098;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.23;ReadPosRankSum=2.426;SOR=0.9 GT:AD:DP:GQ:PL 0/1:80,51:131:99:1107,0,1943 22 24717518 rs3747113 G A 2653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0;DB;DP=199;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.47;ReadPosRankSum=-0.125;SOR=0.827 GT:AD:DP:GQ:PL 0/1:92,105:197:99:2682,0,2380 22 24717850 rs204710 A G 5180.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5209,512,0 22 24761467 rs204718 G A 4236.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4265,422,0 22 24836650 rs8192446 C T 2867.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=4.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.923;SOR=0.46 GT:AD:DP:GQ:PL 0/1:105,122:227:99:2896,0,2599 22 24837301 rs5751876 T C 3507.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.415;ClippingRankSum=0;DB;DP=310;ExcessHet=3.0103;FS=5.138;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.759;SOR=0.907 GT:AD:DP:GQ:PL 0/1:168,141:309:99:3536,0,4147 22 24891365 rs200677387 C G 2121.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.426;ClippingRankSum=0;DB;DP=153;ExcessHet=3.0103;FS=3.836;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.87;ReadPosRankSum=0.072;SOR=1.007 GT:AD:DP:GQ:PL 0/1:69,84:153:99:2150,0,1558 22 24944053 rs4822506 C T 2716.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=1.481 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2745,266,0 22 24964128 rs4597 T C 1264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.55;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.16;ReadPosRankSum=-1.439;SOR=0.606 GT:AD:DP:GQ:PL 0/1:51,53:104:99:1293,0,1265 22 25144912 rs11703684 C T 1111.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.62;ReadPosRankSum=0.177;SOR=0.527 GT:AD:DP:GQ:PL 0/1:75,54:129:99:1140,0,1826 22 25145453 rs1892723 C T 1856.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.44;SOR=0.865 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1885,183,0 22 25145471 rs1892722 A G 601.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0;DB;DP=52;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-1.876;SOR=1.258 GT:AD:DP:GQ:PL 0/1:27,25:52:99:630,0,745 22 25145753 rs1475853 G A 1611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.32;ReadPosRankSum=-0.517;SOR=0.783 GT:AD:DP:GQ:PL 0/1:97,76:173:99:1640,0,2288 22 25151890 rs143403523 CA C 1076.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.22;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.09;MQRankSum=0.991;QD=9.7;ReadPosRankSum=-1.237;SOR=0.628 GT:AD:DP:GQ:PL 0/1:54,57:111:99:1114,0,1149 22 25294369 rs2073201 G A 4289.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.23;ReadPosRankSum=2.24;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 0/1:133,116:249:99:0|1:25294369_G_A:4318,0,7459 22 25294376 rs2073202 C T 4290.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.862;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.95;ReadPosRankSum=0.648;SOR=0.836 GT:AD:DP:GQ:PGT:PID:PL 0/1:126,113:239:99:0|1:25294369_G_A:4319,0,7271 22 25301142 rs61742274 A G 1446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.82;SOR=0.62 GT:AD:DP:GQ:PL 0/1:77,68:145:99:1475,0,1671 22 25577688 rs763279 G A 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.061;ClippingRankSum=0;DB;DP=135;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.73;SOR=0.6 GT:AD:DP:GQ:PL 0/1:66,69:135:99:1539,0,1631 22 25577733 rs9612887 T C 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.889;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.18;ReadPosRankSum=-0.113;SOR=0.671 GT:AD:DP:GQ:PL 0/1:81,78:159:99:1806,0,1806 22 25601196 rs9608378 C G 6335.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.84;SOR=1.219 GT:AD:DP:GQ:PL 1/1:0,199:199:99:6364,597,0 22 25753231 rs133194 G A 1576.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.342;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.17;ReadPosRankSum=-3.291;SOR=1.007 GT:AD:DP:GQ:PL 0/1:104,68:172:99:1605,0,2566 22 26166900 rs3859866 G C 3976.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.41;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4005,419,0 22 26173661 rs5761170 T C 8131.77 PASS AC=2;AF=1;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.858 GT:AD:DP:GQ:PL 1/1:0,273:273:99:8160,819,0 22 26193982 rs738642 C G 6435.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.52;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,218:218:99:6464,653,0 22 26194045 rs738643 T C 6373.77 PASS AC=2;AF=1;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.37;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6402,651,0 22 26219605 rs4820658 G A 5699.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.84;SOR=0.935 GT:AD:DP:GQ:PL 1/1:0,191:191:99:5728,573,0 22 26239850 rs5761268 C A 5007.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.62;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5036,522,0 22 26247456 rs5996988 G A 3096.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.94;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3125,320,0 22 26343805 rs2072007 A G 2672.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.7;SOR=1.295 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2701,270,0 22 26690407 rs137204 T C 1907.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.065;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.26;ReadPosRankSum=-0.082;SOR=0.527 GT:AD:DP:GQ:PL 0/1:51,74:125:99:1936,0,1241 22 26695077 rs663048 G T 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.947;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.47;ReadPosRankSum=-0.292;SOR=0.887 GT:AD:DP:GQ:PL 0/1:142,88:230:99:1976,0,3491 22 26702015 rs1210894 A C 1793.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.624;SOR=0.702 GT:AD:DP:GQ:PL 0/1:100,81:181:99:1822,0,2449 22 26769464 rs5844691 G GA 523.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.52;ReadPosRankSum=-1.836;SOR=1.071 GT:AD:DP:GQ:PL 0/1:28,27:57:99:561,0,499 22 26829719 rs141256918 C T 3569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0;DB;DP=288;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.153;SOR=0.678 GT:AD:DP:GQ:PL 0/1:142,145:287:99:3598,0,3834 22 26830478 rs3788398 A G 5294.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.91;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,177:177:99:5323,531,0 22 26853905 rs1894704 C A 2916.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2945,294,0 22 26854441 rs1894706 G A 4693.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,157:157:99:4722,469,0 22 26859942 rs5752330 C T 6853.77 PASS AC=2;AF=1;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,228:228:99:6882,684,0 22 26860269 rs2014410 G C 2614.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.57;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.54;ReadPosRankSum=1.102;SOR=0.699 GT:AD:DP:GQ:PL 0/1:137,111:248:99:2643,0,3654 22 26862212 rs713998 T C 4408.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.9;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4437,472,0 22 26879946 rs66831137 GGAGGCGGCGCCCCGGGGGAGA G 5081.73 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.42;QD=44.19;SOR=2.407 GT:AD:DP:GQ:PL 1/1:0,115:115:99:5119,353,0 22 26884039 rs4820682 G A 4837.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4866,477,0 22 26895061 rs2157586 G A 4632.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.744;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=3.514;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.73;ReadPosRankSum=1.647;SOR=0.611 GT:AD:DP:GQ:PL 1/1:1,145:146:99:4661,427,0 22 26895337 rs1008530 G A 7543.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=0.787 GT:AD:DP:GQ:PL 1/1:0,243:243:99:7572,727,0 22 26936897 rs12169509 G A 3330.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=261;ExcessHet=3.0103;FS=7.575;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.81;ReadPosRankSum=0.85;SOR=0.591 GT:AD:DP:GQ:PL 0/1:128,132:260:99:3359,0,3293 22 26937321 rs17851532 G A 4986.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.164;ClippingRankSum=0;DB;DP=388;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-1.516;SOR=0.753 GT:AD:DP:GQ:PGT:PID:PL 0/1:189,197:386:99:0|1:26937321_G_A:5015,0,4636 22 26937327 rs4822735 C G 14087.8 PASS AC=2;AF=1;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.77;SOR=0.742 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,373:373:99:1|1:26937321_G_A:14116,1130,0 22 27021425 rs4276 A G 3915.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.35;SOR=1.152 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3944,387,0 22 27021457 rs5761637 T C 4898.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=1.003 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4927,479,0 22 28194933 rs71194738 T TTGC 5879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0;DB;DP=485;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.62;MQRankSum=0;QD=16.47;ReadPosRankSum=1.824;SOR=0.691 GT:AD:DP:GQ:PL 0/1:221,136:376:99:5908,0,8599 22 28195386 rs45589338 C A 4418.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.689;ClippingRankSum=0;DB;DP=429;ExcessHet=3.0103;FS=5.953;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.951;SOR=0.679 GT:AD:DP:GQ:PL 0/1:231,197:428:99:4447,0,5911 22 29075622 rs76130400 C T 245.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.047;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.17;MQRankSum=-13.2;QD=1.4;ReadPosRankSum=4.888;SOR=0.598 GT:AD:DP:GQ:PGT:PID:PL 0/1:158,18:176:99:0|1:29075622_C_T:274,0,6817 22 29075634 . T G 227.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.83;ClippingRankSum=0;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.23;MQRankSum=-13.426;QD=1.25;ReadPosRankSum=1.725;SOR=0.646 GT:AD:DP:GQ:PGT:PID:PL 0/1:164,18:182:99:0|1:29075622_C_T:256,0,7069 22 29075636 . G T 230.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.111;ClippingRankSum=0;DP=183;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.24;MQRankSum=-13.463;QD=1.26;ReadPosRankSum=1.437;SOR=0.658 GT:AD:DP:GQ:PGT:PID:PL 0/1:165,18:183:99:0|1:29075622_C_T:259,0,7047 22 29075651 rs180764192 G A 185.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.38;MQRankSum=-14.011;QD=0.94;ReadPosRankSum=-2.001;SOR=0.629 GT:AD:DP:GQ:PGT:PID:PL 0/1:180,18:198:99:0|1:29075622_C_T:214,0,7347 22 29446611 rs5997435 A C 3738.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.874;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=1.44;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.623;SOR=0.724 GT:AD:DP:GQ:PL 0/1:133,143:276:99:3767,0,3185 22 29456733 rs6005977 T C 4038.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4067,399,0 22 29469130 rs7292708 A C 3722.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.51;SOR=1.46 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3751,366,0 22 29517332 . C T 1625.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0;DP=132;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.549;SOR=0.481 GT:AD:DP:GQ:PL 0/1:66,66:132:99:1654,0,1558 22 29533499 rs35612970 G A 3218.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.088;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=4.352;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.3;ReadPosRankSum=0.938;SOR=0.871 GT:AD:DP:GQ:PL 0/1:113,129:242:99:3247,0,2809 22 29533572 rs34920087 C G 2620.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.44;ClippingRankSum=0;DB;DP=218;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.02;ReadPosRankSum=0.328;SOR=0.571 GT:AD:DP:GQ:PL 0/1:112,106:218:99:2649,0,2989 22 29656389 rs2231398 G T 2592.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=3.727;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=-0.627;SOR=0.94 GT:AD:DP:GQ:PL 0/1:126,101:227:99:2621,0,3399 22 29704125 rs11090564 C T 1283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=-0.67;SOR=0.763 GT:AD:DP:GQ:PL 0/1:58,58:116:99:1312,0,1505 22 29704662 rs56037813 C G 1830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.89;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=5.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=2.931;SOR=0.419 GT:AD:DP:GQ:PL 0/1:113,85:198:99:1859,0,2798 22 29707639 rs34777709 G GC 6993.73 PASS AC=2;AF=1;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=36.24;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,193:193:99:7031,596,0 22 29707827 rs112302060 G A 2189.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.73;ReadPosRankSum=0.26;SOR=0.839 GT:AD:DP:GQ:PL 0/1:86,86:172:99:2218,0,2303 22 29711251 rs2519485 T C 4108.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.93;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4137,426,0 22 29727866 rs174765 C T 3421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0;DB;DP=318;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.79;ReadPosRankSum=0.236;SOR=0.574 GT:AD:DP:GQ:PL 0/1:164,153:317:99:3450,0,3896 22 29727886 rs2857465 T C 9106.77 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.55;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,319:319:99:9135,948,0 22 29755888 rs2072051 T C 2228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.343;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.627;SOR=0.765 GT:AD:DP:GQ:PL 0/1:93,90:183:99:2257,0,2112 22 29835060 rs16987627 T C 3812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0;DB;DP=309;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=-0.908;QD=12.42;ReadPosRankSum=-1.224;SOR=0.705 GT:AD:DP:GQ:PL 0/1:146,161:307:99:3841,0,3398 22 29837537 rs3804076 T C 2379.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.943;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=5.233;MLEAC=1;MLEAF=0.5;MQ=59.88;MQRankSum=0.495;QD=11.17;ReadPosRankSum=-1.561;SOR=1.055 GT:AD:DP:GQ:PL 0/1:122,91:213:99:2408,0,3132 22 29837566 rs71324764 TTCC T 4752.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.618;ClippingRankSum=0;DB;DP=307;ExcessHet=3.0103;FS=5.454;MLEAC=1;MLEAF=0.5;MQ=59.96;MQRankSum=1.435;QD=15.63;ReadPosRankSum=1.84;SOR=0.991 GT:AD:DP:GQ:PL 0/1:177,127:304:99:4790,0,7324 22 29837884 rs12484086 C T 4432.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0;DB;DP=418;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=58.95;MQRankSum=3.871;QD=10.6;ReadPosRankSum=0.528;SOR=0.735 GT:AD:DP:GQ:PL 0/1:218,200:418:99:4461,0,5296 22 29885567 rs147489453 A AAAGTCCCCTGAGAAGGCC 12939.7 PASS AC=2;AF=1;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.77;QD=47.57;SOR=0.801 GT:AD:DP:GQ:PL 1/1:0,272:272:99:12977,901,0 22 29885861 rs165923 T C 13091.8 PASS AC=2;AF=1;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.37;QD=30.59;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,428:428:99:13120,1277,0 22 29886413 rs165625 A G 7762.77 PASS AC=2;AF=1;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=29.74;SOR=0.716 GT:AD:DP:GQ:PL 1/1:0,261:261:99:7791,782,0 22 29904519 rs2283859 T C 1053.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.958;SOR=0.472 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1082,0,1128 22 29908072 rs1049534 C T 1159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.18;ClippingRankSum=0;DB;DP=119;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.75;ReadPosRankSum=0.023;SOR=0.879 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1188,0,1555 22 29913272 rs737976 C T 3789.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.26;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3818,415,0 22 29957570 rs1058642 G A 1934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.319;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=1.051;SOR=0.66 GT:AD:DP:GQ:PL 0/1:68,80:148:99:1963,0,1901 22 30124614 rs140096 A T 1688.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.877 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,57:57:99:1|1:30124609_C_T:1717,171,0 22 30202774 rs737945 G C 4075.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,142:142:99:4104,426,0 22 30683285 rs5753058 C G 2856.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.555;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=4.723;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.23;ReadPosRankSum=0.318;SOR=1.022 GT:AD:DP:GQ:PL 0/1:115,101:216:99:2885,0,3272 22 30685364 rs5763932 G A 915.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.33;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.309;SOR=0.493 GT:AD:DP:GQ:PL 0/1:37,39:76:99:944,0,930 22 30700607 rs4823089 T G 3367.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.487;ClippingRankSum=0;DB;DP=265;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-1.061;SOR=0.758 GT:AD:DP:GQ:PL 0/1:127,138:265:99:3396,0,2971 22 30733111 rs2229807 C A 1758.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.28;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.31;ReadPosRankSum=-0.374;SOR=0.893 GT:AD:DP:GQ:PL 0/1:108,81:189:99:1787,0,2640 22 30762140 rs740223 G A 1868.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.53;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.53;ReadPosRankSum=-1.139;SOR=0.618 GT:AD:DP:GQ:PL 0/1:110,86:196:99:1897,0,2689 22 30765502 rs5749080 G A 1913.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=2.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.2;ReadPosRankSum=-1.701;SOR=0.731 GT:AD:DP:GQ:PL 0/1:115,93:208:99:1942,0,2610 22 30767729 rs1076298 A G 615.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.428;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=1.82;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.92;ReadPosRankSum=1.318;SOR=0.935 GT:AD:DP:GQ:PL 0/1:59,30:89:99:644,0,1381 22 30769901 rs4820838 G C 2971.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.799;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=12.267;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.12;ReadPosRankSum=-1.222;SOR=0.458 GT:AD:DP:GQ:PGT:PID:PL 0/1:86,78:164:99:0|1:30769901_G_C:3000,0,5023 22 30769906 rs4820839 T C 2952.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.359;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=10.738;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18;ReadPosRankSum=-0.109;SOR=0.39 GT:AD:DP:GQ:PGT:PID:PL 0/1:88,76:164:99:0|1:30769901_G_C:2981,0,5074 22 30771458 rs1002189 T C 1839.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.43;ReadPosRankSum=0.391;SOR=0.61 GT:AD:DP:GQ:PL 0/1:79,82:161:99:1868,0,1860 22 30771554 rs2015035 T G 5588.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.89;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5617,561,0 22 30772228 rs35246021 C CTT 414.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.523;ClippingRankSum=0;DB;DP=58;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=-1.616;SOR=0.99 GT:AD:DP:GQ:PL 0/1:30,19:57:99:452,0,861 22 30776095 rs5749088 C T 2902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.919;ClippingRankSum=0;DB;DP=267;ExcessHet=3.0103;FS=4.891;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11;ReadPosRankSum=0.476;SOR=0.907 GT:AD:DP:GQ:PL 0/1:131,133:264:99:2931,0,3445 22 30780503 rs41282469 G A 1122.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.21;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.69;ReadPosRankSum=-0.107;SOR=0.662 GT:AD:DP:GQ:PL 0/1:37,45:82:99:1151,0,900 22 30782089 rs5997629 A G 1911.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.922;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=4.705;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.87;ReadPosRankSum=-0.961;SOR=1.074 GT:AD:DP:GQ:PL 0/1:88,73:161:99:1940,0,2135 22 30793137 rs757660 G A 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=3.509;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.91;ReadPosRankSum=-0.964;SOR=1.073 GT:AD:DP:GQ:PL 0/1:62,50:112:99:1138,0,1621 22 30823196 rs5753130 T C 2014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0;DB;DP=176;ExcessHet=3.0103;FS=4.466;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.818;SOR=1.05 GT:AD:DP:GQ:PL 0/1:92,84:176:99:2043,0,2438 22 30856121 rs35764129 G A 2354.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=1.12;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.53;ReadPosRankSum=-1.19;SOR=0.782 GT:AD:DP:GQ:PL 0/1:96,92:188:99:2383,0,2606 22 30857373 rs2240345 A C 2510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0;DB;DP=166;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.13;ReadPosRankSum=-0.46;SOR=0.572 GT:AD:DP:GQ:PL 0/1:73,93:166:99:2539,0,1973 22 30857448 rs5749104 A G 3709.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.438;ClippingRankSum=0;DB;DP=315;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=0.507;SOR=0.709 GT:AD:DP:GQ:PL 0/1:159,156:315:99:3738,0,3774 22 30860830 rs2269961 C T 1028.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.141;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=1.185;SOR=0.468 GT:AD:DP:GQ:PL 0/1:63,46:109:99:1057,0,1550 22 30862400 rs1057995 T A 976.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0;DB;DP=143;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.83;ReadPosRankSum=-0.397;SOR=0.595 GT:AD:DP:GQ:PL 0/1:94,49:143:99:1005,0,2315 22 30864692 rs4820854 G A 1906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.106;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=6.147;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.98;ReadPosRankSum=-1.339;SOR=0.911 GT:AD:DP:GQ:PL 0/1:108,83:191:99:1935,0,2718 22 30888494 rs17738527 C T 647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.292;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.36;ReadPosRankSum=1.618;SOR=0.657 GT:AD:DP:GQ:PL 0/1:59,29:88:99:676,0,1510 22 30888527 rs17738540 C T 515.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.533;ClippingRankSum=0;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.46;ReadPosRankSum=0.286;SOR=0.634 GT:AD:DP:GQ:PL 0/1:38,23:61:99:544,0,978 22 30891250 rs9606738 T C 1086.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.304;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.63;ReadPosRankSum=-0.622;SOR=0.509 GT:AD:DP:GQ:PL 0/1:79,47:126:99:1115,0,1997 22 30891294 rs9606739 G C 1202.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.003;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=0.553;SOR=0.612 GT:AD:DP:GQ:PL 0/1:92,56:148:99:1231,0,2226 22 30901592 rs9608956 T C 1754.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=3.16;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.605;SOR=1.025 GT:AD:DP:GQ:PL 0/1:64,74:138:99:1783,0,1651 22 30921371 rs6518698 T C 3228.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-2.395;SOR=0.811 GT:AD:DP:GQ:PL 0/1:115,135:250:99:3257,0,2766 22 30927975 rs5749118 C T 3934.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3963,372,0 22 30934816 rs5753190 T C 2540.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.76;SOR=1.165 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2569,240,0 22 30934887 rs5753191 G A 695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0;DB;DP=85;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.19;ReadPosRankSum=-0.627;SOR=0.586 GT:AD:DP:GQ:PL 0/1:51,34:85:99:724,0,1273 22 30953295 rs2267161 C T 2084.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0;DB;DP=198;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.867;SOR=0.737 GT:AD:DP:GQ:PL 0/1:103,95:198:99:2113,0,2359 22 31006841 rs77763564 C T 1134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=2.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.62;ReadPosRankSum=0.611;SOR=0.437 GT:AD:DP:GQ:PL 0/1:72,46:118:99:1163,0,2026 22 31008867 rs35915865 T C 2044.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.083;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.11;ReadPosRankSum=0.315;SOR=0.64 GT:AD:DP:GQ:PL 0/1:100,84:184:99:2073,0,2443 22 31011610 rs1801198 G C 2239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.848;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.629;SOR=0.646 GT:AD:DP:GQ:PL 0/1:124,90:214:99:2268,0,3181 22 31018975 rs1131603 T C 2307.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.415;ClippingRankSum=0;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.49;ReadPosRankSum=-1.636;SOR=0.686 GT:AD:DP:GQ:PL 0/1:61,88:149:99:2336,0,1474 22 31019044 rs4820889 G A 1863.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.529;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=3.765;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.14;ReadPosRankSum=-1.174;SOR=0.746 GT:AD:DP:GQ:PL 0/1:137,92:229:99:1892,0,3014 22 31032920 rs5997714 A G 11153.8 PASS AC=2;AF=1;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=0.779 GT:AD:DP:GQ:PL 1/1:0,363:363:99:11182,1089,0 22 31266546 rs2301816 T C 5515.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=0.809 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5544,539,0 22 31491295 rs3205187 G C 1938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=8.695;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.59;ReadPosRankSum=0.73;SOR=1.263 GT:AD:DP:GQ:PL 0/1:100,83:183:99:1967,0,2517 22 31491332 rs5997872 C T 2013.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0;DB;DP=193;ExcessHet=3.0103;FS=7.114;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-0.644;SOR=1.01 GT:AD:DP:GQ:PL 0/1:100,93:193:99:2042,0,2423 22 31521404 rs2240432 G A 2923.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.504;ClippingRankSum=0;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.029;SOR=0.666 GT:AD:DP:GQ:PL 0/1:137,125:262:99:2952,0,3670 22 31521850 rs2240431 A C 3343.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.595;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=6.698;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.524;SOR=0.506 GT:AD:DP:GQ:PL 0/1:131,129:260:99:3372,0,3222 22 31741067 rs714909 G A 5334.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.02;SOR=0.74 GT:AD:DP:GQ:PL 1/1:0,172:172:99:5363,515,0 22 31843567 rs2273251 G C 4463.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.56;SOR=0.974 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4492,452,0 22 31971258 rs5753700 T C 6333.77 PASS AC=2;AF=1;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=29.19;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,217:217:99:6362,651,0 22 32002294 rs5753723 T C 1008.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=-1.215;SOR=0.675 GT:AD:DP:GQ:PL 0/1:52,49:101:99:1037,0,1241 22 32044166 rs34103525 C T 1303.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0;DB;DP=136;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.59;ReadPosRankSum=0.513;SOR=0.793 GT:AD:DP:GQ:PL 0/1:76,60:136:99:1332,0,1842 22 32211412 rs5749334 A C 2681.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.71;QD=29.47;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2710,268,0 22 32352791 rs1049583 G A 5578.77 PASS AC=2;AF=1;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.16;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5607,554,0 22 32482321 rs5998233 T G 996.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.31;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.12;ReadPosRankSum=0.549;SOR=0.435 GT:AD:DP:GQ:PL 0/1:33,43:76:99:1025,0,751 22 32547012 rs3888536 G A 1679.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.5;MQ=57.11;MQRankSum=-6.081;QD=11.2;ReadPosRankSum=-0.42;SOR=0.621 GT:AD:DP:GQ:PL 0/1:71,79:150:99:1708,0,1604 22 32554985 rs5998267 A G 4209.77 PASS AC=2;AF=1;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.03;SOR=0.886 GT:AD:DP:GQ:PL 1/1:0,145:145:99:4238,435,0 22 32586854 rs136467 C T 1820.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.432;ClippingRankSum=0;DB;DP=215;ExcessHet=3.0103;FS=12.077;MLEAC=1;MLEAF=0.5;MQ=56.4;MQRankSum=-9.731;QD=8.47;ReadPosRankSum=-0.941;SOR=0.99 GT:AD:DP:GQ:PL 0/1:142,73:215:99:1849,0,3787 22 32586875 rs136468 G A 2047.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=4.573;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=8.869;MLEAC=1;MLEAF=0.5;MQ=55.59;MQRankSum=-12.893;QD=9.52;ReadPosRankSum=-1.283;SOR=0.892 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,61:215:99:0|1:32586875_G_A:2076,0,7339 22 32586878 rs136469 A G 2047.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=8.421;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=8.85;MLEAC=1;MLEAF=0.5;MQ=55.53;MQRankSum=-13.086;QD=9.48;ReadPosRankSum=-1.495;SOR=1.023 GT:AD:DP:GQ:PGT:PID:PL 0/1:155,61:216:99:0|1:32586875_G_A:2076,0,7339 22 32586926 rs136470 T C 1757.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.111;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.5;MQ=54.37;MQRankSum=-14.876;QD=7.03;ReadPosRankSum=1.347;SOR=0.866 GT:AD:DP:GQ:PL 0/1:177,73:250:99:1786,0,4726 22 32587023 rs55974778 C G 4984.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.144;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.5;MQ=56.18;MQRankSum=-10.431;QD=14.79;ReadPosRankSum=0.693;SOR=0.637 GT:AD:DP:GQ:PGT:PID:PL 0/1:203,134:337:99:0|1:32587023_C_G:5013,0,9655 22 32587027 rs136472 G C 5081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.93;ClippingRankSum=0;DB;DP=341;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.5;MQ=56.29;MQRankSum=-10.455;QD=14.95;ReadPosRankSum=1.17;SOR=0.643 GT:AD:DP:GQ:PGT:PID:PL 0/1:202,138:340:99:0|1:32587023_C_G:5110,0,9644 22 32589023 rs136478 C T 3966.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0;DB;DP=331;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.994;QD=12.02;ReadPosRankSum=-1.066;SOR=0.876 GT:AD:DP:GQ:PL 0/1:165,165:330:99:3995,0,4360 22 32589034 rs136479 T C 4457.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.734;ClippingRankSum=0;DB;DP=332;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=-0.955;QD=13.47;ReadPosRankSum=-2.065;SOR=0.804 GT:AD:DP:GQ:PL 0/1:159,172:331:99:4486,0,3848 22 32590449 rs108211 G A 1667.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=1.92;MLEAC=1;MLEAF=0.5;MQ=59.95;MQRankSum=-1.049;QD=9.93;ReadPosRankSum=0.99;SOR=0.534 GT:AD:DP:GQ:PL 0/1:89,79:168:99:1696,0,2233 22 32754103 rs58637580 A C 3170.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.277;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=6.543;MLEAC=1;MLEAF=0.5;MQ=57.51;MQRankSum=-8.749;QD=11.53;ReadPosRankSum=0.764;SOR=1.069 GT:AD:DP:GQ:PL 0/1:148,127:275:99:3199,0,3753 22 32754230 rs57676160 A G 6847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.51;ClippingRankSum=0;DB;DP=377;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.5;MQ=57.74;MQRankSum=-10.111;QD=18.16;ReadPosRankSum=-0.554;SOR=0.766 GT:AD:DP:GQ:PGT:PID:PL 0/1:197,180:377:99:0|1:32754230_A_G:6876,0,7773 22 32754232 rs57606003 C T 6847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.029;ClippingRankSum=0;DB;DP=376;ExcessHet=3.0103;FS=3.266;MLEAC=1;MLEAF=0.5;MQ=57.75;MQRankSum=-10.004;QD=18.21;ReadPosRankSum=-0.086;SOR=0.755 GT:AD:DP:GQ:PGT:PID:PL 0/1:199,177:376:99:0|1:32754230_A_G:6876,0,7773 22 32754306 rs16987625 T C 4912.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.995;ClippingRankSum=0;DB;DP=354;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.5;MQ=59.92;MQRankSum=-1.61;QD=13.88;ReadPosRankSum=-0.094;SOR=0.732 GT:AD:DP:GQ:PL 0/1:164,190:354:99:4941,0,3788 22 32756407 rs5749408 A G 5162.77 SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=5.104;ClippingRankSum=0;DB;DP=399;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=54.23;MQRankSum=-15.236;QD=12.97;ReadPosRankSum=-0.062;SOR=0.698 GT:AD:DP:GQ:PL 0/1:210,188:398:99:5191,0,5004 22 32756555 rs136471 G C 4830.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.47;ClippingRankSum=0;DB;DP=430;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.7;MQRankSum=-1.886;QD=11.31;ReadPosRankSum=1.24;SOR=0.671 GT:AD:DP:GQ:PL 0/1:220,207:429:99:4859,0,5285 22 32756684 rs61729165 C A 219.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-5.112;ClippingRankSum=0;DB;DP=375;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.5;MQ=57.63;MQRankSum=-18.123;QD=0.59;ReadPosRankSum=1.913;SOR=0.621 GT:AD:DP:GQ:PL 0/1:318,56:374:99:248,0,8846 22 32756703 rs73166367 C T 401.77 SNP_QD_filter;SNP_MQRankSum_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-4.729;ClippingRankSum=0;DB;DP=362;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=57.62;MQRankSum=-17.721;QD=1.12;ReadPosRankSum=0.529;SOR=0.561 GT:AD:DP:GQ:PL 0/1:298,61:359:99:430,0,7837 22 32756744 rs2076035 A G 6890.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.86;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.5;MQ=58.03;MQRankSum=16.244;QD=23.52;ReadPosRankSum=-1.324;SOR=0.637 GT:AD:DP:GQ:PL 0/1:43,250:293:99:6919,0,297 22 32756830 rs67352955 CA C 1157.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.27;ClippingRankSum=0;DB;DP=140;ExcessHet=3.0103;FS=6.675;MLEAC=1;MLEAF=0.5;MQ=60.11;MQRankSum=1.451;QD=8.84;ReadPosRankSum=-1.621;SOR=1.241 GT:AD:DP:GQ:PL 0/1:68,63:134:99:1195,0,1595 22 32784051 rs11635 T C 630.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.227;ClippingRankSum=0;DB;DP=74;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.52;ReadPosRankSum=-1.532;SOR=0.96 GT:AD:DP:GQ:PL 0/1:46,28:74:99:659,0,1107 22 32791003 rs2072818 A C 4565.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.119 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4594,446,0 22 32795641 rs5749426 C T 2958.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.57;ReadPosRankSum=1.792;SOR=0.623 GT:AD:DP:GQ:PL 0/1:91,127:218:99:2987,0,2160 22 32811952 rs5998478 A G 2052.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=29.33;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2081,210,0 22 32828343 rs9609551 T C 1888.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.31;ReadPosRankSum=-0.08;SOR=0.727 GT:AD:DP:GQ:PL 0/1:85,82:167:99:1917,0,1967 22 32831711 rs5994570 C G 2629.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.458;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.761;SOR=0.666 GT:AD:DP:GQ:PL 0/1:76,105:181:99:2658,0,1779 22 32841700 . G GA 61.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.556;ClippingRankSum=0;DP=44;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.25;MQRankSum=1.146;QD=2.68;ReadPosRankSum=-0.046;SOR=0.839 GT:AD:DP:GQ:PL 0/1:15,8:28:99:99,0,250 22 32871383 rs8137714 T G 2656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.312;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=5.325;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.84;ReadPosRankSum=-1.508;SOR=1.062 GT:AD:DP:GQ:PL 0/1:93,99:192:99:2685,0,2270 22 32875190 rs11107 G A 1982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.008;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=-1.016;SOR=0.693 GT:AD:DP:GQ:PL 0/1:66,88:154:99:2011,0,1594 22 32887150 rs9726 C T 712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.425;SOR=0.705 GT:AD:DP:GQ:PL 0/1:37,33:70:99:741,0,924 22 32914312 rs150768274 C T 2942.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0;DB;DP=224;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=0;QD=13.2;ReadPosRankSum=-1.453;SOR=0.64 GT:AD:DP:GQ:PL 0/1:105,118:223:99:2971,0,2624 22 33670584 rs17722172 G A 1181.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.16;ReadPosRankSum=-0.888;SOR=0.5 GT:AD:DP:GQ:PL 0/1:75,54:129:99:1210,0,1923 22 34022284 rs86487 G A 2825.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.17;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2854,311,0 22 35463162 rs361863 A G 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.7;ClippingRankSum=0;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=-1.408;SOR=0.689 GT:AD:DP:GQ:PL 0/1:69,73:142:99:1693,0,1666 22 35463179 rs361668 T C 1785.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.108;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.915;SOR=0.718 GT:AD:DP:GQ:PL 0/1:78,79:157:99:1814,0,1768 22 35463249 rs362090 C T 1760.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.859;ClippingRankSum=0;DB;DP=157;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.22;ReadPosRankSum=1.627;SOR=0.608 GT:AD:DP:GQ:PL 0/1:76,81:157:99:1789,0,1884 22 35660875 rs1053593 G T 3480.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.8;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3509,339,0 22 35679951 rs2272789 T C 2218.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=0.976 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2247,234,0 22 35799542 rs713618 C T 5593.77 PASS AC=2;AF=1;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.991 GT:AD:DP:GQ:PL 1/1:0,189:189:99:5622,565,0 22 35947585 rs41279993 C A 1724.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.861;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.07;ReadPosRankSum=-1.43;SOR=0.457 GT:AD:DP:GQ:PL 0/1:57,75:132:99:1753,0,1524 22 36006923 rs35171458 G GC 4993.73 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.08;QD=36.99;SOR=1.129 GT:AD:DP:GQ:PL 1/1:0,135:135:99:5031,406,0 22 36007045 rs7292 G A 4153.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=31.23;SOR=1.095 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4182,399,0 22 36007075 rs7293 C T 3636.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=1.188 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3665,362,0 22 36122517 rs17723764 T C 2901.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.652;ClippingRankSum=0;DB;DP=208;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.09;ReadPosRankSum=-0.369;SOR=0.729 GT:AD:DP:GQ:PL 0/1:100,106:206:99:2930,0,2445 22 36123083 rs2076672 C T 2699.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=1.134;SOR=0.655 GT:AD:DP:GQ:PL 0/1:130,110:240:99:2728,0,3509 22 36424450 rs9607299 A C 7590.77 PASS AC=2;AF=1;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.73;SOR=1.058 GT:AD:DP:GQ:PL 1/1:0,247:247:99:7619,741,0 22 36537725 rs61731692 G A 3265.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0;DB;DP=258;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-0.7;SOR=0.71 GT:AD:DP:GQ:PL 0/1:123,135:258:99:3294,0,3115 22 36537893 rs3827346 A G 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.47;ReadPosRankSum=0.542;SOR=0.625 GT:AD:DP:GQ:PL 0/1:112,88:200:99:2123,0,2938 22 36556823 rs132653 G T 5395.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5424,539,0 22 36587202 rs6000172 G A 5266.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.972 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5295,528,0 22 36587223 rs6000173 G T 5242.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=0.829 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5271,513,0 22 36587279 rs6000174 A G 6222.77 PASS AC=2;AF=1;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,202:202:99:6251,605,0 22 36587486 rs2227167 A G 6476.77 PASS AC=2;AF=1;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.59;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,205:205:99:6505,615,0 22 36587511 rs2227168 C T 6281.77 PASS AC=2;AF=1;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.73;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,198:198:99:6310,594,0 22 36587845 rs3075364 A ACT 7963.73 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.12;QD=44.49;SOR=0.953 GT:AD:DP:GQ:PL 1/1:0,179:179:99:8001,539,0 22 36587952 rs2227169 C T 3146.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=1.519 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3175,306,0 22 36591380 rs2007468 A G 5751.77 PASS AC=2;AF=1;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.2;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,197:197:99:5780,590,0 22 36598049 rs80587 C G 10289.8 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.16;SOR=0.993 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,233:233:99:1|1:36598049_C_G:10318,707,0 22 36598058 rs132736 T C 10135.8 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.07;SOR=1.031 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,230:230:99:1|1:36598049_C_G:10164,692,0 22 36623731 rs132760 T C 8329.77 PASS AC=2;AF=1;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,268:268:99:8358,803,0 22 36657628 rs136163 T G 1836.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.229;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.609;MLEAC=1;MLEAF=0.5;MQ=59.91;MQRankSum=1.071;QD=12.76;ReadPosRankSum=-1.254;SOR=0.343 GT:AD:DP:GQ:PL 0/1:68,76:144:99:1865,0,1959 22 36661330 rs2239785 G A 1992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.311;SOR=0.847 GT:AD:DP:GQ:PL 0/1:103,81:184:99:2021,0,2763 22 36661536 rs136174 C A 2613.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.079;ClippingRankSum=0;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.99;ReadPosRankSum=-0.624;SOR=0.694 GT:AD:DP:GQ:PL 0/1:113,105:218:99:2642,0,2755 22 36661566 rs136175 G A 2564.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.7;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.972;SOR=0.666 GT:AD:DP:GQ:PL 0/1:108,100:208:99:2593,0,2650 22 36661646 rs136176 G A 2637.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0;DB;DP=214;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.38;ReadPosRankSum=2.006;SOR=0.571 GT:AD:DP:GQ:PL 0/1:106,107:213:99:2666,0,2563 22 36661842 rs136177 G A 2844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.473;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=5.117;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.52;ReadPosRankSum=0.912;SOR=1.01 GT:AD:DP:GQ:PL 0/1:126,121:247:99:2873,0,3296 22 36685292 rs139134727 G A 3094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.271;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.46;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.713;SOR=0.646 GT:AD:DP:GQ:PL 0/1:126,132:258:99:3123,0,2885 22 36691607 rs710181 A C 4203.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.007;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.24;ReadPosRankSum=1.605;SOR=0.287 GT:AD:DP:GQ:PL 1/1:1,138:139:99:4232,407,0 22 36708084 rs2413396 C T 5676.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=1.467 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5705,578,0 22 36710183 rs3752462 T C 6569.77 PASS AC=2;AF=1;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.36;SOR=1.044 GT:AD:DP:GQ:PL 1/1:0,203:203:99:6598,608,0 22 36897427 rs5756223 T C 1714.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.15;MQRankSum=1.39;QD=11.91;ReadPosRankSum=-0.254;SOR=0.73 GT:AD:DP:GQ:PL 0/1:70,74:144:99:1743,0,1640 22 36900271 rs2277841 T C 5748.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.129;ClippingRankSum=0;DB;DP=181;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=31.76;ReadPosRankSum=-0.715;SOR=0.75 GT:AD:DP:GQ:PL 1/1:2,179:181:99:5777,494,0 22 36900806 rs760718 A G 4554.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.98;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,147:147:99:4583,439,0 22 37196971 rs2001063 C A 3756.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.03;SOR=0.862 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3785,416,0 22 37267767 rs2072708 A G 2604.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.234;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=0.231;SOR=0.816 GT:AD:DP:GQ:PL 0/1:99,101:200:99:2633,0,2272 22 37271882 rs2075939 T C 2262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0;DB;DP=242;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.39;ReadPosRankSum=-1.278;SOR=0.56 GT:AD:DP:GQ:PL 0/1:143,98:241:99:2291,0,3758 22 37319425 rs2072713 G T 2885.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.506;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=5.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.45;ReadPosRankSum=0.561;SOR=0.44 GT:AD:DP:GQ:PL 0/1:126,126:252:99:2914,0,3331 22 37326443 rs16845 G C 1954.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.194;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.51;ReadPosRankSum=0.007;SOR=0.545 GT:AD:DP:GQ:PL 0/1:105,81:186:99:1983,0,2466 22 37328966 rs1534879 G C 7060.77 PASS AC=2;AF=1;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.92;SOR=0.978 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7089,704,0 22 37333406 rs16997510 T G 2215.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.676;ClippingRankSum=0;DB;DP=148;ExcessHet=3.0103;FS=15.22;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.97;ReadPosRankSum=-0.443;SOR=1.786 GT:AD:DP:GQ:PL 0/1:75,73:148:99:2244,0,1907 22 37333794 rs131840 A G 9236.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=37.25;SOR=1.067 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,248:248:99:1|1:37333794_A_G:9265,754,0 22 37333804 rs1801114 G A 2767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0;DB;DP=250;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.07;ReadPosRankSum=0.421;SOR=0.897 GT:AD:DP:GQ:PGT:PID:PL 0/1:136,114:250:99:0|1:37333794_A_G:2796,0,3649 22 37333936 rs16997517 C T 1962.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.01;ClippingRankSum=0;DB;DP=201;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-0.528;SOR=0.824 GT:AD:DP:GQ:PL 0/1:117,84:201:99:1991,0,3327 22 37387257 rs9610624 T C 4455.77 PASS AC=2;AF=1;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.761 GT:AD:DP:GQ:PL 1/1:0,151:151:99:4484,453,0 22 37387505 rs9610625 C A 2518.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.897 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2547,251,0 22 37407194 rs4764 G A 3248.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.271;SOR=0.789 GT:AD:DP:GQ:PL 0/1:143,131:274:99:3277,0,3698 22 37453452 rs710185 C T 3538.77 PASS AC=2;AF=1;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=1.004 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3567,368,0 22 37462926 rs2235321 G A 4288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0;DB;DP=236;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.25;ReadPosRankSum=0.855;SOR=0.68 GT:AD:DP:GQ:PGT:PID:PL 0/1:122,113:235:99:0|1:37462926_G_A:4317,0,5804 22 37462936 rs855791 A G 4329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.116;ClippingRankSum=0;DB;DP=238;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.27;ReadPosRankSum=0.042;SOR=0.587 GT:AD:DP:GQ:PGT:PID:PL 0/1:121,116:237:99:0|1:37462926_G_A:4358,0,5866 22 37465385 rs200434923 CTGGGG C 241.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.807;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.33;ReadPosRankSum=-1.342;SOR=0.132 GT:AD:DP:GQ:PL 0/1:24,9:33:99:279,0,1073 22 37469591 rs4820268 G A 879.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.192;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.89;ReadPosRankSum=0.901;SOR=0.483 GT:AD:DP:GQ:PL 0/1:57,42:99:99:908,0,1330 22 37480797 rs2111833 C T 4434.77 PASS AC=2;AF=1;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,152:152:99:4463,455,0 22 37485724 rs2235324 T C 7365.77 PASS AC=2;AF=1;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.16;SOR=0.719 GT:AD:DP:GQ:PL 1/1:0,229:229:99:7394,688,0 22 37524619 rs228942 G T 2014.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0;DB;DP=179;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.26;ReadPosRankSum=-0.83;SOR=0.635 GT:AD:DP:GQ:PL 0/1:94,85:179:99:2043,0,2440 22 37531436 rs228953 G A 2932.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.75;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2961,305,0 22 37532441 rs3218297 G A 1571.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.11;ReadPosRankSum=0.773;SOR=0.664 GT:AD:DP:GQ:PL 0/1:43,61:104:99:1600,0,1074 22 37533786 rs228957 C G 4227.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.59;SOR=1.839 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,97:97:99:1|1:37533786_C_G:4256,292,0 22 37533795 rs228958 G C 3919.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.66;SOR=1.754 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,84:84:99:1|1:37533786_C_G:3948,265,0 22 37581422 rs229526 G C 7013.77 PASS AC=2;AF=1;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.81 GT:AD:DP:GQ:PL 1/1:0,233:233:99:7042,698,0 22 37581485 rs229527 C A 6236.77 PASS AC=2;AF=1;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=1.015 GT:AD:DP:GQ:PL 1/1:0,212:212:99:6265,634,0 22 37602583 rs11406761 G GC 7198.73 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=33.33;SOR=0.938 GT:AD:DP:GQ:PL 1/1:0,216:216:99:7236,652,0 22 37695256 rs2301435 T C 691.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.932;ClippingRankSum=0;DB;DP=91;ExcessHet=3.0103;FS=2.959;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.6;ReadPosRankSum=-1.286;SOR=0.416 GT:AD:DP:GQ:PL 0/1:60,31:91:99:720,0,1543 22 37699377 rs2239822 T C 3195.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.399;ClippingRankSum=0;DB;DP=319;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=-0.609;SOR=0.773 GT:AD:DP:GQ:PL 0/1:181,138:319:99:3224,0,4293 22 37770066 rs8142615 G T 9510.77 PASS AC=2;AF=1;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.97;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,340:340:99:9539,1014,0 22 37770357 rs7292751 A G 10007.8 PASS AC=2;AF=1;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=0.764 GT:AD:DP:GQ:PL 1/1:0,319:319:99:10036,957,0 22 37770582 rs141544698 G A 4038.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0;DB;DP=316;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.94;ReadPosRankSum=0.507;SOR=0.867 GT:AD:DP:GQ:PL 0/1:146,166:312:99:4067,0,3742 22 37771158 rs2071857 G A 9441.77 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.41;SOR=0.699 GT:AD:DP:GQ:PL 1/1:0,321:321:99:9470,960,0 22 37906308 . G GCTCCTT 3084.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0;DP=205;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.05;MQRankSum=0.987;QD=20.56;ReadPosRankSum=0.897;SOR=0.692 GT:AD:DP:GQ:PL 0/1:73,77:150:99:3122,0,4843 22 37964299 rs2281098 C G 1706.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.179;ClippingRankSum=0;DB;DP=151;ExcessHet=3.0103;FS=3.895;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=1.15;QD=11.45;ReadPosRankSum=-0.148;SOR=0.49 GT:AD:DP:GQ:PL 0/1:84,65:149:99:1735,0,2385 22 37964408 rs66468174 CCAGCGCCTGCTGCAAACCCCT C 1281.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.273;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.5;MQ=62.02;MQRankSum=8.064;QD=9.78;ReadPosRankSum=0.861;SOR=0.891 GT:AD:DP:GQ:PL 0/1:89,42:131:99:1319,0,3367 22 38043444 rs3213528 C A 5514.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.842 GT:AD:DP:GQ:PL 1/1:0,185:185:99:5543,553,0 22 38097359 rs12484441 C G 635.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.438;SOR=0.436 GT:AD:DP:GQ:PL 0/1:25,26:51:99:664,0,706 22 38119213 rs12628603 G A 1558.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0;DB;DP=163;ExcessHet=3.0103;FS=0.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.56;ReadPosRankSum=-0.211;SOR=0.6 GT:AD:DP:GQ:PL 0/1:91,72:163:99:1587,0,2438 22 38119754 rs67890459 TCAA T 11492.7 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.003;ClippingRankSum=0;DB;DP=584;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.5;MQ=59.65;MQRankSum=-2.317;QD=19.85;ReadPosRankSum=1.607;SOR=0.775 GT:AD:DP:GQ:PL 0/1:283,296:579:99:11530,0,11873 22 38120041 rs4821700 G A 6906.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0;DB;DP=581;ExcessHet=3.0103;FS=35.596;MLEAC=1;MLEAF=0.5;MQ=33.27;MQRankSum=-10.165;QD=12.07;ReadPosRankSum=-4.983;SOR=1.979 GT:AD:DP:GQ:PL 0/1:280,292:572:99:6935,0,6502 22 38121152 rs9610841 C A 2616.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.38;ReadPosRankSum=0.964;SOR=0.818 GT:AD:DP:GQ:PL 0/1:141,111:252:99:2645,0,3696 22 38122122 rs5756795 T C 5410.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.1;ClippingRankSum=0;DB;DP=401;ExcessHet=3.0103;FS=3.154;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.53;ReadPosRankSum=0.518;SOR=0.701 GT:AD:DP:GQ:PL 0/1:194,206:400:99:5439,0,4588 22 38122448 rs739137 C T 3648.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0;DB;DP=338;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.8;ReadPosRankSum=-1.016;SOR=0.743 GT:AD:DP:GQ:PL 0/1:179,159:338:99:3677,0,4474 22 38122462 rs739138 A G 10340.8 PASS AC=2;AF=1;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=1.006 GT:AD:DP:GQ:PL 1/1:0,334:334:99:10369,1002,0 22 38129332 rs7284476 G A 1947.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.124;ClippingRankSum=0;DB;DP=145;ExcessHet=3.0103;FS=1.33;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.62;ReadPosRankSum=0.433;SOR=0.587 GT:AD:DP:GQ:PL 0/1:62,81:143:99:1976,0,1403 22 38130459 rs8140207 G T 2568.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.55;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.023;SOR=0.764 GT:AD:DP:GQ:PL 0/1:133,108:241:99:2597,0,3538 22 38130472 rs8140958 T C 8288.77 PASS AC=2;AF=1;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.52;SOR=1.338 GT:AD:DP:GQ:PL 1/1:0,263:263:99:8317,789,0 22 38161835 rs3833924 T TG 1964.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.1;ReadPosRankSum=0.377;SOR=0.502 GT:AD:DP:GQ:PL 0/1:66,84:150:99:2002,0,1528 22 38164106 rs4821708 C T 1362.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.9;ReadPosRankSum=2.066;SOR=0.716 GT:AD:DP:GQ:PL 0/1:66,59:125:99:1391,0,1605 22 38204089 rs710187 C T 2104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.548;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=-1.293;SOR=0.782 GT:AD:DP:GQ:PL 0/1:92,92:184:99:2133,0,2094 22 38205989 rs2285178 T C 1049.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0;DB;DP=102;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.29;ReadPosRankSum=-0.172;SOR=0.859 GT:AD:DP:GQ:PL 0/1:52,50:102:99:1078,0,1137 22 38220964 rs8138029 T C 1518.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=0.336;SOR=0.758 GT:AD:DP:GQ:PL 0/1:66,64:130:99:1547,0,1474 22 38273749 rs9466 T C 3171.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.76;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=-1.382;QD=11.17;ReadPosRankSum=-2.082;SOR=0.636 GT:AD:DP:GQ:PL 0/1:139,145:284:99:3200,0,3225 22 38323507 rs9610875 G T 4525.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.539;ClippingRankSum=0;DB;DP=337;ExcessHet=3.0103;FS=2.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.877;SOR=0.651 GT:AD:DP:GQ:PL 0/1:148,189:337:99:4554,0,3283 22 38341134 rs139859 T C 1797.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.39;ReadPosRankSum=1.722;SOR=0.815 GT:AD:DP:GQ:PL 0/1:92,81:173:99:1826,0,2393 22 38369976 rs139884 A G 1982.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.018;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.24;ReadPosRankSum=0.071;SOR=0.558 GT:AD:DP:GQ:PL 0/1:81,81:162:99:2011,0,2043 22 38474696 rs2076371 A G 5485.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.35;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5514,525,0 22 38477342 rs4289289 T A 4102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0;DB;DP=300;ExcessHet=3.0103;FS=8.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=0.337;SOR=0.387 GT:AD:DP:GQ:PL 0/1:135,164:299:99:4131,0,3371 22 38485540 rs17856487 A G 1656.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.184;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=4.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.1;ReadPosRankSum=1.613;SOR=0.439 GT:AD:DP:GQ:PL 0/1:107,75:182:99:1685,0,2572 22 38503847 rs6001006 C T 3483.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.79;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3512,363,0 22 38506509 rs4820313 A G 5184.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.63;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5213,524,0 22 38877461 rs12004 T G 1451.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.6;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=-2.125;SOR=0.586 GT:AD:DP:GQ:PL 0/1:76,63:139:99:1480,0,2000 22 38895521 rs3833951 AAAG A 1193.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.525;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=5.769;MLEAC=1;MLEAF=0.5;MQ=60.16;MQRankSum=1.061;QD=18.09;ReadPosRankSum=-2.638;SOR=1.552 GT:AD:DP:GQ:PL 0/1:34,32:66:99:1231,0,1617 22 38993370 rs5757162 C T 445.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0;DB;DP=99;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.5;ReadPosRankSum=0.101;SOR=0.529 GT:AD:DP:GQ:PL 0/1:72,27:99:99:474,0,1881 22 39003495 rs5757169 G A 1276.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.739;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.85;ReadPosRankSum=0.524;SOR=0.444 GT:AD:DP:GQ:PL 0/1:29,57:86:99:1305,0,690 22 39069181 rs3747174 T C 744.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.43;ReadPosRankSum=-0.095;SOR=1.032 GT:AD:DP:GQ:PL 0/1:44,35:79:99:773,0,1144 22 39134715 rs1062687 T C 2647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.5;ClippingRankSum=0;DB;DP=271;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.77;ReadPosRankSum=-1.7;SOR=0.569 GT:AD:DP:GQ:PL 0/1:158,113:271:99:2676,0,3889 22 39178701 rs760482 A G 1734.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.317;SOR=0.924 GT:AD:DP:GQ:PL 0/1:68,78:146:99:1763,0,1491 22 39222652 rs5757299 G A 9020.77 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.872 GT:AD:DP:GQ:PL 1/1:0,301:301:99:9049,902,0 22 39496322 rs140936762 TAAC T 6283.73 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.15;QD=44.57;SOR=1.357 GT:AD:DP:GQ:PL 1/1:0,141:141:99:6321,425,0 22 39496336 rs139293 G T 4648.77 PASS AC=2;AF=1;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=30.38;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,153:153:99:4677,459,0 22 39496412 rs139294 G C 6150.77 PASS AC=2;AF=1;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=29.71;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,207:207:99:6179,620,0 22 39497404 rs139297 G C 7884.77 PASS AC=2;AF=1;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,275:275:99:7913,824,0 22 39497452 rs139298 A G 11227.8 PASS AC=2;AF=1;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.55;SOR=0.845 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,252:252:99:1|1:39497452_A_G:11256,770,0 22 39497454 rs139299 G C 11227.8 PASS AC=2;AF=1;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.46;SOR=0.839 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,247:247:99:1|1:39497452_A_G:11256,770,0 22 39497509 rs139300 A G 3988.77 PASS AC=2;AF=1;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.8;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,118:118:99:4017,354,0 22 39498038 rs139302 G C 7394.77 PASS AC=2;AF=1;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.06;SOR=0.813 GT:AD:DP:GQ:PL 1/1:0,246:246:99:7423,737,0 22 39714490 rs6509 C T 4366.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.61;QD=29.51;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4395,443,0 22 39777822 rs57910921 C CCAA 6654.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.35;ReadPosRankSum=0.03;SOR=0.672 GT:AD:DP:GQ:PL 0/1:176,168:344:99:6692,0,7476 22 39884942 rs117647351 G A 3769.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.66;ReadPosRankSum=-0.76;SOR=0.696 GT:AD:DP:GQ:PL 0/1:129,147:276:99:3798,0,3243 22 39917515 rs4894 A C 1844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.5;MQ=57.55;MQRankSum=-1.941;QD=8.96;ReadPosRankSum=-0.469;SOR=0.577 GT:AD:DP:GQ:PL 0/1:121,85:206:99:1873,0,3054 22 40054948 rs5757761 T C 3151.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.528;ClippingRankSum=0;DB;DP=251;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.66;ReadPosRankSum=-1.192;SOR=0.706 GT:AD:DP:GQ:PL 0/1:118,131:249:99:3180,0,2435 22 40057273 rs136852 T C 2115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=6.316;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.11;ReadPosRankSum=0.937;SOR=0.345 GT:AD:DP:GQ:PL 0/1:68,82:150:99:2144,0,1797 22 40058186 rs136853 A G 3364.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.774;ClippingRankSum=0;DB;DP=235;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.38;ReadPosRankSum=2.361;SOR=0.642 GT:AD:DP:GQ:PL 0/1:97,137:234:99:3393,0,2124 22 40075400 rs2294369 G A 2417.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.324;ClippingRankSum=0;DB;DP=184;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.28;ReadPosRankSum=1.358;SOR=0.766 GT:AD:DP:GQ:PL 0/1:82,100:182:99:2446,0,1912 22 40417780 rs5995793 C T 2560.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.21;ClippingRankSum=0;DB;DP=259;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.252;SOR=0.679 GT:AD:DP:GQ:PL 0/1:143,114:257:99:2589,0,3453 22 40417820 rs5995794 A G 2782.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.25;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.175;SOR=0.771 GT:AD:DP:GQ:PL 0/1:125,115:240:99:2811,0,3034 22 40552119 rs9611280 G A 611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.848;ClippingRankSum=0;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.71;ReadPosRankSum=1.146;SOR=0.801 GT:AD:DP:GQ:PL 0/1:36,27:63:99:640,0,840 22 40673999 rs2413621 C T 902.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0;DB;DP=69;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.08;ReadPosRankSum=-0.09;SOR=1.224 GT:AD:DP:GQ:PL 0/1:35,34:69:99:931,0,966 22 40697176 rs57207626 TGCA T 4515.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.103;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=4.288;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=1.033;QD=18.36;ReadPosRankSum=-0.536;SOR=0.957 GT:AD:DP:GQ:PL 0/1:127,119:248:99:4553,0,5012 22 40797647 rs9611338 T C 1140.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.824;ClippingRankSum=0;DB;DP=122;ExcessHet=3.0103;FS=4.415;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.35;ReadPosRankSum=1.826;SOR=0.612 GT:AD:DP:GQ:PL 0/1:69,53:122:99:1169,0,1548 22 40800544 rs2235318 C T 1141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.19;ClippingRankSum=0;DB;DP=96;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=-0.166;SOR=1.071 GT:AD:DP:GQ:PL 0/1:48,48:96:99:1170,0,1359 22 40803186 rs2018393 G T 1555.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0;DB;DP=169;ExcessHet=3.0103;FS=1.93;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.21;ReadPosRankSum=-0.865;SOR=0.849 GT:AD:DP:GQ:PL 0/1:102,67:169:99:1584,0,2774 22 40814500 rs878756 T C 3535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.303;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.565;SOR=0.602 GT:AD:DP:GQ:PL 0/1:127,151:278:99:3564,0,2771 22 40814594 rs56211152 C T 2862.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0;DB;DP=248;ExcessHet=3.0103;FS=0.47;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.033;SOR=0.643 GT:AD:DP:GQ:PL 0/1:122,123:245:99:2891,0,3118 22 41075543 rs133072 A G 5788.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=0.984 GT:AD:DP:GQ:PL 1/1:0,193:193:99:5817,579,0 22 41075695 rs133073 C T 5445.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.25;SOR=0.993 GT:AD:DP:GQ:PL 1/1:0,180:180:99:5474,539,0 22 41240835 rs1573745 G A 972.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0;DB;DP=76;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-0.677;SOR=0.873 GT:AD:DP:GQ:PL 0/1:33,43:76:99:1001,0,796 22 41537234 rs6002267 G T 3187.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=1.322 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3216,320,0 22 41542753 rs61756763 A G 1045.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.072;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=3.886;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.24;ReadPosRankSum=0.568;SOR=1.096 GT:AD:DP:GQ:PL 0/1:50,43:93:99:1074,0,1178 22 41542838 rs9611506 T A 812.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.097;ClippingRankSum=0;DB;DP=95;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.65;ReadPosRankSum=-1.434;SOR=0.637 GT:AD:DP:GQ:PL 0/1:50,44:94:99:841,0,1111 22 41545024 rs71761046 G GT 38.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.466;ClippingRankSum=0;DB;DP=129;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.902;QD=0.35;ReadPosRankSum=-0.809;SOR=0.916 GT:AD:DP:GQ:PL 0/1:92,18:118:76:76,0,1855 22 41548008 rs20551 A G 1561.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.227;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=3.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=-0.605;SOR=0.96 GT:AD:DP:GQ:PL 0/1:72,65:137:99:1590,0,1736 22 41551039 rs20552 T A 3506.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.83;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3535,377,0 22 41566595 rs6002271 C T 1304.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0;DB;DP=93;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.5;MQ=60.12;MQRankSum=-1.057;QD=14.03;ReadPosRankSum=-2.039;SOR=0.885 GT:AD:DP:GQ:PL 0/1:43,50:93:99:1333,0,1159 22 41569609 rs2076578 C T 1179.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.027;ClippingRankSum=0;DB;DP=110;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.73;ReadPosRankSum=-1.177;SOR=0.557 GT:AD:DP:GQ:PL 0/1:61,49:110:99:1208,0,1588 22 41613188 rs9611519 C T 653.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.093;ClippingRankSum=0;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.38;ReadPosRankSum=0.577;SOR=0.613 GT:AD:DP:GQ:PL 0/1:46,32:78:99:682,0,1086 22 41645757 rs71948 C G 3325.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.29;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3354,309,0 22 41652846 rs4820435 G T 1383.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.701;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.67;ReadPosRankSum=-0.874;SOR=0.563 GT:AD:DP:GQ:PL 0/1:31,52:83:99:1412,0,707 22 41726053 rs4822021 G A 2677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0;DB;DP=227;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.915;SOR=0.743 GT:AD:DP:GQ:PL 0/1:105,121:226:99:2706,0,2512 22 41752747 rs12484074 G A 3781.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.845;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.93;ReadPosRankSum=-1.179;SOR=0.844 GT:AD:DP:GQ:PL 0/1:159,158:317:99:3810,0,3729 22 41833116 rs202641 C T 6512.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,214:214:99:6541,640,0 22 41911525 rs1799932 C T 3134.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0;DB;DP=241;ExcessHet=3.0103;FS=3.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.01;ReadPosRankSum=1.873;SOR=0.949 GT:AD:DP:GQ:PL 0/1:113,128:241:99:3163,0,2904 22 42076381 rs5758405 C A 3001.77 PASS AC=2;AF=1;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.63;SOR=1.426 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3030,294,0 22 42089623 rs739134 T C 5062.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.5;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5091,498,0 22 42095539 rs143622216 G GGA 3646.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=7.07;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.79;ReadPosRankSum=1.525;SOR=0.381 GT:AD:DP:GQ:PL 0/1:107,98:205:99:3684,0,4009 22 42128461 rs6002455 T A 1221.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=8.15;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.55;ReadPosRankSum=0.714;SOR=0.666 GT:AD:DP:GQ:PL 0/1:75,53:128:99:1250,0,1941 22 42139078 rs5751148 A G 2304.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.57;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2333,219,0 22 42141871 rs79093738 C CA 1718.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.86;ReadPosRankSum=0.765;SOR=0.583 GT:AD:DP:GQ:PL 0/1:67,57:124:99:1756,0,2132 22 42154430 rs8141939 T C 2264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0;DB;DP=174;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.02;ReadPosRankSum=-1.254;SOR=0.803 GT:AD:DP:GQ:PL 0/1:78,96:174:99:2293,0,1864 22 42159229 rs2050033 G T 4060.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.72;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4089,384,0 22 42177816 rs6002481 C A 2894.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.198;ClippingRankSum=0;DB;DP=206;ExcessHet=3.0103;FS=4.038;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.05;ReadPosRankSum=0.094;SOR=0.474 GT:AD:DP:GQ:PL 0/1:86,120:206:99:2923,0,2252 22 42191540 rs6002488 C T 1777.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.248;ClippingRankSum=0;DB;DP=168;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=1.176;SOR=0.635 GT:AD:DP:GQ:PL 0/1:91,77:168:99:1806,0,2165 22 42273933 rs9611685 C T 925.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.19;ReadPosRankSum=-0.531;SOR=0.734 GT:AD:DP:GQ:PL 0/1:72,41:113:99:954,0,2067 22 42276742 rs2228314 G C 5246.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=1.246 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5275,519,0 22 42301434 rs41276325 C T 1896.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.05;ReadPosRankSum=0.904;SOR=0.403 GT:AD:DP:GQ:PL 0/1:51,75:126:99:1925,0,1337 22 42343091 rs6002555 G A 1770.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.677;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.81;ReadPosRankSum=1.001;SOR=0.634 GT:AD:DP:GQ:PL 0/1:79,71:150:99:1799,0,1883 22 42416056 rs133335 A G 1403.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.405;ClippingRankSum=0;DB;DP=126;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=-0.074;SOR=0.925 GT:AD:DP:GQ:PL 0/1:69,57:126:99:1432,0,1628 22 42423110 rs2301521 G C 13002.8 PASS AC=2;AF=1;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.31;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,429:429:99:13031,1284,0 22 42461918 rs2854827 G A 1559.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.321;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.91;ReadPosRankSum=-0.666;SOR=0.856 GT:AD:DP:GQ:PL 0/1:103,72:175:99:1588,0,2466 22 42463814 rs133369 C T 3016.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.29;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3045,309,0 22 42473603 rs133383 C T 3508.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0;DB;DP=317;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.14;ReadPosRankSum=1.546;SOR=0.82 GT:AD:DP:GQ:PL 0/1:162,153:315:99:3537,0,4152 22 42522613 rs1135840 G C 2454.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.946;ClippingRankSum=0;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.23;MQRankSum=-0.023;QD=12.72;ReadPosRankSum=-0.929;SOR=0.711 GT:AD:DP:GQ:PL 0/1:96,97:193:99:2483,0,2226 22 42523003 rs116917064 A G 1151.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=31.17;QD=30.31;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1180,114,0 22 42523636 rs3915951 C A 147.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=14.817;MLEAC=1;MLEAF=0.5;MQ=58.64;MQRankSum=-6.893;QD=1.03;ReadPosRankSum=-3.115;SOR=2.531 GT:AD:DP:GQ:PL 0/1:126,18:144:99:176,0,3682 22 42523943 rs16947 A G 5756.77 PASS AC=2;AF=1;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.87;QD=29.98;SOR=0.757 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5785,575,0 22 42524795 . A G 2119.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0;DP=334;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=58.25;MQRankSum=-3.743;QD=6.35;ReadPosRankSum=1.154;SOR=0.678 GT:AD:DP:GQ:PL 0/1:227,107:334:99:2148,0,5954 22 42524947 rs3892097 C T 3102.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.408;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=8.421;MLEAC=1;MLEAF=0.5;MQ=52.34;MQRankSum=2.618;QD=11.24;ReadPosRankSum=0.01;SOR=0.553 GT:AD:DP:GQ:PL 0/1:157,119:276:99:3131,0,4142 22 42525132 rs1058164 G C 2535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0;DB;DP=222;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.5;MQ=59.21;MQRankSum=-4.178;QD=11.42;ReadPosRankSum=-0.939;SOR=0.787 GT:AD:DP:GQ:PL 0/1:120,102:222:99:2564,0,3289 22 42525756 rs1081003 G A 3064.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.455;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.44;ReadPosRankSum=1.277;SOR=0.614 GT:AD:DP:GQ:PL 0/1:136,132:268:99:3093,0,3160 22 42526694 rs1065852 G A 2398.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=4.98;MLEAC=1;MLEAF=0.5;MQ=59.94;MQRankSum=0;QD=12.3;ReadPosRankSum=0.492;SOR=1.023 GT:AD:DP:GQ:PL 0/1:93,102:195:99:2427,0,2228 22 42609845 rs78356795 G A 3090.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.31;ReadPosRankSum=1.324;SOR=0.762 GT:AD:DP:GQ:PL 0/1:132,119:251:99:3119,0,3618 22 42910165 rs74731503 C T 1167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.502;ClippingRankSum=0;DB;DP=298;ExcessHet=3.0103;FS=7.292;MLEAC=1;MLEAF=0.5;MQ=56.86;MQRankSum=-3.506;QD=3.92;ReadPosRankSum=1.672;SOR=0.957 GT:AD:DP:GQ:PL 0/1:221,77:298:99:1196,0,5958 22 43088971 rs9623659 C T 8859.77 PASS AC=2;AF=1;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=0.837 GT:AD:DP:GQ:PL 1/1:0,296:296:99:8888,886,0 22 43089055 rs6002904 G C 8452.77 PASS AC=2;AF=1;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.42;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,269:269:99:8481,807,0 22 43089849 rs11541159 T C 7289.77 PASS AC=2;AF=1;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.04;QD=29.39;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,248:248:99:7318,744,0 22 43195147 rs1128013 A G 2751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.53;ClippingRankSum=0;DB;DP=221;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.45;ReadPosRankSum=-1.07;SOR=0.561 GT:AD:DP:GQ:PL 0/1:101,120:221:99:2780,0,2277 22 43203137 rs738535 C T 1838.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.299;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.1;ReadPosRankSum=-0.227;SOR=0.859 GT:AD:DP:GQ:PL 0/1:103,79:182:99:1867,0,2468 22 43206950 rs1018448 A C 1225.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.29;ClippingRankSum=0;DB;DP=144;ExcessHet=3.0103;FS=6.29;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.51;ReadPosRankSum=-1.269;SOR=1.027 GT:AD:DP:GQ:PL 0/1:86,58:144:99:1254,0,2055 22 43278220 rs2899365 C T 1161.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.328;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.93;ReadPosRankSum=1.149;SOR=0.762 GT:AD:DP:GQ:PL 0/1:70,47:117:99:1190,0,1760 22 43289473 rs5759013 G A 2058.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.03;ReadPosRankSum=1.832;SOR=0.701 GT:AD:DP:GQ:PL 0/1:69,89:158:99:2087,0,1626 22 43442599 rs5759111 T C 4165.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4194,420,0 22 43455531 rs1132079 C T 3141.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.13;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.96;ReadPosRankSum=-0.605;SOR=0.641 GT:AD:DP:GQ:PL 0/1:103,122:225:99:3170,0,2639 22 43459846 rs1052160 G A 1271.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.798;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=1.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.37;ReadPosRankSum=1.533;SOR=0.627 GT:AD:DP:GQ:PL 0/1:91,61:152:99:1300,0,2119 22 43558926 rs6971 A G 2345.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.358;ClippingRankSum=0;DB;DP=246;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.54;ReadPosRankSum=1.624;SOR=0.688 GT:AD:DP:GQ:PL 0/1:144,102:246:99:2374,0,3389 22 43575616 rs4822261 G A 2864.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-4.304;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=0.502;SOR=0.575 GT:AD:DP:GQ:PL 0/1:122,125:247:99:2893,0,3310 22 43575774 rs138945 A C 9450.77 PASS AC=2;AF=1;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,301:301:99:9479,901,0 22 43576880 rs11090144 C A 2741.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=-1.152;SOR=0.826 GT:AD:DP:GQ:PL 0/1:115,122:237:99:2770,0,2664 22 43576904 rs2071723 G A 2658.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0;DB;DP=257;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.032;SOR=0.544 GT:AD:DP:GQ:PL 0/1:131,124:255:99:2687,0,3089 22 43579049 rs13058467 T C 3375.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.989;ClippingRankSum=0;DB;DP=289;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.086;SOR=0.689 GT:AD:DP:GQ:PL 0/1:152,137:289:99:3404,0,3162 22 43599991 rs13056939 C T 2600.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.514;SOR=0.914 GT:AD:DP:GQ:PL 0/1:100,112:212:99:2629,0,2211 22 43606143 rs5759217 C T 2934.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.651;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.02;ReadPosRankSum=1.244;SOR=0.638 GT:AD:DP:GQ:PL 0/1:158,135:293:99:2963,0,3516 22 43610106 rs34893532 C T 743.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.812;ClippingRankSum=0;DB;DP=113;ExcessHet=3.0103;FS=2.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.63;ReadPosRankSum=1.28;SOR=0.417 GT:AD:DP:GQ:PL 0/1:42,28:70:99:772,0,1281 22 43610207 rs138993 A G 4692.77 PASS AC=2;AF=1;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.61;SOR=0.794 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4721,491,0 22 43614316 rs9620123 C G 2633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0;DB;DP=228;ExcessHet=3.0103;FS=2.943;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.6;ReadPosRankSum=-0.12;SOR=0.533 GT:AD:DP:GQ:PL 0/1:118,109:227:99:2662,0,3061 22 43618632 rs139005 CG C 3785.73 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.17;QD=30.78;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3823,370,0 22 43623395 rs129415 C G 6589.77 PASS AC=2;AF=1;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,220:220:99:6618,660,0 22 43830996 rs2413761 C T 5954.77 PASS AC=2;AF=1;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.19;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,204:204:99:5983,610,0 22 43831056 rs4331615 C T 6495.77 PASS AC=2;AF=1;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.39;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6524,662,0 22 43926857 rs76475527 CAAGAAGGGGT C 1450.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.422;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=7.653;MLEAC=1;MLEAF=0.5;MQ=60.52;MQRankSum=3.481;QD=11.79;ReadPosRankSum=-1.23;SOR=1.392 GT:AD:DP:GQ:PL 0/1:81,42:123:99:1488,0,4168 22 43976396 rs9614382 G A 5764.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.02;SOR=0.947 GT:AD:DP:GQ:PL 1/1:0,192:192:99:5793,576,0 22 44022578 rs110618 C A 3883.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.092;ClippingRankSum=0;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.35;ReadPosRankSum=1.751;SOR=0.451 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3912,400,0 22 44079680 rs137794 G A 1055.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.73;ReadPosRankSum=1.184;SOR=0.567 GT:AD:DP:GQ:PL 0/1:68,53:121:99:1084,0,1611 22 44229508 rs138070 G A 1363.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.77;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.24;ReadPosRankSum=-1.435;SOR=0.6 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,59:103:99:0|1:44229492_G_C:1392,0,1035 22 44282276 rs739231 A G 2841.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0;DB;DP=266;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.29;SOR=0.657 GT:AD:DP:GQ:PL 0/1:139,126:265:99:2870,0,3311 22 44282307 rs739232 G A 2824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0;DB;DP=260;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.95;ReadPosRankSum=1.117;SOR=0.643 GT:AD:DP:GQ:PL 0/1:136,122:258:99:2853,0,3483 22 44285667 rs713864 G A 2953.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.623;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=5.566;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.84;ReadPosRankSum=0.56;SOR=0.436 GT:AD:DP:GQ:PL 0/1:110,120:230:99:2982,0,3058 22 44287062 rs2071884 A G 4199.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.484;ClippingRankSum=0;DB;DP=326;ExcessHet=3.0103;FS=6.525;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=1.562;SOR=0.754 GT:AD:DP:GQ:PL 0/1:154,171:325:99:4228,0,3631 22 44287661 . G T 3686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0;DP=299;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.33;ReadPosRankSum=-0.992;SOR=0.659 GT:AD:DP:GQ:PL 0/1:135,164:299:99:3715,0,3159 22 44324727 rs738409 C G 2825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.019;ClippingRankSum=0;DB;DP=150;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.49;ReadPosRankSum=-2.074;SOR=0.985 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,72:145:99:0|1:44324727_C_G:2854,0,2821 22 44324730 rs738408 C T 2825.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0;DB;DP=152;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=19.22;ReadPosRankSum=-1.577;SOR=0.966 GT:AD:DP:GQ:PGT:PID:PL 0/1:73,74:147:99:0|1:44324727_C_G:2854,0,2821 22 44333172 rs2072906 A G 1767.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.61;ReadPosRankSum=0.276;SOR=0.734 GT:AD:DP:GQ:PL 0/1:50,71:121:99:1796,0,1225 22 44342116 rs2294918 A G 2951.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.876;ClippingRankSum=0;DB;DP=239;ExcessHet=3.0103;FS=0.99;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=0.628;SOR=0.778 GT:AD:DP:GQ:PL 0/1:119,120:239:99:2980,0,2675 22 44364594 rs5764434 C T 358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.32;ReadPosRankSum=0.742;SOR=0.668 GT:AD:DP:GQ:PL 0/1:31,18:49:99:387,0,837 22 44368122 rs3761472 A G 446.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0;DB;DP=66;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.77;ReadPosRankSum=1.995;SOR=0.552 GT:AD:DP:GQ:PL 0/1:42,24:66:99:475,0,1044 22 44368204 rs3177036 A G 535.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.176;ClippingRankSum=0;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.7;ReadPosRankSum=1.889;SOR=0.678 GT:AD:DP:GQ:PL 0/1:52,28:80:99:564,0,1220 22 44368741 rs932430 C T 1461.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.26;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=7.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.6;ReadPosRankSum=0.824;SOR=1.373 GT:AD:DP:GQ:PL 0/1:65,51:116:99:1490,0,1477 22 44372069 rs2073084 G A 1545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.203;ClippingRankSum=0;DB;DP=130;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.89;ReadPosRankSum=0.825;SOR=0.494 GT:AD:DP:GQ:PL 0/1:67,63:130:99:1574,0,1600 22 44372632 rs14315 C T 722.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0;DB;DP=65;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.12;ReadPosRankSum=0.321;SOR=0.538 GT:AD:DP:GQ:PL 0/1:33,32:65:99:751,0,810 22 44379822 rs10452 T C 1338.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.745;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.54;ReadPosRankSum=-0.804;SOR=0.866 GT:AD:DP:GQ:PL 0/1:60,56:116:99:1367,0,1376 22 44379838 rs8418 A G 1283.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.616;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.08;SOR=0.859 GT:AD:DP:GQ:PL 0/1:64,58:122:99:1312,0,1382 22 44395451 rs1007863 T C 1162.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0;DB;DP=83;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.01;ReadPosRankSum=0.128;SOR=0.435 GT:AD:DP:GQ:PL 0/1:35,48:83:99:1191,0,816 22 44489868 rs1983609 T C 1087.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.276;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.77;ReadPosRankSum=1.77;SOR=0.607 GT:AD:DP:GQ:PL 0/1:49,52:101:99:1116,0,1008 22 44489896 rs738479 T C 1060.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.134;ClippingRankSum=0;DB;DP=103;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=-0.169;SOR=0.809 GT:AD:DP:GQ:PL 0/1:51,52:103:99:1089,0,1001 22 44495953 rs56194750 A G 565.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.356;ClippingRankSum=0;DB;DP=90;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.29;ReadPosRankSum=0.286;SOR=0.846 GT:AD:DP:GQ:PL 0/1:62,28:90:99:594,0,1535 22 44602229 rs139186 A C 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.188;ClippingRankSum=0;DB;DP=117;ExcessHet=3.0103;FS=0.71;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=-1.78;SOR=0.831 GT:AD:DP:GQ:PL 0/1:48,69:117:99:1740,0,1019 22 44681612 rs135388 A G 3910.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.59;SOR=1.773 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3939,360,0 22 45075738 rs763213 T C 5191.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5220,546,0 22 45128232 rs8141631 T C 3745.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.819;ClippingRankSum=0;DB;DP=396;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=-1.624;SOR=0.702 GT:AD:DP:GQ:PL 0/1:227,169:396:99:3774,0,5283 22 45128288 rs5764979 G C 3534.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.211;ClippingRankSum=0;DB;DP=355;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.96;ReadPosRankSum=0.411;SOR=0.619 GT:AD:DP:GQ:PL 0/1:203,152:355:99:3563,0,5086 22 45182425 rs138492067 T A 4184.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0;DB;DP=364;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=-0.533;SOR=0.641 GT:AD:DP:GQ:PL 0/1:176,188:364:99:4213,0,3975 22 45221423 rs3209476 A T 3872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.468;ClippingRankSum=0;DB;DP=396;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.85;ReadPosRankSum=1.238;SOR=0.704 GT:AD:DP:GQ:PL 0/1:210,183:393:99:3901,0,4585 22 45593661 rs55790105 C T 1109.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=6.469;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.37;ReadPosRankSum=-0.314;SOR=1.387 GT:AD:DP:GQ:PL 0/1:59,48:107:99:1138,0,1655 22 45683246 rs2673088 C T 3082.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.18;ReadPosRankSum=1.296;SOR=0.735 GT:AD:DP:GQ:PL 0/1:122,131:253:99:3111,0,3178 22 45683304 rs1057353 G C 3135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0;DB;DP=285;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.08;ReadPosRankSum=-0.184;SOR=0.64 GT:AD:DP:GQ:PL 0/1:147,136:283:99:3164,0,3611 22 45685002 rs1135360 A G 4851.77 PASS AC=2;AF=1;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.4;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,165:165:99:4880,494,0 22 45719222 rs143924695 G A 2842.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.058;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=3.954;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.67;ReadPosRankSum=1.054;SOR=0.482 GT:AD:DP:GQ:PL 0/1:95,113:208:99:2871,0,2260 22 45723854 rs9615108 C G 6969.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=32.27;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,216:216:99:6998,647,0 22 45748339 rs5765275 A G 1404.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0;DB;DP=123;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.5;MQ=60.26;MQRankSum=-0.558;QD=11.42;ReadPosRankSum=0.192;SOR=0.887 GT:AD:DP:GQ:PL 0/1:62,61:123:99:1433,0,1481 22 45749983 rs5764698 G T 904.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.8;ReadPosRankSum=0.15;SOR=0.666 GT:AD:DP:GQ:PL 0/1:70,46:116:99:933,0,1615 22 45754558 rs5765281 A G 844.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.405;ClippingRankSum=0;DB;DP=51;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.56;ReadPosRankSum=0.883;SOR=0.412 GT:AD:DP:GQ:PL 0/1:19,32:51:99:873,0,446 22 45755666 rs1012493 C T 1135.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.63;ClippingRankSum=0;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.63;ReadPosRankSum=-0.681;SOR=0.658 GT:AD:DP:GQ:PL 0/1:68,50:118:99:1164,0,1619 22 45758758 rs719925 T C 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.091;ClippingRankSum=0;DB;DP=73;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.3;ReadPosRankSum=0.012;SOR=0.54 GT:AD:DP:GQ:PL 0/1:41,32:73:99:780,0,1072 22 45767421 rs56174639 C T 358.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.112;ClippingRankSum=0;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=2.038;SOR=0.815 GT:AD:DP:GQ:PL 0/1:22,16:38:99:387,0,540 22 45767455 rs136569 A G 334.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.421;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-1.695;SOR=0.616 GT:AD:DP:GQ:PL 0/1:17,13:30:99:363,0,457 22 45779335 rs136585 A G 1022.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.47;ReadPosRankSum=0.246;SOR=0.548 GT:AD:DP:GQ:PL 0/1:39,43:82:99:1051,0,986 22 45782903 rs6007010 T C 1269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.394;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=0.436;SOR=0.598 GT:AD:DP:GQ:PL 0/1:48,50:98:99:1298,0,995 22 45789642 rs136603 A C 3283.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3312,340,0 22 45810278 rs59404993 A AC 1977.73 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.2;QD=36.62;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,54:54:99:2015,163,0 22 45821887 rs1022477 G A 1392.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0;DB;DP=175;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.96;ReadPosRankSum=2.13;SOR=0.522 GT:AD:DP:GQ:PL 0/1:110,65:175:99:1421,0,2864 22 45821956 rs1022478 C G 2030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.031;ClippingRankSum=0;DB;DP=219;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.27;ReadPosRankSum=-1.926;SOR=0.758 GT:AD:DP:GQ:PL 0/1:126,93:219:99:2059,0,3009 22 45826880 rs2072770 G A 3288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.322;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12;ReadPosRankSum=-0.606;SOR=0.717 GT:AD:DP:GQ:PL 0/1:131,143:274:99:3317,0,2947 22 45923827 rs136730 A G 6206.77 PASS AC=2;AF=1;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.87;SOR=0.702 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6235,644,0 22 45927220 rs6006768 C G 751.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.64;ReadPosRankSum=-2.047;SOR=0.698 GT:AD:DP:GQ:PL 0/1:40,38:78:99:780,0,927 22 45937149 rs9682 C T 1510.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.742;ClippingRankSum=0;DB;DP=161;ExcessHet=3.0103;FS=5.741;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.44;ReadPosRankSum=1.302;SOR=0.951 GT:AD:DP:GQ:PL 0/1:90,70:160:99:1539,0,2054 22 46449891 rs12159707 G A 3762.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.536;ClippingRankSum=0;DB;DP=295;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=1.491;SOR=0.748 GT:AD:DP:GQ:PL 0/1:144,146:290:99:3791,0,3719 22 46644168 rs9627281 A G 646.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.958;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.35;ReadPosRankSum=1.123;SOR=1.123 GT:AD:DP:GQ:PL 0/1:35,22:57:99:675,0,868 22 46677607 rs130642 T C 7266.77 PASS AC=2;AF=1;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.79;SOR=1 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7295,708,0 22 46681141 rs35883013 G A 638.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.652;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=6.52;ReadPosRankSum=0.696;SOR=0.693 GT:AD:DP:GQ:PL 0/1:66,32:98:99:667,0,1629 22 46722400 rs140054 T C 5443.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.004;ClippingRankSum=0;DB;DP=185;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.59;ReadPosRankSum=-0.957;SOR=1.018 GT:AD:DP:GQ:PL 1/1:2,182:184:99:5472,462,0 22 46760481 rs9615351 C G 2938.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0;DB;DP=255;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.57;ReadPosRankSum=0.418;SOR=0.617 GT:AD:DP:GQ:PL 0/1:132,122:254:99:2967,0,3291 22 46807510 rs34129506 G A 2325.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.467;ClippingRankSum=0;DB;DP=200;ExcessHet=3.0103;FS=1.73;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.63;ReadPosRankSum=1.728;SOR=0.63 GT:AD:DP:GQ:PL 0/1:102,98:200:99:2354,0,2479 22 46929692 rs4823561 A G 8168.77 PASS AC=2;AF=1;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8197,821,0 22 46930107 rs8141744 C T 2677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.878;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.01;ReadPosRankSum=0.986;SOR=0.68 GT:AD:DP:GQ:PL 0/1:114,109:223:99:2706,0,3142 22 46931077 rs4823850 G C 10138.8 PASS AC=2;AF=1;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=0.731 GT:AD:DP:GQ:PL 1/1:0,322:322:99:10167,966,0 22 46931793 rs1009154 G C 8536.77 PASS AC=2;AF=1;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.74;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,253:253:99:8565,759,0 22 46931838 rs1009155 G A 9167.77 PASS AC=2;AF=1;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.56;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,300:300:99:9196,898,0 22 47058992 rs2542040 T C 4136.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0;DB;DP=146;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.53;ReadPosRankSum=1.279;SOR=0.284 GT:AD:DP:GQ:PL 1/1:1,144:145:99:4165,394,0 22 47070550 rs55913893 T A 712.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.622;ClippingRankSum=0;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.96;ReadPosRankSum=2.067;SOR=0.573 GT:AD:DP:GQ:PL 0/1:24,31:55:99:741,0,499 22 47072477 rs2236028 G A 677.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.996;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=4.408;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.79;ReadPosRankSum=0.991;SOR=1.187 GT:AD:DP:GQ:PL 0/1:57,30:87:99:706,0,1452 22 47083012 rs2748349 T A 4160.77 PASS AC=2;AF=1;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.26;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,94:94:99:1|1:47083010_T_C:4189,283,0 22 47085924 rs35318967 G A 1251.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0;DB;DP=178;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.03;ReadPosRankSum=1.655;SOR=0.579 GT:AD:DP:GQ:PL 0/1:114,64:178:99:1280,0,2828 22 47274638 rs131869 C T 1759.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.51;ReadPosRankSum=0.002;SOR=0.733 GT:AD:DP:GQ:PL 0/1:97,88:185:99:1788,0,2151 22 49103660 rs132234 T C 6870.77 PASS AC=2;AF=1;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.4;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,226:226:99:6899,678,0 22 50277835 rs910796 T C 3032.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.784;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=-0.574;SOR=0.641 GT:AD:DP:GQ:PL 0/1:165,128:293:99:3061,0,3958 22 50277883 rs910797 A G 2794.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.181;ClippingRankSum=0;DB;DP=320;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.76;ReadPosRankSum=0.043;SOR=0.697 GT:AD:DP:GQ:PL 0/1:200,119:319:99:2823,0,4952 22 50278438 rs910798 A G 3948.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0;DB;DP=324;ExcessHet=3.0103;FS=2.38;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.19;ReadPosRankSum=1.027;SOR=0.561 GT:AD:DP:GQ:PL 0/1:166,158:324:99:3977,0,4497 22 50278568 rs910799 A G 3787.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.388;ClippingRankSum=0;DB;DP=350;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.82;ReadPosRankSum=1.15;SOR=0.626 GT:AD:DP:GQ:PL 0/1:191,159:350:99:3816,0,4457 22 50278642 rs910800 C T 3450.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.287;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.732;SOR=0.663 GT:AD:DP:GQ:PL 0/1:141,134:275:99:3479,0,3686 22 50280136 rs5770755 T C 3355.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0;DB;DP=283;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.86;ReadPosRankSum=-0.923;SOR=0.822 GT:AD:DP:GQ:PL 0/1:138,145:283:99:3384,0,3213 22 50297888 rs3922872 T C 2871.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.105;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.44;ReadPosRankSum=0.144;SOR=0.606 GT:AD:DP:GQ:PL 0/1:158,117:275:99:2900,0,4054 22 50301476 rs8135963 T C 3419.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.62;ReadPosRankSum=0.732;SOR=0.646 GT:AD:DP:GQ:PL 0/1:124,147:271:99:3448,0,2783 22 50303530 rs9616204 T C 3137.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.935;ClippingRankSum=0;DB;DP=186;ExcessHet=3.0103;FS=4.445;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.87;ReadPosRankSum=-1.686;SOR=1.052 GT:AD:DP:GQ:PGT:PID:PL 0/1:104,82:186:99:0|1:50303530_T_C:3166,0,5550 22 50303533 rs9616368 C G 3115.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.38;ClippingRankSum=0;DB;DP=189;ExcessHet=3.0103;FS=5.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.49;ReadPosRankSum=-0.98;SOR=1.085 GT:AD:DP:GQ:PGT:PID:PL 0/1:106,83:189:99:0|1:50303530_T_C:3144,0,5553 22 50307184 rs11705497 G T 4311.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0;DB;DP=329;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.11;ReadPosRankSum=-2.161;SOR=0.681 GT:AD:DP:GQ:PL 0/1:151,178:329:99:4340,0,3744 22 50312869 rs28562884 T C 1243.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0;DB;DP=104;ExcessHet=3.0103;FS=6.291;MLEAC=1;MLEAF=0.5;MQ=60.42;MQRankSum=2.04;QD=11.96;ReadPosRankSum=-3.38;SOR=1.358 GT:AD:DP:GQ:PL 0/1:52,52:104:99:1272,0,1336 22 50312979 rs9616382 C T 1264.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.71;ReadPosRankSum=0.112;SOR=0.473 GT:AD:DP:GQ:PL 0/1:33,53:86:99:1293,0,821 22 50313358 rs8137331 G C 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.378;ClippingRankSum=0;DB;DP=94;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=22.52;ReadPosRankSum=0.389;SOR=0.527 GT:AD:DP:GQ:PGT:PID:PL 0/1:40,53:93:99:0|1:50313358_G_C:2123,0,1909 22 50313359 rs9616208 G A 2094.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=21.16;ReadPosRankSum=0.931;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL 0/1:44,55:99:99:0|1:50313358_G_C:2123,0,1909 22 50313438 rs9616388 T C 1696.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.05;ReadPosRankSum=-1.243;SOR=0.583 GT:AD:DP:GQ:PL 0/1:55,75:130:99:1725,0,1246 22 50315932 . CG C 2099.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.015;ClippingRankSum=0;DP=130;ExcessHet=3.0103;FS=2.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.28;ReadPosRankSum=1.421;SOR=0.491 GT:AD:DP:GQ:PGT:PID:PL 0/1:64,65:129:99:1|0:50315902_G_C:2137,0,2531 22 50315936 . CCTCAGCAGTCAGGACCGGCCTCTCCGATTCTTACCCG C 2001.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0;DP=165;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.21;ReadPosRankSum=1.113;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL 0/1:98,66:164:99:1|0:50315902_G_C:2039,0,3509 22 50316369 rs9616209 C T 1004.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=0.151;SOR=0.665 GT:AD:DP:GQ:PL 0/1:35,43:78:99:1033,0,889 22 50316984 rs58876072 T TCTGCACTCCGGGGC 1744.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.72;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=6.963;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.76;ReadPosRankSum=-0.454;SOR=1.459 GT:AD:DP:GQ:PL 0/1:48,45:93:99:1782,0,2425 22 50319079 rs11545762 T G 740.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.46;ClippingRankSum=0;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.58;ReadPosRankSum=-0.868;SOR=0.7 GT:AD:DP:GQ:PL 0/1:38,32:70:99:769,0,953 22 50319170 rs11545763 A G 1826.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.21;ClippingRankSum=0;DB;DP=160;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=1.189;SOR=0.605 GT:AD:DP:GQ:PL 0/1:81,79:160:99:1855,0,1904 22 50356693 rs4077129 T C 11139.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.973;ClippingRankSum=0;DB;DP=366;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=30.6;ReadPosRankSum=-1.195;SOR=0.75 GT:AD:DP:GQ:PL 1/1:2,362:364:99:11168,1043,0 22 50439194 rs9617090 C T 3627.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.26;SOR=0.759 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3656,372,0 22 50439626 rs9617098 G A 1133.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.374;ClippingRankSum=0;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.88;ReadPosRankSum=2.291;SOR=0.678 GT:AD:DP:GQ:PL 0/1:42,46:88:99:1162,0,941 22 50468907 rs738333 C G 2665.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.1;ClippingRankSum=0;DB;DP=182;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.65;ReadPosRankSum=-0.014;SOR=0.778 GT:AD:DP:GQ:PL 0/1:89,93:182:99:2694,0,2436 22 50471620 rs5845912 AC A 7319.73 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.16;QD=37.16;SOR=0.745 GT:AD:DP:GQ:PL 1/1:0,197:197:99:7357,592,0 22 50480108 rs9628315 C T 8625.77 PASS AC=2;AF=1;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,304:304:99:8654,911,0 22 50547247 rs138217 A G 6114.77 PASS AC=2;AF=1;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.713 GT:AD:DP:GQ:PL 1/1:0,204:204:99:6143,611,0 22 50555619 rs138222 C T 6749.77 PASS AC=2;AF=1;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.214 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6778,685,0 22 50588131 rs138271 C T 1239.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0;DB;DP=128;ExcessHet=3.0103;FS=4.177;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.69;ReadPosRankSum=-0.322;SOR=0.877 GT:AD:DP:GQ:PL 0/1:67,61:128:99:1268,0,1629 22 50616656 rs7286904 T C 3898.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.04;SOR=3.63 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3927,353,0 22 50616806 rs5771206 A G 5758.77 PASS AC=2;AF=1;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.68;SOR=1.088 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5787,513,0 22 50639473 rs5771225 T C 3724.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.17;SOR=1.253 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3753,327,0 22 50639528 rs5771226 T C 5046.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.22;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,167:167:99:5075,501,0 22 50639636 rs6010201 C G 5087.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.93;SOR=1.24 GT:AD:DP:GQ:PL 1/1:0,170:170:99:5116,509,0 22 50639778 rs3747942 T C 4421.77 PASS AC=2;AF=1;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.677 GT:AD:DP:GQ:PL 1/1:0,143:143:99:4450,423,0 22 50639965 rs2272846 C A 6214.77 PASS AC=2;AF=1;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.88;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,208:208:99:6243,621,0 22 50644969 rs2294399 G A 1104.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13;ReadPosRankSum=0.566;SOR=0.621 GT:AD:DP:GQ:PL 0/1:38,47:85:99:1133,0,927 22 50654186 rs117539518 C T 1234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.795;ClippingRankSum=0;DB;DP=134;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.28;ReadPosRankSum=0.609;SOR=0.575 GT:AD:DP:GQ:PL 0/1:78,55:133:99:1263,0,1880 22 50657010 rs4838864 C G 6556.77 PASS AC=2;AF=1;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.97;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,193:193:99:6585,580,0 22 50657112 rs11912397 C T 3227.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.96;ClippingRankSum=0;DB;DP=293;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.05;ReadPosRankSum=-0.525;SOR=0.693 GT:AD:DP:GQ:PL 0/1:146,146:292:99:3256,0,3584 22 50658053 rs6537642 A G 5713.77 PASS AC=2;AF=1;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.81;SOR=0.778 GT:AD:DP:GQ:PL 1/1:0,169:169:99:5742,507,0 22 50658424 rs11703226 T C 2059.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.243;ClippingRankSum=0;DB;DP=162;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.8;SOR=0.694 GT:AD:DP:GQ:PL 0/1:83,79:162:99:2088,0,1972 22 50664612 rs4838865 A G 7580.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.12;SOR=0.781 GT:AD:DP:GQ:PL 1/1:0,236:236:99:7609,709,0 22 50682865 rs5771270 G A 2980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.051;ClippingRankSum=0;DB;DP=253;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.78;ReadPosRankSum=-1.272;SOR=0.791 GT:AD:DP:GQ:PL 0/1:133,120:253:99:3009,0,3267 22 50688348 rs1555048 A G 3135.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.66;SOR=0.87 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3164,288,0 22 50694297 rs1129880 A G 3387.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.308 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3416,326,0 22 50696662 rs73187284 C T 2338.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.52;SOR=0.961 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2367,246,0 22 50699668 rs2272857 A G 1910.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.106;ClippingRankSum=0;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.41;ReadPosRankSum=0.641;SOR=0.719 GT:AD:DP:GQ:PL 0/1:85,69:154:99:1939,0,2181 22 50704661 rs2076139 T C 788.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=8.244;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.13;ReadPosRankSum=-0.321;SOR=1.024 GT:AD:DP:GQ:PL 0/1:57,40:97:99:817,0,1413 22 50705059 rs742185 A G 964.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.686;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.49;ReadPosRankSum=-0.306;SOR=0.663 GT:AD:DP:GQ:PL 0/1:45,39:84:99:993,0,1141 22 50705466 rs760748 A G 6285.77 PASS AC=2;AF=1;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.07;SOR=1.018 GT:AD:DP:GQ:PL 1/1:0,196:196:99:6314,588,0 22 50716010 rs139527301 C T 1800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0;DB;DP=158;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.4;ReadPosRankSum=1.149;SOR=0.457 GT:AD:DP:GQ:PL 0/1:77,81:158:99:1829,0,1815 22 50717129 rs28718510 T G 1643.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0;DB;DP=121;ExcessHet=3.0103;FS=2.34;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.58;ReadPosRankSum=0.795;SOR=0.537 GT:AD:DP:GQ:PL 0/1:54,67:121:99:1672,0,1305 22 50722134 rs11547731 T C 2641.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.191;ClippingRankSum=0;DB;DP=226;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=1.011;SOR=0.659 GT:AD:DP:GQ:PL 0/1:113,113:226:99:2670,0,2893 22 50722408 rs79966207 T C 2159.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0;DB;DP=165;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.811;SOR=0.588 GT:AD:DP:GQ:PL 0/1:78,87:165:99:2188,0,1878 22 50724733 rs55709850 G T 773.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.68;ClippingRankSum=0;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.48;ReadPosRankSum=-1.76;SOR=0.747 GT:AD:DP:GQ:PL 0/1:29,33:62:99:802,0,711 22 50725553 rs28513473 T C 2132.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.755;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.17;ReadPosRankSum=-0.604;SOR=0.853 GT:AD:DP:GQ:PL 0/1:109,82:191:99:2161,0,2744 22 50728062 rs28379706 T C 3128.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.545;ClippingRankSum=0;DB;DP=230;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.72;ReadPosRankSum=-0.283;SOR=0.798 GT:AD:DP:GQ:PL 0/1:110,118:228:99:3157,0,2592 22 50751529 rs67248662 G C 1521.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=1.572;SOR=0.531 GT:AD:DP:GQ:PL 0/1:74,64:138:99:1550,0,1839 22 50752150 rs68178377 C T 3999.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0;DB;DP=245;ExcessHet=3.0103;FS=1.59;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.02;ReadPosRankSum=1.278;SOR=0.594 GT:AD:DP:GQ:PGT:PID:PL 0/1:127,108:235:99:0|1:50752150_C_T:4028,0,6355 22 50752169 rs73891220 G A 4030.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.608;ClippingRankSum=0;DB;DP=268;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.56;ReadPosRankSum=1.191;SOR=0.591 GT:AD:DP:GQ:PGT:PID:PL 0/1:145,114:259:99:0|1:50752150_C_T:4059,0,6620 22 50753334 rs73439311 G A 8017.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.83 GT:AD:DP:GQ:PL 1/1:0,278:278:99:8046,833,0 22 50754445 rs80243206 A T 2329.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.087;ClippingRankSum=0;DB;DP=210;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-1.609;SOR=0.775 GT:AD:DP:GQ:PL 0/1:113,97:210:99:2358,0,2724 22 50754466 rs62241230 C T 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.728;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=3.762;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.29;ReadPosRankSum=1.118;SOR=0.957 GT:AD:DP:GQ:PL 0/1:104,121:225:99:2794,0,2724 22 50754648 rs11553141 T C 8129.77 PASS AC=2;AF=1;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=0.75 GT:AD:DP:GQ:PL 1/1:0,249:249:99:8158,748,0 22 50756452 rs73439320 A G 3262.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.205;ClippingRankSum=0;DB;DP=240;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.65;ReadPosRankSum=-0.692;SOR=0.892 GT:AD:DP:GQ:PL 0/1:113,126:239:99:3291,0,2434 22 50869692 rs55712763 G C 2800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.61;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.4;ReadPosRankSum=1.18;SOR=0.736 GT:AD:DP:GQ:PL 0/1:95,114:209:99:2829,0,2412 22 50874893 rs13054572 C T 1800.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.672;ClippingRankSum=0;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.58;ReadPosRankSum=-1.256;SOR=0.653 GT:AD:DP:GQ:PL 0/1:104,84:188:99:1829,0,2364 22 50876662 rs11555194 T G 2647.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.483;ClippingRankSum=0;DB;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.63;ReadPosRankSum=1.799;SOR=0.712 GT:AD:DP:GQ:PL 0/1:88,93:181:99:2676,0,2062 22 50877166 rs4824131 G C 6742.77 PASS AC=2;AF=1;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,229:229:99:6771,687,0 22 50878196 rs13057311 G A 2273.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.394;ClippingRankSum=0;DB;DP=232;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.8;ReadPosRankSum=0.939;SOR=0.639 GT:AD:DP:GQ:PL 0/1:131,101:232:99:2302,0,3123 22 50885775 rs1053744 A G 4687.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=31.46;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4716,446,0 22 50885893 rs56853707 CCA C 1870.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.917;ClippingRankSum=0;DB;DP=124;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.5;MQ=60.35;MQRankSum=2.342;QD=15.46;ReadPosRankSum=-0.352;SOR=0.576 GT:AD:DP:GQ:PL 0/1:69,52:121:99:1908,0,2740 22 50895020 rs5771001 C T 2327.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0;DB;DP=192;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.58;ReadPosRankSum=0.355;SOR=0.651 GT:AD:DP:GQ:PL 0/1:85,100:185:99:2356,0,2179 22 50898385 . G A 2505.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.644;ClippingRankSum=0;DP=176;ExcessHet=3.0103;FS=1.9;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.24;ReadPosRankSum=-0.392;SOR=0.542 GT:AD:DP:GQ:PL 0/1:78,98:176:99:2534,0,1891 22 50902839 rs139208738 A G 2259.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0;DB;DP=167;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.074;SOR=0.45 GT:AD:DP:GQ:PL 0/1:80,86:166:99:2288,0,2050 22 50925914 rs56311845 GC G 1293.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.014;ClippingRankSum=0;DB;DP=131;ExcessHet=3.0103;FS=3.207;MLEAC=1;MLEAF=0.5;MQ=60.08;MQRankSum=1.194;QD=10.03;ReadPosRankSum=0.528;SOR=0.743 GT:AD:DP:GQ:PL 0/1:75,54:129:99:1331,0,1984 22 50926768 rs2232883 C T 1247.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.4;ReadPosRankSum=-0.976;SOR=0.702 GT:AD:DP:GQ:PL 0/1:65,55:120:99:1276,0,1689 22 50941985 rs6009975 T C 7411.77 PASS AC=2;AF=1;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,231:231:99:7440,693,0 22 50942121 rs13056405 C T 1693.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.377;ClippingRankSum=0;DB;DP=139;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.55;ReadPosRankSum=0.135;SOR=0.559 GT:AD:DP:GQ:PL 0/1:68,67:135:99:1722,0,1538 22 50943004 rs762671 C A 2992.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.587;ClippingRankSum=0;DB;DP=156;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.93;ReadPosRankSum=-0.09;SOR=0.772 GT:AD:DP:GQ:PGT:PID:PL 0/1:65,78:143:99:0|1:50943004_C_A:3021,0,3236 22 50943010 rs762670 G A 3081.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0;DB;DP=164;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.41;ReadPosRankSum=0.204;SOR=0.768 GT:AD:DP:GQ:PGT:PID:PL 0/1:69,82:151:99:0|1:50943004_C_A:3110,0,3359 22 50943232 rs8136495 G A 2810.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0;DB;DP=247;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.47;ReadPosRankSum=-0.584;SOR=0.71 GT:AD:DP:GQ:PL 0/1:128,117:245:99:2839,0,3227 22 50943423 rs762669 G A 2586.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0;DB;DP=225;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.5;ReadPosRankSum=1.121;SOR=0.65 GT:AD:DP:GQ:PL 0/1:120,105:225:99:2615,0,3266 22 50944163 rs128941 G A 2489.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0;DB;DP=213;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.69;ReadPosRankSum=1.205;SOR=0.712 GT:AD:DP:GQ:PL 0/1:106,107:213:99:2518,0,2569 22 50945256 rs131824 A G 7410.77 PASS AC=2;AF=1;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.94;SOR=1.169 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7439,696,0 22 50961169 rs131813 A G 2506.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.944;ClippingRankSum=0;DB;DP=212;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.88;ReadPosRankSum=1.545;SOR=0.93 GT:AD:DP:GQ:PL 0/1:109,102:211:99:2535,0,2706 22 50962208 rs12148 T G 2130.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.684;ClippingRankSum=0;DB;DP=187;ExcessHet=3.0103;FS=8.418;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.39;ReadPosRankSum=0.469;SOR=0.753 GT:AD:DP:GQ:PL 0/1:100,87:187:99:2159,0,2458 22 50962782 rs140523 C G 2373.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.374;ClippingRankSum=0;DB;DP=211;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.25;ReadPosRankSum=2.454;SOR=0.818 GT:AD:DP:GQ:PL 0/1:109,102:211:99:2402,0,2610 22 50964862 rs131804 G A 2688.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.625;ClippingRankSum=0;DB;DP=172;ExcessHet=3.0103;FS=5.538;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.72;ReadPosRankSum=0.251;SOR=0.413 GT:AD:DP:GQ:PL 0/1:77,94:171:99:2717,0,2003 22 50988062 rs140519 G T 11523.8 PASS AC=2;AF=1;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=0.819 GT:AD:DP:GQ:PL 1/1:0,370:370:99:11552,1111,0 22 50988193 rs131779 A G 6292.77 PASS AC=2;AF=1;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.83;SOR=3.773 GT:AD:DP:GQ:PL 1/1:0,186:186:99:6321,544,0 22 51009953 rs470117 C T 5957.77 PASS AC=2;AF=1;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,199:199:99:5986,596,0 22 51011936 rs131760 T C 3410.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=1.436 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3439,312,0 22 51015481 rs131759 G A 3968.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.07;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3997,396,0 22 51020668 rs86337 C A 3513.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.208 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3542,349,0 22 51020762 rs180979987 G A 1852.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.43;ReadPosRankSum=0.634;SOR=0.65 GT:AD:DP:GQ:PL 0/1:60,78:138:99:1881,0,1517 22 51042336 rs116947359 G C 2611.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.793;ClippingRankSum=0;DB;DP=254;ExcessHet=3.0103;FS=10.024;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=0.424;SOR=0.93 GT:AD:DP:GQ:PL 0/1:142,110:252:99:2640,0,3431 22 51042513 rs140511 C CG 11275.7 PASS AC=2;AF=1;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.11;QD=40.13;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,281:283:99:11313,851,0 22 51043278 rs3219201 G A 7114.77 PASS AC=2;AF=1;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,232:232:99:7143,695,0 22 51045190 rs1140555 C T 3513.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3542,360,0 22 51045433 rs131736 C T 3901.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.905 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3930,399,0 22 51063987 rs762674 G C 7061.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=41.06;SOR=0.95 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,172:172:99:1|1:51063987_G_C:7090,524,0 22 51064039 rs743616 G C 6750.77 PASS AC=2;AF=1;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.42;SOR=0.915 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,167:167:99:1|1:51063987_G_C:6779,505,0 22 51064141 rs762673 G A 2665.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2694,257,0 22 51117580 rs9616915 T C 3176.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.803;ClippingRankSum=0;DB;DP=272;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.5;MQ=60.04;MQRankSum=-0.929;QD=11.68;ReadPosRankSum=0.03;SOR=0.631 GT:AD:DP:GQ:PL 0/1:145,127:272:99:3205,0,3845 22 51135973 . T G 196.9 PASS AC=2;AF=1;AN=2;DP=5;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.38;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,5:5:15:1|1:51135968_CT_C:225,15,0 22 51135974 . T C 196.9 PASS AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=49.23;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:15:1|1:51135968_CT_C:225,15,0 22 51135975 . CGAAT C 187.87 PASS AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=46.97;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:15:1|1:51135968_CT_C:225,15,0 22 51135980 . T C 152.03 PASS AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=38.01;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:12:1|1:51135968_CT_C:180,12,0 22 51135983 . A C 286.8 PASS AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=71.7;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:21:1|1:51135968_CT_C:315,21,0 22 51135984 . G GGCCCCGGCCCCGCGCCCGGC 277.77 PASS AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=69.44;SOR=1.609 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:21:1|1:51135968_CT_C:315,21,0 22 51135986 . T C 286.8 PASS AC=2;AF=1;AN=2;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=95.6;SOR=2.833 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,3:3:21:1|1:51135968_CT_C:315,21,0 22 51135989 . GTT G 142.06 PASS AC=2;AF=1;AN=2;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.52;SOR=3.258 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,4:4:11:1|1:51135968_CT_C:179,11,0 22 51137249 rs1557620 T C 1101.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.165;ClippingRankSum=0;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.36;ReadPosRankSum=0.207;SOR=0.737 GT:AD:DP:GQ:PL 0/1:49,48:97:99:1130,0,1081 22 51143309 rs8141844 G C 4866.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.701;ClippingRankSum=0;DB;DP=336;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.53;ReadPosRankSum=0.482;SOR=0.661 GT:AD:DP:GQ:PL 0/1:161,174:335:99:4895,0,4163 22 51182485 rs6009961 A G 3052.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=49.64;QD=33.18;SOR=1.346 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3081,276,0 22 51183255 rs5771002 A G 1734.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.955;ClippingRankSum=0;DB;DP=116;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.5;MQ=37.97;MQRankSum=1.181;QD=14.95;ReadPosRankSum=-1.337;SOR=1.169 GT:AD:DP:GQ:PL 0/1:51,65:116:99:1763,0,1101 22 51183421 rs184517959 C T 84.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.746;ClippingRankSum=0;DB;DP=23;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=46.8;MQRankSum=-0.72;QD=4.71;ReadPosRankSum=-0.661;SOR=0.616 GT:AD:DP:GQ:PGT:PID:PL 0/1:13,5:18:99:0|1:51183421_C_T:113,0,468 22 51183427 . C T 249.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.608;ClippingRankSum=0;DP=26;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=47;MQRankSum=0.556;QD=13.15;ReadPosRankSum=1.234;SOR=0.283 GT:AD:DP:GQ:PGT:PID:PL 0/1:6,13:19:99:1|0:51183421_C_T:278,0,194 X 200860 . T C 1980.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.733;ClippingRankSum=0;DP=138;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.35;ReadPosRankSum=-0.468;SOR=0.563 GT:AD:DP:GQ:PL 0/1:60,78:138:99:2009,0,1395 X 207362 . C T 2458.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0;DP=204;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.985;SOR=0.651 GT:AD:DP:GQ:PL 0/1:101,103:204:99:2487,0,2575 X 295097 . C T 2633.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.741;ClippingRankSum=0;DP=263;ExcessHet=3.0103;FS=5.013;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.01;ReadPosRankSum=-1.548;SOR=1.004 GT:AD:DP:GQ:PL 0/1:148,115:263:99:2662,0,3552 X 295132 . T C 8084.77 PASS AC=2;AF=1;AN=2;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.51;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,274:274:99:8113,822,0 X 295231 . A G 7876.77 PASS AC=2;AF=1;AN=2;DP=264;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=1.013 GT:AD:DP:GQ:PL 1/1:0,263:263:99:7905,789,0 X 299360 . G A 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.03;ClippingRankSum=0;DP=161;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.5;MQ=60.07;MQRankSum=-0.956;QD=10.33;ReadPosRankSum=1.206;SOR=0.589 GT:AD:DP:GQ:PL 0/1:82,77:159:99:1671,0,2002 X 299362 . A G 5910.77 PASS AC=2;AF=1;AN=2;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.07;QD=36.04;SOR=0.964 GT:AD:DP:GQ:PL 1/1:0,164:164:99:5939,492,0 X 299501 . C T 2726.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.609;ClippingRankSum=0;DP=214;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.8;ReadPosRankSum=-1.003;SOR=0.681 GT:AD:DP:GQ:PGT:PID:PL 0/1:108,105:213:99:0|1:299481_C_A:2755,0,2631 X 299591 . A G 4879.77 PASS AC=2;AF=1;AN=2;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=0.903 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4908,465,0 X 299635 . C T 1497.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0;DP=136;ExcessHet=3.0103;FS=3.11;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.01;ReadPosRankSum=-0.599;SOR=0.469 GT:AD:DP:GQ:PL 0/1:66,70:136:99:1526,0,1632 X 302139 . G C 2256.77 PASS AC=2;AF=1;AN=2;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.09;SOR=1.091 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2285,225,0 X 322161 . A G 3469.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.555;ClippingRankSum=0;DP=311;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.16;ReadPosRankSum=-0.899;SOR=0.84 GT:AD:DP:GQ:PL 0/1:166,145:311:99:3498,0,3732 X 322257 . G A 3288.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.33;ClippingRankSum=0;DP=290;ExcessHet=3.0103;FS=0.43;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.42;ReadPosRankSum=1.654;SOR=0.747 GT:AD:DP:GQ:PL 0/1:143,145:288:99:3317,0,3419 X 585121 . C CT,CTT 2250.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0;DP=150;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.14;MQRankSum=0;QD=18.6;ReadPosRankSum=1.401;SOR=0.621 GT:AD:DP:GQ:PL 1/2:20,58,43:135:99:2288,625,767,721,0,1194 X 591926 . T G 5450.77 PASS AC=2;AF=1;AN=2;DP=175;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.15;SOR=1.017 GT:AD:DP:GQ:PL 1/1:0,175:175:99:5479,525,0 X 619504 . CT C 778.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.333;ClippingRankSum=0;DP=117;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=2.037;QD=7.95;ReadPosRankSum=-0.172;SOR=0.765 GT:AD:DP:GQ:PL 0/1:56,42:112:99:816,0,1090 X 619543 . G A 961.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0;DP=120;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=-0.671;QD=8.15;ReadPosRankSum=0.352;SOR=0.876 GT:AD:DP:GQ:PL 0/1:69,49:118:99:990,0,1554 X 1404832 . T G 4157.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.301;ClippingRankSum=0;DP=349;ExcessHet=3.0103;FS=1.27;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.09;ReadPosRankSum=1.303;SOR=0.622 GT:AD:DP:GQ:PL 0/1:170,174:344:99:4186,0,3976 X 1407796 . CAT C 10330.7 PASS AC=2;AF=1;AN=2;DP=244;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=61.4;QD=42.51;SOR=1.275 GT:AD:DP:GQ:PL 1/1:0,243:243:99:10368,731,0 X 1422868 . G A 2002.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.198;ClippingRankSum=0;DP=209;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.72;ReadPosRankSum=1.712;SOR=0.691 GT:AD:DP:GQ:PL 0/1:113,93:206:99:2031,0,2871 X 1460740 . A G 4416.77 PASS AC=2;AF=1;AN=2;DP=145;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.67;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,144:144:99:4445,432,0 X 1471138 . G T 3099.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.697;ClippingRankSum=0;DP=252;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.35;ReadPosRankSum=2.26;SOR=0.92 GT:AD:DP:GQ:PL 0/1:126,125:251:99:3128,0,3067 X 1497644 . G C 1824.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0;DP=175;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.67;ReadPosRankSum=0.324;SOR=0.725 GT:AD:DP:GQ:PL 0/1:88,83:171:99:1853,0,2017 X 1500009 . T C 1305.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.285;ClippingRankSum=0;DP=119;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.97;ReadPosRankSum=-3.944;SOR=0.73 GT:AD:DP:GQ:PL 0/1:67,52:119:99:1334,0,1616 X 1506318 . C G 6859.77 PASS AC=2;AF=1;AN=2;DP=221;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.04;SOR=1.035 GT:AD:DP:GQ:PL 1/1:0,221:221:99:6888,663,0 X 1508324 . G A 3234.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0;DP=271;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.98;ReadPosRankSum=-2.182;SOR=0.753 GT:AD:DP:GQ:PL 0/1:135,135:270:99:3263,0,3342 X 1531765 . C G 2695.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.089;ClippingRankSum=0;DP=133;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.27;ReadPosRankSum=0.333;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:62,71:133:99:0|1:1531765_C_G:2724,0,2535 X 1537002 . C G 1959.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.324;ClippingRankSum=0;DP=151;ExcessHet=3.0103;FS=2.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.98;ReadPosRankSum=-1.107;SOR=0.462 GT:AD:DP:GQ:PL 0/1:73,78:151:99:1988,0,1730 X 1537013 . C T 1664.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0;DP=142;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.72;ReadPosRankSum=1.27;SOR=0.804 GT:AD:DP:GQ:PL 0/1:74,68:142:99:1693,0,1921 X 1537881 . C T 2821.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0;DP=222;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.77;ReadPosRankSum=-0.18;SOR=0.638 GT:AD:DP:GQ:PL 0/1:101,120:221:99:2850,0,2372 X 1537953 . C T 2569.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0;DP=250;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.251;SOR=0.728 GT:AD:DP:GQ:PL 0/1:127,121:248:99:2598,0,2972 X 1540706 . A G 1642.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.083;ClippingRankSum=0;DP=150;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.03;ReadPosRankSum=0.347;SOR=0.566 GT:AD:DP:GQ:PL 0/1:81,68:149:99:1671,0,1966 X 1544482 . C T 2875.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.721;ClippingRankSum=0;DP=213;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.5;ReadPosRankSum=-0.604;SOR=0.773 GT:AD:DP:GQ:PL 0/1:96,117:213:99:2904,0,2103 X 1546792 . G A 3167.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0;DP=307;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=10.35;ReadPosRankSum=0.489;SOR=0.849 GT:AD:DP:GQ:PL 0/1:170,136:306:99:3196,0,4348 X 1546842 . A G 3848.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.489;ClippingRankSum=0;DP=298;ExcessHet=3.0103;FS=8.726;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.92;ReadPosRankSum=-1.737;SOR=0.714 GT:AD:DP:GQ:PL 0/1:144,154:298:99:3877,0,3588 X 1546876 . A G 3906.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.917;ClippingRankSum=0;DP=312;ExcessHet=3.0103;FS=0.41;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.817;SOR=0.654 GT:AD:DP:GQ:PL 0/1:153,158:311:99:3935,0,3570 X 1554649 . T C 2079.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.978;ClippingRankSum=0;DP=123;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.91;ReadPosRankSum=-0.136;SOR=0.697 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,56:123:99:0|1:1554649_T_C:2108,0,3288 X 1554655 . T C 2026.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.338;ClippingRankSum=0;DP=121;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.75;ReadPosRankSum=1.082;SOR=0.705 GT:AD:DP:GQ:PGT:PID:PL 0/1:67,54:121:99:0|1:1554649_T_C:2055,0,3294 X 1713021 . C T 7891.77 PASS AC=2;AF=1;AN=2;DP=268;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.45;SOR=0.739 GT:AD:DP:GQ:PL 1/1:0,268:268:99:7920,803,0 X 1719897 . C G 12477.8 PASS AC=2;AF=1;AN=2;DP=417;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.815 GT:AD:DP:GQ:PL 1/1:0,414:414:99:12506,1241,0 X 1755460 . TG T 3172.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.17;ClippingRankSum=0;DP=208;ExcessHet=3.0103;FS=1.1;MLEAC=1;MLEAF=0.5;MQ=60.1;MQRankSum=1.531;QD=15.33;ReadPosRankSum=-0.783;SOR=0.817 GT:AD:DP:GQ:PL 0/1:111,96:207:99:3210,0,3784 X 2139200 . T C 1956.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0;DP=157;ExcessHet=3.0103;FS=4.693;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.46;ReadPosRankSum=-0.095;SOR=0.842 GT:AD:DP:GQ:PL 0/1:72,85:157:99:1985,0,1617 X 2161129 . C G 6701.77 PASS AC=2;AF=1;AN=2;DP=223;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.05;SOR=0.72 GT:AD:DP:GQ:PL 1/1:0,223:223:99:6730,669,0 X 2632482 . C T 545.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.099;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=3.615;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.25;ReadPosRankSum=-1.055;SOR=1.029 GT:AD:DP:GQ:PL 0/1:32,27:59:99:574,0,688 X 2724760 rs3749988 T C 1745.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.16;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1774,186,0 X 2748253 rs6642032 G C 1509.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.2;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1538,150,0 X 2777985 rs2306734 C T 1718.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.15;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1747,171,0 X 2779570 rs2306735 A G 1605.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.74;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1634,162,0 X 2835831 rs75490251 C T 194.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.35;ReadPosRankSum=-0.119;SOR=0.693 GT:AD:DP:GQ:PL 0/1:67,16:83:99:223,0,1990 X 2835863 rs78034736 G T 579.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=5.47;ReadPosRankSum=-0.479;SOR=0.976 GT:AD:DP:GQ:PL 0/1:77,29:106:99:608,0,2356 X 2835964 rs73632972 G A 1530.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9;ReadPosRankSum=0.202;SOR=0.741 GT:AD:DP:GQ:PGT:PID:PL 0/1:123,47:170:99:0|1:2835964_G_A:1559,0,4916 X 2835985 . G A 1686.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.707;ClippingRankSum=0;DP=187;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.22;ReadPosRankSum=-1.655;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,48:183:99:0|1:2835964_G_A:1715,0,5515 X 2835989 rs143238998 A C 1736.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.202;ClippingRankSum=0;DB;DP=190;ExcessHet=3.0103;FS=1.3;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.34;ReadPosRankSum=-2.405;SOR=0.812 GT:AD:DP:GQ:PGT:PID:PL 0/1:135,51:186:99:0|1:2835964_G_A:1765,0,5680 X 2835993 . G A 1727.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0;DP=192;ExcessHet=3.0103;FS=0.62;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.19;ReadPosRankSum=-1.521;SOR=0.763 GT:AD:DP:GQ:PGT:PID:PL 0/1:140,48:188:99:0|1:2835964_G_A:1756,0,5806 X 2835995 rs150899882 C A 1550.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0;DB;DP=191;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=8.29;ReadPosRankSum=-1.699;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL 0/1:139,48:187:99:0|1:2835964_G_A:1579,0,5993 X 2835998 rs113556864 CCCACGCCGG C 1428.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.231;ClippingRankSum=0;DB;DP=204;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=7.14;ReadPosRankSum=-1.504;SOR=0.965 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,46:200:99:0|1:2835964_G_A:1466,0,6592 X 2836041 rs67272620 A T 2427.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.464;ClippingRankSum=0;DB;DP=223;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.09;ReadPosRankSum=-2.619;SOR=0.845 GT:AD:DP:GQ:PGT:PID:PL 0/1:154,65:219:99:0|1:2836041_A_T:2456,0,6564 X 2836047 rs67359049 C T 2651.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.419;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=11.73;ReadPosRankSum=-2.634;SOR=0.925 GT:AD:DP:GQ:PGT:PID:PL 0/1:156,70:226:99:0|1:2836041_A_T:2680,0,6547 X 2836060 rs113318393 G A 3031.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.8;ClippingRankSum=0;DB;DP=252;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.82;SOR=0.81 GT:AD:DP:GQ:PGT:PID:PL 0/1:166,85:251:99:0|1:2836041_A_T:3060,0,7043 X 2836084 rs73632973 C G 3847.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0;DB;DP=284;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=13.6;ReadPosRankSum=-1.648;SOR=0.888 GT:AD:DP:GQ:PGT:PID:PL 0/1:167,116:283:99:0|1:2836041_A_T:3876,0,6558 X 2836138 rs73632974 G A 3025.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0;DB;DP=322;ExcessHet=3.0103;FS=10.497;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.46;ReadPosRankSum=1.832;SOR=0.424 GT:AD:DP:GQ:PL 0/1:180,140:320:99:3054,0,4404 X 2836181 rs73632975 A T 4796.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.817;ClippingRankSum=0;DB;DP=282;ExcessHet=3.0103;FS=12.92;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.07;ReadPosRankSum=-2.053;SOR=0.322 GT:AD:DP:GQ:PGT:PID:PL 0/1:151,130:281:99:0|1:2836181_A_T:4825,0,5755 X 2836184 rs73632976 C T 4707.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.01;ClippingRankSum=0;DB;DP=277;ExcessHet=3.0103;FS=8.581;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=17.06;ReadPosRankSum=-1.797;SOR=0.386 GT:AD:DP:GQ:PGT:PID:PL 0/1:150,126:276:99:0|1:2836181_A_T:4736,0,5789 X 2836211 rs73632977 A T 2268.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.86;ClippingRankSum=0;DB;DP=229;ExcessHet=3.0103;FS=11.453;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.99;ReadPosRankSum=-0.916;SOR=0.299 GT:AD:DP:GQ:PL 0/1:127,100:227:99:2297,0,3173 X 2836238 rs73632978 G A 1711.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.43;ClippingRankSum=0;DB;DP=183;ExcessHet=3.0103;FS=5.8;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=9.41;ReadPosRankSum=2.31;SOR=0.374 GT:AD:DP:GQ:PL 0/1:106,76:182:99:1740,0,2922 X 2836283 rs115556892 A G 2197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.35;ReadPosRankSum=0.157;SOR=0.621 GT:AD:DP:GQ:PGT:PID:PL 0/1:52,56:108:99:0|1:2836283_A_G:2226,0,2009 X 2836285 rs114112932 T C 2197.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.726;ClippingRankSum=0;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.73;ReadPosRankSum=-0.272;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL 0/1:50,56:106:99:0|1:2836283_A_G:2226,0,2009 X 2852915 rs11055 C T 2523.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.69;QD=31.95;SOR=1.7 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2552,237,0 X 2852951 rs11222 G A 2480.77 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.65;QD=31.01;SOR=1.096 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2509,240,0 X 2856155 rs35143646 C T 5677.77 PASS AC=2;AF=1;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,187:187:99:5706,560,0 X 3228411 rs1635233 G A 4138.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.88;QD=30.89;SOR=0.851 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4167,402,0 X 3228653 rs1726208 G C 166.84 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.96;QD=27.81;SOR=3.912 GT:AD:DP:GQ:PL 1/1:0,6:6:18:195,18,0 X 3228663 rs1635234 G C 197.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.66;QD=28.26;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,7:7:21:226,21,0 X 3228891 rs1635235 A G 4747.77 PASS AC=2;AF=1;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=57.7;QD=30.63;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,155:155:99:4776,465,0 X 3235724 rs1635242 C T 3167.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3196,306,0 X 3238167 rs1635245 T G 2605.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.93;QD=31.02;SOR=0.791 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2634,252,0 X 3238733 rs1974522 G A 2647.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2676,261,0 X 3239545 rs1726199 C T 2978.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.71;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3007,291,0 X 3240343 rs1635246 G A 3455.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.79;SOR=0.918 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3484,347,0 X 3241050 rs1635247 G A 2640.77 PASS AC=2;AF=1;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.07;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2669,255,0 X 3241256 rs5983119 T C 3267.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=0.732 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3296,306,0 X 3241284 rs1635248 A G 3433.77 PASS AC=2;AF=1;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3462,345,0 X 3241317 rs1635249 T C 3443.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.18;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3472,354,0 X 3241791 rs1635250 G A 2663.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.74;QD=29.93;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2692,267,0 X 3539376 rs369523977 CA C 126.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.728;ClippingRankSum=0;DB;DP=54;ExcessHet=3.0103;FS=4.307;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.17;ReadPosRankSum=0.142;SOR=0.292 GT:AD:DP:GQ:PL 0/1:29,11:47:99:164,0,656 X 3592725 rs10871864 G A 2363.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.93;QD=31.52;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2392,225,0 X 3631167 rs3752362 A G 4760.77 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.94;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,159:159:99:4789,477,0 X 6451777 rs77413590 G C 2765.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.67;ClippingRankSum=0;DB;DP=439;ExcessHet=3.0103;FS=15.967;MLEAC=1;MLEAF=0.5;MQ=48.64;MQRankSum=-4.926;QD=6.39;ReadPosRankSum=-5.329;SOR=1.895 GT:AD:DP:GQ:PGT:PID:PL 0/1:346,87:433:99:0|1:6451777_G_C:2794,0,14255 X 6451778 rs1058244 C T 3017.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=4.241;ClippingRankSum=0;DB;DP=440;ExcessHet=3.0103;FS=15.973;MLEAC=1;MLEAF=0.5;MQ=48.62;MQRankSum=-4.892;QD=6.95;ReadPosRankSum=-5.053;SOR=1.887 GT:AD:DP:GQ:PGT:PID:PL 0/1:347,87:434:99:0|1:6451777_G_C:3046,0,14237 X 6451791 rs74393938 C T 3887.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.313;ClippingRankSum=0;DB;DP=463;ExcessHet=3.0103;FS=8.673;MLEAC=1;MLEAF=0.5;MQ=48.9;MQRankSum=-3.718;QD=8.53;ReadPosRankSum=-6.349;SOR=1.331 GT:AD:DP:GQ:PGT:PID:PL 0/1:336,120:456:99:0|1:6451777_G_C:3916,0,13969 X 6451809 . TCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCCTCCAC T 3731.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=3.054;ClippingRankSum=0;DP=515;ExcessHet=3.0103;FS=12.259;MLEAC=1;MLEAF=0.5;MQ=46.23;MQRankSum=-0.057;QD=7.3;ReadPosRankSum=-0.6;SOR=1.559 GT:AD:DP:GQ:PGT:PID:PL 0/1:391,120:511:99:0|1:6451777_G_C:3769,0,15722 X 6975752 rs5978220 G T 2768.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=1.061 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2797,279,0 X 6975782 rs868756 C G 2699.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.911 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2728,267,0 X 6995315 rs2379206 C T 1190.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.77;SOR=1.151 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1219,120,0 X 7812017 rs78342118 C T 11662.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.42;ClippingRankSum=0;DB;DP=345;ExcessHet=3.0103;FS=18.291;MLEAC=2;MLEAF=1;MQ=42.92;MQRankSum=1.165;QD=34.3;ReadPosRankSum=8.079;SOR=0.197 GT:AD:DP:GQ:PL 1/1:43,297:340:99:11691,823,0 X 7812052 rs79139778 G A 9037.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-10.142;ClippingRankSum=0;DB;DP=313;ExcessHet=3.0103;FS=46.838;MLEAC=1;MLEAF=0.5;MQ=44.6;MQRankSum=5.051;QD=29.06;ReadPosRankSum=8.757;SOR=0.157 GT:AD:DP:GQ:PL 0/1:77,234:311:99:9066,0,2041 X 7812065 rs28506890 A G 1138.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=12.787;ClippingRankSum=0;DB;DP=280;ExcessHet=3.0103;FS=87.583;MLEAC=1;MLEAF=0.5;MQ=44.31;MQRankSum=-9.198;QD=4.07;ReadPosRankSum=-6.56;SOR=5.283 GT:AD:DP:GQ:PGT:PID:PL 0/1:237,43:280:99:0|1:7812065_A_G:1167,0,9813 X 7812066 rs28641932 G C 1092.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=12.621;ClippingRankSum=0;DB;DP=278;ExcessHet=3.0103;FS=84.3;MLEAC=1;MLEAF=0.5;MQ=44.24;MQRankSum=-9.919;QD=3.93;ReadPosRankSum=-6.348;SOR=5.186 GT:AD:DP:GQ:PGT:PID:PL 0/1:237,41:278:99:0|1:7812065_A_G:1121,0,9826 X 8434104 . GA G 181.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0;ClippingRankSum=-0;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.85;MQRankSum=0.967;QD=30.3;ReadPosRankSum=-0.524;SOR=1.329 GT:AD:DP:GQ:PL 1/1:2,4:6:18:219,18,0 X 8434107 . GAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGGTGGAAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGGTGGAA G 143.73 PASS AC=1;AF=0.5;AN=2;DP=113;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=40.46;QD=23.96;SOR=0.307 GT:AD:DP:GQ:PL 0/1:6,0:6:99:181,0,181 X 8434367 rs139169782 C T 11804.8 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0;DB;DP=325;ExcessHet=3.0103;FS=2.27;MLEAC=2;MLEAF=1;MQ=52.52;MQRankSum=2.769;QD=36.77;ReadPosRankSum=3.098;SOR=0.642 GT:AD:DP:GQ:PGT:PID:PL 1/1:3,318:321:99:1|1:8434367_C_T:11833,870,0 X 8434432 rs201843744 A G 8679.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.755;ClippingRankSum=0;DB;DP=196;ExcessHet=3.0103;FS=4.186;MLEAC=2;MLEAF=1;MQ=53.46;MQRankSum=1.648;QD=44.74;ReadPosRankSum=-0.695;SOR=1.073 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,193:194:99:1|1:8434367_C_T:8708,551,0 X 8434433 rs200295115 G C 8605.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.743;ClippingRankSum=0;DB;DP=195;ExcessHet=3.0103;FS=4.163;MLEAC=2;MLEAF=1;MQ=53.42;MQRankSum=1.644;QD=44.59;ReadPosRankSum=-0.69;SOR=1.058 GT:AD:DP:GQ:PGT:PID:PL 1/1:1,192:193:99:1|1:8434367_C_T:8634,542,0 X 8503641 rs809446 G A 1545.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.83;QD=30.92;SOR=1.27 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1574,150,0 X 8504833 rs808119 C T 1198.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.88;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1227,126,0 X 8764319 . G GT 34.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0;DP=33;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.09;ReadPosRankSum=-1.426;SOR=0.446 GT:AD:DP:GQ:PL 0/1:26,6:32:72:72,0,559 X 9859098 rs6640543 A G 4648.77 PASS AC=2;AF=1;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.19;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,171:171:99:4677,512,0 X 10085674 rs6530368 T C 6376.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.51;ClippingRankSum=0;DB;DP=216;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.52;ReadPosRankSum=-0.599;SOR=0.379 GT:AD:DP:GQ:PL 1/1:1,215:216:99:6405,607,0 X 11272836 . CA C 280.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.567;ClippingRankSum=0;DP=84;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.86;MQRankSum=0;QD=6.24;ReadPosRankSum=-1.083;SOR=0.686 GT:AD:DP:GQ:PL 0/1:24,21:63:99:318,0,360 X 11793084 . A AT 97.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0;DP=38;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.57;ReadPosRankSum=-0.12;SOR=0.315 GT:AD:DP:GQ:PL 0/1:29,9:38:99:135,0,588 X 12722616 rs4469660 C G 1083.77 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.88;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1112,102,0 X 12809661 rs1731469 G A 5194.77 PASS AC=2;AF=1;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.54;SOR=0.883 GT:AD:DP:GQ:PL 1/1:0,182:182:99:5223,544,0 X 12838934 rs917580 A G 2681.77 PASS AC=2;AF=1;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=1.03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2710,261,0 X 12903659 rs179008 A T 1358.77 PASS AC=2;AF=1;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.91;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1387,141,0 X 12939928 rs2109135 T C 2804.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.82;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2833,273,0 X 15415583 rs8094 C T 1549.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1578,165,0 X 15792527 rs4364812 T A 173.8 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.13;QD=24.83;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,7:7:21:202,21,0 X 15800600 rs4830548 A G 1390.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.91;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1419,135,0 X 15800751 rs1808 G A 2260.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.75;SOR=0.92 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2289,228,0 X 16859628 rs5924530 G A 3442.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3471,359,0 X 16876980 rs4828536 G A 1795.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.44;SOR=1.292 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1824,183,0 X 17073092 rs73189116 C T 2094.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.48;QD=28.7;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2123,219,0 X 17705850 rs5901624 C CT 1657.73 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.83;SOR=1.473 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1695,147,0 X 17819377 rs6527818 T C 3032.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.95;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3061,294,0 X 18582646 rs371996193 GAT G 72.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.31;ReadPosRankSum=-0.079;SOR=0.892 GT:AD:DP:GQ:PL 0/1:17,5:22:99:110,0,490 X 18800531 . CTT C,CT 534.73 PASS AC=1,1;AF=0.5,0.5;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0;DP=30;ExcessHet=3.0103;FS=3.522;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60;MQRankSum=0;QD=22.28;ReadPosRankSum=0.193;SOR=0.707 GT:AD:DP:GQ:PL 1/2:1,9,14:27:99:572,266,278,211,0,160 X 19482476 rs5909299 C T 2506.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.17;SOR=1.08 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2535,267,0 X 23398214 rs5926304 T C 4191.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.8;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,124:124:99:4220,372,0 X 23928489 rs2707164 C T 1065.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1094,108,0 X 24593453 rs3833417 GA G 363.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.448;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.81;ReadPosRankSum=-0.122;SOR=0.941 GT:AD:DP:GQ:PL 0/1:4,19:23:41:401,0,41 X 24844699 rs11573423 C A 1108.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1137,117,0 X 25031776 . TGCC T 118.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0;DP=90;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.45;ReadPosRankSum=1.786;SOR=0.375 GT:AD:DP:GQ:PL 0/1:73,9:82:99:156,0,2960 X 27766045 rs5926895 A G 1198.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.3;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1227,108,0 X 27766776 rs45553337 G A 91.28 PASS AC=2;AF=1;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.43;SOR=2.833 GT:AD:DP:GQ:PL 1/1:0,3:3:9:119,9,0 X 27839572 rs1368769 T C 3460.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.65;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3489,318,0 X 27839617 rs12557898 G A 3108.77 PASS AC=2;AF=1;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.05;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3137,291,0 X 30236878 rs2529541 G A 3480.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.729 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3509,336,0 X 30254361 rs2071308 G A 1821.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1850,183,0 X 30254376 rs2071309 T C 2219.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.26;SOR=0.971 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2248,213,0 X 30254530 rs2071310 A G 2080.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.56;SOR=0.826 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2109,186,0 X 30261002 rs2071311 A G 4400.77 PASS AC=2;AF=1;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.66;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,139:139:99:4429,416,0 X 30261158 rs2856733 G C 4304.77 PASS AC=2;AF=1;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.65;SOR=0.816 GT:AD:DP:GQ:PL 1/1:0,136:136:99:4333,408,0 X 30577846 rs887369 A C 2265.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.774 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2294,225,0 X 30872602 rs5927629 A G 2971.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.823 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3000,288,0 X 31165667 rs200534475 AAAAG A 1699.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0;DB;DP=82;ExcessHet=3.0103;FS=2.886;MLEAC=2;MLEAF=1;MQ=60.4;MQRankSum=0.299;QD=23.28;ReadPosRankSum=0.676;SOR=0.206 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1737,162,0 X 31224684 rs2293668 A G 1236.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.17;SOR=1.206 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1265,123,0 X 31496350 rs1800280 C T 3047.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,103:103:99:3076,309,0 X 31893307 rs1800275 T G 1447.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.9;SOR=1.662 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1476,132,0 X 31983162 rs5972467 C T 2075.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.08;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2104,207,0 X 32380996 rs1801187 C T 3047.77 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.71;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3076,330,0 X 32408311 rs41303181 T C 932.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.55;SOR=1.528 GT:AD:DP:GQ:PL 1/1:0,27:27:81:961,81,0 X 32472763 rs5902031 C CT 632.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0;DB;DP=44;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=16.22;ReadPosRankSum=-0.335;SOR=0.392 GT:AD:DP:GQ:PL 0/1:9,30:44:99:670,0,108 X 32503194 rs228406 T C 1490.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.06;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1519,144,0 X 32563263 rs228373 A G 1752.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.37;SOR=1.848 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,51:51:99:1|1:32563254_TA_T:1781,151,0 X 32867945 rs79920566 T TA 1363.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=26.74;ReadPosRankSum=-0.816;SOR=0.382 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1401,127,0 X 34149267 rs1811716 C A 6043.77 PASS AC=2;AF=1;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.81;SOR=0.758 GT:AD:DP:GQ:PL 1/1:0,190:190:99:6072,570,0 X 36156447 rs376682738 AT A 69.73 PASS AC=1;AF=0.5;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;QD=23.24;SOR=1.022 GT:AD:DP:GQ:PL 0/1:0,3:5:6:56,0,6 X 36403036 rs6527569 A G 1881.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1910,183,0 X 37932886 rs4827330 A G 1786.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.36;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1815,189,0 X 37967868 rs5918476 T C 1148.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.46;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1177,117,0 X 37981474 rs56406900 T A 1657.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1686,159,0 X 38145021 rs62636730 A T 3390.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.99;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3419,318,0 X 38145631 rs200824587 CCTTCCTCCCCTTCTT C 2211.73 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.25;QD=41.73;SOR=5.709 GT:AD:DP:GQ:PL 1/1:0,53:53:99:2249,159,0 X 38145690 . TCCTTCCTCCTCTTCCCCCTCC T 1386.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0;DP=62;ExcessHet=3.0103;FS=8.023;MLEAC=2;MLEAF=1;MQ=59.62;MQRankSum=3.997;QD=37.48;ReadPosRankSum=0.263;SOR=4.863 GT:AD:DP:GQ:PL 1/1:3,34:37:53:1424,53,0 X 38146029 rs147619484 C T 2838.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.39;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2867,299,0 X 38147170 rs1801688 C T 2141.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.34;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2170,219,0 X 38147269 rs41312104 G A 1385.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.49;SOR=1.23 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1414,132,0 X 38147285 rs62653033 TTTG T 1672.73 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.02;SOR=1.67 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1710,115,0 X 38150201 rs62635008 T C 398.77 PASS AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.58;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,15:15:44:427,44,0 X 38156677 rs1801687 C T 1296.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.46;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1325,146,0 X 38169855 rs199625400 A T 1856.77 PASS AC=2;AF=1;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=1.078 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1885,195,0 X 38182130 rs111631988 T C 1025.77 PASS AC=2;AF=1;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.49;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1054,108,0 X 38182792 rs6651585 C T 915.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.35;QD=29.54;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,31:31:93:944,93,0 X 38226603 rs1800321 A G 1131.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.59;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,37:37:99:1|1:38226603_A_G:1160,111,0 X 38240577 rs200509203 CT C 564.74 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.88;ClippingRankSum=0;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.39;MQRankSum=0.416;QD=20.17;ReadPosRankSum=-1.029;SOR=0.846 GT:AD:DP:GQ:PL 1/1:2,26:28:28:602,28,0 X 39933339 rs5917933 A G 3716.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.04;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,116:116:99:3745,347,0 X 40450585 rs9014 C G 2373.77 PASS AC=2;AF=1;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.28;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2402,261,0 X 40506697 rs6610447 A G 3195.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.51;SOR=1.584 GT:AD:DP:GQ:PL 1/1:0,90:90:99:3224,270,0 X 40514322 rs11266293 G A 1598.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.61;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1627,162,0 X 40588605 . G GA 46.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=1.025;ClippingRankSum=0;DP=50;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.2;ReadPosRankSum=0.298;SOR=0.352 GT:AD:DP:GQ:PL 0/1:31,8:43:84:84,0,648 X 41043944 rs5918130 T C 1551.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.48;SOR=1.559 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1580,135,0 X 41587218 rs1023065 T C 917.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.99;SOR=0.765 GT:AD:DP:GQ:PL 1/1:0,27:27:81:946,81,0 X 44935924 rs11309294 CT C 458.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.179;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=7.164;MLEAC=1;MLEAF=0.5;MQ=61.11;MQRankSum=0.571;QD=21.84;ReadPosRankSum=0.948;SOR=0.75 GT:AD:DP:GQ:PL 1/1:2,19:29:10:435,10,0 X 47061018 rs4239964 C G 2939.77 PASS AC=2;AF=1;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.081 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2968,301,0 X 47919485 rs193081656 A T 2976.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=1.19 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3005,303,0 X 48049666 rs5906557 C T 3353.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.42;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3382,353,0 X 48054740 rs4824675 C G 2566.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.3;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2595,246,0 X 48125798 rs5952493 T C 6547.77 PASS AC=2;AF=1;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=52.85;QD=27.28;SOR=0.727 GT:AD:DP:GQ:PL 1/1:0,240:240:99:6576,720,0 X 48419024 rs146047424 T C 4397.77 PASS AC=2;AF=1;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.19;SOR=0.736 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4426,422,0 X 48460314 rs235842 A G 4613.77 PASS AC=2;AF=1;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.96;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4642,446,0 X 48690416 rs6520383 G T 3284.77 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=1.008 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3313,320,0 X 48751471 rs1128363 A G 2227.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.032 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2256,219,0 X 48759204 rs741932 C T 1453.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.96;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1482,156,0 X 48780584 rs181312786 G A 761.77 PASS AC=2;AF=1;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.21;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,28:28:84:790,84,0 X 48888074 rs3027472 T C 2287.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.92;SOR=1.457 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2316,222,0 X 49021256 rs5906744 A G 2925.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2954,270,0 X 49021537 rs5905720 G C 3654.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.84;SOR=1.028 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3683,324,0 X 49022700 rs4824462 T C 3839.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.28;SOR=1.315 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3868,336,0 X 50121146 rs11415594 A AG 3940.73 PASS AC=2;AF=1;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.1;QD=36.83;SOR=0.712 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3978,322,0 X 50350674 rs3747282 T C 2253.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0;DB;DP=89;ExcessHet=3.0103;FS=2.273;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.89;ReadPosRankSum=-0.065;SOR=0.634 GT:AD:DP:GQ:PL 1/1:3,75:78:99:2282,99,0 X 50350728 rs143151534 T TTCC 2421.73 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=42.49;SOR=0.728 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2459,178,0 X 50350758 rs201922875 C CTGCTGCTGCTGT 3236.73 PASS AC=2;AF=1;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=47.6;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,68:68:99:3274,218,0 X 51239295 rs78182391 ATCCTCGAGGCAGCC A 4532.73 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.26;QD=44.44;SOR=1.329 GT:AD:DP:GQ:PL 1/1:0,102:102:99:4570,312,0 X 51637705 . AT A 156.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0;DP=59;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.85;ReadPosRankSum=-0.111;SOR=0.683 GT:AD:DP:GQ:PL 0/1:41,14:58:99:194,0,927 X 52825546 rs2806838 C G 3151.77 PASS AC=2;AF=1;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.63;QD=29.18;SOR=0.73 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3180,324,0 X 52895579 . GGT G 1087.73 PASS AC=2;AF=1;AN=2;DP=53;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.2;QD=37.51;SOR=1.002 GT:AD:DP:GQ:PL 1/1:0,29:35:99:1029,104,0 X 53228148 rs1977364 C A 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.37;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,113:113:99:3573,339,0 X 53563589 rs426298 A G 1506.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.75;SOR=0.909 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1535,147,0 X 54044107 rs148215758 A C 1464.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1493,144,0 X 54117740 rs2495797 C A 1248.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.75;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1277,135,0 X 54209387 rs2495783 A G 6193.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.93;SOR=0.919 GT:AD:DP:GQ:PL 1/1:0,194:194:99:6222,581,0 X 54781530 rs17316491 C G 1273.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1302,129,0 X 54800637 rs35679081 CA C 240.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.868;ClippingRankSum=0;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=18.52;ReadPosRankSum=0.141;SOR=1.609 GT:AD:DP:GQ:PL 1/1:2,11:18:8:247,8,0 X 54836361 rs1043031 A G 1949.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.5;SOR=0.831 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1978,180,0 X 54836505 rs1043034 A G 2210.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=28.34;ReadPosRankSum=1.064;SOR=0.305 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2239,195,0 X 54837340 rs1043044 C T 2129.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30;SOR=0.84 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2158,213,0 X 54838077 rs2071932 C T 1012.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.37;SOR=0.746 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1041,111,0 X 54841737 rs11555927 G A 2412.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.42;SOR=1.085 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2441,245,0 X 55116466 rs1845444 C G 2335.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2364,243,0 X 55247030 rs5914273 C G 3216.77 PASS AC=2;AF=1;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.72;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3245,336,0 X 55249049 rs2148982 T C 1922.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1951,189,0 X 55514818 rs3126255 C T 3796.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3825,377,0 X 55651001 rs2375465 T C 1763.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.45;SOR=1.057 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1792,185,0 X 57162895 rs202201318 G A 677.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=42.36;SOR=5.67 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,16:16:48:1|1:57162895_G_A:706,48,0 X 57162899 rs200312689 C T 646.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=43.12;SOR=5.549 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,15:15:45:1|1:57162895_G_A:675,45,0 X 57162913 rs149111204 G T 320.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=27;QD=29.16;SOR=4.977 GT:AD:DP:GQ:PL 1/1:0,11:11:33:349,33,0 X 57405163 rs4826543 T C 3335.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.57;SOR=0.743 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3364,361,0 X 57474943 rs1821118 A T 1495.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.53;SOR=1.911 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1524,147,0 X 57475132 rs1367830 T C 2275.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.51;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2304,210,0 X 57619648 rs1057328 G T 6378.77 PASS AC=2;AF=1;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.39;QD=30.52;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,209:209:99:6407,625,0 X 65382685 rs5919015 T C 2175.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=1.163 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2204,210,0 X 65393658 rs5918591 A G 1606.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.79;SOR=1.755 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1635,147,0 X 65420609 rs1264215 A G 1315.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.33;SOR=1.556 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1344,126,0 X 65822607 rs1385698 T C 2663.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.27;SOR=0.959 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2692,273,0 X 65824986 rs1385699 C T 3564.77 PASS AC=2;AF=1;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.63;SOR=0.772 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3593,386,0 X 66765158 rs72181988 TGCAGCA T,TGCA 1670.73 PASS AC=1,1;AF=0.5,0.5;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=1,1;MLEAF=0.5,0.5;MQ=60.86;QD=32.13;SOR=1.036 GT:AD:DP:GQ:PL 1/2:0,9,43:52:99:1708,1312,1401,307,0,153 X 67652748 rs41303733 C T 1470.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.68;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1499,135,0 X 67937976 rs55962426 G A 4052.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.7;SOR=0.962 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4081,396,0 X 68381264 rs11539157 C A 3987.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4016,410,0 X 68381787 rs5937160 C T 3689.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.76;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3718,372,0 X 68382836 rs7067170 G A 4047.77 PASS AC=2;AF=1;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.98;SOR=0.769 GT:AD:DP:GQ:PL 1/1:0,135:135:99:4076,404,0 X 68725178 rs374286243 TCTG T 36.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0;DB;DP=108;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.37;ReadPosRankSum=-0.896;SOR=1.062 GT:AD:DP:GQ:PL 0/1:91,8:102:74:74,0,3873 X 69502054 rs5936549 A G 2235.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.4;SOR=0.844 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2264,207,0 X 69510335 rs1199470 C T 2531.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.43;QD=30.88;SOR=0.902 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2560,246,0 X 69652762 rs2296542 A G 946.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.69;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,33:33:99:975,99,0 X 69668463 rs2281868 A G 2122.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.33;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2151,210,0 X 69672462 rs12850410 G C 2365.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.29;SOR=1.131 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2394,207,0 X 69749852 rs1536250 A G 2795.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.38;SOR=1.366 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,63:63:99:1|1:69749852_A_G:2824,190,0 X 69749853 rs1536251 T A 2795.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.38;SOR=1.366 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,63:63:99:1|1:69749852_A_G:2824,190,0 X 69774517 rs4844240 A T 2226.77 PASS AC=2;AF=1;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.92;SOR=0.887 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2255,231,0 X 69898742 rs55853716 GA G 1082.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0;DB;DP=57;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=25.18;ReadPosRankSum=-1.2;SOR=0.537 GT:AD:DP:GQ:PL 1/1:1,42:52:99:1057,126,0 X 69964084 rs5902674 G GA 418.73 PASS AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=63.93;QD=26.17;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,16:16:48:456,48,0 X 70282696 rs34211894 A G 959.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.42;SOR=0.869 GT:AD:DP:GQ:PL 1/1:0,35:35:99:988,105,0 X 70888484 rs6418435 G A 4209.77 PASS AC=2;AF=1;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.86;SOR=0.766 GT:AD:DP:GQ:PL 1/1:0,141:141:99:4238,421,0 X 70888909 rs7889586 G A 2935.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.8;QD=29.36;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2964,299,0 X 71349753 rs12397326 G A 2993.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3022,318,0 X 71349774 rs12393722 T C 2966.77 PASS AC=2;AF=1;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.97;SOR=0.797 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2995,297,0 X 71357093 rs6625949 G A 2250.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.8;QD=27.12;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2279,249,0 X 71363415 rs6624597 C T 1089.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.94;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1118,117,0 X 71401607 rs6525589 G A 1805.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.04;SOR=1.206 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,41:41:99:1|1:71401607_G_A:1834,123,0 X 71401614 rs7058353 C A 1855.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=43.16;SOR=1.055 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,43:43:99:1|1:71401607_G_A:1884,129,0 X 71493691 rs7580 C T 2017.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.57;SOR=1.033 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2046,198,0 X 71495388 rs34563981 T TCTA 1752.73 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.94;SOR=1.236 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1790,120,0 X 71521867 rs3012627 G C 2508.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.37;SOR=0.898 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2537,218,0 X 72433663 rs369450592 GTCC G 31.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.155;ClippingRankSum=0;DB;DP=133;ExcessHet=3.0103;FS=2.776;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=0.28;ReadPosRankSum=0.863;SOR=1.048 GT:AD:DP:GQ:PL 0/1:103,9:113:69:69,0,4322 X 74494470 rs4892396 T G 3365.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.46;SOR=1.265 GT:AD:DP:GQ:PL 1/1:0,107:107:99:3394,320,0 X 74494483 rs5981831 A G 3367.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.38;SOR=1.257 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3396,312,0 X 77224879 rs62621209 C T 3360.74 PASS AC=2;AF=1;AN=2;BaseQRankSum=-1.96;ClippingRankSum=0;DB;DP=132;ExcessHet=3.0103;FS=37.304;MLEAC=2;MLEAF=1;MQ=48.11;MQRankSum=5.253;QD=25.65;ReadPosRankSum=1.236;SOR=0.138 GT:AD:DP:GQ:PL 1/1:13,118:131:6:3388,6,0 X 77298857 rs4826245 G A 1085.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.57;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1114,114,0 X 77528317 rs320995 G A 2963.77 PASS AC=2;AF=1;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.77;SOR=0.973 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2992,309,0 X 78426488 rs3810711 T C 1132.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1161,111,0 X 78426988 rs3827440 T C 3116.77 PASS AC=2;AF=1;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.17;SOR=0.733 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3145,298,0 X 79698593 rs1113265 C G 2649.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.81;SOR=0.839 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2678,258,0 X 79943569 rs3122407 T C 1242.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.24;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1271,132,0 X 79947490 . TA T 1192.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.878;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.44;MQRankSum=0.537;QD=21.3;ReadPosRankSum=0.085;SOR=0.573 GT:AD:DP:GQ:PL 1/1:5,51:66:78:1197,78,0 X 79999747 rs142085721 T G 1196.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.77;QD=29.19;SOR=2.247 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1225,122,0 X 82764040 rs5921978 A G 7798.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.61;SOR=0.882 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,171:171:99:1|1:82764040_A_G:7827,533,0 X 82764042 rs5921979 G C 7798.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.31;SOR=0.917 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,176:176:99:1|1:82764040_A_G:7827,533,0 X 84350010 rs4828326 A G 810.77 PASS AC=2;AF=1;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,28:28:84:839,84,0 X 84358864 rs5922146 C T 495.77 PASS AC=2;AF=1;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.16;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,17:17:51:524,51,0 X 84363140 rs10126146 A G 2921.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.81;QD=30.44;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2950,288,0 X 84563135 rs363774 T A 1163.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.45;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1192,131,0 X 85219021 rs10217950 T C 1262.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=1.105 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1291,131,0 X 85220598 rs10217834 G T 1569.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.54;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1598,171,0 X 86877348 rs2273050 G T 1867.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.07;SOR=0.722 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1896,206,0 X 86887244 rs222084 C T 1305.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.68;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1334,132,0 X 88008423 rs5940915 A C 1411.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.09;SOR=1.828 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1440,132,0 X 88008807 rs5984611 G A 1830.77 PASS AC=2;AF=1;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.01;SOR=0.725 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1859,183,0 X 88009322 rs5984613 A G 1071.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.62;SOR=1.483 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1100,105,0 X 89177673 rs2290380 G A 4168.77 PASS AC=2;AF=1;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.53;QD=29.78;SOR=0.877 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4197,420,0 X 99849017 rs2073162 G A 2084.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.8;SOR=0.832 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2113,225,0 X 99849051 rs2073163 T C 1737.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.96;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1766,180,0 X 99941705 rs2022039 T C 1393.77 PASS AC=2;AF=1;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.44;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1422,146,0 X 100265552 rs5921705 T A 1463.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1492,150,0 X 100357417 rs59141949 CT C 730.73 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.36;SOR=1.143 GT:AD:DP:GQ:PL 1/1:0,30:30:90:768,90,0 X 100375370 rs56066672 TA T 108 PASS AC=2;AF=1;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,4:4:12:145,12,0 X 100395663 rs2273380 G T 777.77 PASS AC=2;AF=1;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.82;SOR=1.255 GT:AD:DP:GQ:PL 1/1:0,29:29:87:806,87,0 X 100547933 rs5951328 A G 2807.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.91;SOR=0.941 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2836,264,0 X 100743826 rs5951332 A G 2569.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.95;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2598,234,0 X 100745825 rs5951333 T C 2704.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.45;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2733,258,0 X 100748078 rs5991911 A G 2662.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.71;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2691,237,0 X 100749038 rs34379067 C T 369.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.184;ClippingRankSum=0;DB;DP=32;ExcessHet=3.0103;FS=6.397;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=-1.332;QD=16.08;ReadPosRankSum=-0.394;SOR=0.061 GT:AD:DP:GQ:PGT:PID:PL 0/1:10,13:23:99:0|1:100749038_C_T:398,0,381 X 100749041 . A G 366.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.126;ClippingRankSum=0;DP=31;ExcessHet=3.0103;FS=6.397;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=-1.332;QD=15.95;ReadPosRankSum=-1.457;SOR=0.061 GT:AD:DP:GQ:PGT:PID:PL 0/1:10,13:23:99:0|1:100749038_C_T:395,0,423 X 100749050 rs190396007 C T 269.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-3.549;ClippingRankSum=0;DB;DP=29;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.37;MQRankSum=-0.77;QD=12.85;ReadPosRankSum=-1.884;SOR=0.465 GT:AD:DP:GQ:PGT:PID:PL 0/1:12,9:21:99:0|1:100749038_C_T:298,0,516 X 100749065 rs183076981 A G 56.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.43;MQRankSum=-0.375;QD=2.84;ReadPosRankSum=-2;SOR=0.083 GT:AD:DP:GQ:PGT:PID:PL 0/1:16,4:20:85:0|1:100749038_C_T:85,0,660 X 100749127 rs5951336 A G 973.77 PASS AC=2;AF=1;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.31;QD=27.82;SOR=1.675 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1002,104,0 X 100749585 rs3174476 C T 2347.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.1;SOR=0.744 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2376,234,0 X 100911066 rs3850315 C T 2709.77 PASS AC=2;AF=1;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.14;SOR=0.714 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2738,278,0 X 101091164 rs6621220 T C 3649.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2;ClippingRankSum=0;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.99;MQRankSum=0;QD=29.2;ReadPosRankSum=2.358;SOR=0.481 GT:AD:DP:GQ:PL 1/1:1,124:125:99:3678,365,0 X 101095482 rs146382081 A G 315.78 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.23;QD=35.09;SOR=4.615 GT:AD:DP:GQ:PL 1/1:0,9:9:27:344,27,0 X 101096219 rs201887839 G A 784.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=33.96;QD=32.7;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,24:24:72:813,72,0 X 101138792 rs5944882 T C 2572.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.24;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2601,262,0 X 101382005 rs5944856 G C 2658.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.82;SOR=0.821 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2687,242,0 X 101382411 rs5944857 T C 5148.77 PASS AC=2;AF=1;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.42;QD=44.01;SOR=0.745 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,117:117:99:1|1:101382411_T_C:5177,355,0 X 101382417 rs5944858 G A 5046.77 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.33;QD=44.27;SOR=0.765 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,114:114:99:1|1:101382411_T_C:5075,346,0 X 101395780 rs11408120 T TG 5223.73 PASS AC=2;AF=1;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=46.61;QD=33.49;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,156:156:99:5261,472,0 X 102755551 rs1180895 T A 4614.77 PASS AC=2;AF=1;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.48;QD=31.18;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,148:148:99:4643,443,0 X 102842041 rs11010 T C 5254.77 PASS AC=2;AF=1;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.37;SOR=0.752 GT:AD:DP:GQ:PL 1/1:0,173:173:99:5283,519,0 X 102979486 rs4907817 T C 1900.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.37;SOR=0.917 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1929,201,0 X 103267865 rs553509 C T 3787.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.79 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3816,383,0 X 103294687 rs200102787 C T 3424.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.3;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3453,362,0 X 103359423 rs139527148 C G 1541.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=35.86;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1570,129,0 X 103495090 . G GGCGCCATGGGCGGCCCGGGTGGCACAC 2671.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0;DP=399;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.39;MQRankSum=-3.148;QD=95.42;ReadPosRankSum=3.056;SOR=0.566 GT:AD:DP:GQ:PL 1/1:7,21:28:99:2700,110,0 X 104464276 rs375033944 CA C 4889.73 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=45.7;SOR=0.83 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,107:107:99:1|1:104464276_CA_C:4927,334,0 X 104464281 rs367644904 TC T 4889.73 PASS AC=2;AF=1;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.45;SOR=0.806 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,110:110:99:1|1:104464276_CA_C:4927,334,0 X 105153001 rs209372 A G 2374.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.45;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2403,233,0 X 105178329 rs188996722 A G 1734.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.36;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1763,156,0 X 107413851 rs34466065 T C 1747.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.66;SOR=1.342 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1776,171,0 X 107418906 rs4623610 A G 1349.77 PASS AC=2;AF=1;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1378,135,0 X 107426982 rs146680910 C CCTT 2549.73 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.55;QD=43.96;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2587,175,0 X 107433688 rs1042065 A G 1331.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=1.038 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1360,134,0 X 109416688 rs34813944 AT A 45.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.805;ClippingRankSum=0;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.24;ReadPosRankSum=1.141;SOR=0.818 GT:AD:DP:GQ:PL 0/1:28,9:39:83:83,0,629 X 110494528 rs201147886 GA G 42.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.825;ClippingRankSum=0;DB;DP=45;ExcessHet=3.0103;FS=1.45;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.42;ReadPosRankSum=0.162;SOR=0.368 GT:AD:DP:GQ:PL 0/1:25,5:37:80:80,0,582 X 110925461 rs146925326 C T 1727.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.8;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1756,180,0 X 111698036 rs6568050 T C 2571.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.55;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2600,237,0 X 111698613 rs7053563 T C 2660.77 PASS AC=2;AF=1;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.85;SOR=0.768 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2689,243,0 X 114418971 rs56337951 C T 479.77 PASS AC=2;AF=1;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.99;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,16:16:48:508,48,0 X 114424597 rs12009026 G A 5345.77 PASS AC=2;AF=1;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.72;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,174:174:99:5374,521,0 X 114425181 rs55659078 A AGAGGCCGCTCGCCCAACGCCCACAGCG 7046.73 PASS AC=2;AF=1;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=65.13;QD=52.2;SOR=0.937 GT:AD:DP:GQ:PL 1/1:0,135:135:99:7084,488,0 X 114425400 rs12857270 G A 4219.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.91;QD=31.97;SOR=0.755 GT:AD:DP:GQ:PL 1/1:0,132:132:99:4248,395,0 X 114426171 rs5946294 C T 4805.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.462;ClippingRankSum=0;DB;DP=217;ExcessHet=3.0103;FS=1.243;MLEAC=2;MLEAF=1;MQ=59.96;MQRankSum=1.781;QD=22.35;ReadPosRankSum=10.636;SOR=0.586 GT:AD:DP:GQ:PL 1/1:52,163:215:99:4834,299,0 X 114426905 rs151176784 C T 7407.77 PASS AC=2;AF=1;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.85;QD=43.83;SOR=0.804 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,169:169:99:1|1:114426905_C_T:7436,527,0 X 114426917 rs4911809 C T 7059.77 PASS AC=2;AF=1;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.84;QD=44.12;SOR=0.824 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,160:160:99:1|1:114426905_C_T:7088,493,0 X 117700141 rs2286977 A G 1831.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.14;SOR=1.047 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1860,171,0 X 118148229 rs2278954 A G 2514.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.58;SOR=0.786 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2543,264,0 X 118281538 rs5910522 C A 1660.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.63;SOR=0.997 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1689,174,0 X 118533423 rs5957164 T C 3833.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.49;SOR=1.227 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3862,354,0 X 118587003 rs3810755 C T 1370.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.17;SOR=1.132 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1399,140,0 X 118603844 rs371749 T G 2698.77 PASS AC=2;AF=1;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.13;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,84:86:99:2727,252,0 X 118604436 rs12390 T C 3168.77 PASS AC=2;AF=1;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.07;SOR=0.711 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3197,327,0 X 118678364 rs5910611 G A 2237.77 PASS AC=2;AF=1;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2266,216,0 X 118699320 rs5910616 A G 1378.77 PASS AC=2;AF=1;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.98;QD=34.47;SOR=1.981 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1407,120,0 X 118725232 rs41304530 A G 1807.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.64;SOR=1.034 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1836,177,0 X 118783881 rs6603539 G A 948.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.61;SOR=1.609 GT:AD:DP:GQ:PL 1/1:0,31:31:93:977,93,0 X 118787022 rs5957203 A T 983.77 PASS AC=2;AF=1;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.81;SOR=1.022 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1012,99,0 X 118892888 rs2782222 G C 5429.77 PASS AC=2;AF=1;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.85;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5458,527,0 X 118893054 rs2782223 C A 4525.77 PASS AC=2;AF=1;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.8;SOR=0.949 GT:AD:DP:GQ:PL 1/1:0,138:138:99:4554,414,0 X 118893137 rs2782224 T C 4308.77 PASS AC=2;AF=1;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.66;SOR=1.317 GT:AD:DP:GQ:PL 1/1:0,128:128:99:4337,382,0 X 118893413 rs2782225 T C 5701.77 PASS AC=2;AF=1;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.5;SOR=0.773 GT:AD:DP:GQ:PL 1/1:0,181:181:99:5730,543,0 X 118985711 rs373850121 CT C 362.75 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=15.11;ReadPosRankSum=0.76;SOR=0.749 GT:AD:DP:GQ:PL 0/1:7,17:36:63:376,0,63 X 119387833 rs201958171 C CTGA 2559.73 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.13;QD=44.91;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,57:58:99:2597,176,0 X 119576455 rs73219144 G A 1053.77 PASS AC=2;AF=1;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.73;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1082,114,0 X 119590533 rs12097 T A 710.77 PASS AC=2;AF=1;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.62;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,24:24:72:739,72,0 X 122318386 rs58044961 A AG 981.73 PASS AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=39.27;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,25:25:78:1019,78,0 X 122336600 rs11452643 T TG 1894.73 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.67;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1932,174,0 X 123468392 rs6649197 C G 399.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0;DB;DP=18;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.5;MQ=32.62;MQRankSum=-0.965;QD=22.21;ReadPosRankSum=-0.704;SOR=0.105 GT:AD:DP:GQ:PL 0/1:4,14:18:92:428,0,92 X 123540315 rs960869 G T 1452.77 PASS AC=2;AF=1;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.27;SOR=0.776 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1481,144,0 X 123654641 rs112813437 TA T 250.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.417;ClippingRankSum=0;DB;DP=77;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=4.92;ReadPosRankSum=-0.103;SOR=0.99 GT:AD:DP:GQ:PL 0/1:33,18:63:99:288,0,613 X 125954753 rs41309538 C T 3170.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.36;SOR=0.936 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3199,323,0 X 128957640 rs2275605 T C 1954.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.33;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1983,207,0 X 129147079 rs4830173 T C 3360.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3389,324,0 X 129338973 . G GA 122.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0;DP=65;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=2.45;ReadPosRankSum=-1.722;SOR=0.551 GT:AD:DP:GQ:PL 0/1:37,13:61:99:160,0,747 X 130416958 rs5932877 C T 1612.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.01;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1641,155,0 X 130420006 rs5930458 T C 2159.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=26.66;SOR=0.995 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2188,243,0 X 130420415 rs4495600 T C 1742.77 PASS AC=2;AF=1;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.23;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1771,191,0 X 130678467 rs499030 A G 2522.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.39;SOR=0.928 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2551,249,0 X 130678844 rs655415 A C 1780.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.18;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1809,177,0 X 132161673 rs41304540 C T 2190.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.6;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2219,222,0 X 132437337 rs1048369 G A 2092.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.28;SOR=0.992 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2121,222,0 X 132438872 rs1129980 C A 1273.77 PASS AC=2;AF=1;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.31;SOR=0.929 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1302,135,0 X 132458578 rs66507215 CA C 479.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.51;MQRankSum=0.49;QD=26.65;ReadPosRankSum=-1.938;SOR=0.922 GT:AD:DP:GQ:PL 1/1:2,16:29:40:398,40,0 X 132549013 rs2073288 G A 2586.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.43;SOR=1.13 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2615,272,0 X 133379551 rs2428577 C T 2295.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.33;SOR=0.721 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2324,213,0 X 134185997 rs2498776 T A 6941.77 PASS AC=2;AF=1;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.29;SOR=0.76 GT:AD:DP:GQ:PL 1/1:0,215:215:99:6970,644,0 X 134421168 rs1129093 C T 2080.77 PASS AC=2;AF=1;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.53;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2109,197,0 X 134708007 . CT C 102.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.154;ClippingRankSum=0;DP=56;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60.19;MQRankSum=1.613;QD=2.14;ReadPosRankSum=-0.374;SOR=0.762 GT:AD:DP:GQ:PL 0/1:37,11:52:99:140,0,761 X 134978425 rs5930805 G A 907.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.28;SOR=0.756 GT:AD:DP:GQ:PL 1/1:0,31:31:93:936,93,0 X 134986700 rs12014884 T C 1851.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.23;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1880,204,0 X 134991078 rs5974570 A G 2386.77 PASS AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.21;SOR=0.824 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2415,237,0 X 134994005 rs4829799 T C 1894.77 PASS AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.58;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1923,180,0 X 134994054 rs4829584 G A 1517.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=0.774;ClippingRankSum=0;DB;DP=64;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=23.72;ReadPosRankSum=0.387;SOR=0.899 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1546,143,0 X 135080623 rs372117398 C CT 366.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0;DB;DP=22;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=20.37;ReadPosRankSum=0.815;SOR=0.43 GT:AD:DP:GQ:PL 0/1:3,15:22:5:371,0,5 X 135426693 rs4829829 A G 1805.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.44;SOR=0.767 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1834,162,0 X 135426968 rs5930931 C A 1295.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.13;SOR=1.055 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1324,129,0 X 135428828 rs147143419 C T 1807.77 PASS AC=2;AF=1;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.64;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1836,182,0 X 135429503 rs4829830 C A 1669.77 PASS AC=2;AF=1;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.804 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1698,165,0 X 135430044 rs877761 T C 1944.77 PASS AC=2;AF=1;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.19;SOR=0.91 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1973,207,0 X 135430483 rs912002 T C 1964.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.23;SOR=0.854 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1993,194,0 X 135431236 rs5930932 T C 1702.77 PASS AC=2;AF=1;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.87;SOR=0.8 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1731,170,0 X 135431358 rs5930933 C T 1911.77 PASS AC=2;AF=1;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.793 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1940,183,0 X 135435475 rs5903915 AT A 794.73 PASS AC=2;AF=1;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.84;SOR=0.818 GT:AD:DP:GQ:PL 1/1:0,32:32:96:832,96,0 X 135474420 rs1329546 C A 1039.77 PASS AC=2;AF=1;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.29;QD=28.88;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1068,108,0 X 135474444 rs34255702 AGAT A 1786.73 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.51;QD=43.58;SOR=0.741 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1824,123,0 X 135480126 rs5974595 T C 1529.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.6;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1558,150,0 X 135496398 rs5930942 G A 1279.77 PASS AC=2;AF=1;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.09;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1308,132,0 X 135961586 rs201673579 TG T 55.73 INDEL_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=0.282;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=0.501;QD=0.63;ReadPosRankSum=-1.602;SOR=0.765 GT:AD:DP:GQ:PL 0/1:72,16:88:93:93,0,1659 X 135961587 rs2011584 G T 1421.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0;DB;DP=98;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.5;MQ=59.84;MQRankSum=-0.515;QD=16.53;ReadPosRankSum=1.25;SOR=0.502 GT:AD:DP:GQ:PL 0/1:20,66:88:99:1450,0,235 X 138679712 rs1051619 T A 1222.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.11;SOR=1.127 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1251,126,0 X 138698652 rs68033160 GA G 812.73 PASS AC=2;AF=1;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=40.64;SOR=1.721 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,20:20:60:1|1:138698652_GA_G:850,60,0 X 138880835 rs45465799 C T 760.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.18;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,27:27:81:789,81,0 X 138897130 rs2491014 A C 837.77 PASS AC=2;AF=1;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=1.697 GT:AD:DP:GQ:PL 1/1:0,26:26:78:866,78,0 X 139866477 rs41299075 T C 3354.77 PASS AC=2;AF=1;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.73;SOR=0.85 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3383,351,0 X 140785677 rs142537948 A T 7349.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=47.51;QD=45.65;SOR=0.985 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,161:161:99:1|1:140785677_A_T:7378,502,0 X 140785678 rs150598024 G C 7349.77 PASS AC=2;AF=1;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=48.01;QD=44.01;SOR=0.944 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,167:167:99:1|1:140785677_A_T:7378,502,0 X 140785696 rs2983592 T C 5597.77 PASS AC=2;AF=1;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=50.45;QD=31.81;SOR=0.763 GT:AD:DP:GQ:PL 1/1:0,176:176:99:5626,528,0 X 140983064 rs176024 G A 2988.77 PASS AC=2;AF=1;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.59;SOR=0.884 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3017,303,0 X 140983103 rs176025 C T 3453.77 PASS AC=2;AF=1;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.78;SOR=0.726 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3482,359,0 X 140983127 rs176026 G A 3672.77 PASS AC=2;AF=1;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.38;SOR=0.845 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3701,375,0 X 140993642 rs176037 C T 3865.77 PASS AC=2;AF=1;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.62;SOR=0.782 GT:AD:DP:GQ:PL 1/1:0,115:115:99:3894,345,0 X 140994171 rs176047 C G 8218.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=2.018;ClippingRankSum=0;DB;DP=275;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.91;MQRankSum=-0.31;QD=29.89;ReadPosRankSum=-0.626;SOR=0.26 GT:AD:DP:GQ:PL 1/1:1,274:275:99:8247,812,0 X 140995712 rs41299076 G T 3976.77 PASS AC=2;AF=1;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.77 GT:AD:DP:GQ:PL 1/1:0,133:133:99:4005,397,0 X 142795225 rs3859898 G A 7811.77 PASS AC=2;AF=1;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=56.12;QD=28.2;SOR=0.807 GT:AD:DP:GQ:PL 1/1:0,277:277:99:7840,826,0 X 144904252 rs3810704 G A 2749.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.55;SOR=0.784 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2778,270,0 X 144904882 rs2748588 T C 3734.77 PASS AC=2;AF=1;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.36;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3763,369,0 X 147088249 rs764631 C T 1787.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.09;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1816,198,0 X 148055144 rs5980615 A G 2454.77 PASS AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.58;SOR=1.112 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2483,248,0 X 148627384 rs145921071 A G 2079.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.86;QD=34.66;SOR=1.812 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,60:60:99:1|1:148627384_A_G:2108,180,0 X 148628490 . A T 1227.77 PASS AC=2;AF=1;AN=2;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=45.32;QD=29.23;SOR=0.788 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1256,126,0 X 149013727 rs5983916 A G 3842.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.57;SOR=0.762 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3871,354,0 X 149098349 . A AAGT 2672.73 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.246;ClippingRankSum=0;DP=101;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=41.04;MQRankSum=-1.051;QD=28.74;ReadPosRankSum=-0.477;SOR=1.191 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2710,228,0 X 149638920 rs41313406 C T 5027.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.82;SOR=0.798 GT:AD:DP:GQ:PL 1/1:0,158:158:99:5056,475,0 X 149642019 rs2073043 A G 1517.77 PASS AC=2;AF=1;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.64;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1546,159,0 X 149680539 rs113311895 C T 2810.77 PASS AC=2;AF=1;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.23;SOR=0.99 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2839,270,0 X 149680554 rs2070779 C T 2778.77 PASS AC=2;AF=1;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.54;SOR=1.071 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2807,273,0 X 149826503 rs222410 G A 888.77 PASS AC=2;AF=1;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=1.839 GT:AD:DP:GQ:PL 1/1:0,31:31:93:917,93,0 X 150348228 rs1202874 C T 956.77 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.14;SOR=1.418 GT:AD:DP:GQ:PL 1/1:0,34:34:99:985,102,0 X 150349871 rs13440581 A G 1630.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.62;SOR=0.859 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1659,150,0 X 150789950 rs945815 C T 1100.77 PASS AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.22;SOR=0.968 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1129,117,0 X 150840185 rs6627174 T C 3360.77 PASS AC=2;AF=1;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.12;SOR=0.808 GT:AD:DP:GQ:PL 1/1:0,108:108:99:3389,323,0 X 150884620 rs3810715 C T 1454.77 PASS AC=2;AF=1;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.98;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1483,156,0 X 150909307 rs35350051 G T 1240.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.54;SOR=1.005 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1269,126,0 X 151303393 rs210586 C T 2517.77 PASS AC=2;AF=1;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.08;SOR=0.876 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2546,243,0 X 151303596 rs210585 C T 2475.77 PASS AC=2;AF=1;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.47;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2504,251,0 X 151821277 rs3810651 T A 1848.77 PASS AC=2;AF=1;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.34;SOR=0.796 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1877,177,0 X 151899913 rs2233055 T C 5587.77 PASS AC=2;AF=1;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.39;SOR=1.244 GT:AD:DP:GQ:PL 1/1:0,178:178:99:5616,534,0 X 151904488 rs2515838 C A 2870.77 PASS AC=2;AF=1;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=58.33;QD=27.6;SOR=0.693 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2899,311,0 X 152083059 rs6526142 G A 1591.77 PASS AC=2;AF=1;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.03;SOR=1.524 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1620,159,0 X 152482064 rs2233046 T C 2888.77 PASS AC=2;AF=1;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.4;SOR=1.485 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2917,276,0 X 152482198 rs2233045 G A 4518.77 PASS AC=2;AF=1;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.6;SOR=0.718 GT:AD:DP:GQ:PL 1/1:0,158:158:99:4547,472,0 X 152482917 rs2008160 T C 2580.77 PASS AC=2;AF=1;AN=2;BaseQRankSum=1.135;ClippingRankSum=0;DB;DP=87;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;MQRankSum=0;QD=29.66;ReadPosRankSum=-0.725;SOR=0.979 GT:AD:DP:GQ:PL 1/1:2,85:87:99:2609,212,0 X 152610985 rs3213466 T C 1664.77 PASS AC=2;AF=1;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.7;SOR=0.914 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1693,174,0 X 152613112 rs7066295 C T 4895.77 PASS AC=2;AF=1;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.41;SOR=0.985 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4924,481,0 X 152727535 rs369801831 TA T 494.73 PASS AC=2;AF=1;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=24.74;SOR=0.892 GT:AD:DP:GQ:PL 1/1:0,20:20:60:532,60,0 X 152770230 rs4833 G A 4128.77 PASS AC=2;AF=1;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.14;SOR=0.737 GT:AD:DP:GQ:PL 1/1:0,137:137:99:4157,411,0 X 152807923 rs2980013 G C 3844.77 PASS AC=2;AF=1;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.13;SOR=0.82 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3873,396,0 X 152815089 rs3020949 A G 5475.77 PASS AC=2;AF=1;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.23;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,194:194:99:5504,581,0 X 152821887 rs3020957 C T 4767.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.98;SOR=1.136 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,106:106:99:1|1:152821887_C_T:4796,325,0 X 152821896 rs2269414 C T 4703.77 PASS AC=2;AF=1;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=44.8;SOR=1.168 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,105:105:99:1|1:152821887_C_T:4732,319,0 X 152825414 rs3020959 G T 1882.77 PASS AC=2;AF=1;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.53;SOR=1.284 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1911,195,0 X 152864477 rs199537978 G GC 3682.73 PASS AC=2;AF=1;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.89;QD=33.18;SOR=0.907 GT:AD:DP:GQ:PL 1/1:0,111:111:99:3720,335,0 X 152864513 rs200645137 G GC 3094.73 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.73;QD=35.17;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3132,265,0 X 152954025 rs384573 A G 1162.77 PASS AC=2;AF=1;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=27.04;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1191,129,0 X 153009197 rs2229539 G C 2789.77 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=59.46;QD=31.7;SOR=1.312 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2818,264,0 X 153039502 rs6643791 G C 3784.77 PASS AC=2;AF=1;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.28;SOR=0.709 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3813,375,0 X 153041544 rs5987155 T C 3703.77 PASS AC=2;AF=1;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.86;SOR=0.95 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3732,360,0 X 153048403 rs916001 T C 4013.77 PASS AC=2;AF=1;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.95;SOR=0.723 GT:AD:DP:GQ:PL 1/1:0,134:134:99:4042,401,0 X 153049535 rs4898444 A G 5413.77 PASS AC=2;AF=1;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.24;SOR=0.822 GT:AD:DP:GQ:PL 1/1:0,179:179:99:5442,536,0 X 153050984 rs1802092 G A 3544.77 PASS AC=2;AF=1;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.3;SOR=1.258 GT:AD:DP:GQ:PL 1/1:0,117:117:99:3573,351,0 X 153051907 rs2071122 G A 1271.77 PASS AC=2;AF=1;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.79;SOR=1.788 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1300,120,0 X 153170980 rs56689668 T G 2676.77 PASS AC=2;AF=1;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.32;SOR=1.179 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2705,234,0 X 153171993 rs5201 A G 4274.77 PASS AC=2;AF=1;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.88;SOR=0.724 GT:AD:DP:GQ:PL 1/1:0,130:130:99:4303,390,0 X 153176254 rs2070097 A G 5191.77 PASS AC=2;AF=1;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.28;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,166:166:99:5220,497,0 X 153176359 . G C 381.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0;DP=122;ExcessHet=3.0103;FS=209.655;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.21;ReadPosRankSum=-6.031;SOR=5.889 GT:AD:DP:GQ:PGT:PID:PL 0/1:101,18:119:99:0|1:153176349_A_C:410,0,19466 X 153176363 . T C 367.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0;DP=117;ExcessHet=3.0103;FS=174.95;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.23;ReadPosRankSum=-5.375;SOR=5.416 GT:AD:DP:GQ:PGT:PID:PL 0/1:100,14:114:99:0|1:153176349_A_C:396,0,19238 X 153176364 . G C 367.77 SNP_FS_filter;SNP_SOR_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.21;ClippingRankSum=0;DP=116;ExcessHet=3.0103;FS=174.381;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=3.25;ReadPosRankSum=-5.565;SOR=5.416 GT:AD:DP:GQ:PGT:PID:PL 0/1:99,14:113:99:0|1:153176349_A_C:396,0,19238 X 153176368 . G C 132.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=135.458;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.24;ReadPosRankSum=-4.856;SOR=4.796 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,10:107:99:0|1:153176349_A_C:161,0,19225 X 153176369 . T C 132.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0;DP=110;ExcessHet=3.0103;FS=125.044;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.24;ReadPosRankSum=-4.93;SOR=4.796 GT:AD:DP:GQ:PGT:PID:PL 0/1:97,10:107:99:0|1:153176349_A_C:161,0,19225 X 153176374 . A C 102.77 SNP_QD_filter;SNP_FS_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0;DP=104;ExcessHet=3.0103;FS=113.198;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=1.02;ReadPosRankSum=-5.599;SOR=4.605 GT:AD:DP:GQ:PGT:PID:PL 0/1:92,9:101:99:0|1:153176349_A_C:131,0,18468 X 153178459 rs5904376 G GC 2982.73 PASS AC=2;AF=1;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=33.89;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3020,271,0 X 153278829 rs1059703 G A 2863.77 PASS AC=2;AF=1;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.83;SOR=0.735 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2892,287,0 X 153283762 rs375667983 G A 1016.77 PASS AC=2;AF=1;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.9;SOR=0.811 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1045,102,0 X 153284192 rs1059702 A G 536.77 PASS AC=2;AF=1;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.82;SOR=1.493 GT:AD:DP:GQ:PL 1/1:0,18:18:54:565,54,0 X 153284483 rs1059701 G A 2287.77 PASS AC=2;AF=1;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.22;SOR=1.042 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2316,213,0 X 153418541 rs949431 T G 2406.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=1.471;ClippingRankSum=0;DB;DP=353;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.5;MQ=51.1;MQRankSum=-3.568;QD=6.84;ReadPosRankSum=0.117;SOR=0.803 GT:AD:DP:GQ:PL 0/1:233,119:352:99:2435,0,5420 X 153629155 rs12012747 A G 2333.77 PASS AC=2;AF=1;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=53.34;QD=33.34;SOR=0.874 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2362,210,0 X 153633359 rs1130929 G C 3066.77 PASS AC=2;AF=1;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.49;SOR=0.994 GT:AD:DP:GQ:PL 1/1:0,104:104:99:3095,312,0 X 153657083 rs28497482 A G 5383.77 PASS AC=2;AF=1;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.48;SOR=1.289 GT:AD:DP:GQ:PL 1/1:0,171:171:99:5412,513,0 X 153693126 rs139336954 C T 2101.77 PASS AC=2;AF=1;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60.14;QD=28.4;SOR=1.121 GT:AD:DP:GQ:PL 1/1:0,74:76:99:2130,222,0 X 153880830 rs4326559 A C 4679.77 PASS AC=2;AF=1;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=31.41;SOR=1.156 GT:AD:DP:GQ:PL 1/1:0,149:149:99:4708,447,0 X 153881525 rs17328091 G C 5008.77 PASS AC=2;AF=1;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=32.95;SOR=1.625 GT:AD:DP:GQ:PL 1/1:0,152:152:99:5037,456,0 X 153881773 rs34402964 T C 1482.77 SNP_MQ_filter;SNP_SOR_filter AC=2;AF=1;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=39.59;QD=38.02;SOR=7.378 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1511,117,0 X 153940861 rs17281349 G A 2199.77 PASS AC=2;AF=1;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.33;SOR=0.955 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2228,225,0 X 153994596 rs2728532 G T 2149.77 PASS AC=2;AF=1;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=29.05;SOR=0.747 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2178,222,0 X 154158285 rs1800291 G C 2065.77 PASS AC=2;AF=1;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.38;SOR=0.814 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2094,204,0 X 154456747 rs572013 A G 2092.77 PASS AC=2;AF=1;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.67;SOR=0.836 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2121,218,0 X 154507173 rs559165 T G 778.77 PASS AC=2;AF=1;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=28.84;SOR=1.302 GT:AD:DP:GQ:PL 1/1:0,27:27:81:807,81,0 X 154721340 . C CA 1248.74 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0;DP=140;ExcessHet=3.0103;FS=2.907;MLEAC=1;MLEAF=0.5;MQ=46.25;MQRankSum=-5.127;QD=14.19;ReadPosRankSum=1.477;SOR=0.421 GT:AD:DP:GQ:PL 0/1:26,62:132:99:1286,0,333 X 155233098 . T C 1142.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.154;ClippingRankSum=0;DP=81;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=60;MQRankSum=0;QD=14.28;ReadPosRankSum=-0.246;SOR=0.783 GT:AD:DP:GQ:PL 0/1:34,46:80:99:1171,0,810 X 155237292 . A C 79.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=2.771;ClippingRankSum=0;DP=21;ExcessHet=3.0103;FS=2.74;MLEAC=1;MLEAF=0.5;MQ=43.62;MQRankSum=-1.954;QD=3.8;ReadPosRankSum=-0.672;SOR=1.845 GT:AD:DP:GQ:PL 0/1:17,4:21:99:108,0,429 X 155239499 . G A 64.77 SNP_QD_filter AC=1;AF=0.5;AN=2;BaseQRankSum=2.863;ClippingRankSum=0;DP=73;ExcessHet=3.0103;FS=10.681;MLEAC=1;MLEAF=0.5;MQ=55.68;MQRankSum=-6.543;QD=0.89;ReadPosRankSum=-2.953;SOR=2.494 GT:AD:DP:GQ:PL 0/1:63,10:73:93:93,0,1578 Y 4968368 rs199979134 G T 2668.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=36.94;QD=32.15;SOR=0.717 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2697,249,0 Y 4968655 rs75134848 T G 2605.77 SNP_MQ_filter AC=2;AF=1;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=34.02;QD=32.98;SOR=1.136 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2634,237,0 Y 9197998 rs368632690 C T 61.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-3.038;ClippingRankSum=0;DB;DP=30;ExcessHet=3.0103;FS=0;MLEAC=1;MLEAF=0.5;MQ=29.84;MQRankSum=2.25;QD=2.06;ReadPosRankSum=-0.608;SOR=0.052 GT:AD:DP:GQ:PL 0/1:25,5:30:90:90,0,696 Y 9304636 . C T 2495.77 SNP_MQ_filter AC=1;AF=0.5;AN=2;BaseQRankSum=-2.456;ClippingRankSum=0;DP=1247;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.5;MQ=28.72;MQRankSum=-1.629;QD=2;ReadPosRankSum=0.071;SOR=0.549 GT:AD:DP:GQ:PL 0/1:999,246:1245:99:2524,0,22811 Y 14898435 . CT C 226.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0;DP=48;ExcessHet=3.0103;FS=2.55;MLEAC=1;MLEAF=0.5;MQ=60.9;MQRankSum=2.141;QD=5.53;ReadPosRankSum=0.364;SOR=0.7 GT:AD:DP:GQ:PL 0/1:23,18:45:99:264,0,497 Y 14954404 rs151160568 C CT 393.73 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.442;ClippingRankSum=0;DB;DP=40;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.5;MQ=60.54;MQRankSum=1.088;QD=12.3;ReadPosRankSum=-0.715;SOR=0.275 GT:AD:DP:GQ:PL 0/1:11,21:32:99:431,0,121 Y 15027529 rs2032636 T G 1744.77 PASS AC=2;AF=1;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=34.9;SOR=1.958 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1773,150,0 Y 15581983 rs2032658 G A 1281.77 PASS AC=2;AF=1;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0;MLEAC=2;MLEAF=1;MQ=60;QD=30.52;SOR=1.556 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1310,126,0