News

API: JSON methods
The promised support for the Distributed Annotation System will take some time. But in the meantime you can access openSNP using some simple JSON-methods. Examples can be found for SNPs, users and phenotypes. To learn more about how to use those methods you may want to read the FAQ or this blogpost we've written about this.
SSL-Support
Hello everyone! We've bought a SSL-certificate so that you can safely browse this site (especially relevant if you log in to this site over an open WLAN). You can access the SSL-version of openSNP over this link. It's still experimental, so if you find anything please message Philipp or Bastian.
Winning the Binary Battle and Data-Dumps
What a shame: We totally forgot to announce it here. But we are the winner of the Mendeley/PLoS Binary Battle. Since this we got many new users and it's great to see how many of you are willing to share their data. If you are interested in downloading the information that is uploaded to our website you are lucky.

We just implemented three new features: The genotype-overview, the data-dump and several uploads for each user. The first one gives you a table of all the genotyping files we have in our database. The second can be found on the genotype-overview and it produces a zipped file that includes all genotyping-information, as well as a tabular file that includes all phenotypic information of those users. You can now also upload several genotypings, have a look at the Settings-page.

Enjoy playing around with it. And as usual: If you find any bugs please contact Philipp or Bastian.
SNP-ids/names
Hello everyone! We've implemented a minor change, you can now access SNPs over their name directly, together with the ID (like we had it before) - e.g. http://opensnp.org/snps/rs7566605 now leads to the SNP named rs7566605. If you encounter any problems please contact Philipp or Basti.

Users

ID Name Joined on Link
440 Standard_head Amir 17.05.2012 16:30 Profile
439 Standard_head Robert Horley 16.05.2012 13:10 Profile
438 Standard_head mindbound 16.05.2012 09:21 Profile
437 Standard_head Justin Loe 15.05.2012 23:07 Profile
436 Standard_head Paige Steele-Rollins 15.05.2012 01:15 Profile
434 Standard_head Boris Scheiman 14.05.2012 04:50 Profile
433 Standard_head Arthur J. McDaniel 14.05.2012 04:37 Profile
432 Standard_head Jon Mager 14.05.2012 02:40 Profile
431 Standard_head sami 14.05.2012 01:28 Profile
430 Standard_head Benjamin 12.05.2012 23:59 Profile
429 Mikes%20eye Aussie 12.05.2012 23:17 Profile
428 Standard_head sgasparoto 11.05.2012 14:37 Profile
427 Dock Andrea Badger 11.05.2012 09:10 Profile
425 Standard_head Jo Ann Sitton 10.05.2012 20:34 Profile
424 Standard_head Lars Johnsen 10.05.2012 11:22 Profile
423 Standard_head Mike 10.05.2012 10:07 Profile
422 Standard_head Donna L. Acone 09.05.2012 01:56 Profile
421 Standard_head Juan Pablo Braña 08.05.2012 21:33 Profile
420 Standard_head Rolando 08.05.2012 20:32 Profile
419 Standard_head calvin 08.05.2012 17:00 Profile

Phenotypes

Name Variations # of Users
Cystic Fibrosis Like Disease
    		0
    Insect bites and stings
    • I'm not allergic
    		3
    Allergic/bad reaction to fish oil supplements
    • unknown
    • No
    		 6
    Phobia
    • yes
    		 3
    Acrophobia
    • yes
    • Counterphobic (Skydiver)
    		 2
    Dyslexia
    • No
    		 7
    Ancestry
    • South European
    • Irish, Where Men aren't British
    • Northern european
    • European Mediterranean - Maltese
    • northern and southern european
    		 9
    Tea consumption
    • 8
    • 2 cups per month
    • Rarely
    • 3 - 4 daily
    • 1-2 cups/day
    • 14
    • 1
    • 2-3 cups/day
    		 12
    Autoimmune disorder
    • Yes
    • No
    • Eczema
    • undiagnosed
    • Hashimoto's thyroiditis
    		 7
    ethnicity
    • caucasion
    • Mediterranean - Maltese
    • adopted
    		 8
    head form
    • hyperbrachycephal
    • Forehead rather large
    • squarish face, medium headed
    		 4
    Major Depressive Disorder
    • Has Major Depressive Disorder
    • None
    		 7
    Enjoy riding a motorbike
    • Yes
    • No
    • Do not know
    • no
    		 10
    Fish Preference
    • Dislike
    • Neutral
    • like
    		 16
    (Male) Nipple's size
    • small
    • N/A
    		 8
    Interested in news from real newspaper / news from the Internet
    • Often
    • yes
    • Somewhat
    • No, boring
    • daily internet, little or no newspaper
    • somewhat
    		 12
    Enjoy using the Internet
    • yes
    • Not really, it is boring
    		 19
    Enjoy watching TV
    • no
    • yes
    		 15
    Smell of coffee in urine
    • yes
    • strongly
    • No
    		 10
    Photic Sneeze Reflex (Photoptarmis)
    • photic sneezer
    • no sneezing
    • I have the SNP but no sneezing
    		 13

    Phenotype Comments

    Phenotype Comment By Subject Date
    Good / poor eater as child Rhonda Lea Kirk Fries The body knows 13.05.2012 02:30
    Insect bites and stings Altorfer I'm not allergic 11.05.2012 16:43
    Insect bites and stings Altorfer I'm not allergic 11.05.2012 16:43
    Insect bites and stings Altorfer I'm not allergic 11.05.2012 16:43
    ENTP Bastian Greshake duplicate 05.05.2012 10:32
    ENTP S. Grose Feedback from researchers 18.04.2012 14:15
    ENTP S. Grose risk taker, rule breaker... 18.04.2012 14:06
    ENTP S. Grose - 18.04.2012 13:36
    ENTP S. Grose already myers-briggs 18.04.2012 13:32
    Political Ideology soler would like to change to communist 15.04.2012 15:04
    Sports interest Altorfer choose 24.03.2012 17:10
    ring finger longer than index finger Altorfer - 24.03.2012 16:39
    Index Toe Longer than Big Toe Little bit - 20.03.2012 17:55
    Index Toe Longer than Big Toe Samantha - 13.03.2012 00:57
    Brown hair, brown eyes, pale skin. B+ blood type. Central Asian Samantha - 10.02.2012 19:39
    ENTP Samantha - 10.02.2012 19:37
    Sex Samantha - 10.02.2012 19:22
    ENTP John Lloyd Scharf Pseudo Science. 03.01.2012 02:47
    Sex John Lloyd Scharf Gender Assignment 03.01.2012 02:45
    Number of great-great grandparents born in Sweden Bastian Greshake Not a classical phenotype 10.12.2011 11:23

    SNP Comments

    SNP Comment By Subject Date
    rs2300753 Little bit A carriers - wheat problems 12.05.2012 21:36
    rs13078881 Little bit C carriers! 12.05.2012 19:02
    rs174575 Little bit GG's - your reaction to fish oil supplements? 25.04.2012 17:04
    rs4994 Little bit - 20.03.2012 18:13
    rs4994 Bastian Greshake Interesting! 21.02.2012 22:03
    rs4994 Little bit GG's - wow are we rare! 16.02.2012 12:56
    rs1205 Bastian Greshake Thanks 10.12.2011 12:16
    rs1205 John Lloyd Scharf http://www.snpedia.com/index.php/Rs1205 08.12.2011 21:13
    rs10811661 John Lloyd Scharf TT is risk allele 03.12.2011 16:56
    rs9939609 Philipp Bayer Interesting paper 03.11.2011 06:46
    rs7566605 Bastian Greshake - 02.10.2011 17:18
    rs7566605 Nash Parovoz correct frequencies 01.10.2011 11:02
    Rss_small

    Latest publications

    SNP Author Title Found at
    rs505922 C Tanikawa A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population 18.05.2012 05:42
    rs1558902 Caroline S. Fox Genome-Wide Association for Abdominal Subcutaneous and Visceral Adipose Reveals a Novel Locus for Visceral Fat in Women 17.05.2012 21:59
    rs34489327 Jian-Yuan Zhao Genetic Polymorphisms of the TYMS Gene Are Not Associated with Congenital Cardiac Septal Defects in a Han Chinese Population 17.05.2012 20:01
    rs2201841 Ming-Hsi Wang Contribution of higher risk genes and European admixture to Crohn's disease in African Americans. 17.05.2012 17:00
    rs930557 Patrick C. M. Wong The Derived Allele of ASPM Is Associated with Lexical Tone Perception 17.05.2012 15:12
    rs2373115 Eric M Reiman Report GAB2 Alleles Modify Alzheimer ’ s Risk in APOE 34 Carriers 17.05.2012 00:49
    rs7975232 Roberts C Vitamin D related genes and maternal circulating 250H vitamin D3 associate with pregnancy complications in an Australian population 16.05.2012 14:45
    rs7975232 Rolf Jorde Associations between Polymorphisms Related to Calcium Metabolism and Human Height: The Tromsø Study. 16.05.2012 14:45
    rs11178997 Armen K Goenjian Association of TPH1, TPH2, and 5HTTLPR with PTSD and depressive symptoms. 16.05.2012 12:23
    rs290487 Hong Qiao Genetic variants of TCF7L2 are associated with type 2 diabetes in a northeastern Chinese population. 16.05.2012 08:01
    rs9897526 Maria Anfossi MAPT V363I variation in a sporadic case of frontotemporal dementia: variable penetrant mutation or rare polymorphism? 16.05.2012 04:13
    rs2014486 Bernd Frank Polymorphisms in MUC1, MUC2, MUC5B and MUC6 genes are not associated with the risk of chronic atrophic gastritis. 16.05.2012 03:39
    rs50871 Lori C Sakoda Germ line variation in nucleotide excision repair genes and lung cancer risk in smokers. 16.05.2012 02:40
    rs2023239 G Nicoll Alelle specific differences in the activity of a novel cannabinoid receptor 1(CNR1) gene intronic enhancer in hypothalamus, dorsal root ganglia and hippocampus 16.05.2012 02:08
    rs2542151 Wei Yu PTPN2 is associated with Crohn's disease and its expression is regulated by NKX2-3. 16.05.2012 00:55
    rs2542151 Wei Yu PTPN2 is associated with Crohn's disease and its expression is regulated by NKX2-3. 16.05.2012 00:55
    rs617698 Mao Fu Chromosome 1q21 Is Associated With Type 2 Diabetes in the Old Order Amish 16.05.2012 00:42
    rs16917302 FJ Couch Common Variants at the 19p13.1 and ZNF365 Loci Are Associated with ER Subtypes of Breast Cancer and Ovarian Cancer Risk in BRCA1 and BRCA2 Mutation Carriers. 15.05.2012 22:21
    rs12497191 Dragojevi J Promoter PPARG polymorphism is associated with sRANKL in slovenian postmenopausal women 15.05.2012 18:02
    rs1042714 Y D Apalasamy Gender-Dependent Association of a β2-Adrenergic Gene Variant With Obesity Parameters in Malaysian Malays 15.05.2012 16:29
    rs279836 Magdalena Uhart GABRA2 markers moderate the subjective effects of alcohol. 15.05.2012 13:34
    rs143383 Min-Ho Shin Genetic association analysis of GDF5 and ADAM12 for knee osteoarthritis. 15.05.2012 04:04
    rs4704397 Anna Grandone Impact of phosphodiesterase 8B gene rs4704397 variation on thyroid homeostasis in childhood obesity. 15.05.2012 03:00
    rs334 Marly A. Cardoso Underlying Factors Associated with Anemia in Amazonian Children: A Population-Based, Cross-Sectional Study 10.05.2012 12:08
    rs334 Sarah H Atkinson Seasonal Childhood Anaemia in West Africa Is Associated with the Haptoglobin 2-2 Genotype 10.05.2012 12:08
    rs334 Anita Ghansah Haplotype Analyses of Haemoglobin C and Haemoglobin S and the Dynamics of the Evolutionary Response to Malaria in Kassena-Nankana District of Ghana 10.05.2012 12:08
    rs7626978 Joseph P. Jarvis Patterns of Ancestry, Signatures of Natural Selection, and Genetic Association with Stature in Western African Pygmies 10.05.2012 00:07
    rs5068 Rory Johnson A Genome-Wide Screen for Genetic Variants That Modify the Recruitment of REST to Its Target Genes 09.05.2012 09:04
    rs9273349 Joseph E. Powell The Brisbane Systems Genetics Study: Genetical Genomics Meets Complex Trait Genetics 09.05.2012 07:40
    rs11246226 Andrea Burri A Genome-Wide Association Study of Female Sexual Dysfunction 09.05.2012 04:06
    rs2390669 Christina M. Lill Comprehensive Research Synopsis and Systematic Meta-Analyses in Parkinson's Disease Genetics: The PDGene Database 09.05.2012 03:20
    rs12740374 Steven Buyske Evaluation of the Metabochip Genotyping Array in African Americans and Implications for Fine Mapping of GWAS-Identified Loci: The PAGE Study 08.05.2012 16:21
    rs5743592 Elizabeth A. Misch Human TLR1 Deficiency Is Associated with Impaired Mycobacterial Signaling and Protection from Leprosy Reversal Reaction 08.05.2012 14:12
    rs1539549 Bjarte Håvik DCLK1 Variants Are Associated across Schizophrenia and Attention Deficit/Hyperactivity Disorder 07.05.2012 20:55
    rs2279744 Stian Knappskog MDM2 Promoter SNP344T>A (rs1196333) Status Does Not Affect Cancer Risk 07.05.2012 18:05
    rs284495 Janey L. Wiggs Common Variants at 9p21 and 8q22 Are Associated with Increased Susceptibility to Optic Nerve Degeneration in Glaucoma 07.05.2012 09:03
    rs10503929 Berta Luzón-Toro Comprehensive Analysis of NRG1 Common and Rare Variants in Hirschsprung Patients 07.05.2012 01:50
    rs12608932 Frank P. Diekstra Mapping of Gene Expression Reveals CYP27A1 as a Susceptibility Gene for Sporadic ALS 07.05.2012 01:01
    rs7837164 Vesna Boraska Genome-Wide Association Study to Identify Common Variants Associated with Brachial Circumference: A Meta-Analysis of 14 Cohorts 06.05.2012 22:44
    rs41741 Ming-Teng Lin MET and AKT Genetic Influence on Facial Emotion Perception 06.05.2012 18:55